Citrus Sinensis ID: 009373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
Protein Sequence
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Secondary Structure (PSIPRED)
ccccccEEccccccccccccccHHHHHHHHHcccccEEEEEccEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEEccHHHHcccccccccccEEEEEEEEEEccccccccccccEEEEEcccEEEEEEccccEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccccccccEEEEccccccEEEEEEcccEEEEEEccccEEEEEcccccEEEEEccccEEEEEEccccEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccccccccccEEEcccccccEEEEEEcccEEEEEcccccEEEEEccccccccccccccEEEEEEEcccccEEEccccccEEEEEEcccEEEEEcccccEEEEEcccccccccccccEEEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccccccccccccccEEEEEcccccEEEEEccccccEEEEEcccccccccccccHHccccHHHHHHHHHHccccccEEEEcccHHHHHHcccccccHEEEEEEEcccccccEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEccccccEEEEEccccEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccccccccEEEEEccccccEEEEEEccccEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccEEEEcccccEEEEEEccccHHHHHHHHHcccccccEEEEEEcccccEEEEccccccEEEEEcccccccccccEEEcEEcccccEcc
Coil and Loop (DISEMBL)
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKStleskqlpcndvlsnlhrstitdlppaLISEILncldpkelgivscvspilhrlasdhHAWKEFycerwglpiasaplgagfsddksWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLedgfsiasskplgcTIRAVAADKKLLvaggtdgfiHCWRAVEVlphlfdisgsekqNTQFRLwehegpitslaldltriysgswdmTVRVWDRALLKCLKVLrhsdwvyglaphdttvastsgsdvyiwdtnsgclltvvngahvgntkslarshtgdflftggedgaIHMYEIINDCTEANVLLVATWiphtgpvnslafefpwlvsaagdgklSLIDVRKLLrsgrptsgkrvsrvieveppqrmlhgfecnllsvdigadrivcggEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTemsskggrtdqcsvaakknpmngnrrsvwhnkrgmsgklka
Flexible Loop (DISEMBL)
mafecqrvtrvskdlansvEDSLQSQIESELNNLNFEIEATKStleskqlpcNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKllrsgrptsgkrvsrvieveppqrmlhgfECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARalrgirlenrmrrrklqtemsskggrtdqcsvaakknpmngnrrsvwhnkrgmsgklka
Low Complexity Region (SEG)
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Disordered region (IsUnstruct)
*************************************************LPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR***********RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIR*****************************************************
Disordered Region (DISOPRED)
*********************SLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Disordered Region (DISEMBL)
*********RVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS*********SRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR**************QCSVAAKKNPMNGNRRSVWHNKR********
Disordered Region (DISPRO)
*AFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	536	2.2.26 [Sep-21-2011]
Q94AD8	539	F-box/WD-40 repeat-contai	yes	no	0.990	0.985	0.656	0.0
C5FP68	674	Probable E3 ubiquitin lig	N/A	no	0.475	0.378	0.270	1e-15
D4D8P3	663	Probable E3 ubiquitin lig	N/A	no	0.475	0.384	0.269	2e-15
D4AM37	663	Probable E3 ubiquitin lig	N/A	no	0.475	0.384	0.269	2e-15
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.511	0.179	0.269	4e-14
P39014	640	F-box protein MET30 OS=Sa	yes	no	0.481	0.403	0.264	1e-12
Q969H0	707	F-box/WD repeat-containin	yes	no	0.365	0.277	0.244	6e-12
Q00808	1356	Vegetative incompatibilit	no	no	0.509	0.201	0.269	1e-11
Q8VBV4	629	F-box/WD repeat-containin	no	no	0.365	0.311	0.244	2e-11
A1DHW6	689	Probable E3 ubiquitin lig	N/A	no	0.557	0.433	0.261	3e-11

>sp|Q94AD8|FBW3_ARATH F-box/WD-40 repeat-containing protein At5g21040 OS=Arabidopsis thaliana GN=At5g21040 PE=2 SV=1

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/544 (65%), Positives = 429/544 (78%), Gaps = 13/544 (2%)

Query: 1   MAFECQRVTRVSKDLAN-----SVEDSLQSQIESELNNLNFEIEATKSTL---ESKQLPC 52
           M FECQ     + D  +     + +  + +    E+ N+    +  K TL    SKQL  
Sbjct: 1   MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLS 60

Query: 53  NDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112
           +  LS    +TI DLP ALISEILNCLDPKELG+VSCVS  LHRLAS+HHAWKEFY ERW
Sbjct: 61  DKDLS----TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERW 116

Query: 113 GLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKL 172
           GLP+      +G SD++SWK+LFVEREFRS+TFLGRYSID LYGHTEAV TVF+LASAKL
Sbjct: 117 GLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVFLLASAKL 176

Query: 173 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP 232
           +FTSGYDSIVRMW +E+G SIA+SKPLGCTIRA+AAD KLLVAGGTDGFIHCW++++ L 
Sbjct: 177 VFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLR 236

Query: 233 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS 292
           +LFD++G +K+ T+FRLW HEGPITSLALD+T I+SGSWDM+VR+WDR+ +KC+K LRHS
Sbjct: 237 NLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHS 296

Query: 293 DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 352
           DWV+GLAPH+TT+ASTSGSDVYIWD +S   L ++  AH G T SLARSHTGDFLFTGGE
Sbjct: 297 DWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGE 356

Query: 353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR 412
           DG I M+EI    +E +V+L++ W+PHT PV SL+FEFPWLVSA+GDGKL+LIDVRKLL+
Sbjct: 357 DGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLK 416

Query: 413 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472
           + R    KR+S    VEPPQRMLHGF  NL SVD+G DRIVCGGEEG VRIWNF+QA EI
Sbjct: 417 TNRCAYSKRISSST-VEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEI 475

Query: 473 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSG 532
           ERR RAL+G+R ENRMRRR++Q EM++K GR DQCS+AA KNP+NG R   WH+KR  SG
Sbjct: 476 ERRTRALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASG 535

Query: 533 KLKA 536
           K KA
Sbjct: 536 KAKA 539

Arabidopsis thaliana (taxid: 3702)

>sp|C5FP68|SCONB_ARTOC Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=sconB PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 132/311 (42%), Gaps = 56/311 (18%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF-------YCER--WGL 114
           +T LPP +  +IL+ LD   L   + VS     LA D   W           CE+  WGL
Sbjct: 215 VTALPPEISFKILSYLDTASLCNAAQVSRNWRHLADDDVVWHRMCEQHIDRKCEKCGWGL 274

Query: 115 PI-------------------ASAPLGAGFSDDKSWKELFVEREFRSKTF--LGRYSIDV 153
           P+                     A  G      + WK ++++R F+  T    GR +  +
Sbjct: 275 PMLDRKRLKDTKRQVQLRAAGKEAVTGRQQQQHRPWKAVYMDR-FKVGTNWKYGRCTTTI 333

Query: 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLL 213
             GHT  V+ +       +L T  YD+ +++W +E G  I + +    TIR +  D   L
Sbjct: 334 FRGHTNGVMCLQF--DDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTKL 391

Query: 214 VAGGTDGFIHC--WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 271
           ++G  D  I    WR+ E +      +G            H+G +  L  D T + SGS 
Sbjct: 392 ISGSLDRTIKVWSWRSGECIS---TYTG------------HQGGVLCLHFDSTTLASGSK 436

Query: 272 DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVV 327
           D T+++W+    K  ++LR H+DWV  +     +    S SD   V IWD ++G  +   
Sbjct: 437 DNTIKIWN-FQDKSTQILRGHTDWVNAVKLDTASRTVFSASDDLTVRIWDLDTGKCIHTY 495

Query: 328 NGAHVGNTKSL 338
            G HVG  + +
Sbjct: 496 AG-HVGQVQQV 505

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

>sp|D4D8P3|SCONB_TRIVH Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Trichophyton verrucosum (strain HKI 0517) GN=sconB PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 132/312 (42%), Gaps = 57/312 (18%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF-------YCER--WGL 114
           +T LPP +  +IL+ LD   L   + VS     LA D   W           CE+  WGL
Sbjct: 198 VTALPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRMCEQHIDRKCEKCGWGL 257

Query: 115 PIAS--------------------APLGAGFSDDKSWKELFVEREFRSKTF--LGRYSID 152
           P+                      AP        + WK ++++R F+  T    GR +  
Sbjct: 258 PMLDRKRLKDTKRQVQLRAAGKEIAPNQRPQQQHRPWKAVYMDR-FKVGTNWKYGRCTTT 316

Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
           +  GHT  V+ +       +L T  YD+ +++W +E G  I + +    TIR +  D   
Sbjct: 317 IFRGHTNGVMCLQF--DDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTK 374

Query: 213 LVAGGTDGFIHC--WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
           L++G  D  I    WR+ E +      +G            H+G +  L  D T + SGS
Sbjct: 375 LISGSLDRTIKVWNWRSGECIS---TYTG------------HQGGVLCLHFDSTTLASGS 419

Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTV 326
            D T+++W+    K  ++LR H+DWV  +     +    S SD   V IWD ++G  +  
Sbjct: 420 KDNTIKIWN-FHDKSTRILRGHADWVNSVKLDTASRTVFSASDDLTVRIWDLDTGKCIHS 478

Query: 327 VNGAHVGNTKSL 338
             G HVG  + +
Sbjct: 479 YAG-HVGQVQQV 489

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Trichophyton verrucosum (strain HKI 0517) (taxid: 663202)

>sp|D4AM37|SCONB_ARTBC Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=sconB PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 132/312 (42%), Gaps = 57/312 (18%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF-------YCER--WGL 114
           +T LPP +  +IL+ LD   L   + VS     LA D   W           CE+  WGL
Sbjct: 198 VTALPPEISFKILSYLDTASLCSAAQVSHSWRALADDDVVWHRMCEQHIDRKCEKCGWGL 257

Query: 115 PIAS--------------------APLGAGFSDDKSWKELFVEREFRSKTF--LGRYSID 152
           P+                      AP        + WK ++++R F+  T    GR +  
Sbjct: 258 PMLDRKRLKDTKRQVQLRAAGKEIAPNQRPQQQHRPWKAVYMDR-FKVGTNWKYGRCTTT 316

Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
           +  GHT  V+ +       +L T  YD+ +++W +E G  I + +    TIR +  D   
Sbjct: 317 IFRGHTNGVMCLQF--DDNILATGSYDATIKIWDIETGKEIRTLRGHESTIRCLQFDDTK 374

Query: 213 LVAGGTDGFIHC--WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
           L++G  D  I    WR+ E +      +G            H+G +  L  D T + SGS
Sbjct: 375 LISGSLDRTIKVWNWRSGECIS---TYTG------------HQGGVLCLHFDSTTLASGS 419

Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTV 326
            D T+++W+    K  ++LR H+DWV  +     +    S SD   V IWD ++G  +  
Sbjct: 420 KDNTIKIWN-FHDKSTRILRGHADWVNSVKLDTASRTVFSASDDLTVRIWDLDTGKCIHS 478

Query: 327 VNGAHVGNTKSL 338
             G HVG  + +
Sbjct: 479 YAG-HVGQVQQV 489

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (taxid: 663331)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 143/327 (43%), Gaps = 53/327 (16%)

Query: 154  LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKK 211
            L GHT  V +V       +L + G D IVR+W +  G  + + +     +R    + +  
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGV 1129

Query: 212  LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG 269
             L  G +D  +  W          DIS    +   + L  H   + ++A   D   + SG
Sbjct: 1130 TLANGSSDQIVRLW----------DIS---SKKCLYTLQGHTNWVNAVAFSPDGATLASG 1176

Query: 270  SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAS-TSGSDVYIWDTNSGCLLT 325
            S D TVR+WD +  KCL +L+ H+ WV  +   P  +T+AS +S   V +W+ NS   L 
Sbjct: 1177 SGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLC 1236

Query: 326  VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 385
               G H     S+  +  G  L +G  D  + +++I      ++   + T+  HT  VNS
Sbjct: 1237 TFQG-HTSWVNSVVFNPDGSMLASGSSDKTVRLWDI------SSSKCLHTFQGHTNWVNS 1289

Query: 386  LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN---L 442
            +AF          DG         +L SG   SG +  R+ E+    + LH F+ +   +
Sbjct: 1290 VAFN--------PDG--------SMLASG---SGDQTVRLWEIS-SSKCLHTFQGHTSWV 1329

Query: 443  LSVDIGAD--RIVCGGEEGIVRIWNFS 467
             SV    D   +  G ++  VR+W+ S
Sbjct: 1330 SSVTFSPDGTMLASGSDDQTVRLWSIS 1356

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P39014|MET30_YEAST F-box protein MET30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MET30 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 123/303 (40%), Gaps = 45/303 (14%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCER----------WG 113
           I+ LP  L  +IL+ LD + L   + V     +LA D   W    CE+          WG
Sbjct: 184 ISILPQELSLKILSYLDCQSLCNATRVCRKWQKLADDDRVWYHM-CEQHIDRKCPNCGWG 242

Query: 114 LP--------IASAPLGAGFSDD------KSWKELFVER-EFRSKTFLGRYSIDVLYGHT 158
           LP        I     G+  + D      + WK ++ ER +  S    G   I    GH 
Sbjct: 243 LPLLHMKRARIQQNSTGSSSNADIQTQTTRPWKVIYRERFKVESNWRKGHCRIQEFKGHM 302

Query: 159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT 218
           + VLT+    + +LLFT  YDS + +W L  G  I         ++ +  D + L+ G  
Sbjct: 303 DGVLTLQF--NYRLLFTGSYDSTIGIWDLFTGKLIRRLSGHSDGVKTLYFDDRKLITGSL 360

Query: 219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVW 278
           D  I  W  +           + +  + +R   H   + S+      I SGS D TV+VW
Sbjct: 361 DKTIRVWNYI-----------TGECISTYR--GHSDSVLSVDSYQKVIVSGSADKTVKVW 407

Query: 279 DRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD---VYIWDTNSGCLLTVVNGAHVGNT 335
                 C  +  H++WV  +  H  + +  S SD   + +WD  +   L V  G HVG  
Sbjct: 408 HVESRTCYTLRGHTEWVNCVKLHPKSFSCFSCSDDTTIRMWDIRTNSCLKVFRG-HVGQV 466

Query: 336 KSL 338
           + +
Sbjct: 467 QKI 469

Negatively regulates sulfur amino acids biosynthesis genes expression. Controls cell cycle function (being required for the G1/S transition and M-phase but not the S-phase), sulfur metabolism, and methionine biosynthesis as part of the E3 ubiquitin ligase complex SCF(Met30). Required for the efficient binding of CDC45 and MCM proteins to origins of replication. Involved in the S-adenosylmethionine (AdoMet)-mediated inhibition of the transcription function of MET4. In the context of the E3 ubiquitin ligase complex SCF(Met30), involved in the degradation of MET4 and the cellular response to cadmium. Required for efficient expression of G1 cyclins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 17/213 (7%)

Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
           I  LYGHT  V  + +    K + +   D+ +R+W +E G  +         +R V  D 
Sbjct: 454 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 511

Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
           + +V+G  D  +  W               E +     L  H   + SL  D   + SGS
Sbjct: 512 RRVVSGAYDFMVKVWDP-------------ETETCLHTLQGHTNRVYSLQFDGIHVVSGS 558

Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLLTVVN 328
            D ++RVWD     C+  L  H     G+   D   V+  + S V IWD  +G  L  + 
Sbjct: 559 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 618

Query: 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
           G +   +         +F+ T  +DG + ++++
Sbjct: 619 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 651

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Homo sapiens (taxid: 9606)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 53/326 (16%)

Query: 153  VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADK 210
             L GH  +VL+V   A  + + +   D  +++W    G    + +  G ++ +VA   D+
Sbjct: 836  TLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDR 895

Query: 211  KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS 268
            + + +G  D  I  W A          SG+  Q     L  H G + S+A   D  R+ S
Sbjct: 896  ERVASGSDDKTIKIWDAA---------SGTCTQT----LEGHGGRVQSVAFSPDGQRVAS 942

Query: 269  GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSD-VYIWDTNSGCLL 324
            GS D T+++WD A   C + L  H   V  +A  P    VAS SG   + IWDT SG   
Sbjct: 943  GSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCT 1002

Query: 325  TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPV 383
              + G H G+  S+A S  G  + +G +D  I +++  +  CT+       T   H G V
Sbjct: 1003 QTLEG-HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQ-------TLEGHGGWV 1054

Query: 384  NSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 441
             S+ F  +   + S + D  + + D      SG  T               + L G   +
Sbjct: 1055 QSVVFSPDGQRVASGSDDHTIKIWDA----VSGTCT---------------QTLEGHGDS 1095

Query: 442  LLSVDIGAD--RIVCGGEEGIVRIWN 465
            + SV    D  R+  G  +G ++IW+
Sbjct: 1096 VWSVAFSPDGQRVASGSIDGTIKIWD 1121

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8VBV4|FBXW7_MOUSE F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 86/213 (40%), Gaps = 17/213 (7%)

Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
           I  LYGHT  V  + +    K + +   D+ +R+W +E G  +         +R V  D 
Sbjct: 376 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 433

Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
           + +V+G  D  +  W               E +     L  H   + SL  D   + SGS
Sbjct: 434 RRVVSGAYDFMVKVWDP-------------ETETCLHTLQGHTNRVYSLQFDGIHVVSGS 480

Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT-VASTSGSDVYIWDTNSGCLLTVVN 328
            D ++RVWD     C+  L  H     G+   D   V+  + S V IWD  +G  L  + 
Sbjct: 481 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 540

Query: 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
           G     +         +F+ T  +DG + ++++
Sbjct: 541 GPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 573

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1.

Mus musculus (taxid: 10090)

>sp|A1DHW6|SCONB_NEOFI Probable E3 ubiquitin ligase complex SCF subunit sconB OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sconB PE=3 SV=1

 Score = 70.9 bits (172), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 144/355 (40%), Gaps = 56/355 (15%)

Query: 129 KSWKELFVEREFRSKTF--LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 186
           + WKE++ +R F+  T    GR SI V  GH+  ++ +       +L T  YD+ +++W 
Sbjct: 330 RPWKEVYKDR-FKVGTNWKYGRCSIRVFKGHSNGIMCLQF--EDNILATGSYDATIKIWD 386

Query: 187 LEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHC--WRAVEVLPHLFDISGSEKQN 244
            E G  + + K     IR +  D   L++G  D  +    WR  E +      SG     
Sbjct: 387 TETGEELRTLKGHRSGIRCLQFDDTKLISGSMDHTLKVWNWRTGECISTY---SG----- 438

Query: 245 TQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTT 304
                  H G +  L  D T + SGS D TV++W+        +  H+DWV  +     +
Sbjct: 439 -------HRGGVVGLHFDATILASGSVDKTVKIWNFEDKSTCLLRGHTDWVNAVRVDSAS 491

Query: 305 VASTSGSD---VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
               S SD   V +WD ++   +   +G HVG  + +      +F F   ED   H  E 
Sbjct: 492 RTVFSASDDCTVKLWDLDTKSCIRTFHG-HVGQVQQVV-PLPREFEF---ED---HDVEC 543

Query: 362 INDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR 421
            ND    NV + +   P   P        P   +   D   S          GRP+  + 
Sbjct: 544 END----NVSVTSGDSPAASPQ-----AIPGFDAQTSDTPSSAFG--PAFDDGRPSPPRY 592

Query: 422 VS--------RVIEVEPPQRMLHGFECNLLSV-DIGAD--RIVCGGEEGIVRIWN 465
           +         R+ E     R L  F  +L  V  + AD  RIV G E+ +V+IW+
Sbjct: 593 IVTSALDSTIRLWETS-SGRCLRTFFGHLEGVWALAADTLRIVSGAEDRMVKIWD 646

Component of the SCF(sconB) E3 ubiquitin ligase complex involved in the regulation of sulfur metabolite repression, probably by mediating the inactivation or degradation of the metR transcription factor.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
255561238	541	F-box and wd40 domain protein, putative	0.992	0.983	0.739	0.0
224102909	543	predicted protein [Populus trichocarpa]	0.998	0.985	0.726	0.0
356553682	570	PREDICTED: F-box/WD-40 repeat-containing	0.986	0.928	0.674	0.0
225435995	592	PREDICTED: F-box/WD-40 repeat-containing	0.951	0.861	0.714	0.0
356501332	570	PREDICTED: F-box/WD-40 repeat-containing	0.988	0.929	0.670	0.0
449514919	553	PREDICTED: F-box/WD-40 repeat-containing	0.994	0.963	0.679	0.0
449463887	599	PREDICTED: F-box/WD-40 repeat-containing	0.936	0.838	0.708	0.0
357493575	575	F-box/WD-40 repeat-containing protein [M	0.988	0.921	0.624	0.0
18420385	539	F-box protein 2 [Arabidopsis thaliana] g	0.990	0.985	0.656	0.0
297812291	530	predicted protein [Arabidopsis lyrata su	0.958	0.969	0.672	0.0

>gi|255561238|ref|XP_002521630.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223539142|gb|EEF40737.1| F-box and wd40 domain protein, putative [Ricinus communis]

 Score =  799 bits (2063), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/545 (73%), Positives = 449/545 (82%), Gaps = 13/545 (2%)

Query: 1   MAFECQRVTRVSKDLANSVED----SLQSQIESELNNLNFEIEATKSTLESKQLPCNDVL 56
           MAFECQ  T  SK+  NS E+    +   +I   +   +F+ +       SK    N+VL
Sbjct: 1   MAFECQGRTEESKNY-NSEENFNPKAKSLEIPKPILGCHFK-DGILIRDSSKNFHSNEVL 58

Query: 57  SNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPI 116
            N  RS ITDLPPALISEILNCLDPKELGIVSCVS I +RLAS++  W+E YCERWGLP+
Sbjct: 59  PNFRRS-ITDLPPALISEILNCLDPKELGIVSCVSTIFNRLASENQVWQEVYCERWGLPL 117

Query: 117 ASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTS 176
             AP G G SD+KSWKELFVEREFRSKTFLGRYSIDVLYGHTEAV TVF+LASAKL+FTS
Sbjct: 118 VPAPSGVGISDEKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVRTVFLLASAKLVFTS 177

Query: 177 GYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD 236
           GYDS+VRMW +EDG SIASS+PLGCTIRAVAAD KLLVAGGTDGFI  WRAVE LP LF+
Sbjct: 178 GYDSVVRMWDMEDGLSIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRAVEGLPCLFN 237

Query: 237 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY 296
           + GS++ N +FRLWEHEGPITSLALDL RIYSGSWDMTVR+WDR+LLKCLKVLRHSDWV+
Sbjct: 238 LKGSQELNVEFRLWEHEGPITSLALDLLRIYSGSWDMTVRIWDRSLLKCLKVLRHSDWVW 297

Query: 297 GLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356
           GL PHDTTVASTSGSDVY+WDT+SG LL V+N AHVGNT SLARSHTGDFLFTGGEDGAI
Sbjct: 298 GLVPHDTTVASTSGSDVYVWDTHSGTLLAVINRAHVGNTYSLARSHTGDFLFTGGEDGAI 357

Query: 357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP 416
           HM+EII      NV  +ATWIPH+GPV SLAFEFPWLVSA+ DGKLSLIDVRKLLR  R 
Sbjct: 358 HMFEIIGHSRMVNVFKIATWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVRKLLRICRR 417

Query: 417 TSGKRVSRV-----IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 471
           ++ K  SR+       VEPPQRMLHGF  NL SVDIGADRIVCGGEEG+VR+WNFSQA E
Sbjct: 418 STEKNASRINIVECKSVEPPQRMLHGFGPNLFSVDIGADRIVCGGEEGVVRMWNFSQALE 477

Query: 472 IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMS 531
           IERRARALRGIRLENRMRRRKLQTEM SKGGR DQCSVAAKKN M+G++ +VWH+KR +S
Sbjct: 478 IERRARALRGIRLENRMRRRKLQTEM-SKGGRNDQCSVAAKKNSMHGDKNTVWHSKRAVS 536

Query: 532 GKLKA 536
            KLKA
Sbjct: 537 SKLKA 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102909|ref|XP_002312850.1| predicted protein [Populus trichocarpa] gi|222849258|gb|EEE86805.1| predicted protein [Populus trichocarpa]

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/544 (72%), Positives = 447/544 (82%), Gaps = 9/544 (1%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKS---TLESKQLPCNDVLS 57
           MAFECQ+ T VSK LA  VE S  +    E++    +    K    +L SKQL CNDVL 
Sbjct: 1   MAFECQKSTEVSKSLAICVEKSNSNTEHLEISKSPLDCYPKKGILSSLSSKQLSCNDVLL 60

Query: 58  NLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIA 117
           N  RS ITDLPPALISEIL+CLDP+ELGIVSCVS +L+ LA+++  WKE Y ERWGLPI 
Sbjct: 61  NCRRS-ITDLPPALISEILSCLDPQELGIVSCVSRVLNSLATENSVWKEVYGERWGLPIV 119

Query: 118 SAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSG 177
            APLGAG S++KSWKELFVERE+RSK FL RYSID L+GHTEAV TV +LASAKL+FTSG
Sbjct: 120 PAPLGAGVSNEKSWKELFVEREYRSKIFLSRYSIDTLHGHTEAVRTVSLLASAKLIFTSG 179

Query: 178 YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI 237
           YD IVRMW +EDG  IASS+PLGCTIRAVAAD KLLVAGGTDGFI  WRAVE L HLFD+
Sbjct: 180 YDMIVRMWDMEDGLYIASSRPLGCTIRAVAADTKLLVAGGTDGFIQGWRAVEGLKHLFDL 239

Query: 238 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG 297
            GSE  NT+FR+WEHEGPITSLALD TRIYSGSWDMTVR+WDR+ L+C+K+LRH DWV+ 
Sbjct: 240 KGSEVPNTEFRIWEHEGPITSLALDPTRIYSGSWDMTVRIWDRSSLECIKILRHGDWVWS 299

Query: 298 LAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH 357
           L PHDTTVASTSGSDVY+WDTNSG LLTV++ AHVGNT SLARSHT DF+FTGGEDGA+H
Sbjct: 300 LVPHDTTVASTSGSDVYVWDTNSGTLLTVIHSAHVGNTYSLARSHTEDFIFTGGEDGAMH 359

Query: 358 MYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPT 417
           M+EI     EANV  VATW+PH+GPV SLAFEFPWLVSA+ DG+LSL+DVRKLLR+ R +
Sbjct: 360 MFEITGPKPEANVFKVATWMPHSGPVYSLAFEFPWLVSASSDGRLSLVDVRKLLRTNRRS 419

Query: 418 SGKRVSRVIE-----VEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472
             K VSRV +     VEPPQRMLHGF  NL SVD+GADRIVCGGEEG+VRIWNFS+A E 
Sbjct: 420 LRKNVSRVTDKDRNNVEPPQRMLHGFGPNLFSVDVGADRIVCGGEEGVVRIWNFSKALER 479

Query: 473 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSG 532
           ER ARA+RGIRLENRMRRR+LQ EMSSKGGRTDQCSVAAKKNPM+ ++  VW NK GMSG
Sbjct: 480 ERTARAMRGIRLENRMRRRRLQIEMSSKGGRTDQCSVAAKKNPMHVDKSGVWRNKHGMSG 539

Query: 533 KLKA 536
           KLKA
Sbjct: 540 KLKA 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553682|ref|XP_003545182.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Glycine max]

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/577 (67%), Positives = 446/577 (77%), Gaps = 48/577 (8%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIESELN---------------------------- 32
           MAFEC   T VS+ LA+ V +     +ES L                             
Sbjct: 1   MAFECPNGTEVSQSLAHFVANPGIGIVESNLQLCPKSFTEGIATSKFVPDTKPESGKGVK 60

Query: 33  -------NLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELG 85
                  N    I+A  S L    +P  DV+ N   S ITDLPPALISEILNCLDPK+LG
Sbjct: 61  LKGASKINSKKGIKAPVSALNQSSIP-GDVVFNCGLS-ITDLPPALISEILNCLDPKDLG 118

Query: 86  IVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGF-SDDKSWKELFVEREFRSKT 144
           +VSCVSPIL R+AS+HHAWK+FYCERWGLP AS  +G+G   DDKSW+ELFVEREFRSKT
Sbjct: 119 VVSCVSPILQRVASEHHAWKQFYCERWGLPAASLAVGSGVVDDDKSWRELFVEREFRSKT 178

Query: 145 FLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR 204
           F+G+YSIDVLYGHTEAV T+F+LASAKL+FTSGYDS+VRMW +E+G SIASS+PLGCTIR
Sbjct: 179 FMGQYSIDVLYGHTEAVRTIFLLASAKLIFTSGYDSVVRMWDMENGLSIASSRPLGCTIR 238

Query: 205 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLT 264
           AVAAD+KLLVAGGTDGFIHCWRAVE LPH F+   ++ QNT+ RLW HEGPITSLALDLT
Sbjct: 239 AVAADRKLLVAGGTDGFIHCWRAVEDLPHSFEFRATQNQNTEVRLWGHEGPITSLALDLT 298

Query: 265 RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLL 324
           RIYSGSWD TVRVWDR  +KC  VLRHSDWV+ L PHDTTVASTSGSDVY+WDT+SG L+
Sbjct: 299 RIYSGSWDTTVRVWDRHSMKCTAVLRHSDWVWALVPHDTTVASTSGSDVYVWDTDSGTLV 358

Query: 325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 384
           T+V+ AHVGNT +LARSHTGDFLFTGGEDGAIHMYEI+ND  E+    VA W+PH+  V 
Sbjct: 359 TIVHNAHVGNTYALARSHTGDFLFTGGEDGAIHMYEIVNDGYESKAWHVAVWVPHSAAVY 418

Query: 385 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE-----VEPPQRMLHGFE 439
           SLAFEFPWLVSA+ DGKL+LIDVRKLL+  +   GKRVS+V       VEPPQRMLHGF+
Sbjct: 419 SLAFEFPWLVSASSDGKLALIDVRKLLKISKRALGKRVSKVKHLGGDIVEPPQRMLHGFK 478

Query: 440 CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS 499
            NL SVDIGA+RIVCGGEEG+VRIWNF++A EIERRARALRGIRL+NRMRRRKLQTE+S+
Sbjct: 479 SNLFSVDIGAERIVCGGEEGVVRIWNFTEALEIERRARALRGIRLDNRMRRRKLQTELSN 538

Query: 500 KGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 536
           K GR+DQCSVAAKKN +      +W  KRGMSGKLKA
Sbjct: 539 KSGRSDQCSVAAKKNAVT----CIW-PKRGMSGKLKA 570

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435995|ref|XP_002269919.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Vitis vinifera]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/521 (71%), Positives = 435/521 (83%), Gaps = 11/521 (2%)

Query: 21  DSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLD 80
           DS  + +  +  N   EIE       +     ND  S  +R  ITDLP ALISEILNCLD
Sbjct: 78  DSDHNTLIRDSGNSQSEIEIGIQKPSTSNPKVNDT-SGHYRRLITDLPSALISEILNCLD 136

Query: 81  PKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREF 140
           PKELG+VSCVS +L+RLAS+H  WK+FYCERWG P+ S     GFSD+KSW+ELFVEREF
Sbjct: 137 PKELGVVSCVSTVLNRLASEHSVWKDFYCERWGAPVVS-----GFSDEKSWRELFVEREF 191

Query: 141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG 200
           RSKTF GR+SIDVLYGHTEAV  VF+LASAKL+FTSGYDSIVRMW +E+G SIA S+PLG
Sbjct: 192 RSKTFRGRFSIDVLYGHTEAVRAVFLLASAKLIFTSGYDSIVRMWDMEEGLSIACSRPLG 251

Query: 201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 260
           CTIRAVAADKKLL+AGG+DGFIHCWRAVE L  LFD+ GS+  +T+FR+WEHEGP+T LA
Sbjct: 252 CTIRAVAADKKLLLAGGSDGFIHCWRAVEGLSCLFDLVGSQNLSTEFRIWEHEGPVTCLA 311

Query: 261 LDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNS 320
           LD+ RIYSGSWDMTVR+WDR+  K +KVLRH+DWV+GL P DTTVASTSGSDVY+WD +S
Sbjct: 312 LDIKRIYSGSWDMTVRIWDRSSFKVVKVLRHTDWVWGLVPRDTTVASTSGSDVYVWDADS 371

Query: 321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380
           G LLT+++ AHVGN  +LARSHTGDFLFTGGEDGAIHM+E+++DC E NVL V+TWIPH+
Sbjct: 372 GTLLTIISNAHVGNAYALARSHTGDFLFTGGEDGAIHMFEVVSDCMERNVLEVSTWIPHS 431

Query: 381 GPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-----IEVEPPQRML 435
           GPV+SLAFEFPWLVSA+ DG++SLIDVRKLL++ +P+ GK VS+V       VEPPQRML
Sbjct: 432 GPVHSLAFEFPWLVSASADGRMSLIDVRKLLQTCKPSLGKNVSKVRHRDHKSVEPPQRML 491

Query: 436 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT 495
           HGF CNL SVDIGADRIVCGGEEG+VRIWNFSQA E E+RARALRGIRLENRMRRR+LQ 
Sbjct: 492 HGFGCNLFSVDIGADRIVCGGEEGVVRIWNFSQALEAEQRARALRGIRLENRMRRRRLQI 551

Query: 496 EMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 536
           E++SKG RTDQCSVAA KNP+NG+R  VWHNKRGMSG++KA
Sbjct: 552 ELTSKGSRTDQCSVAASKNPINGDRSGVWHNKRGMSGRMKA 592

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501332|ref|XP_003519479.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Glycine max]

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/576 (67%), Positives = 446/576 (77%), Gaps = 46/576 (7%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIE-SELNNLNFE---------------------- 37
           MAFEC   T VS++LA+ V +     +E ++L+  +F                       
Sbjct: 1   MAFECLNNTEVSQNLAHFVANPGIGIVEPNQLSPKSFSEGVATSKFVPDTKSESGKGVKL 60

Query: 38  -----------IEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGI 86
                      I+A  S L    +P  DV+ N   S ITDLPPALISEILNCLDPK+LG+
Sbjct: 61  KGASTINSKKGIKAPVSALNQLSIP-GDVIFNCGLS-ITDLPPALISEILNCLDPKDLGV 118

Query: 87  VSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGF-SDDKSWKELFVEREFRSKTF 145
           VSCVS I  R+AS+H AWK+FYCERWGLP AS  + +G   DDKSW+ELFVEREFR+KTF
Sbjct: 119 VSCVSTIFQRVASEHGAWKQFYCERWGLPTASLAVDSGVVDDDKSWRELFVEREFRTKTF 178

Query: 146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA 205
           +GRYSIDVLYGHTEAV TVF+LASAKL+FTSGYDS+VRMW +E+G SIASS+PLGCTIRA
Sbjct: 179 MGRYSIDVLYGHTEAVRTVFLLASAKLIFTSGYDSVVRMWDMENGLSIASSRPLGCTIRA 238

Query: 206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR 265
           VAAD+KLLVAGGTDGFIHCWRAVE L HLF++  ++ QNT+ RLW HEGPITSLALDLTR
Sbjct: 239 VAADRKLLVAGGTDGFIHCWRAVEDLLHLFELRATQNQNTEVRLWGHEGPITSLALDLTR 298

Query: 266 IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLT 325
           IYSGSWD TVRVWDR  +KC  VLRHSDWV+ L PH+TTVASTSGSDVY+WDTNSG L+T
Sbjct: 299 IYSGSWDTTVRVWDRLSMKCTAVLRHSDWVWALVPHNTTVASTSGSDVYVWDTNSGALVT 358

Query: 326 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS 385
           +V+ AHVGNT +LARSHTGDFLFTGGEDGAIHMYEI+ND  E+    VA WIPH+  V S
Sbjct: 359 IVHNAHVGNTYALARSHTGDFLFTGGEDGAIHMYEIVNDGYESKTWHVAAWIPHSAAVYS 418

Query: 386 LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE-----VEPPQRMLHGFEC 440
           LAFEFPWLVSA+ DGKL+LIDVRKLLR  +   GKRVS+V       VEPPQRMLHGF+ 
Sbjct: 419 LAFEFPWLVSASSDGKLALIDVRKLLRISKRALGKRVSKVKHLGGDIVEPPQRMLHGFKS 478

Query: 441 NLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK 500
           NL SVDIGA+RIV GGEEG+VRIWNF++A EIERRARALRGIRLE+RMRRRKLQTE+S+K
Sbjct: 479 NLFSVDIGAERIVSGGEEGVVRIWNFTEALEIERRARALRGIRLEHRMRRRKLQTELSNK 538

Query: 501 GGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 536
            GR+DQCSVAAKKN +      +W  KRGMSGKLKA
Sbjct: 539 SGRSDQCSVAAKKNSVT----CIWPTKRGMSGKLKA 570

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449514919|ref|XP_004164515.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Cucumis sativus]

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/556 (67%), Positives = 438/556 (78%), Gaps = 23/556 (4%)

Query: 1   MAFECQRVTRVSKDLANSVEDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLH 60
           MAFECQ+   +  D     ++  + Q      + +F +EA    +ES +      L++ H
Sbjct: 1   MAFECQKSAGIYTDSRVIGKNYCEKQTA---GSSSFNLEAESEGIESDKSEIITSLTSKH 57

Query: 61  ---------RSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCER 111
                      +ITDLPPA+ISEILNCLDPKELGIVSCVS +LH +AS+HH WKEFY ER
Sbjct: 58  LLSKNAPVGGRSITDLPPAIISEILNCLDPKELGIVSCVSTVLHSIASEHHVWKEFYSER 117

Query: 112 WGLPIA--SAPL-GAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLA 168
           WGLP+   SAP+   G SD++SWK+LFVEREFRSKTF+GRY+++VL+GHTEAV TVFVLA
Sbjct: 118 WGLPVPAQSAPVVPNGLSDERSWKDLFVEREFRSKTFMGRYTMEVLHGHTEAVRTVFVLA 177

Query: 169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV 228
           SAKL+FTSGYDSIVR+W LE+G SIASS+ LGCTIRA+AAD KLLVAGGTDGFIHCW+AV
Sbjct: 178 SAKLIFTSGYDSIVRIWELEEGLSIASSRSLGCTIRALAADTKLLVAGGTDGFIHCWKAV 237

Query: 229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV 288
           E L +LFD+ G    N +FRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR   +CL +
Sbjct: 238 EGLSYLFDVKGPLNHNIEFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRFSHRCLNI 297

Query: 289 LRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF 348
           LRH DWV+GL PHDTTVASTSGSDVY+WDTNSG L TV++ AHVG   +LARSHTGDFLF
Sbjct: 298 LRHGDWVWGLVPHDTTVASTSGSDVYVWDTNSGELATVIHEAHVGYAYALARSHTGDFLF 357

Query: 349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 408
           TGGEDGAIHM++I N   + +  LV +WIPH+GPV SLAFEFPWLVSA+ DGKLSLIDVR
Sbjct: 358 TGGEDGAIHMFDITNRHVDTSAQLVGSWIPHSGPVYSLAFEFPWLVSASSDGKLSLIDVR 417

Query: 409 KLLRSGRPTSGKRVSR-----VIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRI 463
            LLR+ + T  KR SR      I VEPPQRMLHGF  NL  VDIG DRIVCGGEEG+VRI
Sbjct: 418 PLLRTKKRTLWKRDSRGQHVQSISVEPPQRMLHGFGSNLFGVDIGMDRIVCGGEEGVVRI 477

Query: 464 WNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK--GGRTDQCSVAAKKNPMN-GNR 520
           WNF+QA E ERRARALRGIRLENRMRRR+LQ EM++K  G R+DQCS AAKK PMN G+R
Sbjct: 478 WNFTQALEAERRARALRGIRLENRMRRRRLQIEMNTKSGGARSDQCSFAAKKTPMNGGDR 537

Query: 521 RSVWHNKRGMSGKLKA 536
            SVWHNKRG+SGKLKA
Sbjct: 538 VSVWHNKRGVSGKLKA 553

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463887|ref|XP_004149662.1| PREDICTED: F-box/WD-40 repeat-containing protein At5g21040-like [Cucumis sativus]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/522 (70%), Positives = 424/522 (81%), Gaps = 20/522 (3%)

Query: 35  NFEIEATKSTLESKQLPCNDVLSNLH---------RSTITDLPPALISEILNCLDPKELG 85
           +F +EA    +ES +      L++ H           +ITDLPPA+ISEILNCLDPKELG
Sbjct: 78  SFNLEAESEGIESDKSEIITSLTSKHLLSKNAPVGGRSITDLPPAIISEILNCLDPKELG 137

Query: 86  IVSCVSPILHRLASDHHAWKEFYCERWGLPIA--SAPL-GAGFSDDKSWKELFVEREFRS 142
           IVSCVS +LH +AS+HH WKEFY ERWGLP+   SAP+   G SD++SWK+LFVEREFRS
Sbjct: 138 IVSCVSTVLHSIASEHHVWKEFYSERWGLPVPAQSAPVVPNGLSDERSWKDLFVEREFRS 197

Query: 143 KTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT 202
           KTF+GRY+++VL+GHTEAV TVFVLASAKL+FTSGYDSIVR+W LE+G SIASS+ LGCT
Sbjct: 198 KTFMGRYTMEVLHGHTEAVRTVFVLASAKLIFTSGYDSIVRIWELEEGLSIASSRSLGCT 257

Query: 203 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD 262
           IRA+AAD KLLVAGGTDGFIHCW+AVE L +LFD+ G    N +FRLWEHEGPITSLALD
Sbjct: 258 IRALAADTKLLVAGGTDGFIHCWKAVEGLSYLFDVKGPLNHNIEFRLWEHEGPITSLALD 317

Query: 263 LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGC 322
           LTRIYSGSWDMTVRVWDR   +CL +LRH DWV+GL PHDTTVASTSGSDVY+WDTNSG 
Sbjct: 318 LTRIYSGSWDMTVRVWDRFSHRCLNILRHGDWVWGLVPHDTTVASTSGSDVYVWDTNSGE 377

Query: 323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP 382
           L TV++ AHVG   +LARSHTGDFLFTGGEDGAIHM++I N   + +  LV +WIPH+GP
Sbjct: 378 LATVIHEAHVGYAYALARSHTGDFLFTGGEDGAIHMFDITNRHVDTSAQLVGSWIPHSGP 437

Query: 383 VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR-----VIEVEPPQRMLHG 437
           V SLAFEFPWLVSA+ DGKLSLIDVR LLR+ + T  KR SR      I VEPPQRMLHG
Sbjct: 438 VYSLAFEFPWLVSASSDGKLSLIDVRPLLRTKKRTLWKRDSRGQHVQSISVEPPQRMLHG 497

Query: 438 FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM 497
           F  NL  VDIG DRIVCGGEEG+VRIWNF+QA E ERRARALRGIRLENRMRRR+LQ EM
Sbjct: 498 FGSNLFGVDIGMDRIVCGGEEGVVRIWNFTQALEAERRARALRGIRLENRMRRRRLQIEM 557

Query: 498 SSK--GGRTDQCSVAAKKNPMN-GNRRSVWHNKRGMSGKLKA 536
           ++K  G R+DQCS AAKK PMN G+R SVWHNKRG+SGKLKA
Sbjct: 558 NTKSGGARSDQCSFAAKKTPMNGGDRVSVWHNKRGVSGKLKA 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493575|ref|XP_003617076.1| F-box/WD-40 repeat-containing protein [Medicago truncatula] gi|355518411|gb|AET00035.1| F-box/WD-40 repeat-containing protein [Medicago truncatula]

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/581 (62%), Positives = 435/581 (74%), Gaps = 51/581 (8%)

Query: 1   MAFECQRVTRVSKDL------------------------------ANSVEDSLQSQI--- 27
           MAF+C +  +VS++L                               N+  +S + +I   
Sbjct: 1   MAFDCPQSIKVSQNLVENPGISIDIVELNPKPNSKAISISFPDFVTNTKSESGKGEIFKG 60

Query: 28  ESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCLDPKELGIV 87
           +S+LN+      A+   L    +P + V+ N    +ITDLPP LISEILNCLDPKELGIV
Sbjct: 61  KSKLNSKKGIKAASAGALNQSSVPGDVVIGNCR--SITDLPPVLISEILNCLDPKELGIV 118

Query: 88  SCVSPILHRLASDHHAWKEFYCERWGLPI-------ASAPLGAGFSDDKSWKELFVEREF 140
           SCVS IL  LAS+HHAWKEFYCERWGLP        + + +G    D+KSWK++FVER++
Sbjct: 119 SCVSLILRSLASEHHAWKEFYCERWGLPAVPEAVLDSDSGVGDSVKDEKSWKDIFVERDY 178

Query: 141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG 200
           RSKTF+GRYS+DVLYGHTEAV TVF+LAS KL+FTSGYD++VRMW++E G S+ASSKPLG
Sbjct: 179 RSKTFMGRYSMDVLYGHTEAVRTVFLLASTKLIFTSGYDTVVRMWNMESGLSVASSKPLG 238

Query: 201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA 260
           CTIRAVAAD +LLVAGGTDGFIHCWRAVE LPHLF++  S++   + RLW H+GP+TSLA
Sbjct: 239 CTIRAVAADTRLLVAGGTDGFIHCWRAVEGLPHLFELRNSQQNKNEVRLWGHDGPVTSLA 298

Query: 261 LDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNS 320
           LDLTRIYSGSWD TVRVWDR  +KC  VLRHSDWV+GL PHDTTV STSGS+VY+WDTNS
Sbjct: 299 LDLTRIYSGSWDTTVRVWDRHSMKCTVVLRHSDWVWGLVPHDTTVVSTSGSNVYVWDTNS 358

Query: 321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT 380
           G L TVV  AHVGNT +LARSHTGDF+FTGGEDG+IHMYEI++       L VATW PH+
Sbjct: 359 GNLATVVLNAHVGNTYALARSHTGDFIFTGGEDGSIHMYEIVDGSYVTEALHVATWDPHS 418

Query: 381 GPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-----IEVEPPQRML 435
           GPV SLAFEFPWLVSA+ DGKL+LIDVRKLLR  +   GKR ++      + VEPPQRML
Sbjct: 419 GPVYSLAFEFPWLVSASSDGKLALIDVRKLLRRSKRAIGKRATKAKYSGEVNVEPPQRML 478

Query: 436 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT 495
           HGF+ NL SV IGADRIVCGGEEG+VRIWNF++A EIE R RALRG+RLENRMRRRK QT
Sbjct: 479 HGFKSNLFSVGIGADRIVCGGEEGVVRIWNFTEALEIESRVRALRGMRLENRMRRRKNQT 538

Query: 496 EMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 536
           E++SKGG++DQCS AAKK+ +      +W +KRGM GK KA
Sbjct: 539 ELNSKGGKSDQCSAAAKKSSVT----CIWPSKRGMGGKTKA 575

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420385|ref|NP_568408.1| F-box protein 2 [Arabidopsis thaliana] gi|334187807|ref|NP_001190352.1| F-box protein 2 [Arabidopsis thaliana] gi|75332042|sp|Q94AD8.1|FBW3_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At5g21040 gi|15081723|gb|AAK82516.1| T10F18_70/T10F18_70 [Arabidopsis thaliana] gi|27363380|gb|AAO11609.1| At5g21040/T10F18_70 [Arabidopsis thaliana] gi|332005539|gb|AED92922.1| F-box protein 2 [Arabidopsis thaliana] gi|332005540|gb|AED92923.1| F-box protein 2 [Arabidopsis thaliana]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/544 (65%), Positives = 429/544 (78%), Gaps = 13/544 (2%)

Query: 1   MAFECQRVTRVSKDLAN-----SVEDSLQSQIESELNNLNFEIEATKSTL---ESKQLPC 52
           M FECQ     + D  +     + +  + +    E+ N+    +  K TL    SKQL  
Sbjct: 1   MEFECQERLEAANDQRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLLS 60

Query: 53  NDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW 112
           +  LS    +TI DLP ALISEILNCLDPKELG+VSCVS  LHRLAS+HHAWKEFY ERW
Sbjct: 61  DKDLS----TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRERW 116

Query: 113 GLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKL 172
           GLP+      +G SD++SWK+LFVEREFRS+TFLGRYSID LYGHTEAV TVF+LASAKL
Sbjct: 117 GLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVFLLASAKL 176

Query: 173 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP 232
           +FTSGYDSIVRMW +E+G SIA+SKPLGCTIRA+AAD KLLVAGGTDGFIHCW++++ L 
Sbjct: 177 VFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLR 236

Query: 233 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS 292
           +LFD++G +K+ T+FRLW HEGPITSLALD+T I+SGSWDM+VR+WDR+ +KC+K LRHS
Sbjct: 237 NLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHS 296

Query: 293 DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE 352
           DWV+GLAPH+TT+ASTSGSDVYIWD +S   L ++  AH G T SLARSHTGDFLFTGGE
Sbjct: 297 DWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGGE 356

Query: 353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLR 412
           DG I M+EI    +E +V+L++ W+PHT PV SL+FEFPWLVSA+GDGKL+LIDVRKLL+
Sbjct: 357 DGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLK 416

Query: 413 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472
           + R    KR+S    VEPPQRMLHGF  NL SVD+G DRIVCGGEEG VRIWNF+QA EI
Sbjct: 417 TNRCAYSKRISSST-VEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALEI 475

Query: 473 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSG 532
           ERR RAL+G+R ENRMRRR++Q EM++K GR DQCS+AA KNP+NG R   WH+KR  SG
Sbjct: 476 ERRTRALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRASG 535

Query: 533 KLKA 536
           K KA
Sbjct: 536 KAKA 539

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812291|ref|XP_002874029.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319866|gb|EFH50288.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/525 (67%), Positives = 425/525 (80%), Gaps = 11/525 (2%)

Query: 18  SVEDSLQSQIES---ELNNLNFEIEATKSTL---ESKQLPCNDVLSNLHRSTITDLPPAL 71
           S  D+L  +IE+   E+ ++    +  K TL    SKQL  +  LS    +TI DLP AL
Sbjct: 11  SESDTLNLRIENGSVEIPSVKLSCQQKKGTLVPSGSKQLLSDKDLS----TTIIDLPQAL 66

Query: 72  ISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSW 131
           ISEILNCLDPKELG+VSCVS  LH+LAS+HHAWKEFY ERWGLP+      +G SD++SW
Sbjct: 67  ISEILNCLDPKELGLVSCVSTCLHKLASEHHAWKEFYRERWGLPVVFGATSSGLSDERSW 126

Query: 132 KELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF 191
           KELF EREFRS+ FLGRYSID LYGHTEAV  VF+LASAKL+FTSGYDSIVRMW +E+G 
Sbjct: 127 KELFAEREFRSRNFLGRYSIDTLYGHTEAVRIVFLLASAKLVFTSGYDSIVRMWDMEEGL 186

Query: 192 SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE 251
           SIA+SKPLGCTIRA+AAD KLLVAGGTDGFIHCW++++ L +LFD++G +K+ T FRLW 
Sbjct: 187 SIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGLRNLFDLTGFQKEKTDFRLWG 246

Query: 252 HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGS 311
           HEGPITSLALD+T I+SGSWDM+VR+WDR+ +KC+K LRHSDWV+GLAPH+T++ASTSGS
Sbjct: 247 HEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHSDWVWGLAPHETSLASTSGS 306

Query: 312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL 371
           DVYIWD +    LT++  AH G T SLARSHTGDFLFTGGEDG I M+EI    +E +V+
Sbjct: 307 DVYIWDIDRETPLTIIRDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIRRYGSETSVV 366

Query: 372 LVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP 431
           L++ W+PHT PV SL+FEFPWLVSA+GDGKL+LIDVRKLL++ R    +R+S    VEPP
Sbjct: 367 LISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLLKTNRRAYSRRISSST-VEPP 425

Query: 432 QRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR 491
           QRMLHGF  NL SVD+G DRIVCGGEEGIVRIWNF+QA EIERRARAL+G+RLENRMRRR
Sbjct: 426 QRMLHGFGSNLFSVDVGCDRIVCGGEEGIVRIWNFTQALEIERRARALKGMRLENRMRRR 485

Query: 492 KLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMSGKLKA 536
           ++Q EM++K GR DQCS+AA KNP+NG+R   WH+KR  SGK KA
Sbjct: 486 RMQMEMNAKSGRPDQCSIAAHKNPINGDRNRAWHSKRRASGKAKA 530

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
TAIR|locus:2147077	539	FBX2 "AT5G21040" [Arabidopsis	0.988	0.983	0.658	5.1e-193
CGD|CAL0004039	735	orf19.3301 [Candida albicans (	0.363	0.265	0.266	2.5e-13
ASPGD|ASPL0000005389	678	sconB [Emericella nidulans (ta	0.356	0.281	0.262	3e-12
SGD|S000001308	640	MET30 "F-box protein containin	0.361	0.303	0.285	1.1e-11
ZFIN|ZDB-GENE-030131-6305	527	fbxw11a "F-box and WD-40 domai	0.481	0.489	0.229	4.3e-11
ZFIN|ZDB-GENE-090313-79	760	fbxw7 "F-box and WD repeat dom	0.365	0.257	0.253	1.7e-10
POMBASE|SPAC57A10.05c	605	pof1 "F-box/WD repeat protein	0.369	0.327	0.288	2e-10
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.305	0.454	0.335	2.2e-10
UNIPROTKB|F1NM37	812	TBL3 "Uncharacterized protein"	0.559	0.369	0.237	6.6e-10
UNIPROTKB|F1N9W1	587	FBXW7 "Uncharacterized protein	0.365	0.333	0.248	6.6e-10

TAIR|locus:2147077 FBX2 "AT5G21040" [Arabidopsis thaliana (taxid:3702)]

 Score = 1870 (663.3 bits), Expect = 5.1e-193, P = 5.1e-193
 Identities = 359/545 (65%), Positives = 428/545 (78%)

Query:     1 MAFECQRVTRVSKDLANSVEDSLQSQIES------ELNNLNFEIEATKSTLE---SKQLP 51
             M FECQ     + D   S    L + +        E+ N+    +  K TL    SKQL 
Sbjct:     1 MEFECQERLEAAND-QRSESGLLNTDLRIGNDGSVEIPNVKLCCQKKKGTLVPSGSKQLL 59

Query:    52 CNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCER 111
              +  LS    +TI DLP ALISEILNCLDPKELG+VSCVS  LHRLAS+HHAWKEFY ER
Sbjct:    60 SDKDLS----TTIIDLPQALISEILNCLDPKELGLVSCVSTYLHRLASEHHAWKEFYRER 115

Query:   112 WGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAK 171
             WGLP+      +G SD++SWK+LFVEREFRS+TFLGRYSID LYGHTEAV TVF+LASAK
Sbjct:   116 WGLPVVFGAASSGLSDERSWKDLFVEREFRSRTFLGRYSIDTLYGHTEAVRTVFLLASAK 175

Query:   172 LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL 231
             L+FTSGYDSIVRMW +E+G SIA+SKPLGCTIRA+AAD KLLVAGGTDGFIHCW++++ L
Sbjct:   176 LVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFIHCWKSLDGL 235

Query:   232 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH 291
              +LFD++G +K+ T+FRLW HEGPITSLALD+T I+SGSWDM+VR+WDR+ +KC+K LRH
Sbjct:   236 RNLFDLTGFQKEKTEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRH 295

Query:   292 SDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG 351
             SDWV+GLAPH+TT+ASTSGSDVYIWD +S   L ++  AH G T SLARSHTGDFLFTGG
Sbjct:   296 SDWVWGLAPHETTLASTSGSDVYIWDVSSETPLAIIPDAHEGTTYSLARSHTGDFLFTGG 355

Query:   352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLL 411
             EDG I M+EI    +E +V+L++ W+PHT PV SL+FEFPWLVSA+GDGKL+LIDVRKLL
Sbjct:   356 EDGGIKMFEIRRYGSETSVVLISQWMPHTSPVYSLSFEFPWLVSASGDGKLALIDVRKLL 415

Query:   412 RSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 471
             ++ R    KR+S    VEPPQRMLHGF  NL SVD+G DRIVCGGEEG VRIWNF+QA E
Sbjct:   416 KTNRCAYSKRISSST-VEPPQRMLHGFGSNLFSVDVGYDRIVCGGEEGTVRIWNFTQALE 474

Query:   472 IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRGMS 531
             IERR RAL+G+R ENRMRRR++Q EM++K GR DQCS+AA KNP+NG R   WH+KR  S
Sbjct:   475 IERRTRALKGMRHENRMRRRRMQMEMNAKNGRPDQCSIAAHKNPINGERNRAWHSKRRAS 534

Query:   532 GKLKA 536
             GK KA
Sbjct:   535 GKAKA 539

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

CGD|CAL0004039 orf19.3301 [Candida albicans (taxid:5476)]

 Score = 193 (73.0 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
 Identities = 58/218 (26%), Positives = 96/218 (44%)

Query:   129 KSWKELFVEREFRSKTFL-GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL 187
             + WK ++ ER    K +  G ++I    GH++ V  +    + K L T  YD+ +++W +
Sbjct:   353 RPWKSVYSERFKLEKNWRKGTHTIKTFTGHSDGVTCLQF--NRKYLMTGSYDTTIKIWKI 410

Query:   188 EDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 247
             + G  + +       +RA+  D + L++GG D  I  W       H      +      +
Sbjct:   411 DSGECVKTLTGHTKGVRALVFDNQKLISGGLDSTIKVWNY-----HTGQCIAT------Y 459

Query:   248 RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVAS 307
             R   HE  + S+      I SGS D TVRVW      C  +  H+DWV  +  H  +   
Sbjct:   460 R--GHEDAVVSVDFTNKSIVSGSADHTVRVWHVDSRTCYTLRGHTDWVNHVKIHSASNTI 517

Query:   308 TSGSD---VYIWDTNSG-CLLT---VVNGAHVGNTKSL 338
              S SD   + +WD NS  C+     + N  H+G  + +
Sbjct:   518 FSASDDTTIRMWDMNSNECIKVFGGMENNGHIGQVQCI 555

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0046685 "response to arsenic-containing substance" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

ASPGD|ASPL0000005389 sconB [Emericella nidulans (taxid:162425)]

 Score = 171 (65.3 bits), Expect = 3.0e-12, Sum P(3) = 3.0e-12
 Identities = 57/217 (26%), Positives = 95/217 (43%)

Query:   129 KSWKELFVEREFRSKTF--LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH 186
             + WKE++ +R F+  T    GR SI    GHT  V+ +       +L T  YD+ +++W 
Sbjct:   319 RPWKEVYKDR-FKVGTNWKYGRCSIKTFKGHTNGVMCLQF--EDNILATGSYDTTIKIWD 375

Query:   187 LEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW--RAVEVLPHLFDISGSEKQN 244
              E G  + + +     IR +  D   L++G  D  I  W  R  E +      +G     
Sbjct:   376 TETGEELRTLRGHESGIRCLQFDDTKLISGSMDRTIKVWNWRTGECIS---TYTG----- 427

Query:   245 TQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTT 304
                    H G +  L  D + + SGS D TV++W+        +  H+DWV  +    ++
Sbjct:   428 -------HRGGVIGLHFDASILASGSVDKTVKIWNFEDKSTFSLRGHTDWVNAVRVDTSS 480

Query:   305 VASTSGSD---VYIWDTNSGCLLTVVNGAHVGNTKSL 338
                 S SD   V +WD ++   +   +G HVG  + +
Sbjct:   481 RTVFSASDDCTVRLWDLDTKTCIRTFHG-HVGQVQQV 516

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0046685 "response to arsenic-containing substance" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

SGD|S000001308 MET30 "F-box protein containing five copies of the WD40 motif" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 172 (65.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
 Identities = 61/214 (28%), Positives = 93/214 (43%)

Query:   129 KSWKELFVER-EFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL 187
             + WK ++ ER +  S    G   I    GH + VLT+    + +LLFT  YDS + +W L
Sbjct:   272 RPWKVIYRERFKVESNWRKGHCRIQEFKGHMDGVLTLQF--NYRLLFTGSYDSTIGIWDL 329

Query:   188 EDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF 247
               G  I         ++ +  D + L+ G  D  I  W           I+G E  +T +
Sbjct:   330 FTGKLIRRLSGHSDGVKTLYFDDRKLITGSLDKTIRVWNY---------ITG-ECIST-Y 378

Query:   248 RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVAS 307
             R   H   + S+      I SGS D TV+VW      C  +  H++WV  +  H  + + 
Sbjct:   379 R--GHSDSVLSVDSYQKVIVSGSADKTVKVWHVESRTCYTLRGHTEWVNCVKLHPKSFSC 436

Query:   308 TSGSD---VYIWDTNSGCLLTVVNGAHVGNTKSL 338
              S SD   + +WD  +   L V  G HVG  + +
Sbjct:   437 FSCSDDTTIRMWDIRTNSCLKVFRG-HVGQVQKI 469

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0019344 "cysteine biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;IGI;IPI

GO:0000209 "protein polyubiquitination" evidence=IMP

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0043224 "nuclear SCF ubiquitin ligase complex" evidence=IDA

GO:0046685 "response to arsenic-containing substance" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IDA

GO:0000114 "regulation of transcription involved in G1 phase of mitotic cell cycle" evidence=IMP

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IMP

GO:0000087 "M phase of mitotic cell cycle" evidence=IMP

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030131-6305 fbxw11a "F-box and WD-40 domain protein 11a" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 4.3e-11, Sum P(2) = 4.3e-11
 Identities = 64/279 (22%), Positives = 125/279 (44%)

Query:   151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
             + VL GHT +VL +      +++ T   DS VR+W       ++S + L   I    A  
Sbjct:   258 LKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVW------DVSSGEVLNTLIHHNEAVL 309

Query:   211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
              L    G    + C +   +   ++D++ +   + +  L  H   +  +  D   I S S
Sbjct:   310 HLRFCNGL--MVTCSKDRSIA--VWDMASATDISLRRVLVGHRAAVNVVDFDDKYIVSAS 365

Query:   271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSGCLLTVVN 328
              D T++VW  +  + ++ L  H   +  L   D  V S +S + + +WD   G  L V+ 
Sbjct:   366 GDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 425

Query:   329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIPHTGPVNS 385
             G H    + +   +    + +G  DG I ++++   ++    A+ L + T + H+G V  
Sbjct:   426 G-HEELVRCIRFDNKR--IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 482

Query:   386 LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR 424
             L F+   ++S++ D  + + D   +  +G+ + G+  SR
Sbjct:   483 LQFDEFQIISSSHDDTILIWDFLNVSSNGQ-SDGRSPSR 520

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-090313-79 fbxw7 "F-box and WD repeat domain containing 7" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 54/213 (25%), Positives = 88/213 (41%)

Query:   151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
             I  LYGHT  V  + +    K + +   D+ +R+W +E G  +         +R V  D 
Sbjct:   507 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 564

Query:   211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
             + +V+G  D  +  W      P        E +     L  H   + SL  D   + SGS
Sbjct:   565 RRVVSGAYDFMVKVWD-----P--------ETETCLHTLQGHTNRVYSLQFDGIHVVSGS 611

Query:   271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSGCLLTVVN 328
              D ++RVWD     C+  L  H     G+   D  + S  + S V IWD  +G  L  + 
Sbjct:   612 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 671

Query:   329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
             G H   +         +F+ T  +DG + ++++
Sbjct:   672 GPHKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 704

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

POMBASE|SPAC57A10.05c pof1 "F-box/WD repeat protein protein Pof1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 180 (68.4 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 65/225 (28%), Positives = 106/225 (47%)

Query:   151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAA 208
             I +L+GHT++VL +     + LL +   D  V++WH   G  I      G   ++R +  
Sbjct:   346 ISILHGHTDSVLCLTF--DSTLLVSGSADCTVKLWHFSGGKRITLRGHTGPVNSVRIIR- 402

Query:   209 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYS 268
             D+ L+++G  D  I  W ++E    L   S             H GP+ SLAL  +R++S
Sbjct:   403 DRGLVLSGSDDSTIKIW-SLETNTCLHTFSA------------HIGPVQSLALADSRLFS 449

Query:   269 GSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAP-HDTTVASTSGSDVYIWDTNSGCLLTV 326
              S D T++ WD    KC+  L  H + V+ +A  H   ++      V +W+    C+ T+
Sbjct:   450 CSLDGTIKQWDIEKKKCVHTLFGHIEGVWEIAADHLRLISGAHDGVVKVWEACE-CVHTL 508

Query:   327 VNGAHVGNTKSLARSHTGDF-LFTGGEDGAIHMYEIINDCTEANV 370
              N  H     S+A    GD  + +G EDG I+++   N   E+ V
Sbjct:   509 KN--HSEPVTSVA---LGDCEVVSGSEDGKIYLWLFNNAPNESPV 548

GO:0005634 "nucleus" evidence=IDA

GO:0007346 "regulation of mitotic cell cycle" evidence=IC

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IPI

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IPI

GO:0071276 "cellular response to cadmium ion" evidence=IEP

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 61/182 (33%), Positives = 90/182 (49%)

Query:   154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FS-IASSKPLGCTIRAVAADKK 211
             L GHT+AV  V    + + L +S  D ++++W   DG F    S   LG +  A ++D +
Sbjct:    68 LAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSR 127

Query:   212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 271
             LLV+G  D  +  W  +     L  + G    N  F    +  P ++L      I SGS+
Sbjct:   128 LLVSGSDDKTLKVWE-LSTGKSLKTLKGHS--NYVFCC--NFNPQSNL------IVSGSF 176

Query:   272 DMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG-CLLTV 326
             D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG CL T+
Sbjct:   177 DESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 236

Query:   327 VN 328
             ++
Sbjct:   237 ID 238

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|F1NM37 TBL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 78/329 (23%), Positives = 134/329 (40%)

Query:   143 KTF-LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFSIASSKPLG 200
             K F L      +LYGHTE +L + V     +  +   D  +R+W + +DG  +  ++ LG
Sbjct:   370 KVFELSTSHCQILYGHTETILALDVFRKGLMFVSCAKDKSIRVWRMNKDGRVVCVAQGLG 429

Query:   201 CT--IRAVAADK---KLLVAGGTDGFIHCWRAVEVLPHLFD---ISGSEKQNTQFRLWEH 252
                 + AV+  +     +V    D  I  W   E L        ISG E  + Q     H
Sbjct:   430 HAHGVGAVSCSRLKESFVVTSSQDCTIKVWNIPESLTSKAKAALISGPETLHAQMTERGH 489

Query:   253 EGPITSLALDLTR--IYSGSWDMTVRVW---DRALLKCLKVLRHSDWVYGLAPHDTTVAS 307
             +  I S+A+      I +GS D   ++W   D +LL      +   W    +P D  +A+
Sbjct:   490 DKDINSVAVSPNDKLIATGSQDRLAKLWSCPDCSLLGVFTGHKRGIWCVQFSPVDQILAT 549

Query:   308 TSGSDVY-IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI-INDC 365
             +S      +W       L    G H  +   +     G  L +GG DG + ++ I  N+C
Sbjct:   550 SSADGTLKLWGLQDFSCLKTFEG-HDASVLKIIFVSRGTQLLSGGSDGLLKLWTIKTNEC 608

Query:   366 TEA-NVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLI-DVRKLLRSGRPTSGKRVS 423
              +  +      W  HT   + +      +V+A+ D  ++L  DV ++ +       KR  
Sbjct:   609 VKTLDGHEDKIWGLHTNKQDDM------VVTASSDSSITLWKDVTEIEQE--EAQAKREE 660

Query:   424 RVIEVEPPQRMLHGFE-CNLLSVDIGADR 451
             ++++ +    +LH       L + I  DR
Sbjct:   661 QIMKEQELSNLLHEKRYLKALGLAISLDR 689

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|F1N9W1 FBXW7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 175 (66.7 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 53/213 (24%), Positives = 88/213 (41%)

Query:   151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
             I  LYGHT  V  + +    K + +   D+ +R+W +E G  +         +R V  D 
Sbjct:   334 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 391

Query:   211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
             + +V+G  D  +  W      P        E +     L  H   + SL  D   + SGS
Sbjct:   392 RRVVSGAYDFMVKVWD-----P--------ETETCLHTLQGHTNRVYSLQFDGIHVVSGS 438

Query:   271 WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAS-TSGSDVYIWDTNSGCLLTVVN 328
              D ++RVWD     C+  L  H     G+   D  + S  + S V IWD  +G  L  + 
Sbjct:   439 LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 498

Query:   329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
             G +   +         +F+ T  +DG + ++++
Sbjct:   499 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 531

GO:0001570 "vasculogenesis" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007062 "sister chromatid cohesion" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030324 "lung development" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0045741 "positive regulation of epidermal growth factor-activated receptor activity" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IEA

GO:2000060 "positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94AD8	FBW3_ARATH	No assigned EC number	0.6562	0.9906	0.9851	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090125 hypothetical protein (543 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	536
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-35
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-06
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-04
pfam07106	169	pfam07106, TBPIP, Tat binding protein 1(TBP-1)-int	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  134 bits (339), Expect = 1e-35
 Identities = 89/326 (27%), Positives = 134/326 (41%), Gaps = 47/326 (14%)

Query: 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-- 207
               L GHT  V  V      KLL T   D  +++W LE G  + + K     +R VA  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR 265
           AD   L +G +D  I  W          D+   E   T      H   ++S+A   D   
Sbjct: 61  ADGTYLASGSSDKTIRLW----------DLETGECVRTLT---GHTSYVSSVAFSPDGRI 107

Query: 266 IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH-DTTVASTSGSD--VYIWDTNSG 321
           + S S D T++VWD    KCL  LR H+DWV  +A   D T  ++S  D  + +WD  +G
Sbjct: 108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167

Query: 322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG 381
             +  + G H G   S+A S  G+ L +   DG I ++++      +    + T   H  
Sbjct: 168 KCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL------STGKCLGTLRGHEN 220

Query: 382 PVNSLAFEFP--WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE 439
            VNS+AF      L S + DG + + D+R               + +         H   
Sbjct: 221 GVNSVAFSPDGYLLASGSEDGTIRVWDLRT----------GECVQTLS-------GHTNS 263

Query: 440 CNLLSVDIGADRIVCGGEEGIVRIWN 465
              L+      R+  G  +G +RIW+
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 36/231 (15%)

Query: 252 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA 306
           H G +T +A   D   + +GS D T++VWD    + L+ L+ H+  V  +A     T +A
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67

Query: 307 STSG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 365
           S S    + +WD  +G  +  + G H     S+A S  G  L +   D  I ++++    
Sbjct: 68  SGSSDKTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG- 125

Query: 366 TEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVS 423
                  + T   HT  VNS+AF      V+++  DG + L D+R         +GK V 
Sbjct: 126 -----KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR---------TGKCV- 170

Query: 424 RVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEI 472
                      L G    + SV    D  +++    +G +++W+ S    +
Sbjct: 171 ---------ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.9 bits (224), Expect = 2e-19
 Identities = 76/345 (22%), Positives = 131/345 (37%), Gaps = 51/345 (14%)

Query: 146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------FSIASSKPL 199
           L   S  +L GH +++ ++      +LL +   D  +++W L++G              +
Sbjct: 53  LPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSV 112

Query: 200 GCTIRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS 258
                +      +L+A    DG +  W          D+S   K         H   +TS
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLW----------DLSTPGKLIRTLEG--HSESVTS 160

Query: 259 LAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSD 312
           LA            S D T+++WD    K L  L  H+D V  LA  P    + ++  SD
Sbjct: 161 LAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 313 --VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV 370
             + +WD ++G LL      H  +  S   S  G  L +G  DG I ++++ +  +    
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSF-SPDGSLLASGSSDGTIRLWDLRSSSS---- 275

Query: 371 LLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 428
            L+ T   H+  V S+AF  +   L S + DG + L D+                    +
Sbjct: 276 -LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG---------------KLL 319

Query: 429 EPPQRMLHGFECNLLSVDIGADRIVCGG-EEGIVRIWNFSQAFEI 472
                  H    + LS       +V GG ++G +R+W+      +
Sbjct: 320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL 364

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.9 bits (146), Expect = 8e-10
 Identities = 57/221 (25%), Positives = 85/221 (38%), Gaps = 58/221 (26%)

Query: 147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV 206
               +  L GH+ +VL+V      KLL +   D  VR+W LE G  ++S    G      
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG------ 326

Query: 207 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT 264
                                                        HEGP++SL+   D +
Sbjct: 327 ---------------------------------------------HEGPVSSLSFSPDGS 341

Query: 265 RIYSG-SWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD---VYIWDTNS 320
            + SG S D T+R+WD    K LK L     V  ++        +SGS    V +WD ++
Sbjct: 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLST 401

Query: 321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
           G LL  ++G H     SL  S  G  L +G  D  I ++++
Sbjct: 402 GSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 34/191 (17%)

Query: 285 CLKVLR-HSDWVYGLA--PHDTTVASTSGSD-VYIWDTNSGCLLTVVNGAHVGNTKSLAR 340
             + L+ H+  V  +A  P    +A+ SG   + +WD  +G LL  + G H G  + +A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAA 59

Query: 341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAG 398
           S  G +L +G  D  I ++++           V T   HT  V+S+AF  +   L S++ 
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGE------CVRTLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 399 DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIGADRIVCGG 456
           D  + + DV          +GK ++           L G     N ++       +    
Sbjct: 114 DKTIKVWDVE---------TGKCLTT----------LRGHTDWVNSVAFSPDGTFVASSS 154

Query: 457 EEGIVRIWNFS 467
           ++G +++W+  
Sbjct: 155 QDGTIKLWDLR 165

Length = 289

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 44.0 bits (105), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 64  ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYC 109
           ++DLP  ++ +I + LDP++L  ++ V      LASD   W+    
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRLCL 46

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 62  STITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYC 109
            ++ DLP  L+ EIL+ LDPK+L  +S VS     L      WK+   
Sbjct: 1   FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 67  LPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF 107
           LP  ++ EIL+ LDPK+L  +  VS     L   H  W + 
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 247 FRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD 279
             L  H GP+TS+A   D   + SGS D T+++WD
Sbjct: 6   KTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 252 HEGPITSLAL--DLTRIYSGSWDMTVRVWD 279
           H GP+TS+A   D   + SGS D TVRVWD
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 20  EDSLQSQIESELNNLNFEIEATKSTLESKQLPCNDVLSNLHRSTITDLPPALISEILNCL 79
           +D  +   + ELN L+ EIE  +  ++  +  C+ +   L +S  +DL    + E +  L
Sbjct: 63  QDQFELPSDEELNKLDMEIEELREEVQLLKQDCSTLEIEL-KSLTSDLTTEELQEEIQEL 121

Query: 80  DPKELGIVSCVSPILHRLASDHHAWKEF 107
             KE      V  I  +L S    WK  
Sbjct: 122 K-KE------VREIEEKLESLEEGWKPV 142

This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	536
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.98
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
PTZ00420	568	coronin; Provisional	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.91
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG1539	910	consensus WD repeat protein [General function pred	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG2048	691	consensus WD40 repeat protein [General function pr	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG1273	405	consensus WD40 repeat protein [General function pr	99.86
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG0649	325	consensus WD40 repeat protein [General function pr	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.79
KOG1273	405	consensus WD40 repeat protein [General function pr	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.77
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG1334	559	consensus WD40 repeat protein [General function pr	99.77
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
COG2319	466	FOG: WD40 repeat [General function prediction only	99.76
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.76
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.74
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.71
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.71
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.7
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.68
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.68
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.67
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.67
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.64
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.63
PRK11028	330	6-phosphogluconolactonase; Provisional	99.62
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.61
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.58
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.58
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.56
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.55
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.55
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.54
KOG4227	609	consensus WD40 repeat protein [General function pr	99.52
KOG2321	703	consensus WD40 repeat protein [General function pr	99.52
PRK11028	330	6-phosphogluconolactonase; Provisional	99.51
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.5
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.5
KOG1334	559	consensus WD40 repeat protein [General function pr	99.49
KOG2321	703	consensus WD40 repeat protein [General function pr	99.46
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.46
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.43
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.43
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.41
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.4
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.38
PRK03629	429	tolB translocation protein TolB; Provisional	99.37
KOG2139	445	consensus WD40 repeat protein [General function pr	99.35
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.35
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.35
PRK01742	429	tolB translocation protein TolB; Provisional	99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.34
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.3
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.29
PRK04922	433	tolB translocation protein TolB; Provisional	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.28
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.27
PRK02889	427	tolB translocation protein TolB; Provisional	99.26
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.25
KOG2139	445	consensus WD40 repeat protein [General function pr	99.24
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.24
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.22
PRK05137	435	tolB translocation protein TolB; Provisional	99.21
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.19
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.18
KOG2315	566	consensus Predicted translation initiation factor	99.17
PRK03629	429	tolB translocation protein TolB; Provisional	99.14
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.13
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.13
PRK05137	435	tolB translocation protein TolB; Provisional	99.12
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.11
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.1
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.09
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.09
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.08
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.07
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.06
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.04
PRK04922	433	tolB translocation protein TolB; Provisional	99.02
PRK04792	448	tolB translocation protein TolB; Provisional	98.99
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.98
KOG4547	541	consensus WD40 repeat-containing protein [General	98.97
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.96
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.96
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.96
KOG2314	698	consensus Translation initiation factor 3, subunit	98.96
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.94
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.9
PRK02889	427	tolB translocation protein TolB; Provisional	98.88
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.88
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.85
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.84
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.82
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.8
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.8
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.79
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.79
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.77
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.77
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.77
COG4946	668	Uncharacterized protein related to the periplasmic	98.74
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.72
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.72
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.71
PRK01029	428	tolB translocation protein TolB; Provisional	98.7
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.69
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.68
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.68
PRK00178	430	tolB translocation protein TolB; Provisional	98.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.66
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
KOG2695	425	consensus WD40 repeat protein [General function pr	98.64
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.63
COG4946	668	Uncharacterized protein related to the periplasmic	98.62
PRK04792	448	tolB translocation protein TolB; Provisional	98.61
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.61
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.58
KOG2315	566	consensus Predicted translation initiation factor	98.55
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.54
KOG2314	698	consensus Translation initiation factor 3, subunit	98.53
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.53
PRK04043	419	tolB translocation protein TolB; Provisional	98.51
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.49
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.48
KOG3621	726	consensus WD40 repeat-containing protein [General	98.46
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.42
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.41
PRK01029	428	tolB translocation protein TolB; Provisional	98.41
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.35
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.28
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.27
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.27
KOG2997	366	consensus F-box protein FBX9 [General function pre	98.27
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.26
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.23
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.17
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.16
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.1
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.06
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.05
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.01
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.01
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.01
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.99
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.98
PRK04043	419	tolB translocation protein TolB; Provisional	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.85
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.82
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.8
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.79
PHA02713	557	hypothetical protein; Provisional	97.77
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.77
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.75
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.73
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.72
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.61
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.6
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.59
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.52
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.48
PHA02713	557	hypothetical protein; Provisional	97.46
PRK02888	635	nitrous-oxide reductase; Validated	97.44
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.44
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.43
COG5276	370	Uncharacterized conserved protein [Function unknow	97.42
PRK02888	635	nitrous-oxide reductase; Validated	97.41
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.4
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.37
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.36
KOG3926	332	consensus F-box proteins [Amino acid transport and	97.35
KOG3621	726	consensus WD40 repeat-containing protein [General	97.33
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.28
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.27
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.17
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.15
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.02
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.88
KOG4341	483	consensus F-box protein containing LRR [General fu	96.83
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.75
PHA03098	534	kelch-like protein; Provisional	96.7
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.69
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.62
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.52
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.52
COG3391	381	Uncharacterized conserved protein [Function unknow	96.46
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.41
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.35
COG5276	370	Uncharacterized conserved protein [Function unknow	96.34
PHA02790	480	Kelch-like protein; Provisional	96.34
PHA03098	534	kelch-like protein; Provisional	96.33
KOG2444	238	consensus WD40 repeat protein [General function pr	96.31
KOG2395	644	consensus Protein involved in vacuole import and d	96.24
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.23
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.18
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.11
PHA02790	480	Kelch-like protein; Provisional	96.0
KOG2444	238	consensus WD40 repeat protein [General function pr	95.95
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.79
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.62
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.6
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.58
PRK13616	591	lipoprotein LpqB; Provisional	95.54
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	95.38
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.28
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.17
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.82
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.8
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	94.75
KOG2395	644	consensus Protein involved in vacuole import and d	94.65
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.45
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.39
PF06881	109	Elongin_A: RNA polymerase II transcription factor	94.05
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.5
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.23
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	93.09
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	92.92
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.66
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.64
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.61
PF13013	109	F-box-like_2: F-box-like domain	92.28
PRK13616	591	lipoprotein LpqB; Provisional	92.27
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.12
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.12
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	91.99
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	91.96
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	91.94
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.89
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.68
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.67
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.25
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.05
PRK10115	686	protease 2; Provisional	91.01
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.74
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.07
COG5167	776	VID27 Protein involved in vacuole import and degra	89.88
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.79
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.79
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.75
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	89.36
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.8
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	88.78
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.57
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	88.5
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.06
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.67
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	87.57
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.85
COG4590	733	ABC-type uncharacterized transport system, permeas	86.4
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.39
KOG3616	1636	consensus Selective LIM binding factor [Transcript	86.37
COG3391	381	Uncharacterized conserved protein [Function unknow	86.33
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	86.31
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	86.26
PLN02153	341	epithiospecifier protein	85.79
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.68
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	84.92
COG5167	776	VID27 Protein involved in vacuole import and degra	84.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	84.32
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	84.3
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	84.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	83.65
PLN02153	341	epithiospecifier protein	83.06
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	82.47
PLN02193	470	nitrile-specifier protein	82.18
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	82.13
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	81.52
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	81.5
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	81.25
KOG2714	465	consensus SETA binding protein SB1 and related pro	80.56
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	80.42

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.2e-58  Score=401.37  Aligned_cols=410  Identities=20%  Similarity=0.282  Sum_probs=349.4

Q ss_pred             ccccccchhhHhhhhccccCCCC--ccccccccccccccCCc----HHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCCh
Q 009373           29 SELNNLNFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLP----PALISEILNCLDPKELGIVSCVSPILHRLASDHH  102 (536)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~Lp----~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~  102 (536)
                      +-.+.+-..++.|+++.|..|.-  -+.+.|.+++||++.||    +++...||+|||+.+||.|..||+.|++++.+..
T Consensus        38 wsE~~qvdfv~~ll~~m~hyq~g~v~n~~rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~  117 (499)
T KOG0281|consen   38 WSESDQVDFVEHLISRMCHYQHGHINNYLKPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGM  117 (499)
T ss_pred             cccccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccch
Confidence            33444456778899999999987  88899999999999999    9999999999999999999999999999999999


Q ss_pred             hhHHHHHhH------h-CCCCCC---------CCCCCCCCC----CCCchhhhhhhh-hhccccCCccceeeeeC---cc
Q 009373          103 AWKEFYCER------W-GLPIAS---------APLGAGFSD----DKSWKELFVERE-FRSKTFLGRYSIDVLYG---HT  158 (536)
Q Consensus       103 lW~~~~~~~------~-~~~~~~---------~~~~~~~~~----~~~Wk~~~~~~~-~~~~~~~~~~~~~~l~~---h~  158 (536)
                      +||+++.+.      | ++...+         .+...+...    ...|-..+.+.. +..+|..|++.++.+..   ..
T Consensus       118 ~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~s  197 (499)
T KOG0281|consen  118 LWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENS  197 (499)
T ss_pred             HHHHHHHHhcchHHHHhhhhhccCcchhhccCCCCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccC
Confidence            999987652      1 111111         011111222    233544555433 57788899999888875   46


Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      ++|+|+.+  |...+++|..|++|+|||..+..++..+.+|++.|+|+..+.+.+++|+.|.+|++||+++++       
T Consensus       198 kgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge-------  268 (499)
T KOG0281|consen  198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE-------  268 (499)
T ss_pred             CceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-------
Confidence            78999998  477899999999999999999999999999999999999999999999999999999998875       


Q ss_pred             CcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEe---e-eccccEEEEeecCCEEEEec-CCcE
Q 009373          239 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV---L-RHSDWVYGLAPHDTTVASTS-GSDV  313 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~-~~~~~v~~~~~~~~~l~~~~-d~~i  313 (536)
                            ++.++.+|...|..+.|+.++++++|.|.++.+||+.+...+..   + .|...|+.+..+.+++++++ |.+|
T Consensus       269 ------~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTi  342 (499)
T KOG0281|consen  269 ------PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  342 (499)
T ss_pred             ------hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceE
Confidence                  66678899999999999999999999999999999987664332   2 28999999999999999998 8999


Q ss_pred             EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeE
Q 009373          314 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWL  393 (536)
Q Consensus       314 ~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l  393 (536)
                      ++|++.+++.++++. +|...|-|+.+  .|+++++|+.|.+|++||+..+      .+++.+.||..-|.++.|+...+
T Consensus       343 kvW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G------~cLRvLeGHEeLvRciRFd~krI  413 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRI  413 (499)
T ss_pred             EEEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEecccc------HHHHHHhchHHhhhheeecCcee
Confidence            999999999999996 79999999987  4899999999999999999999      89999999999999999999999


Q ss_pred             EEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          394 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       394 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ++|+.||+|+|||+.+...+..+..          .-+...+..|++.|+.+.|+...+++++.|.+|-|||+.++..-
T Consensus       414 VSGaYDGkikvWdl~aaldpra~~~----------~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  414 VSGAYDGKIKVWDLQAALDPRAPAS----------TLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             eeccccceEEEEecccccCCccccc----------chHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcc
Confidence            9999999999999998755533322          22345567789999999999999999999999999999987654

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.3e-48  Score=341.54  Aligned_cols=310  Identities=26%  Similarity=0.361  Sum_probs=273.8

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ...+.||.++|.|++|+|+|..|+||+.|.++|+||+.+..++.+..+|...|.|++  |||+.|++|+.||+|++||..
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            568899999999999999999999999999999999999999999999999998876  999999999999999999998


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEEe-------CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEee
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-------LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP  300 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~  300 (536)
                      ++.            .....+.+|...|++++|.       ..+|++++.||+|+|||+..++++..+. |..+|+|+..
T Consensus       188 tg~------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw  255 (480)
T KOG0271|consen  188 TGQ------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW  255 (480)
T ss_pred             CCC------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence            874            3556688999999999993       3689999999999999999999998887 9999999997


Q ss_pred             c-CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe-----------CCC-----------------------
Q 009373          301 H-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS-----------HTG-----------------------  344 (536)
Q Consensus       301 ~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~-----------~~~-----------------------  344 (536)
                      . ..++++++ |++|++|+...|...+.+. +|...|+.++.+           |.+                       
T Consensus       256 GG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~  334 (480)
T KOG0271|consen  256 GGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD  334 (480)
T ss_pred             cCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence            7 55778888 9999999999999999886 799999999876           323                       


Q ss_pred             --CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCC
Q 009373          345 --DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGK  420 (536)
Q Consensus       345 --~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~  420 (536)
                        ..|++|+.|.++.+|+.....     +++..+.+|...|+.+.|+|  .+++++|-|..|++||.+++          
T Consensus       335 ~~erlVSgsDd~tlflW~p~~~k-----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG----------  399 (480)
T KOG0271|consen  335 SGERLVSGSDDFTLFLWNPFKSK-----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG----------  399 (480)
T ss_pred             CcceeEEecCCceEEEecccccc-----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc----------
Confidence              359999999999999976653     57888999999999999998  69999999999999999985          


Q ss_pred             ceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccc
Q 009373          421 RVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS  498 (536)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (536)
                               .....+.||-..|..++++.+  +|++|+.|.++++|++.+.+....    +++      ....++.++|+
T Consensus       400 ---------k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D----LpG------h~DEVf~vDws  460 (480)
T KOG0271|consen  400 ---------KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD----LPG------HADEVFAVDWS  460 (480)
T ss_pred             ---------chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc----CCC------CCceEEEEEec
Confidence                     344567899999999998877  999999999999999998765543    233      23557899999


Q ss_pred             cCCCCccee
Q 009373          499 SKGGRTDQC  507 (536)
Q Consensus       499 ~~g~~~~~~  507 (536)
                      |||.++++.
T Consensus       461 pDG~rV~sg  469 (480)
T KOG0271|consen  461 PDGQRVASG  469 (480)
T ss_pred             CCCceeecC
Confidence            999999975

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2e-46  Score=368.14  Aligned_cols=412  Identities=25%  Similarity=0.348  Sum_probs=350.8

Q ss_pred             ccccccccccccchhhHhhhhccccCCCC--ccccccccccccccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcC
Q 009373           23 LQSQIESELNNLNFEIEATKSTLESKQLP--CNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASD  100 (536)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~  100 (536)
                      ...+.......++..+..++..|+.+++.  .+...+..++|||..||.|+..+||.|||+++|+.+++||+.|+.++++
T Consensus        65 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~  144 (537)
T KOG0274|consen   65 IAQFSSLSEKEKKLLLDRLLDSSGPSQLSELGNLLEPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDD  144 (537)
T ss_pred             eehhcccchhhhceeeeeeccccCchhhhhhhhhcccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhc
Confidence            34355555567778888899999999888  5566899999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHhHhCCCCCCC--CC-CCCCCCCCCchhhhhhhhhhccccCC--ccceeeeeC-ccccEEEEEEecCCCEEE
Q 009373          101 HHAWKEFYCERWGLPIASA--PL-GAGFSDDKSWKELFVEREFRSKTFLG--RYSIDVLYG-HTEAVLTVFVLASAKLLF  174 (536)
Q Consensus       101 ~~lW~~~~~~~~~~~~~~~--~~-~~~~~~~~~Wk~~~~~~~~~~~~~~~--~~~~~~l~~-h~~~V~~v~~~~~~~~l~  174 (536)
                      +..|.+.+....+......  .. .........||..|.++....++|..  ......+.+ |...|.+..|.  +.+++
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~  222 (537)
T KOG0274|consen  145 DKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFK  222 (537)
T ss_pred             cchhhhhhhhhcccCCcccCcccccccccccchhhhhhhhhhhccccccccccccceeecccCcchhhhheee--cCeEE
Confidence            9999986555443322111  11 11113457899998887654433322  222345554 67788888887  77899


Q ss_pred             EEeCCCcEEEEECCCCceeee-eCCCCceEEEEecC--CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373          175 TSGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  251 (536)
Q Consensus       175 sgs~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  251 (536)
                      +++.|++|++|+..++..+.. +.+|.+.|.++...  ++++++|+.|.++++||..++.             +...+.+
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-------------C~~~l~g  289 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-------------CTHSLQG  289 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-------------EEEEecC
Confidence            999999999999999999888 99999999999855  8999999999999999998764             8888999


Q ss_pred             CccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcc
Q 009373          252 HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       252 h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~  329 (536)
                      |.+.|.++...+..+++|+.|.+|++|++.++.++..+. |.++|.++..++.++++|+ |++|.+||+.+++++..+. 
T Consensus       290 h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~-  368 (537)
T KOG0274|consen  290 HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLS-  368 (537)
T ss_pred             CCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeec-
Confidence            999999999999999999999999999999999999999 9999999998899999999 8999999999999999996 


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCc
Q 009373          330 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       330 ~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~  409 (536)
                      +|...|+++.+.+. ..+++|+.|++|++||+++..     .++.++.+|.+.|.++.+..++|++++.|++|++||..+
T Consensus       369 gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  369 GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-----hhhhhhcCCcccccccccccceeEeccccccEEEeeccc
Confidence            69999999988765 899999999999999998873     588999999999999999999999999999999999988


Q ss_pred             ccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHH
Q 009373          410 LLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~  475 (536)
                      +                   .+.+.+.+ |...+.++......+++++.||.+++||++++......
T Consensus       443 ~-------------------~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  443 G-------------------ECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             C-------------------ceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence            4                   34445555 56778888877679999999999999999999988876

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.1e-47  Score=335.46  Aligned_cols=310  Identities=23%  Similarity=0.345  Sum_probs=270.1

Q ss_pred             HHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 009373          105 KEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRM  184 (536)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~i  184 (536)
                      ..+.|.+|++....+.+.+|+...+.|.....            .+..+.+||..-|.|++|+|||+.||+|+.||+|++
T Consensus       116 e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te------------Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l  183 (480)
T KOG0271|consen  116 EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE------------TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL  183 (480)
T ss_pred             CcEEEEEecCCCceEEecCCCceEEeeccCCC------------CcceeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence            35678889877777788888888888876443            367899999999999999999999999999999999


Q ss_pred             EECCCCcee-eeeCCCCceEEEEe-------cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCE
Q 009373          185 WHLEDGFSI-ASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI  256 (536)
Q Consensus       185 wd~~~~~~~-~~~~~~~~~v~~~~-------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  256 (536)
                      ||.++|+++ ..+.+|...|++++       |..++|++++.||+|+|||+..+             .++..+.+|+.+|
T Consensus       184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~-------------~~~~~lsgHT~~V  250 (480)
T KOG0271|consen  184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG-------------TCVRTLSGHTASV  250 (480)
T ss_pred             ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-------------eEEEEeccCccce
Confidence            999998765 56899999999887       45679999999999999998654             4788899999999


Q ss_pred             EEEEEe-CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeec-------------C-------------------
Q 009373          257 TSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH-------------D-------------------  302 (536)
Q Consensus       257 ~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~-------------~-------------------  302 (536)
                      +|+.|. .+++++||.|++|++|+...|.+...+. |..+|+.++.+             +                   
T Consensus       251 TCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~  330 (480)
T KOG0271|consen  251 TCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA  330 (480)
T ss_pred             EEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence            999995 6899999999999999999999999888 88888877622             2                   


Q ss_pred             ------CEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          303 ------TTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       303 ------~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                            +.+++|+ |.++.+|+....+ ++..+ .+|...|+.+.|+||++++|+++-|..|++||.+++      +.+.
T Consensus       331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG------k~la  403 (480)
T KOG0271|consen  331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG------KFLA  403 (480)
T ss_pred             hhccCcceeEEecCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCc------chhh
Confidence                  3489998 7999999987654 55555 479999999999999999999999999999999999      7899


Q ss_pred             eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--
Q 009373          375 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--  450 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--  450 (536)
                      ++.+|-++|+.++|+.  ++|++||.|.+++|||+++.                   .....+.||...|++++++++  
T Consensus       404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-------------------Kl~~DLpGh~DEVf~vDwspDG~  464 (480)
T KOG0271|consen  404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-------------------KLKQDLPGHADEVFAVDWSPDGQ  464 (480)
T ss_pred             hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee-------------------eecccCCCCCceEEEEEecCCCc
Confidence            9999999999999976  59999999999999999983                   333456789999999887665  


Q ss_pred             EEEEecCCCeEEEEe
Q 009373          451 RIVCGGEEGIVRIWN  465 (536)
Q Consensus       451 ~l~sg~~Dg~i~vW~  465 (536)
                      .+++|+.|..+++|.
T Consensus       465 rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  465 RVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecCCCceEEEeec
Confidence            999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-41  Score=289.42  Aligned_cols=282  Identities=20%  Similarity=0.288  Sum_probs=246.9

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      .++|+||.+.|+++.|++|+++++++|.||.+.|||.-+......++-....|+.+  +|.+++++.|+.|....||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            37999999999999999999999999999999999999988888887777777655  5999999999999999999987


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e-cCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDT  303 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~  303 (536)
                      +..       ..........+.+|++.+.|..| +...|+|+|.|.+..+||+++++.+..+. |.+.|.+++  | +++
T Consensus       128 ~~d-------~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  128 TRD-------AEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             ccc-------ccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence            541       11223456678999999999999 88999999999999999999999999998 999999988  6 889


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec--cCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IPHT  380 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~  380 (536)
                      .+++|+ |+..++||++.+..+++|. +|...|++++|.|+|.-+++|++|+++++||++...      .+..+  ..-.
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~------~~a~ys~~~~~  273 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ------ELAVYSHDSII  273 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCc------EEeeeccCccc
Confidence            999998 9999999999999999996 799999999999999999999999999999999983      33333  3346


Q ss_pred             CCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEec
Q 009373          381 GPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGG  456 (536)
Q Consensus       381 ~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~  456 (536)
                      .+|++++|+  +++|++|..|.++.|||.-..                   +....+.||...|.++..+++  -++||+
T Consensus       274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-------------------e~vg~L~GHeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-------------------ERVGVLAGHENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             CCceeEEEcccccEEEeeecCCceeEeecccc-------------------ceEEEeeccCCeeEEEEECCCCcEEEecc
Confidence            689999996  689999999999999998763                   333457799998888876555  999999


Q ss_pred             CCCeEEEEe
Q 009373          457 EEGIVRIWN  465 (536)
Q Consensus       457 ~Dg~i~vW~  465 (536)
                      .|.++|||.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-43  Score=314.03  Aligned_cols=274  Identities=22%  Similarity=0.340  Sum_probs=250.0

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cC--CCEEEEEeCCCcEEEEEcc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~vwd~~  228 (536)
                      .-.|-+.+|..+.|++++..|+|||.+|.++||+..+...+.++.+|...+.++.  |.  +..+++|+.||++++|++.
T Consensus       170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            3446788999999999999999999999999999999999999999999887765  54  5689999999999999986


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      +.             .++..+.+|...|..++|  +|++|+|++.|.+-++||++++..+...+ |...|.+++  ++|.
T Consensus       250 ~e-------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS  316 (459)
T KOG0272|consen  250 QE-------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS  316 (459)
T ss_pred             CC-------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence            53             367788999999999999  88999999999999999999988776665 999999988  9999


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      ++++|+ |..-+|||+++|+++..+. +|..+|.+++|+|+|..||||+.|++++|||++..      ..+.++.+|.+-
T Consensus       317 L~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------~~ly~ipAH~nl  389 (459)
T KOG0272|consen  317 LAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------SELYTIPAHSNL  389 (459)
T ss_pred             eeeccCccchhheeecccCcEEEEec-ccccceeeEeECCCceEEeecCCCCcEEEeeeccc------ccceecccccch
Confidence            999999 9999999999999999996 69999999999999999999999999999999998      678999999999


Q ss_pred             eEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecC
Q 009373          383 VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGE  457 (536)
Q Consensus       383 v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~  457 (536)
                      |+.+.|+|   .+|+|++.|+++++|..++.                   .+.+.+.||...|++++.+++  +++|++.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-------------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-------------------SPLKSLAGHEGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCc-------------------ccchhhcCCccceEEEEeccCCceEEEecc
Confidence            99999986   79999999999999998884                   455668999999999987665  8999999


Q ss_pred             CCeEEEEe
Q 009373          458 EGIVRIWN  465 (536)
Q Consensus       458 Dg~i~vW~  465 (536)
                      |.++++|.
T Consensus       451 DRT~KLW~  458 (459)
T KOG0272|consen  451 DRTIKLWR  458 (459)
T ss_pred             Cceeeecc
Confidence            99999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=274.49  Aligned_cols=277  Identities=20%  Similarity=0.354  Sum_probs=244.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      -+|+|+|+|.+||+|...+|.+..+++.....|.++.  |+++.|++++. ..|++||+.++.           ..++.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-----------p~Pv~t   78 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-----------PNPVAT   78 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-----------CCceeE
Confidence            4899999999999999999999999988888887765  88888888765 579999998864           347889


Q ss_pred             eeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcE
Q 009373          249 LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL  323 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~  323 (536)
                      +.+|+..|+++.|  +|..+++||+||+++|||++...+.+.+.+..+|+++.  |+...|+++. +|.|++||+....+
T Consensus        79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence            9999999999999  89999999999999999999999999999999999988  7777788887 89999999999877


Q ss_pred             EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCc
Q 009373          324 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK  401 (536)
Q Consensus       324 ~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~  401 (536)
                      ...+.......|.++...|+|.+++++...|.+++|++-.......+.++..++.|.+.+..+.++|  .+|+++|.|.+
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence            7776655667899999999999999999999999999988877778889999999999999999998  79999999999


Q ss_pred             EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHH
Q 009373          402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRAR  477 (536)
Q Consensus       402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~  477 (536)
                      ++||+.++.                  ......+.+|...++...|+.+  ||+||+.|+.+++|+++.++++.....
T Consensus       239 v~iwn~~~~------------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  239 VKIWNTDDF------------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG  298 (311)
T ss_pred             EEEEecCCc------------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence            999999874                  1223456888888988888766  999999999999999999987765433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.5e-37  Score=258.70  Aligned_cols=287  Identities=21%  Similarity=0.347  Sum_probs=234.8

Q ss_pred             ceeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECC-----CCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCc
Q 009373          150 SIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLE-----DGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGF  221 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~-----~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~  221 (536)
                      ...+++||++.|+.++..+. ...+++++.|.++.+|++.     .|..++.+.+|...|..+  +++|++.++++.|++
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~   86 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT   86 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence            34689999999999999987 5689999999999999875     467788999998888655  499999999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEE
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYG  297 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~  297 (536)
                      +++||+.+++             ....+.+|...|.+++|  |...+++|+.|++|++|++..........  +.++|.|
T Consensus        87 lrlWDl~~g~-------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc  153 (315)
T KOG0279|consen   87 LRLWDLATGE-------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC  153 (315)
T ss_pred             EEEEEecCCc-------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence            9999998763             67789999999999999  77899999999999999987554443333  3789999


Q ss_pred             Ee--ec--CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373          298 LA--PH--DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       298 ~~--~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                      +.  |+  ..++++++ |++|++||+++.+....+. +|.+.++.++++|||.++++|+.||.+.+||++.+      +.
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~------k~  226 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG------KN  226 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCC------ce
Confidence            88  55  56888888 9999999999999888885 79999999999999999999999999999999998      55


Q ss_pred             eeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--C
Q 009373          373 VATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--A  449 (536)
Q Consensus       373 ~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~  449 (536)
                      +..+ +|...|.+++|+| .+.+++..+..|+|||+.+............       .+   ........+++++++  |
T Consensus       227 lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~-------g~---s~~~~~~~clslaws~dG  295 (315)
T KOG0279|consen  227 LYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGI-------GP---SSKAGDPICLSLAWSADG  295 (315)
T ss_pred             eEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccc-------cc---ccccCCcEEEEEEEcCCC
Confidence            5554 6889999999999 4555666677799999998654433221110       00   122233445666666  6


Q ss_pred             CEEEEecCCCeEEEEeCC
Q 009373          450 DRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       450 ~~l~sg~~Dg~i~vW~~~  467 (536)
                      ..|.+|-.|+.|++|.+.
T Consensus       296 ~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEeeecCCcEEEEEee
Confidence            699999999999999875

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.3e-38  Score=273.73  Aligned_cols=278  Identities=23%  Similarity=0.342  Sum_probs=249.8

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+.+.||..+|+.+-|+|+-.++++++.|++|++||..+|+....+++|...+..++  ..|+++++++.|-.+++||.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            4678889999999999999999999999999999999999999999999999998877  56889999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                      .+.            ..+...+.+|...|.++.|  .++++++++.|.+|+.|++.++.++.++. |..+|..+.  .+|
T Consensus       180 ~~~------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG  247 (406)
T KOG0295|consen  180 DTF------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG  247 (406)
T ss_pred             HHH------------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence            653            3466677899999999999  78999999999999999999999999998 888998887  678


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC---------------CCEEEEEcCCCcEEEEEcccCcc
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---------------GDFLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~---------------~~~l~tg~~dg~i~iwd~~~~~~  366 (536)
                      .++++++ |.++++|-+.++++...+. .|..+|.+++|.|.               ++++++++.|++|++||+.++  
T Consensus       248 ti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--  324 (406)
T KOG0295|consen  248 TIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--  324 (406)
T ss_pred             eEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--
Confidence            8889888 8999999999998877775 59999999999873               358999999999999999999  


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS  444 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  444 (536)
                          .++.++.+|...|..++|+|  .||+++..|+++++||+++.                   .+...+..|+.-+.+
T Consensus       325 ----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-------------------~cmk~~~ah~hfvt~  381 (406)
T KOG0295|consen  325 ----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-------------------QCMKTLEAHEHFVTS  381 (406)
T ss_pred             ----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-------------------eeeeccCCCcceeEE
Confidence                89999999999999999995  89999999999999999984                   344455667777888


Q ss_pred             EEecCC--EEEEecCCCeEEEEe
Q 009373          445 VDIGAD--RIVCGGEEGIVRIWN  465 (536)
Q Consensus       445 ~~~~~~--~l~sg~~Dg~i~vW~  465 (536)
                      +++..+  +++||+-|.++++|.
T Consensus       382 lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  382 LDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EecCCCCceEEeccccceeeeee
Confidence            887766  999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.8e-39  Score=284.71  Aligned_cols=238  Identities=21%  Similarity=0.261  Sum_probs=221.1

Q ss_pred             cceeeeeCccccEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEE--EecCCCEEEEEeCCCcEEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~--~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~v  224 (536)
                      ..+++|+||++.|.++.|+|.  +..+|||+.||+|++|++++..++..+.+|...|..  |+|+|++|+|++.|.+-++
T Consensus       208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL  287 (459)
T ss_pred             ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence            468999999999999999997  568999999999999999999999999999887754  5599999999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--  299 (536)
                      ||++++.             ......||...|.+++|  +|..++||+.|..-+|||+++++++..+. |..+|.+++  
T Consensus       288 WD~~tk~-------------ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fs  354 (459)
T KOG0272|consen  288 WDLETKS-------------ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFS  354 (459)
T ss_pred             cccccch-------------hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeEC
Confidence            9998864             45556799999999999  88999999999999999999999999998 999999988  


Q ss_pred             ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      |+|..+++|+ |++++|||++..+.+.++. +|..-|+.++|+| .|.+|+|++.|++++||..++.      .++.++.
T Consensus       355 PNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~------~~~ksLa  427 (459)
T KOG0272|consen  355 PNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW------SPLKSLA  427 (459)
T ss_pred             CCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCc------ccchhhc
Confidence            9999999999 9999999999999998886 7999999999999 7889999999999999999888      7899999


Q ss_pred             CCCCCeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373          378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLID  406 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  406 (536)
                      ||.+.|.+++.++  .++++++.|.++++|.
T Consensus       428 GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  428 GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999999986  6899999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3e-37  Score=269.47  Aligned_cols=288  Identities=21%  Similarity=0.339  Sum_probs=243.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+++.||.+.|.|+++.|.+.+|+||+.|++++|||+.+|+...++.+|-..|..+.  +.-.++++++.|+.|++||+
T Consensus       143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            4678999999999999999999999999999999999999999999999998887665  66779999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                      +..             +.++.+.||-+.|.+++..  -+.|++|+.|.++++||+++...+..+. |..+|..+.  +.+
T Consensus       223 e~n-------------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d  289 (460)
T KOG0285|consen  223 EYN-------------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD  289 (460)
T ss_pred             hhh-------------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC
Confidence            764             4777889999999999995  5789999999999999999999999998 999999987  446


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      ..+++|+ |++|++||++.|+...++. .|...+.+++.+|....+++++.|. |+-|++..+      ..+..+.+|+.
T Consensus       290 pqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g------~f~~nlsgh~~  361 (460)
T KOG0285|consen  290 PQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEG------EFLQNLSGHNA  361 (460)
T ss_pred             CceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCcc------chhhccccccc
Confidence            6777777 9999999999999998885 6999999999999999999998885 999999988      67777999999


Q ss_pred             CeEEEEEc-CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCC
Q 009373          382 PVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEE  458 (536)
Q Consensus       382 ~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~D  458 (536)
                      .|++++.. .+++++|+.+|.+.+||.+++..-....         ....+.....  +..|++..|  ++..|+||..|
T Consensus       362 iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~---------t~vqpGSl~s--EagI~as~fDktg~rlit~ead  430 (460)
T KOG0285|consen  362 IINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ---------TIVQPGSLES--EAGIFASCFDKTGSRLITGEAD  430 (460)
T ss_pred             eeeeeeeccCceEEEcCCceEEEEEecCcCccccccc---------ccccCCcccc--ccceeEEeecccCceEEeccCC
Confidence            99999986 4899999999999999999863322111         1111111111  223444444  55699999999


Q ss_pred             CeEEEEeCCch
Q 009373          459 GIVRIWNFSQA  469 (536)
Q Consensus       459 g~i~vW~~~~~  469 (536)
                      .+|++|.-++.
T Consensus       431 KtIk~~keDe~  441 (460)
T KOG0285|consen  431 KTIKMYKEDEH  441 (460)
T ss_pred             cceEEEecccc
Confidence            99999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.7e-39  Score=281.12  Aligned_cols=250  Identities=22%  Similarity=0.330  Sum_probs=226.8

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      ...+..+.|.||++.|.|+.|.  .+.+++||.|.+|+|||+++|+++.++-.|...|+.+..+++++++++.|.++.+|
T Consensus       225 n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVW  302 (499)
T KOG0281|consen  225 NSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVW  302 (499)
T ss_pred             ccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEE
Confidence            4445788999999999999995  67999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT  304 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  304 (536)
                      |+....          .......+.||...|+.+.|+.++++++|.|.+|++|++.+++++.++. |...|.|+...+++
T Consensus       303 dm~sps----------~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rl  372 (499)
T KOG0281|consen  303 DMASPT----------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRL  372 (499)
T ss_pred             eccCch----------HHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeE
Confidence            986642          2345566889999999999999999999999999999999999999998 99999999999999


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc---cccceeeeccCCC
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE---ANVLLVATWIPHT  380 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~~~~~~h~  380 (536)
                      +++|+ |.+|++||+..|.+++.+. ||..-|.++.|.  .+.+++|+.||+|+|||+..+..+   ....++.++..|+
T Consensus       373 vVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs  449 (499)
T KOG0281|consen  373 VVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS  449 (499)
T ss_pred             EEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence            99999 9999999999999999986 799999999995  678999999999999999876433   2234677788999


Q ss_pred             CCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373          381 GPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       381 ~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +.|..+.|+...+++++.|.+|.|||+.++
T Consensus       450 gRVFrLQFD~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  450 GRVFRLQFDEFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             ceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence            999999999999999999999999999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=264.64  Aligned_cols=286  Identities=17%  Similarity=0.235  Sum_probs=254.0

Q ss_pred             hhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEe
Q 009373           88 SCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVL  167 (536)
Q Consensus        88 ~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~  167 (536)
                      .++.-+-+++++.|.  .++++..|+.+.....+.+.+.....|......            +++.+.-....|..++|+
T Consensus        41 ~~i~~~~rr~LkGH~--~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn------------K~haipl~s~WVMtCA~s  106 (343)
T KOG0286|consen   41 GRIQMRTRRTLKGHL--NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN------------KVHAIPLPSSWVMTCAYS  106 (343)
T ss_pred             eeeeeeeEEEecccc--cceeeeEecCCcCeEEeeccCCeEEEEEccccc------------ceeEEecCceeEEEEEEC
Confidence            344445668888888  789999999888888888888888889886665            467788888999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEECCCC------ceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCc
Q 009373          168 ASAKLLFTSGYDSIVRMWHLEDG------FSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS  240 (536)
Q Consensus       168 ~~~~~l~sgs~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  240 (536)
                      |+|+++|+|+.|+...||++.+.      ...+.+.+|.+.+.|+. .+...|+||+.|.++.+||++++.         
T Consensus       107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~---------  177 (343)
T KOG0286|consen  107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ---------  177 (343)
T ss_pred             CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce---------
Confidence            99999999999999999999865      45567899999998887 678899999999999999998874         


Q ss_pred             ccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcE
Q 009373          241 EKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDV  313 (536)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i  313 (536)
                          ....+.+|.+.|.++++   +++.+++|+.|++.++||++.+.+.++|. |...|+++.  |+|.-+++|+ |+++
T Consensus       178 ----~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tc  253 (343)
T KOG0286|consen  178 ----QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATC  253 (343)
T ss_pred             ----EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCcee
Confidence                67788999999999999   67899999999999999999999999998 999999998  9999999999 7999


Q ss_pred             EEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373          314 YIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--  390 (536)
Q Consensus       314 ~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--  390 (536)
                      ++||++..+.+..+.. ....+|++++|+..|++|++|..|.++.+||.-.+      ..+..+.+|.+.|.+|..+|  
T Consensus       254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~------e~vg~L~GHeNRvScl~~s~DG  327 (343)
T KOG0286|consen  254 RLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG------ERVGVLAGHENRVSCLGVSPDG  327 (343)
T ss_pred             EEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc------ceEEEeeccCCeeEEEEECCCC
Confidence            9999999999988852 23458999999999999999999999999998887      67888999999999999987  


Q ss_pred             CeEEEEeCCCcEEEEE
Q 009373          391 PWLVSAAGDGKLSLID  406 (536)
Q Consensus       391 ~~l~s~s~dg~i~vwd  406 (536)
                      .-+++||+|..++||.
T Consensus       328 ~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  328 MAVATGSWDSTLRIWA  343 (343)
T ss_pred             cEEEecchhHheeecC
Confidence            5899999999999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.9e-37  Score=276.91  Aligned_cols=310  Identities=21%  Similarity=0.286  Sum_probs=257.1

Q ss_pred             eeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCC--ceee--ee----------CCCCceEEE--EecCCCEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG--FSIA--SS----------KPLGCTIRA--VAADKKLLV  214 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~--~~~~--~~----------~~~~~~v~~--~~~~~~~l~  214 (536)
                      +.+. |..+|.+++|+|... ++++|+.|-+.++|++...  ....  .+          ......|++  +..+|..|+
T Consensus       173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La  251 (524)
T KOG0273|consen  173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA  251 (524)
T ss_pred             eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence            4455 999999999999766 9999999999999999741  1111  00          111233444  457799999


Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-c
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-H  291 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~  291 (536)
                      +|+.||.+++|+....              ...++..|.++|.++.|  .|++|++++.||++.+||..++...+.+. |
T Consensus       252 tG~~~G~~riw~~~G~--------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~  317 (524)
T KOG0273|consen  252 TGSEDGEARIWNKDGN--------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH  317 (524)
T ss_pred             EeecCcEEEEEecCch--------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence            9999999999997543              56678889999999999  77899999999999999999999999988 6


Q ss_pred             cccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373          292 SDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       292 ~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                      ..+-..+. .+...+++++ |+.|+|+.+....++.++. +|.++|.++.|+|.|.+|++++.|++++||+....     
T Consensus       318 s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-----  391 (524)
T KOG0273|consen  318 SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-----  391 (524)
T ss_pred             cCCccceEEecCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEEECCCCceEEEecCCCeeEeeecCCC-----
Confidence            66656676 4555566666 9999999999999999997 59999999999999999999999999999998877     


Q ss_pred             cceeeeccCCCCCeEEEEEcC-----------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373          370 VLLVATWIPHTGPVNSLAFEF-----------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  438 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~-----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (536)
                       .....+.+|...|..+.|+|           ..+++++.|++|++||+..+                   .+...+..|
T Consensus       392 -~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------------v~i~~f~kH  451 (524)
T KOG0273|consen  392 -NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------------VPIHTLMKH  451 (524)
T ss_pred             -cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------------ceeEeeccC
Confidence             67888999999999999976           48999999999999999985                   344456789


Q ss_pred             cccEEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373          439 ECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       439 ~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  513 (536)
                      ..+|.++++++  .|+|+|+.||.|.+|+.++++.++....           ...++.+.|+.+|..+..|..+...
T Consensus       452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-----------~~~Ifel~Wn~~G~kl~~~~sd~~v  517 (524)
T KOG0273|consen  452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-----------TGGIFELCWNAAGDKLGACASDGSV  517 (524)
T ss_pred             CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-----------CCeEEEEEEcCCCCEEEEEecCCCc
Confidence            99999999885  5999999999999999999987765432           2236899999999999987665443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=2.1e-35  Score=252.44  Aligned_cols=281  Identities=17%  Similarity=0.231  Sum_probs=241.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-DGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ++-.+.||.+.|+.+.|+|+|.+||||+.|..|.+|++. .-+....+.+|.+.|+.+.  .+++.+++++.|.+|+.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            456788999999999999999999999999999999964 4466777889999999887  8999999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ec
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PH  301 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~  301 (536)
                      +++|+             ....+.+|.+-|.++..   ...++.+++.||++++||+++..+++++.....++++.  ..
T Consensus       119 ~~tG~-------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~  185 (338)
T KOG0265|consen  119 AETGK-------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT  185 (338)
T ss_pred             cccce-------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc
Confidence            98874             67788899999999987   55788999999999999999999999998788888887  55


Q ss_pred             CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373          302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      +..+.+|+ |+.|++||++.+.....+. ||...|+.+..+|+|.++.+-+.|.++++||++...+.  .+++..+.+|.
T Consensus       186 s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--~R~v~if~g~~  262 (338)
T KOG0265|consen  186 SDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--QRCVKIFQGHI  262 (338)
T ss_pred             ccceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCC--CceEEEeecch
Confidence            66777777 9999999999999999885 79999999999999999999999999999999876322  24566666653


Q ss_pred             C----CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EE
Q 009373          381 G----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI  452 (536)
Q Consensus       381 ~----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l  452 (536)
                      .    .....+|+|  ..+.+|+.|..+++||...                   ......+.||...|.+++|.+.  .|
T Consensus       263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~-------------------r~~lyklpGh~gsvn~~~Fhp~e~ii  323 (338)
T KOG0265|consen  263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS-------------------RRILYKLPGHYGSVNEVDFHPTEPII  323 (338)
T ss_pred             hhhhhhcceeeccCCCCccccccccceEEEeeccc-------------------ccEEEEcCCcceeEEEeeecCCCcEE
Confidence            2    334566776  6899999999999999876                   3445567899999999998886  99


Q ss_pred             EEecCCCeEEEEe
Q 009373          453 VCGGEEGIVRIWN  465 (536)
Q Consensus       453 ~sg~~Dg~i~vW~  465 (536)
                      .+++.|.+|++=+
T Consensus       324 ls~~sdk~i~lge  336 (338)
T KOG0265|consen  324 LSCSSDKTIYLGE  336 (338)
T ss_pred             EEeccCceeEeec
Confidence            9999999998743

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.6e-36  Score=267.09  Aligned_cols=274  Identities=21%  Similarity=0.306  Sum_probs=235.2

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      ..-..+|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++.  .++..+++|+.+|.|++|+..-.  
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--  170 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--  170 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh--
Confidence            34456899999999999999999999999999854444444588999888775  89999999999999999986433  


Q ss_pred             ceecccCcccccceEEeeCC-ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEE
Q 009373          233 HLFDISGSEKQNTQFRLWEH-EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA  306 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~  306 (536)
                                  .+..+.+| ...|++++|  +...|+++|.||+|+|||....+....+. |.-.|.+++  |...+++
T Consensus       171 ------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  171 ------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             ------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence                        23334444 589999999  66789999999999999999888877777 888999998  6777899


Q ss_pred             Eec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373          307 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  385 (536)
Q Consensus       307 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  385 (536)
                      +++ |+.|++||.+++.++.++. +|...|..+.|+|++++|+++|.|..+++||+++.      +.+.++++|...|++
T Consensus       239 sgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------kEl~~~r~Hkkdv~~  311 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------KELFTYRGHKKDVTS  311 (464)
T ss_pred             EccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------HHHHHhhcchhhhee
Confidence            988 8999999999999999996 69999999999999999999999999999999977      678889999999999


Q ss_pred             EEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCe
Q 009373          386 LAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGI  460 (536)
Q Consensus       386 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~  460 (536)
                      +.|+|   ++|.+|+.||.|..|.+...                  .+...+-.+|...|+++++.+  ..|++|+.|.+
T Consensus       312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~------------------~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t  373 (464)
T KOG0284|consen  312 LTWHPLNESLFTSGGSDGSVVHWVVGLE------------------EPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT  373 (464)
T ss_pred             eccccccccceeeccCCCceEEEecccc------------------ccccCCCcccccceeeeeccccceeEeecCCCcc
Confidence            99987   79999999999999998732                  223334467888898888765  59999999999


Q ss_pred             EEEEeCC
Q 009373          461 VRIWNFS  467 (536)
Q Consensus       461 i~vW~~~  467 (536)
                      +++|.-.
T Consensus       374 ~rfw~r~  380 (464)
T KOG0284|consen  374 VRFWTRN  380 (464)
T ss_pred             eeeeccC
Confidence            9999754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-35  Score=281.45  Aligned_cols=337  Identities=19%  Similarity=0.265  Sum_probs=260.4

Q ss_pred             hccccCCccceeeeeC-ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--C--CCEEEE
Q 009373          141 RSKTFLGRYSIDVLYG-HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--D--KKLLVA  215 (536)
Q Consensus       141 ~~~~~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~s  215 (536)
                      +.+.+.....++.++. |++||.-++|+|.+.+|++|+.|+.|+|||+..+.+...+.+|++.|.++.+  +  ...|++
T Consensus        87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~s  166 (775)
T KOG0319|consen   87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLAS  166 (775)
T ss_pred             EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheee
Confidence            3333333345778888 9999999999999999999999999999999999999999999988877653  2  235777


Q ss_pred             EeCCCcEEEEEcccCccc--------------------------------------------------------------
Q 009373          216 GGTDGFIHCWRAVEVLPH--------------------------------------------------------------  233 (536)
Q Consensus       216 g~~dg~i~vwd~~~~~~~--------------------------------------------------------------  233 (536)
                      |+.|+++++||+.+....                                                              
T Consensus       167 g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~  246 (775)
T KOG0319|consen  167 GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREEL  246 (775)
T ss_pred             cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhc
Confidence            788888888877633210                                                              


Q ss_pred             ------------------------------------------------------------eeccc---------------
Q 009373          234 ------------------------------------------------------------LFDIS---------------  238 (536)
Q Consensus       234 ------------------------------------------------------------~~~~~---------------  238 (536)
                                                                                  +++..               
T Consensus       247 ~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI  326 (775)
T KOG0319|consen  247 GGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEI  326 (775)
T ss_pred             CCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhh
Confidence                                                                        00000               


Q ss_pred             ------C-----------c-------ccccceEEeeCCccCEEEEE-E-eCCEEEEEecCCeEEEEeCCCceE----eEe
Q 009373          239 ------G-----------S-------EKQNTQFRLWEHEGPITSLA-L-DLTRIYSGSWDMTVRVWDRALLKC----LKV  288 (536)
Q Consensus       239 ------~-----------~-------~~~~~~~~~~~h~~~v~~l~-~-~~~~l~s~s~dg~i~iwd~~~~~~----~~~  288 (536)
                            +           +       ........+.||+..|.++. + +|..|+|||.|.++++|.++.+..    +..
T Consensus       327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~  406 (775)
T KOG0319|consen  327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ  406 (775)
T ss_pred             eeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence                  0           0       00001123448999999998 4 667999999999999998844332    222


Q ss_pred             ee-ccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcEE---EE-----EccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373          289 LR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLL---TV-----VNGAHVGNTKSLARSHTGDFLFTGGEDGA  355 (536)
Q Consensus       289 ~~-~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~~---~~-----~~~~~~~~i~~l~~~~~~~~l~tg~~dg~  355 (536)
                      .. |...|.+++   -...+|++++ |.++++|++...+..   ..     ....|...|++++++|+.++++|||.|.+
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence            23 888888887   3456888888 999999999872211   11     12369999999999999999999999999


Q ss_pred             EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee
Q 009373          356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  433 (536)
Q Consensus       356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (536)
                      .+||++...      ....++.||...|.++.|++  ..++|+|.|++|+||.+.+                   ..+..
T Consensus       487 aKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~-------------------fSClk  541 (775)
T KOG0319|consen  487 AKIWDLEQL------RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST-------------------FSCLK  541 (775)
T ss_pred             eeeecccCc------eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc-------------------ceeee
Confidence            999999966      78999999999999999998  4999999999999999998                   45667


Q ss_pred             eeccccccEEEEEec--CCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373          434 MLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       434 ~~~~~~~~v~~~~~~--~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      ++.||+..|+...|-  +..|+|++.||.|++|++.+++.+.++-.          .+.++=++..+|.+.+++++.-++
T Consensus       542 T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----------H~DrvWaL~~~~~~~~~~tgg~Dg  611 (775)
T KOG0319|consen  542 TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----------HNDRVWALSVSPLLDMFVTGGGDG  611 (775)
T ss_pred             eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----------ccceeEEEeecCccceeEecCCCe
Confidence            889999999988874  45999999999999999999988876644          334556777788888777654443


Q ss_pred             c
Q 009373          512 K  512 (536)
Q Consensus       512 ~  512 (536)
                      .
T Consensus       612 ~  612 (775)
T KOG0319|consen  612 R  612 (775)
T ss_pred             E
Confidence            3

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-34  Score=237.98  Aligned_cols=276  Identities=18%  Similarity=0.256  Sum_probs=233.2

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+.+.+|.++|..+.|+-+|+|.+|++.|.+|++|+...|.+++++.+|+..|+...  .|+..+++|+.|..|.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            3578899999999999999999999999999999999999999999999999998776  78899999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC--ceEeEeee-ccccEEEEeecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL--LKCLKVLR-HSDWVYGLAPHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~--~~~~~~~~-~~~~v~~~~~~~  302 (536)
                      .+|+             ....+.+|.+.|+.+.|  +...+++|+.|.++++||-++  .++++.+. ..+.|.++.-.+
T Consensus        89 ~TGk-------------v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~  155 (307)
T KOG0316|consen   89 NTGK-------------VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE  155 (307)
T ss_pred             ccCe-------------eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc
Confidence            9874             67889999999999999  457899999999999999875  46677776 788999999999


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      ..+++|+ ||+++.||++.|.....+   ...+|++++|+++++..++++.|+++++.|-.++      +.+..+++|..
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG------klL~sYkGhkn  226 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG------KLLKSYKGHKN  226 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchh------HHHHHhccccc
Confidence            9999999 999999999999887665   4568999999999999999999999999999999      78888999987


Q ss_pred             CeEEEEE----cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecCC--EEEE
Q 009373          382 PVNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGAD--RIVC  454 (536)
Q Consensus       382 ~v~~l~~----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~s  454 (536)
                      .-..+..    +..++++||.||.|++||+........                   +..+. ..+.++++.+.  .+++
T Consensus       227 ~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk-------------------~~~~~~v~v~dl~~hp~~~~f~~  287 (307)
T KOG0316|consen  227 MEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK-------------------LSVVSTVIVTDLSCHPTMDDFIT  287 (307)
T ss_pred             ceeeeeeeecccceeEEeccCCceEEEEEeccceeeee-------------------eccCCceeEEeeecccCccceeE
Confidence            6655544    247999999999999999987433222                   22222 34677777775  4555


Q ss_pred             ecCCCeEEEEeCC
Q 009373          455 GGEEGIVRIWNFS  467 (536)
Q Consensus       455 g~~Dg~i~vW~~~  467 (536)
                      +. ++.+..|.-.
T Consensus       288 A~-~~~~~~~~~~  299 (307)
T KOG0316|consen  288 AT-GHGDLFWYQE  299 (307)
T ss_pred             ec-CCceeceeeh
Confidence            54 3446666543

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9e-34  Score=270.10  Aligned_cols=304  Identities=19%  Similarity=0.340  Sum_probs=244.5

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCC-CcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD-SIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d-g~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ++.+.--..+|..++|+..|+.||.|+.. |.+-||+..+...+...++|...+.++.  |||.++++|+.||.|+|||.
T Consensus       300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~  379 (893)
T KOG0291|consen  300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT  379 (893)
T ss_pred             EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEec
Confidence            34444455788999999999999988764 8999999999999999999988877765  99999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccE--EEEe--ec
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV--YGLA--PH  301 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~--~~  301 (536)
                      ..+.             +..++..|++.|+.+.|  .++.+++.+-||+|+.||+...+..+++..+.++  .|++  |.
T Consensus       380 ~Sgf-------------C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s  446 (893)
T KOG0291|consen  380 QSGF-------------CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS  446 (893)
T ss_pred             cCce-------------EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence            7653             88899999999999999  8899999999999999999999999999854443  4555  77


Q ss_pred             CCEEEEec-C-CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          302 DTTVASTS-G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       302 ~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      |.++++|+ | -.|.+|++++|+.+..+. ||.++|.+++|+|.+..|++|+.|.+|++||+-...     ..+.+ ..+
T Consensus       447 GelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~-----~~vEt-l~i  519 (893)
T KOG0291|consen  447 GELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS-----GTVET-LEI  519 (893)
T ss_pred             CCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccCeEEeccccceEEEEEeeccC-----ceeee-Eee
Confidence            99999988 5 569999999999999885 799999999999999999999999999999987662     12222 246


Q ss_pred             CCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE---eeCCCeeeeccccccEEEEEecCCEEEE
Q 009373          380 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI---EVEPPQRMLHGFECNLLSVDIGADRIVC  454 (536)
Q Consensus       380 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~l~s  454 (536)
                      ...+..++|.|  ..|+++..||.|.+||.+...+.......+....-.   ..........+......+.+++|..+++
T Consensus       520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA  599 (893)
T KOG0291|consen  520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILA  599 (893)
T ss_pred             ccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEe
Confidence            77889999986  799999999999999998776654332221110000   0000111122334456677888889999


Q ss_pred             ecCCCeEEEEeCCchhhHHH
Q 009373          455 GGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       455 g~~Dg~i~vW~~~~~~~~~~  474 (536)
                      ||....|++|++.++..+++
T Consensus       600 gG~sn~iCiY~v~~~vllkk  619 (893)
T KOG0291|consen  600 GGESNSICIYDVPEGVLLKK  619 (893)
T ss_pred             cCCcccEEEEECchhheeee
Confidence            99999999999998776653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.9e-34  Score=240.44  Aligned_cols=281  Identities=20%  Similarity=0.219  Sum_probs=233.0

Q ss_pred             eeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEE
Q 009373          192 SIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI  266 (536)
Q Consensus       192 ~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l  266 (536)
                      ...++.+|.+.|..+.   .+.+.+++++.|.++.+|++....        .....+...+.||+..|..+..  ++++.
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd--------~~~G~~~r~~~GHsH~v~dv~~s~dg~~a   78 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD--------IKYGVPVRRLTGHSHFVSDVVLSSDGNFA   78 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc--------cccCceeeeeeccceEecceEEccCCceE
Confidence            4567889999999887   346799999999999999986642        1224567889999999999988  89999


Q ss_pred             EEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373          267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  342 (536)
Q Consensus       267 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~  342 (536)
                      ++++.|+++++||+.+++..+.|. |...|.+++  ++++.+++|+ |.+|.+||+............+.+.|+|+.|+|
T Consensus        79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen   79 LSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             EeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcC
Confidence            999999999999999998888887 999999988  8899999999 999999999876665555444588999999999


Q ss_pred             C--CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373          343 T--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS  418 (536)
Q Consensus       343 ~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~  418 (536)
                      +  ..+|++++.|++|++||+++.      +....+.+|++.++.++++|  ..+++|+.||.+.+||++..+...    
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly----  228 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY----  228 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE----
Confidence            8  679999999999999999998      67788899999999999987  689999999999999999854332    


Q ss_pred             CCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcccc
Q 009373          419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEM  497 (536)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (536)
                                      ..+|...|.++.|+++ +.+++..+..|+|||++++..+..+.....+. ......-+..+++|
T Consensus       229 ----------------sl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaw  291 (315)
T KOG0279|consen  229 ----------------SLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAW  291 (315)
T ss_pred             ----------------eccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEE
Confidence                            2346678899999998 66666667779999999999998876554443 11222334567899


Q ss_pred             ccCCCCccee
Q 009373          498 SSKGGRTDQC  507 (536)
Q Consensus       498 ~~~g~~~~~~  507 (536)
                      ++||..+-+.
T Consensus       292 s~dG~tLf~g  301 (315)
T KOG0279|consen  292 SADGQTLFAG  301 (315)
T ss_pred             cCCCcEEEee
Confidence            9999988754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=4.4e-33  Score=234.89  Aligned_cols=284  Identities=21%  Similarity=0.332  Sum_probs=229.4

Q ss_pred             ceeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCC---ceeeee-CCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009373          150 SIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDG---FSIASS-KPLGCTIRAVA--ADKKLLVAGGTDGFI  222 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~---~~~~~~-~~~~~~v~~~~--~~~~~l~sg~~dg~i  222 (536)
                      .++.+.||++.|..++|+|- |..||||+.|+.|++|+...+   .+...+ .+|...|..++  |.|++|++|+.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            47899999999999999998 889999999999999999853   233333 46777776665  899999999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc---eEeEeee-ccccEE
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL---KCLKVLR-HSDWVY  296 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~-~~~~v~  296 (536)
                      .||.-..+.           ..++..+.||...|.+++|  +|++|++++.|+.|-||.+..+   ++...++ |...|.
T Consensus        86 ~Iw~k~~~e-----------fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK  154 (312)
T KOG0645|consen   86 VIWKKEDGE-----------FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVK  154 (312)
T ss_pred             EEeecCCCc-----------eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccccc
Confidence            999865432           5678889999999999999  8899999999999999998743   5666666 888888


Q ss_pred             EEe--ecCCEEEEec-CCcEEEEeCCC---CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          297 GLA--PHDTTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       297 ~~~--~~~~~l~~~~-d~~i~i~d~~~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                      .+.  |...+|++++ |++|++|+-..   -.+..++. +|...|.+++|+|.|..|++++.|++++||-....      
T Consensus       155 ~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~------  227 (312)
T KOG0645|consen  155 HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD------  227 (312)
T ss_pred             EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeeccC------
Confidence            887  5568999999 99999998762   35677775 79999999999999999999999999999986644      


Q ss_pred             ceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC-
Q 009373          371 LLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA-  449 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  449 (536)
                      ..    .-|..+++.++|....|++++.|+.|+++.-.......            .+.-....-..|...|.++.+++ 
T Consensus       228 ~~----~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p------------~~~l~~~~~~aHe~dVNsV~w~p~  291 (312)
T KOG0645|consen  228 LS----GMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEP------------SWNLLAKKEGAHEVDVNSVQWNPK  291 (312)
T ss_pred             cc----hhcccceEeeeecccceEeccCCCEEEEEEecCCCCCc------------hHHHHHhhhcccccccceEEEcCC
Confidence            11    24778999999998899999999999999765310000            00111112345777777877776 


Q ss_pred             --CEEEEecCCCeEEEEeCC
Q 009373          450 --DRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       450 --~~l~sg~~Dg~i~vW~~~  467 (536)
                        ++|++||.||.|++|.+.
T Consensus       292 ~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  292 VSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCceeecCCCceEEEEEec
Confidence              399999999999999875

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.1e-34  Score=251.95  Aligned_cols=277  Identities=26%  Similarity=0.369  Sum_probs=234.0

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcccC
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      -|.+-|.++...  ++.++||++||++++||.. |+....+.+|.+++.++.     +....+++++.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            588999998886  7899999999999999964 889999999999988665     33447999999999999998776


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC-------------------------c
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-------------------------L  283 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~-------------------------~  283 (536)
                      ..         .........||...|.++..  ++.++++||.|.+|+||+..+                         +
T Consensus       180 ~~---------~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  180 EN---------KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             hh---------hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence            42         12233344599999999998  889999999999999999321                         1


Q ss_pred             eEeEeee-ccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          284 KCLKVLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       284 ~~~~~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      .++.++. |..+|.++. ++...+++++ |.+|+.||+.++..+.++.  ....++++.++|..++|++|+.|..+++||
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~D  328 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWD  328 (423)
T ss_pred             CceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecC
Confidence            2333444 888999988 6677788888 9999999999999998885  567899999999999999999999999999


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  437 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (536)
                      .+++.   .-....++.+|.+.|.++.|+|   ..|++|+.|+++++||+++.                  ..+...+.+
T Consensus       329 PR~~~---gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~------------------k~plydI~~  387 (423)
T KOG0313|consen  329 PRTGD---GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST------------------KAPLYDIAG  387 (423)
T ss_pred             CCCCC---CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC------------------CCcceeecc
Confidence            99883   2256778999999999999987   68999999999999999985                  335567899


Q ss_pred             ccccEEEEEecCC-EEEEecCCCeEEEEeCC
Q 009373          438 FECNLLSVDIGAD-RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       438 ~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~  467 (536)
                      |...|+++++... +++|||.|.+|+++.-.
T Consensus       388 h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  388 HNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            9999999999877 99999999999998754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5e-34  Score=266.31  Aligned_cols=346  Identities=20%  Similarity=0.254  Sum_probs=262.2

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      +++..|++.|.++.|+|....++++-++|.|.|||.++...++.+.-...+|.+..  ...+.+++|+.|..|+||+..+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            35566999999999999999999999999999999999999999988888887654  7788999999999999999987


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCc-eEeEeee-ccccEEEEe---ecC
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA---PHD  302 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~---~~~  302 (536)
                      +.             .+..+..|.+.|.+++.++  .+++|+|+|.+|++||.+.. .+.++++ |...|++++   .+.
T Consensus        87 ~e-------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~  153 (794)
T KOG0276|consen   87 GE-------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP  153 (794)
T ss_pred             ce-------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence            64             7888999999999999955  68999999999999998754 6677777 999999998   467


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC--CEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      +.+++++ |++|++|.+.+..+..++. +|...|+|+.+-+.|  .+|++|+.|.+|+|||..+.      .+++++.||
T Consensus       154 ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk------~CV~TLeGH  226 (794)
T KOG0276|consen  154 NTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK------SCVQTLEGH  226 (794)
T ss_pred             cceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchH------HHHHHhhcc
Confidence            7899999 9999999999999999996 899999999998855  59999999999999999998      899999999


Q ss_pred             CCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCC-ceeeEE----------eeCC-CeeeeccccccEEEE
Q 009373          380 TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGK-RVSRVI----------EVEP-PQRMLHGFECNLLSV  445 (536)
Q Consensus       380 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~----------~~~~-~~~~~~~~~~~v~~~  445 (536)
                      ...|..+.|+|  ..+++||.||++++|+-.+........-+- ++-.+.          ...+ ....--|...+..++
T Consensus       227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsM  306 (794)
T KOG0276|consen  227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSM  306 (794)
T ss_pred             cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceee
Confidence            99999999998  799999999999999988765443332211 111111          1111 111222344555556


Q ss_pred             EecCCEEEEecCC-CeEEEE------eCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcCC
Q 009373          446 DIGADRIVCGGEE-GIVRIW------NFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNG  518 (536)
Q Consensus       446 ~~~~~~l~sg~~D-g~i~vW------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  518 (536)
                      +.+|..+-+.... -.+.+-      ++..|+.+.-..+.+.      ...-.++.++.+|+|+.+++|          |
T Consensus       307 d~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLg------s~eiyPq~L~hsPNGrfV~Vc----------g  370 (794)
T KOG0276|consen  307 DSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELG------SVEIYPQTLAHSPNGRFVVVC----------G  370 (794)
T ss_pred             cCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhcc------ccccchHHhccCCCCcEEEEe----------c
Confidence            6555544333211 111121      1222222211111111      123346788999999999976          4


Q ss_pred             CcceeeccccCCCCc
Q 009373          519 NRRSVWHNKRGMSGK  533 (536)
Q Consensus       519 ~~~~~~~~~~~~~~~  533 (536)
                      +..+|-|+.-+.+.|
T Consensus       371 dGEyiIyTala~RnK  385 (794)
T KOG0276|consen  371 DGEYIIYTALALRNK  385 (794)
T ss_pred             CccEEEEEeeehhhc
Confidence            555666666555554

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4.6e-33  Score=255.04  Aligned_cols=293  Identities=18%  Similarity=0.269  Sum_probs=232.5

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC---CCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      .+++.|+.-|.|+.|+|||.+++|++.||.|.+||-.+|+.+..+.   +|.+.|++++  ||+..+++++.|.+++|||
T Consensus       184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            4566799999999999999999999999999999999999999887   8999998887  9999999999999999999


Q ss_pred             cccCccce------------------------------ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCe
Q 009373          227 AVEVLPHL------------------------------FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT  274 (536)
Q Consensus       227 ~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~  274 (536)
                      +.+.....                              .++-..........+.||...|+++..  ++.+|++|+.||.
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            98764210                              001111223356678899999999999  7799999999999


Q ss_pred             EEEEeCCCceEeEeee--cc------------------------------------------------------------
Q 009373          275 VRVWDRALLKCLKVLR--HS------------------------------------------------------------  292 (536)
Q Consensus       275 i~iwd~~~~~~~~~~~--~~------------------------------------------------------------  292 (536)
                      |.-||..++..-....  |.                                                            
T Consensus       344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~  423 (603)
T KOG0318|consen  344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA  423 (603)
T ss_pred             EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence            9999976542111000  00                                                            


Q ss_pred             ----------------------ccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEE-EccccccceEEEEEeCCCCEEE
Q 009373          293 ----------------------DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       293 ----------------------~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                                            ....++.|++..++.|+ |+.|++|.+..+..... ....|.++|++++++||+.+||
T Consensus       424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla  503 (603)
T KOG0318|consen  424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA  503 (603)
T ss_pred             ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE
Confidence                                  01112236778888888 89999999987654322 2235999999999999999999


Q ss_pred             EEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE
Q 009373          349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                      +|...+.+.+||+.+..     .....+.-|++.|++++|+|  .++++||.|-.|.||+++.+..              
T Consensus       504 ~~Da~rkvv~yd~~s~~-----~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~--------------  564 (603)
T KOG0318|consen  504 AGDASRKVVLYDVASRE-----VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK--------------  564 (603)
T ss_pred             EeccCCcEEEEEcccCc-----eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh--------------
Confidence            99999999999998884     23445556999999999998  6999999999999999987522              


Q ss_pred             eeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCC
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~  467 (536)
                          ...+...|...|..+.|-.+ .+++.|.|..|++|++.
T Consensus       565 ----~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  565 ----HIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ----heEeccccccCceeEEEecCceEEeccCcceeEEeccc
Confidence                23344567777888887555 99999999999999975

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=9.2e-34  Score=256.31  Aligned_cols=269  Identities=20%  Similarity=0.277  Sum_probs=232.6

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      +..|++++|+.+|.+||+|+.||.++||+. +|..+.++..|.++|+++.  ..|++|++++.||++.+||..++.    
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----  309 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----  309 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce----
Confidence            468999999999999999999999999995 5788889999999999987  567899999999999999987763    


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-C
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G  310 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d  310 (536)
                               ....+.-|+.+-.++.| +.+.|++++.|+.|+++.+....++.++. |.+.|.++.  |.+.+|++++ |
T Consensus       310 ---------~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD  380 (524)
T KOG0273|consen  310 ---------VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDD  380 (524)
T ss_pred             ---------EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCC
Confidence                     44455568887788899 78899999999999999999888888887 999999999  5599999999 8


Q ss_pred             CcEEEEeCCCCcEEEEEccccccceEEEEEeCCC---------CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          311 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG---------DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       311 ~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~---------~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      ++++||+.........+. +|...|+.+.|+|+|         ..+++++.|++|++||+..+      .++.++..|..
T Consensus       381 ~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------v~i~~f~kH~~  453 (524)
T KOG0273|consen  381 GTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------VPIHTLMKHQE  453 (524)
T ss_pred             CeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC------ceeEeeccCCC
Confidence            999999999888888885 699999999999965         47999999999999999999      88999999999


Q ss_pred             CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE--EEEecCCEEEEecC
Q 009373          382 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGE  457 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~  457 (536)
                      +|.+++|+|  .++++|+.||.|.+|+.++.+.                   .+...+. ..|+  ++...|++|..+-.
T Consensus       454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l-------------------~~s~~~~-~~Ifel~Wn~~G~kl~~~~s  513 (524)
T KOG0273|consen  454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL-------------------VKSYQGT-GGIFELCWNAAGDKLGACAS  513 (524)
T ss_pred             ceEEEEecCCCcEEEecCCCCeeEeccccchhe-------------------eEeecCC-CeEEEEEEcCCCCEEEEEec
Confidence            999999986  7999999999999999988422                   2222222 2344  45556779999999


Q ss_pred             CCeEEEEeCC
Q 009373          458 EGIVRIWNFS  467 (536)
Q Consensus       458 Dg~i~vW~~~  467 (536)
                      ||.+++-|+.
T Consensus       514 d~~vcvldlr  523 (524)
T KOG0273|consen  514 DGSVCVLDLR  523 (524)
T ss_pred             CCCceEEEec
Confidence            9999998874

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-33  Score=269.00  Aligned_cols=287  Identities=21%  Similarity=0.278  Sum_probs=248.3

Q ss_pred             ceeeeeCccccEEEEEEe-cCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVL-ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~-~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      .+..+-|..+.|..|.|- |+.++||.++..+.+|+|++.+..+. .+.+|...|+++.  .+|.+|+||+.|.++++|.
T Consensus       315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr  393 (775)
T KOG0319|consen  315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR  393 (775)
T ss_pred             EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence            455667888999999886 56689999999999999999887776 7899999999998  6677999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE---eEee-------eccc
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC---LKVL-------RHSD  293 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-------~~~~  293 (536)
                      ++.+.         ....+.....+|++.|.++++   ....|+++|.|+++++|++...+.   ...+       .|..
T Consensus       394 ~~~~~---------~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK  464 (775)
T KOG0319|consen  394 LNNNC---------SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK  464 (775)
T ss_pred             ecCCc---------chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc
Confidence            84432         223456667899999999999   346899999999999999876211   1111       1888


Q ss_pred             cEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          294 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       294 ~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                      .|++++  |+.+++++|+ |.+.++|++.......++. ||...+.++.|+|..+.++|+|.|++|+||.+.+.      
T Consensus       465 dIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f------  537 (775)
T KOG0319|consen  465 DINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF------  537 (775)
T ss_pred             cccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccc------
Confidence            999887  9999999999 9999999999989888886 79999999999999999999999999999999998      


Q ss_pred             ceeeeccCCCCCeEEEEE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec
Q 009373          371 LLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG  448 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  448 (536)
                      .++.++.||...|....|  ++..|++++.||-|++|++++                   ..+...+.+|+..|++++.+
T Consensus       538 SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt-------------------~eC~~tlD~H~DrvWaL~~~  598 (775)
T KOG0319|consen  538 SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT-------------------NECEMTLDAHNDRVWALSVS  598 (775)
T ss_pred             eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc-------------------hhhhhhhhhccceeEEEeec
Confidence            899999999999999999  468999999999999999998                   56777889999999999977


Q ss_pred             CC--EEEEecCCCeEEEEeCCchhhH
Q 009373          449 AD--RIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       449 ~~--~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      +.  .++||+.||.|.+|.=.+..+.
T Consensus       599 ~~~~~~~tgg~Dg~i~~wkD~Te~~~  624 (775)
T KOG0319|consen  599 PLLDMFVTGGGDGRIIFWKDVTEEEQ  624 (775)
T ss_pred             CccceeEecCCCeEEEEeecCcHHHH
Confidence            65  8999999999999987665444

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.8e-33  Score=270.48  Aligned_cols=281  Identities=21%  Similarity=0.269  Sum_probs=231.1

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------------------------------ceeeeeCC
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------------------------------FSIASSKP  198 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-------------------------------~~~~~~~~  198 (536)
                      ...++.--...++|..|++++.+||.|-.|..|++|.+...                               ....++.+
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            34555566678999999999999999999999999988731                               12344678


Q ss_pred             CCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCe
Q 009373          199 LGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT  274 (536)
Q Consensus       199 ~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~  274 (536)
                      |.++|+..+  |+.++|++++.|+++++|.+.+.             .....+.||..+|.++.|  .|-+|+|||.|++
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~-------------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t  516 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW-------------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT  516 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccc-------------eeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence            999997655  99999999999999999999774             477888999999999999  5679999999999


Q ss_pred             EEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEE
Q 009373          275 VRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG  350 (536)
Q Consensus       275 i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg  350 (536)
                      .++|......+.+.+. |-+.|.|+.  |+..++++|+ |.+|++||+.+|..++.|. ||.++|.+++|+|+|.+|++|
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg  595 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASG  595 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeec
Confidence            9999999888888877 888888877  9999999999 8999999999999999995 799999999999999999999


Q ss_pred             cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCce-----e
Q 009373          351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV-----S  423 (536)
Q Consensus       351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-----~  423 (536)
                      +.||.|.+||+.++      ..+..+.+|++.|.+|.|+  +..||+|+.|.+|++||+...........-...     .
T Consensus       596 ~ed~~I~iWDl~~~------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~  669 (707)
T KOG0263|consen  596 DEDGLIKIWDLANG------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQ  669 (707)
T ss_pred             ccCCcEEEEEcCCC------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccc
Confidence            99999999999999      7889999999999999997  589999999999999999865433111000000     0


Q ss_pred             eEEeeCCCeeeeccccccEEEEEecCC
Q 009373          424 RVIEVEPPQRMLHGFECNLLSVDIGAD  450 (536)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~v~~~~~~~~  450 (536)
                      ...........+.....+|..+.|.-+
T Consensus       670 ~~~~~~~llgs~~tK~tpv~~l~Ftrr  696 (707)
T KOG0263|consen  670 ENNASSLLLGSFYTKNTPVVGLHFTRR  696 (707)
T ss_pred             cCCCCcceeeeeeecCceEEEEEEecc
Confidence            000111223344455567888888765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.1e-32  Score=255.07  Aligned_cols=276  Identities=32%  Similarity=0.500  Sum_probs=233.5

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ++++.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+..+  .++++.+++++.||.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            35778999999999999999999999999999999999998888888887776544  4788899999999999999997


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      ++             .....+..|...|.++.|  ++..+++++.||.|.+||+.+++....+. |...+.++.  +++.
T Consensus        82 ~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  148 (289)
T cd00200          82 TG-------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT  148 (289)
T ss_pred             cc-------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence            64             245566788889999999  34677777779999999999888888877 788888887  6678


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      ++++++ ++.+++||+++++.+..+. .|...+.++.|+|+++.+++++.||.|++||++..      ..+..+..|...
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~  221 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG------KCLGTLRGHENG  221 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCC------ceecchhhcCCc
Confidence            999888 9999999999988888876 58889999999999999999999999999999887      566677789999


Q ss_pred             eEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCC
Q 009373          383 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEE  458 (536)
Q Consensus       383 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~D  458 (536)
                      |.++.|++  .++++++.||.|++||+.+..                   ....+.+|...+.++.+++  .+|++++.|
T Consensus       222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  282 (289)
T cd00200         222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGE-------------------CVQTLSGHTNSVTSLAWSPDGKRLASGSAD  282 (289)
T ss_pred             eEEEEEcCCCcEEEEEcCCCcEEEEEcCCce-------------------eEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence            99999987  567777779999999998632                   1222345666777777766  599999999


Q ss_pred             CeEEEEe
Q 009373          459 GIVRIWN  465 (536)
Q Consensus       459 g~i~vW~  465 (536)
                      |.|++|+
T Consensus       283 ~~i~iw~  289 (289)
T cd00200         283 GTIRIWD  289 (289)
T ss_pred             CeEEecC
Confidence            9999996

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-32  Score=258.99  Aligned_cols=317  Identities=19%  Similarity=0.226  Sum_probs=258.6

Q ss_pred             eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCC-CcEEEEEcccC
Q 009373          154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTD-GFIHCWRAVEV  230 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d-g~i~vwd~~~~  230 (536)
                      +......|++.+|++..+.|++|-..|...+|.+..-..++.+.-...+|..++  ..|+.|+.|+.. |.+.||++.+.
T Consensus       261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            334458899999999999999999999999999999999998877777777666  459999998876 89999999664


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l  305 (536)
                                   ..+...++|...++++++  ||.++++|+.||.|+|||..++-|..++. |...|+.+.  ..++.+
T Consensus       341 -------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l  407 (893)
T KOG0291|consen  341 -------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL  407 (893)
T ss_pred             -------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE
Confidence                         366778899999999999  77899999999999999999999999998 999999887  789999


Q ss_pred             EEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCccccccceeeeccCCCCCe
Q 009373          306 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      ++.+ ||+|+.||+...+..+++..+...+..|++..|.|.++++|+.|. .|.+|++.++      +.+..+.||.+||
T Consensus       408 lssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG------qllDiLsGHEgPV  481 (893)
T KOG0291|consen  408 LSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG------QLLDILSGHEGPV  481 (893)
T ss_pred             EEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC------eeeehhcCCCCcc
Confidence            9998 999999999999999999877777889999999999999999886 4999999999      7889999999999


Q ss_pred             EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeE
Q 009373          384 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV  461 (536)
Q Consensus       384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i  461 (536)
                      .+++|+|  +.|+++|+|.+|++||+-.....                 ....-..|....+++.|+|+.|+.+..||.|
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-----------------vEtl~i~sdvl~vsfrPdG~elaVaTldgqI  544 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-----------------VETLEIRSDVLAVSFRPDGKELAVATLDGQI  544 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEEeeccCce-----------------eeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence            9999986  89999999999999998652111                 0111123334445555667899999999999


Q ss_pred             EEEeCCchhhHHHHHHh--hhcccch--h------HHHhhhhccccccCCCCcce
Q 009373          462 RIWNFSQAFEIERRARA--LRGIRLE--N------RMRRRKLQTEMSSKGGRTDQ  506 (536)
Q Consensus       462 ~vW~~~~~~~~~~~~~~--~~~~~~~--~------~~~~~~~~~~~~~~g~~~~~  506 (536)
                      .+||...+.++......  +.+.|..  .      ...+.-+.++.++||..|.+
T Consensus       545 tf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA  599 (893)
T KOG0291|consen  545 TFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILA  599 (893)
T ss_pred             EEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEe
Confidence            99999998877443221  1111111  0      11123456788888888776

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.9e-34  Score=259.75  Aligned_cols=285  Identities=18%  Similarity=0.300  Sum_probs=238.4

Q ss_pred             cCCccceeeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCC-CceeeeeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009373          145 FLGRYSIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDG  220 (536)
Q Consensus       145 ~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg  220 (536)
                      +..+..+.++.||+..|+++.|.| .+.+|++|+.|+.|+||++-. +.+++++.+|..+|.++.  .+|..+++++.|+
T Consensus       201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~  280 (503)
T KOG0282|consen  201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR  280 (503)
T ss_pred             eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence            345556899999999999999999 789999999999999999976 899999999999997765  7899999999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e-CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY  296 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~  296 (536)
                      .+++||+++|.             +...+ .-...+.|+.|  + .+.+++|+.|+.|+.||+++++.++.+. |-+.|.
T Consensus       281 ~lKlwDtETG~-------------~~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~  346 (503)
T KOG0282|consen  281 FLKLWDTETGQ-------------VLSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL  346 (503)
T ss_pred             eeeeeccccce-------------EEEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence            99999999984             23333 23446778888  3 4889999999999999999999998887 888899


Q ss_pred             EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      .+.  ++++.+++++ |++++||+.+.+-.+..+...+.....++..+|++++++.=+.|..|.+|.+...-   ....-
T Consensus       347 ~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~---r~nkk  423 (503)
T KOG0282|consen  347 DITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF---RLNKK  423 (503)
T ss_pred             eeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc---ccCHh
Confidence            888  8899999888 79999999999887776654455567789999999999999999999999976552   22445


Q ss_pred             eeccCCCC--CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC
Q 009373          374 ATWIPHTG--PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA  449 (536)
Q Consensus       374 ~~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  449 (536)
                      ..+.+|..  .-..+.|+|  .+|++|+.||.+.+||.++.                   .....+..|...+..+.+.+
T Consensus       424 K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-------------------kl~~~lkah~~~ci~v~wHP  484 (503)
T KOG0282|consen  424 KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-------------------KLVSKLKAHDQPCIGVDWHP  484 (503)
T ss_pred             hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-------------------hhhhccccCCcceEEEEecC
Confidence            56778854  445667776  79999999999999999984                   33344677878888888876


Q ss_pred             C---EEEEecCCCeEEEEe
Q 009373          450 D---RIVCGGEEGIVRIWN  465 (536)
Q Consensus       450 ~---~l~sg~~Dg~i~vW~  465 (536)
                      .   .+||+|.||.|++|+
T Consensus       485 ~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  485 VEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCcceeEecccCceeEecC
Confidence            5   899999999999996

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1e-32  Score=242.08  Aligned_cols=279  Identities=19%  Similarity=0.220  Sum_probs=234.4

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC--CCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGCTIRAVAADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ....+.||++.|+++.|+.+|.+||||+.+|.|+||...++.....+.  .....-++++|.+..|+.|+.||.+.+|.+
T Consensus        98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i  177 (399)
T KOG0296|consen   98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI  177 (399)
T ss_pred             ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence            467899999999999999999999999999999999999998888774  334445677799999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--cc--ccEEEEeec
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HS--DWVYGLAPH  301 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~--~~v~~~~~~  301 (536)
                      ..+             .....+.||+.++++=.|  +|++++++..||+|++||..+++++..+.  ..  .+..++...
T Consensus       178 p~~-------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~  244 (399)
T KOG0296|consen  178 PSQ-------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA  244 (399)
T ss_pred             CCc-------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccc
Confidence            653             356678899999999988  89999999999999999999999998887  22  333344477


Q ss_pred             CCEEEEec-CCcEEEEeCCCCcEEEEEcc-------ccccceEEEEEeC---CCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          302 DTTVASTS-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSH---TGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-------~~~~~i~~l~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                      +..++.|+ ++.+++-+..+|+.+.....       .+...+.++.+.|   .=.+.|+|+-||+|.|||+...      
T Consensus       245 ~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~------  318 (399)
T KOG0296|consen  245 GSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS------  318 (399)
T ss_pred             cceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc------
Confidence            88888888 88999999888888776652       3555566666555   4468899999999999999876      


Q ss_pred             ceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC
Q 009373          371 LLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA  449 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  449 (536)
                       .++..-.|..+|+.+.|.+ .+|++++.||.|+.||.+++                   .....+.||...|.++..++
T Consensus       319 -~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG-------------------~l~~~y~GH~~~Il~f~ls~  378 (399)
T KOG0296|consen  319 -TLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG-------------------QLKFTYTGHQMGILDFALSP  378 (399)
T ss_pred             -hhheeccCCCceEEEEEcCcchheeeccCceEEeeecccc-------------------ceEEEEecCchheeEEEEcC
Confidence             3444557899999999988 89999999999999999995                   44556899999999888766


Q ss_pred             C--EEEEecCCCeEEEEeCC
Q 009373          450 D--RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       450 ~--~l~sg~~Dg~i~vW~~~  467 (536)
                      +  +++|+|.|++.+||+++
T Consensus       379 ~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  379 QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CCcEEEEecCCCeEEEEecC
Confidence            5  99999999999999875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.8e-33  Score=242.44  Aligned_cols=325  Identities=16%  Similarity=0.156  Sum_probs=261.6

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      .++.+|..|+++|.+++.+|+.++++||+.|....+|+..+|.....+.+|...|.++.  .+|.+|+||+.+|.|.||+
T Consensus        55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            36789999999999999999999999999999999999999999999999999988765  7899999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEE--eec
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APH  301 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~--~~~  301 (536)
                      ..++.             ....+...-+.+.=+.|  .+..|++|+.||.+-+|.+.+....+.+. |..++++=  .|+
T Consensus       135 ~stg~-------------~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd  201 (399)
T KOG0296|consen  135 VSTGG-------------EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD  201 (399)
T ss_pred             cccCc-------------eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence            98764             23333333445555566  45789999999999999999876666666 88887764  499


Q ss_pred             CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc--eeeeccC
Q 009373          302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL--LVATWIP  378 (536)
Q Consensus       302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~~~~~~~  378 (536)
                      |+.++++. ||+|++||+.++.++..+.........++.++..+..++.|+.++.+++-+..+++...-..  .......
T Consensus       202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~  281 (399)
T KOG0296|consen  202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS  281 (399)
T ss_pred             CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence            99999999 89999999999999999875556678889999999999999999999998887773211111  0111124


Q ss_pred             CCCCeEEEEEcC-----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC-CEE
Q 009373          379 HTGPVNSLAFEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA-DRI  452 (536)
Q Consensus       379 h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l  452 (536)
                      +...+.|+.+.|     .+.++|+-||+|.|||+....                    .+..-.|...|..+.|.+ .+|
T Consensus       282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--------------------~R~~c~he~~V~~l~w~~t~~l  341 (399)
T KOG0296|consen  282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--------------------LRHICEHEDGVTKLKWLNTDYL  341 (399)
T ss_pred             chhhhhhhhhcccccccchhhcccccceEEEEecccch--------------------hheeccCCCceEEEEEcCcchh
Confidence            556666666654     688999999999999998632                    223355778899999988 599


Q ss_pred             EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCc
Q 009373          453 VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM  516 (536)
Q Consensus       453 ~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  516 (536)
                      ++++.||.|+.||..+|.+....          ...+..+..++.+|+++++.+.|.+.+...|
T Consensus       342 ~t~c~~g~v~~wDaRtG~l~~~y----------~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF  395 (399)
T KOG0296|consen  342 LTACANGKVRQWDARTGQLKFTY----------TGHQMGILDFALSPQKRLVVTVSDDNTALVF  395 (399)
T ss_pred             eeeccCceEEeeeccccceEEEE----------ecCchheeEEEEcCCCcEEEEecCCCeEEEE
Confidence            99999999999999999766543          2334557899999999999998887766555

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3.4e-32  Score=226.70  Aligned_cols=243  Identities=21%  Similarity=0.299  Sum_probs=205.2

Q ss_pred             ccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEE
Q 009373          148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIH  223 (536)
Q Consensus       148 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~  223 (536)
                      ....++++.....|..+...|+++.||+|+. ..||+||+.++.  ++.++.+|...|.++  ..+|+.+++|+.||+++
T Consensus        30 G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~k  108 (311)
T KOG0315|consen   30 GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVK  108 (311)
T ss_pred             CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEE
Confidence            3457889888999999999999999999885 679999998774  588899997777665  48999999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA  299 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~  299 (536)
                      |||++..              .......|.++|+++..  +...|++|..+|.|++||+....+...+-  ....|.++.
T Consensus       109 IWdlR~~--------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~  174 (311)
T KOG0315|consen  109 IWDLRSL--------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT  174 (311)
T ss_pred             EEeccCc--------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE
Confidence            9999763              23334568899999999  55689999999999999999887776664  445666666


Q ss_pred             --ecCCEEEEec-CCcEEEEeCCCCc------EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          300 --PHDTTVASTS-GSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       300 --~~~~~l~~~~-d~~i~i~d~~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                        |+|.+++++. .|.+++|++-...      ++..+. .|.+.+..+.++|++++|++++.|.+++||+..+.     +
T Consensus       175 v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-----~  248 (311)
T KOG0315|consen  175 VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-----F  248 (311)
T ss_pred             EcCCCcEEEEecCCccEEEEEccCCCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCceEEEEecCCc-----e
Confidence              9999999998 6999999997653      344453 69999999999999999999999999999998776     2


Q ss_pred             ceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCccc
Q 009373          371 LLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      +....+.+|...++..+|+  +.||++|+.|+.+++||+..++
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence            4556778999999999997  4899999999999999998853

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.6e-31  Score=284.45  Aligned_cols=292  Identities=13%  Similarity=0.171  Sum_probs=223.1

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----c----eeeeeCCCCceEEEEe---cCCCEEEEEeCCCc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----F----SIASSKPLGCTIRAVA---ADKKLLVAGGTDGF  221 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----~----~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~  221 (536)
                      .+.+|.+.|.+++|+|++++||||+.|+.|+||++.+.    .    ....+.. ...+.++.   +++.+|++++.||+
T Consensus       478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCe
Confidence            34569999999999999999999999999999997542    1    1122222 23344443   35789999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEE
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL  298 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~  298 (536)
                      |++||+.++.             ....+.+|.+.|.+++|   ++.+|++|+.||+|++||++++..+..+.+...+.++
T Consensus       557 v~lWd~~~~~-------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v  623 (793)
T PLN00181        557 VQVWDVARSQ-------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV  623 (793)
T ss_pred             EEEEECCCCe-------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence            9999997642             55667899999999999   3578999999999999999999998888866778877


Q ss_pred             e---ecCCEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          299 A---PHDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       299 ~---~~~~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      .   +++.++++|+ |+.|++||+++++ .+..+. +|...|.++.|. ++.+|++++.|+.|++||++.........++
T Consensus       624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l  701 (793)
T PLN00181        624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPL  701 (793)
T ss_pred             EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcce
Confidence            6   4688899888 8999999998876 345553 799999999997 6789999999999999999764322223567


Q ss_pred             eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--
Q 009373          374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--  449 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--  449 (536)
                      ..+.+|...+++++|++  .+|++|+.|+.|++|+.............. .   .  .........+...|.++.+++  
T Consensus       702 ~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~-~---~--~~~~~~~~~~~~~V~~v~ws~~~  775 (793)
T PLN00181        702 HSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT-I---D--PVSGLEVDDASQFISSVCWRGQS  775 (793)
T ss_pred             EEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc-C---C--cccccccCCCCcEEEEEEEcCCC
Confidence            78899999999999975  799999999999999986542221100000 0   0  000011234455566666654  


Q ss_pred             CEEEEecCCCeEEEEeC
Q 009373          450 DRIVCGGEEGIVRIWNF  466 (536)
Q Consensus       450 ~~l~sg~~Dg~i~vW~~  466 (536)
                      ..|++|+.||.|+||++
T Consensus       776 ~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        776 STLVAANSTGNIKILEM  792 (793)
T ss_pred             CeEEEecCCCcEEEEec
Confidence            59999999999999986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.9e-32  Score=266.31  Aligned_cols=279  Identities=24%  Similarity=0.403  Sum_probs=233.4

Q ss_pred             eeeeeCc-cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009373          151 IDVLYGH-TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       151 ~~~l~~h-~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vw  225 (536)
                      ...+.+| ...|.++.|+++|+.+++++.|+.+++|+..++.  ....+.+|...|.++  ++++.++++|+.|++|++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            4555555 8999999999999999999999999999998877  677778888877655  5999999999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  300 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~  300 (536)
                      |+...            .....++.+|...|++++|  +++.+++|+.|++|++||++++++...+. |.+.|.+++  +
T Consensus       231 d~~~~------------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~  298 (456)
T KOG0266|consen  231 DLKDD------------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP  298 (456)
T ss_pred             eccCC------------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence            99433            3467888999999999999  66899999999999999999999999998 999999887  8


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCc--EEEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                      +++++++++ |+.|++||+.++.  +...+.. +..  .++++.|+|++.++++++.|+.+++||+...      ..+..
T Consensus       299 d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~------~~~~~  371 (456)
T KOG0266|consen  299 DGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG------KSVGT  371 (456)
T ss_pred             CCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC------cceee
Confidence            899999999 9999999999999  4555543 443  5999999999999999999999999999988      67788


Q ss_pred             ccCCCCCeEEEE---Ec--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc-cccEEEEEec-
Q 009373          376 WIPHTGPVNSLA---FE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF-ECNLLSVDIG-  448 (536)
Q Consensus       376 ~~~h~~~v~~l~---~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~-  448 (536)
                      +.+|...+.++.   ..  +.++++|+.|+.|++||+.++.                   ....+.+| ...+..+.++ 
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~-------------------~~~~l~~h~~~~~~~~~~~~  432 (456)
T KOG0266|consen  372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG-------------------ILQRLEGHSKAAVSDLSSHP  432 (456)
T ss_pred             ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc-------------------hhhhhcCCCCCceeccccCC
Confidence            888887654432   12  3799999999999999998742                   22334566 5555555554 


Q ss_pred             -CCEEEEec--CCCeEEEEeCC
Q 009373          449 -ADRIVCGG--EEGIVRIWNFS  467 (536)
Q Consensus       449 -~~~l~sg~--~Dg~i~vW~~~  467 (536)
                       ..++++++  .|+.|++|...
T Consensus       433 ~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  433 TENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CcCeeeecCcCCCceEEEecCC
Confidence             45888888  79999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-33  Score=245.85  Aligned_cols=278  Identities=18%  Similarity=0.230  Sum_probs=229.5

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~v  224 (536)
                      ..+++..|++.|.-+.|+++|++|||++.|.+..+|.+....   ..+++.+|..+|..+  +||.++|++++.|..+.+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            457889999999999999999999999999999999986543   477888998888655  599999999999999999


Q ss_pred             EEcccCccceecccCcccccceEEe-eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~  299 (536)
                      ||+.+|..             ...+ .+|...+.+.+|  |+..+++|+.|+++..||+... .....+  ....|.+++
T Consensus       296 wDv~tgd~-------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dla  361 (519)
T KOG0293|consen  296 WDVDTGDL-------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLA  361 (519)
T ss_pred             ccCCcchh-------------hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEE
Confidence            99998742             1111 234578899999  8899999999999999998643 333333  334566666


Q ss_pred             --ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373          300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                        ++|+++++.. |..|++|+.++......+.  ...+|++++.+.+++++++.-.+..+++||+...      ..+..+
T Consensus       362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~------~lv~kY  433 (519)
T KOG0293|consen  362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN------KLVRKY  433 (519)
T ss_pred             EcCCCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh------hHHHHh
Confidence              8999887776 9999999998876654443  5668999999999999999999999999999977      778888


Q ss_pred             cCCCCC--eEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-
Q 009373          377 IPHTGP--VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-  450 (536)
Q Consensus       377 ~~h~~~--v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  450 (536)
                      .||...  |..-+|.+   .++++||.|+.|+||+..+                   ..+...+.||...|.+++++|. 
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s-------------------gkll~~LsGHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS-------------------GKLLAVLSGHSKTVNCVSWNPAD  494 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecCCCceEEEEEccC-------------------CceeEeecCCcceeeEEecCCCC
Confidence            898764  33445543   7999999999999999988                   4556778999999999999886 


Q ss_pred             --EEEEecCCCeEEEEeCCc
Q 009373          451 --RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       451 --~l~sg~~Dg~i~vW~~~~  468 (536)
                        ++|+||+||+||||....
T Consensus       495 p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  495 PEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HHHhhccCCCCeEEEecCCc
Confidence              999999999999998874

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.8e-33  Score=242.00  Aligned_cols=245  Identities=24%  Similarity=0.291  Sum_probs=217.0

Q ss_pred             cccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeeeeCCCCceEEEEe--cCCCEEEEEeCC
Q 009373          143 KTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA--ADKKLLVAGGTD  219 (536)
Q Consensus       143 ~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~d  219 (536)
                      +........+.|+||+++|..++|+..|++|++++.|-.+++||.++ .++++.+.+|...|.++.  |.|+++++++.|
T Consensus       135 ~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD  214 (406)
T KOG0295|consen  135 FDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD  214 (406)
T ss_pred             EEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence            33333344789999999999999999999999999999999999987 567777777776665554  999999999999


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY  296 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~  296 (536)
                      .+|+.|++.++.             ++.++.+|...|..+..  ||..+++++.|.+|++|-+.++++...++ |..+|-
T Consensus       215 ~tik~We~~tg~-------------cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE  281 (406)
T KOG0295|consen  215 NTIKAWECDTGY-------------CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVE  281 (406)
T ss_pred             cceeEEecccce-------------eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence            999999998874             78889999999999999  78899999999999999999998888777 776666


Q ss_pred             EEe--e---------------cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          297 GLA--P---------------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       297 ~~~--~---------------~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                      +++  |               .+.++++++ |++|++||+.++.++.++. +|...|..++|+|.|+||+++.+|+++++
T Consensus       282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrv  360 (406)
T KOG0295|consen  282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRV  360 (406)
T ss_pred             EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEE
Confidence            665  2               135888888 9999999999999999996 79999999999999999999999999999


Q ss_pred             EEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEEC
Q 009373          359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  407 (536)
                      ||+++.      .+..++.+|..-|++++|+.  .++++|+-|.++++|.-
T Consensus       361 wdl~~~------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  361 WDLKNL------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             EEeccc------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999      78999999999999999974  69999999999999964

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.3e-32  Score=238.97  Aligned_cols=275  Identities=19%  Similarity=0.304  Sum_probs=232.1

Q ss_pred             eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373          193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  268 (536)
Q Consensus       193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  268 (536)
                      .+.+.+|.+.|.|+.  |.+..+++|+.|++++|||+.++.             ...++.||-..|..+++  -..++++
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------------LkltltGhi~~vr~vavS~rHpYlFs  210 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------------LKLTLTGHIETVRGVAVSKRHPYLFS  210 (460)
T ss_pred             hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------EEEeecchhheeeeeeecccCceEEE
Confidence            344578999998887  778899999999999999998874             66788899999999999  4479999


Q ss_pred             EecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC
Q 009373          269 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  344 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~  344 (536)
                      ++.|+.|+.||++..+.+..+. |-..|+|++  |.-..+++++ |.++++||+++...+..+. ||...|..+.+.|..
T Consensus       211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~d  289 (460)
T KOG0285|consen  211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTD  289 (460)
T ss_pred             ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCC
Confidence            9999999999999999888776 999999998  6788888888 9999999999999999996 799999999999988


Q ss_pred             CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCce
Q 009373          345 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV  422 (536)
Q Consensus       345 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  422 (536)
                      ..+++|+.|++|++||++.+      +...++..|...|.+++.+|  ..+++++.| .|+-|++..+.           
T Consensus       290 pqvit~S~D~tvrlWDl~ag------kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~-----------  351 (460)
T KOG0285|consen  290 PQVITGSHDSTVRLWDLRAG------KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE-----------  351 (460)
T ss_pred             CceEEecCCceEEEeeeccC------ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccc-----------
Confidence            89999999999999999999      77888899999999999998  466666666 69999998742           


Q ss_pred             eeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCC
Q 009373          423 SRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG  501 (536)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  501 (536)
                              ....+.+|...+.+++.+.+ ++++|++.|.+.+||..+|...+.......+-.++  ....+++.+|...|
T Consensus       352 --------f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~--sEagI~as~fDktg  421 (460)
T KOG0285|consen  352 --------FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLE--SEAGIFASCFDKTG  421 (460)
T ss_pred             --------hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccc--cccceeEEeecccC
Confidence                    22336788899999997766 99999999999999999998877664433322221  23345677888888


Q ss_pred             CCcceeEe
Q 009373          502 GRTDQCSV  509 (536)
Q Consensus       502 ~~~~~~~~  509 (536)
                      .+|.+|--
T Consensus       422 ~rlit~ea  429 (460)
T KOG0285|consen  422 SRLITGEA  429 (460)
T ss_pred             ceEEeccC
Confidence            88887743

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-30  Score=239.62  Aligned_cols=342  Identities=18%  Similarity=0.197  Sum_probs=260.1

Q ss_pred             cCCccceeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCc
Q 009373          145 FLGRYSIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGF  221 (536)
Q Consensus       145 ~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~  221 (536)
                      |...-.+-.+.||...|.+++|-|... .++||+.|++|.+|+-..-+-..++..|..-|.|+  +|||.++++.+.||+
T Consensus       134 ~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  134 WDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             ecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc
Confidence            444456789999999999999998754 89999999999999977777777888888877766  499999999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEee---CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccc---
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLW---EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD---  293 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---  293 (536)
                      |.+||-.+++             .+..+.   +|.+.|.+++|  |+..+++++.|.+++|||+.+.++++++....   
T Consensus       214 i~iyDGktge-------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~  280 (603)
T KOG0318|consen  214 IYIYDGKTGE-------------KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE  280 (603)
T ss_pred             EEEEcCCCcc-------------EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence            9999988774             333343   89999999999  78899999999999999999999999987333   


Q ss_pred             --cEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373          294 --WVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       294 --~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                        .|-++-+.+.++....+|.|.+++...+..+..+. +|...|+++..+|++++|++|+.||.|.-|+...+..     
T Consensus       281 dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~-----  354 (603)
T KOG0318|consen  281 DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS-----  354 (603)
T ss_pred             ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc-----
Confidence              33444464444444459999999999999877775 7999999999999999999999999999999988731     


Q ss_pred             eeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCC--CCCCceee--------------------EEee
Q 009373          372 LVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRP--TSGKRVSR--------------------VIEV  428 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~--------------------~~~~  428 (536)
                      .-..-.+|...|.+++-+. ..+++.+.|.++++.++....-....  ..+.....                    +...
T Consensus       355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~  434 (603)
T KOG0318|consen  355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ  434 (603)
T ss_pred             cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence            1111267999999999987 89999999999999988532111110  00000000                    0011


Q ss_pred             CCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeE
Q 009373          429 EPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS  508 (536)
Q Consensus       429 ~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  508 (536)
                      ......--+......+++++++.++.|+.||.|+||.+..+...+....        ...+-.++.+++||||..+|+|-
T Consensus       435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~--------~~h~a~iT~vaySpd~~yla~~D  506 (603)
T KOG0318|consen  435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL--------LEHRAAITDVAYSPDGAYLAAGD  506 (603)
T ss_pred             CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee--------ecccCCceEEEECCCCcEEEEec
Confidence            1111122344556777888888999999999999999998764332111        11233468999999999999975


Q ss_pred             eeccc
Q 009373          509 VAAKK  513 (536)
Q Consensus       509 ~~~~~  513 (536)
                      ...+.
T Consensus       507 a~rkv  511 (603)
T KOG0318|consen  507 ASRKV  511 (603)
T ss_pred             cCCcE
Confidence            44443

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.9e-32  Score=261.39  Aligned_cols=231  Identities=23%  Similarity=0.375  Sum_probs=204.3

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      ......+++.||.++|+.+.|+|+.++|+++|.|++||+|.+.+..++-.+.+|..+|.++.  |.|-+++||+.|++.+
T Consensus       439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr  518 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR  518 (707)
T ss_pred             cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence            44456778999999999999999999999999999999999999999999999999987655  8899999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe-
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-  299 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~-  299 (536)
                      +|....             ..+.+.+.+|.+.|.|+.|  +..++++||.|.+|++||+.+|..++.|. |.++|.+++ 
T Consensus       519 LWs~d~-------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~  585 (707)
T KOG0263|consen  519 LWSTDH-------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF  585 (707)
T ss_pred             eeeccc-------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence            999855             3477788999999999999  66899999999999999999999999998 999999987 


Q ss_pred             -ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc----------
Q 009373          300 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----------  367 (536)
Q Consensus       300 -~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~----------  367 (536)
                       |+|++|++|+ |+.|.+||+.+++.+..+. +|.+.|+++.|+.+|..||+|+.|.+|++||+......          
T Consensus       586 Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~  664 (707)
T KOG0263|consen  586 SPCGRYLASGDEDGLIKIWDLANGSLVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSN  664 (707)
T ss_pred             cCCCceEeecccCCcEEEEEcCCCcchhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccccc
Confidence             9999999999 8999999999999999987 69999999999999999999999999999998654322          


Q ss_pred             --------cccceeeeccCCCCCeEEEEEcC
Q 009373          368 --------ANVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       368 --------~~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                              .....+.++.....+|.+|.|..
T Consensus       665 ~~~~~~~~~~~~llgs~~tK~tpv~~l~Ftr  695 (707)
T KOG0263|consen  665 SAITQENNASSLLLGSFYTKNTPVVGLHFTR  695 (707)
T ss_pred             ccccccCCCCcceeeeeeecCceEEEEEEec
Confidence                    11224455555666888888864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.9e-31  Score=253.01  Aligned_cols=279  Identities=18%  Similarity=0.260  Sum_probs=239.4

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      -.+.||...|.+++++.+...++||+ .+.+++|+..+.++++++...-.-..+|.|.++++++|...|.+.++|+.+..
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~  445 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS  445 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence            56789999999999998887777776 57899999999999999987755556677999999999999999999986642


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC-----ceE--------eEeeeccccEE
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-----LKC--------LKVLRHSDWVY  296 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~-----~~~--------~~~~~~~~~v~  296 (536)
                                   .+.+...|.+.|.+++.  ++..+++||.|.+|++||+.-     +..        ..++...+.|.
T Consensus       446 -------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL  512 (888)
T KOG0306|consen  446 -------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL  512 (888)
T ss_pred             -------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence                         44556689999999999  888999999999999999642     111        12344667788


Q ss_pred             EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      |++  |++++++++- |++|+||-+.+.+....+. ||.-+|.|+..+||+++++|||.|.+|+||-+.-+      .+.
T Consensus       513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG------DCH  585 (888)
T KOG0306|consen  513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG------DCH  585 (888)
T ss_pred             EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccc------hhh
Confidence            876  9999999999 9999999999998887775 79999999999999999999999999999999999      788


Q ss_pred             eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--ecC
Q 009373          374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGA  449 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~  449 (536)
                      ..+.+|...|.++.|-|  ..++++|.|+.|+-||-...                   .....+.+|...|++++  ++|
T Consensus       586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF-------------------e~iq~L~~H~~ev~cLav~~~G  646 (888)
T KOG0306|consen  586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF-------------------EEIQKLDGHHSEVWCLAVSPNG  646 (888)
T ss_pred             hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh-------------------hhheeeccchheeeeeEEcCCC
Confidence            99999999999999988  58899999999999998874                   33455778888877776  556


Q ss_pred             CEEEEecCCCeEEEEeCCchh
Q 009373          450 DRIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       450 ~~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      ++++|+|.|.+||+|.-....
T Consensus       647 ~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  647 SFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             CeEEeccCCceeEeeeccCcc
Confidence            699999999999999977643

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=2.7e-31  Score=261.46  Aligned_cols=250  Identities=27%  Similarity=0.407  Sum_probs=224.4

Q ss_pred             ccccCCccceee-eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCC
Q 009373          142 SKTFLGRYSIDV-LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG  220 (536)
Q Consensus       142 ~~~~~~~~~~~~-l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg  220 (536)
                      .+.....+.+.. +.||.+.|.++++...+++|++|+.|.++++||..+|++...+.+|...+.++...+..+++|+.|.
T Consensus       232 ~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~  311 (537)
T KOG0274|consen  232 LWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDN  311 (537)
T ss_pred             EeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCc
Confidence            333334445555 9999999999999877899999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA  299 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  299 (536)
                      +|++|+++++             ..+..+.+|.++|.++..+++++++|+.|++|++||+.+++++..+. |..+|+++.
T Consensus       312 tVkVW~v~n~-------------~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~  378 (537)
T KOG0274|consen  312 TVKVWDVTNG-------------ACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI  378 (537)
T ss_pred             eEEEEeccCc-------------ceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence            9999999765             36677777999999999999999999999999999999999999998 999999999


Q ss_pred             ecC-CEEEEec-CCcEEEEeCCCC-cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373          300 PHD-TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       300 ~~~-~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                      .++ ..+++|+ |++|++||+++. +++.++. +|..-+..+.+  .+++|++++.||+|++||..++      .++.++
T Consensus       379 ~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~------~~~~~~  449 (537)
T KOG0274|consen  379 VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG------ECLRTL  449 (537)
T ss_pred             ecCcceEEeeeeccceEeecCCchhhhhhhhc-CCccccccccc--ccceeEeccccccEEEeecccC------ceeeee
Confidence            877 8999998 999999999999 8888886 68888866655  5789999999999999999998      678888


Q ss_pred             cC-CCCCeEEEEEcCCeEEEEeCCCcEEEEECCccccc
Q 009373          377 IP-HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       377 ~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      .+ |.+.|.++++....+++++.||.+++||++++...
T Consensus       450 ~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  450 EGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             ccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence            88 78999999998788999999999999999986443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8e-33  Score=245.93  Aligned_cols=269  Identities=19%  Similarity=0.244  Sum_probs=220.3

Q ss_pred             HhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 009373          109 CERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE  188 (536)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~  188 (536)
                      ..+|......+.+++.......|......-            -..++.|.++|+++.|++++.+++||+.+|.|++|+..
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnF------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn  168 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNF------------ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN  168 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeH------------HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence            345655545555555555666675533321            23678999999999999999999999999999999975


Q ss_pred             CCceeeeeCCCC-ceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC--
Q 009373          189 DGFSIASSKPLG-CTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--  263 (536)
Q Consensus       189 ~~~~~~~~~~~~-~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--  263 (536)
                      - ..++.++.|. ..|.++  +|+...+++++.||+|+|||.....             ....+.+|.-.|.+++|.+  
T Consensus       169 m-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-------------ee~vL~GHgwdVksvdWHP~k  234 (464)
T KOG0284|consen  169 M-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-------------EERVLRGHGWDVKSVDWHPTK  234 (464)
T ss_pred             h-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-------------hhheeccCCCCcceeccCCcc
Confidence            4 3444444443 666555  5888999999999999999986543             4556789999999999954  


Q ss_pred             CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEE
Q 009373          264 TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA  339 (536)
Q Consensus       264 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~  339 (536)
                      ..+++||.|..|++||.+++.++.++. |...|..+.  +++++|++++ |..+++||+++.+.+.++. +|...++++.
T Consensus       235 gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~  313 (464)
T KOG0284|consen  235 GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLT  313 (464)
T ss_pred             ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeec
Confidence            689999999999999999999999987 999999987  8899999999 9999999999999888886 7999999999


Q ss_pred             EeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          340 RSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       340 ~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      |+|- ..+|.+|+.||.|..|.+....     .....-.+|...|++++|+|  ..|++|+.|.++++|.-..
T Consensus       314 WhP~~~~lftsgg~Dgsvvh~~v~~~~-----p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  314 WHPLNESLFTSGGSDGSVVHWVVGLEE-----PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             cccccccceeeccCCCceEEEeccccc-----cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence            9994 5688999999999999998542     22233358999999999998  7899999999999997653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8e-31  Score=249.99  Aligned_cols=370  Identities=17%  Similarity=0.289  Sum_probs=284.2

Q ss_pred             HHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEE
Q 009373          105 KEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRM  184 (536)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~i  184 (536)
                      +.+.+.+|......+.+.+.+.+...|......            -...++||.+.|+..-|..+.+++++.|.|+.|++
T Consensus       108 ~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~------------Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~  175 (888)
T KOG0306|consen  108 AAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE------------GLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKF  175 (888)
T ss_pred             cceEEEEEcccCceEeecCCCccEEEEEeccce------------eeEEeecchHHHhHHhccCCCeEEEEeccCceEEE
Confidence            444455554444444444455555667654443            34589999999999999988899999999999999


Q ss_pred             EECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc------------------------c--------
Q 009373          185 WHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL------------------------P--------  232 (536)
Q Consensus       185 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------------------~--------  232 (536)
                      ||+++..+..+.-.|.+.+.+++.+++.+++++.|+.+++|++....                        .        
T Consensus       176 WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s  255 (888)
T KOG0306|consen  176 WDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS  255 (888)
T ss_pred             EecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence            99999999999999999999999888999999999999999981100                        0        


Q ss_pred             -------------------------------------c------------------------------------------
Q 009373          233 -------------------------------------H------------------------------------------  233 (536)
Q Consensus       233 -------------------------------------~------------------------------------------  233 (536)
                                                           .                                          
T Consensus       256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~  335 (888)
T KOG0306|consen  256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE  335 (888)
T ss_pred             ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence                                                 0                                          


Q ss_pred             ------------eecccCc------ccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeecccc
Q 009373          234 ------------LFDISGS------EKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW  294 (536)
Q Consensus       234 ------------~~~~~~~------~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  294 (536)
                                  .+.+..+      ........+.+|...|.++++ +.+.++..+..+.+++|+..+.+++.++... .
T Consensus       336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y  414 (888)
T KOG0306|consen  336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-Y  414 (888)
T ss_pred             eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-c
Confidence                        0000000      000112455689999999999 4444444555789999999999999999855 4


Q ss_pred             EEEE--eecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc----
Q 009373          295 VYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----  367 (536)
Q Consensus       295 v~~~--~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~----  367 (536)
                      +.+.  .|.+++++.|. .|.+.+||+.+...+.++. +|.+.|.+++.+||+..+++||.|.+|++||..-....    
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~  493 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQ  493 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCccc
Confidence            4433  39999999999 7999999999999888886 79999999999999999999999999999997421110    


Q ss_pred             --------------------------------------------cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCc
Q 009373          368 --------------------------------------------ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK  401 (536)
Q Consensus       368 --------------------------------------------~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~  401 (536)
                                                                  ..++....+.||.-||.|+..+|  ..++|||.|..
T Consensus       494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  494 KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc
Confidence                                                        11223345678999999998876  78999999999


Q ss_pred             EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhh
Q 009373          402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARAL  479 (536)
Q Consensus       402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~  479 (536)
                      |++|-+.=                   ..+.+.+.+|..+|+++.|-|+  .+.|+|.|+.|+-||-..=+.+.....  
T Consensus       574 VKiWGLdF-------------------GDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~--  632 (888)
T KOG0306|consen  574 VKIWGLDF-------------------GDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG--  632 (888)
T ss_pred             eEEecccc-------------------chhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc--
Confidence            99998753                   4566678999999999998887  889999999999999876555544322  


Q ss_pred             hcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373          480 RGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN  517 (536)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  517 (536)
                              .....-+++.+|+|+.+.+++.+..-+.+.
T Consensus       633 --------H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  633 --------HHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             --------chheeeeeEEcCCCCeEEeccCCceeEeee
Confidence                    233356899999999999999877766554

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.98  E-value=5.4e-31  Score=225.52  Aligned_cols=274  Identities=21%  Similarity=0.298  Sum_probs=222.6

Q ss_pred             eeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373          193 IASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  268 (536)
Q Consensus       193 ~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  268 (536)
                      +..+.+|.+.|+..  .|+|..|++|+.|..|.+|++...            ......+.+|.++|..+.|  +++.+++
T Consensus        40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------------ceN~~~lkgHsgAVM~l~~~~d~s~i~S  107 (338)
T KOG0265|consen   40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------------CENFWVLKGHSGAVMELHGMRDGSHILS  107 (338)
T ss_pred             hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc------------ccceeeeccccceeEeeeeccCCCEEEE
Confidence            44567888888765  599999999999999999997543            2345567799999999999  8999999


Q ss_pred             EecCCeEEEEeCCCceEeEeee-ccccEEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373          269 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  343 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~  343 (536)
                      ++.|++|+.||.++|+++..++ |...|+++.|.   ..++.+++ |+++++||+++...+.++.  ...+++++.|..+
T Consensus       108 ~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~  185 (338)
T KOG0265|consen  108 CGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDT  185 (338)
T ss_pred             ecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEeccc
Confidence            9999999999999999999998 88889988843   34566666 7999999999999988874  6778999999999


Q ss_pred             CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCc
Q 009373          344 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  421 (536)
Q Consensus       344 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  421 (536)
                      +..+.+|+-|+.|++||++.+      .....+.||..+|+.+..++  .++.+-+.|.++++||++.....        
T Consensus       186 s~qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~--------  251 (338)
T KOG0265|consen  186 SDQVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS--------  251 (338)
T ss_pred             ccceeeccccCceeeeccccC------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC--------
Confidence            999999999999999999988      78899999999999999975  79999999999999999864322        


Q ss_pred             eeeEEeeCCCeeeecccc----ccE--EEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc
Q 009373          422 VSRVIEVEPPQRMLHGFE----CNL--LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT  495 (536)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~----~~v--~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (536)
                             .++..++.+|.    ...  .+++++++.+.+|+.|..+++||......+..+    ++      ..-.+.++
T Consensus       252 -------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl----pG------h~gsvn~~  314 (338)
T KOG0265|consen  252 -------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL----PG------HYGSVNEV  314 (338)
T ss_pred             -------CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc----CC------cceeEEEe
Confidence                   22233333332    223  345556669999999999999998875444332    22      23346789


Q ss_pred             ccccCCCCcceeEeec
Q 009373          496 EMSSKGGRTDQCSVAA  511 (536)
Q Consensus       496 ~~~~~g~~~~~~~~~~  511 (536)
                      +|+|.-..|.+|+.+-
T Consensus       315 ~Fhp~e~iils~~sdk  330 (338)
T KOG0265|consen  315 DFHPTEPIILSCSSDK  330 (338)
T ss_pred             eecCCCcEEEEeccCc
Confidence            9999999999998754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=9.9e-31  Score=253.89  Aligned_cols=296  Identities=17%  Similarity=0.195  Sum_probs=209.5

Q ss_pred             cCCccceeeee-CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE-EEEecCC------------
Q 009373          145 FLGRYSIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI-RAVAADK------------  210 (536)
Q Consensus       145 ~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v-~~~~~~~------------  210 (536)
                      +..-+..+.+. +|.++|.+|.|++||+|||+|+.||.|+||.+...+....-.+....+ ..+...+            
T Consensus       253 lsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~  332 (712)
T KOG0283|consen  253 LSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKI  332 (712)
T ss_pred             ceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccc
Confidence            34455677788 999999999999999999999999999999986533211111100000 0000000            


Q ss_pred             --C--EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceE
Q 009373          211 --K--LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKC  285 (536)
Q Consensus       211 --~--~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~  285 (536)
                        .  ..-.+.....+ +.+         .....-...++..+.||.+.|.++.| ..++|+++|.|+||++|++...+|
T Consensus       333 ~~~~s~~~~~~~s~~~-~~p---------~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C  402 (712)
T KOG0283|consen  333 SSRTSSSRKGSQSPCV-LLP---------LKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC  402 (712)
T ss_pred             cccccccccccCCccc-cCC---------CccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcce
Confidence              0  01111111111 111         01111224577789999999999999 788999999999999999999999


Q ss_pred             eEeeeccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          286 LKVLRHSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       286 ~~~~~~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                      +..|.|.+.|+|++   -|.+++++|+ |+.|+||++...+.+.-..  ...-|++++|.|+|++.++|+.+|.+++|+.
T Consensus       403 L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t  480 (712)
T KOG0283|consen  403 LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDT  480 (712)
T ss_pred             eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence            99999999999999   4788999999 9999999999887766553  5588999999999999999999999999999


Q ss_pred             ccCcccccccee--ee-ccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee
Q 009373          362 INDCTEANVLLV--AT-WIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  435 (536)
Q Consensus       362 ~~~~~~~~~~~~--~~-~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (536)
                      ...+........  .. -..|. .|+++.|.|   +.|++.+.|..|+|+|.++.....+...               .-
T Consensus       481 ~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG---------------~~  544 (712)
T KOG0283|consen  481 EGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG---------------FR  544 (712)
T ss_pred             cCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc---------------cc
Confidence            877432111110  00 01233 899999975   6788899999999999965322211100               00


Q ss_pred             ccccccEEEEEecCCEEEEecCCCeEEEEeCCc
Q 009373          436 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       436 ~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~  468 (536)
                      .++.-.-.++..+|.+|++|++|..|++|+.+.
T Consensus       545 n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  545 NTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            112223345666888999999999999999854

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=1e-31  Score=244.09  Aligned_cols=239  Identities=20%  Similarity=0.292  Sum_probs=206.1

Q ss_pred             ccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-CCceEEEEecCC-CEEEEEeCCCcEEEE
Q 009373          148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADK-KLLVAGGTDGFIHCW  225 (536)
Q Consensus       148 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~-~~l~sg~~dg~i~vw  225 (536)
                      +..++++.||..+|..++|+++|..++|+|.|++|++||+++|+++..+.. ....+..+.|++ +.+++|+.|+.|+.|
T Consensus       248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w  327 (503)
T KOG0282|consen  248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQW  327 (503)
T ss_pred             cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence            346899999999999999999999999999999999999999999998854 445667777887 899999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~  299 (536)
                      |+++++             .+..+..|-+.|..+.|  ++.++++.+.|++++||+.+.+-.++.+.    |..+...+.
T Consensus       328 DiRs~k-------------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~  394 (503)
T KOG0282|consen  328 DIRSGK-------------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH  394 (503)
T ss_pred             eccchH-------------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecC
Confidence            998864             56667789999999999  88999999999999999999887766554    666767777


Q ss_pred             ecCCEEEEec-CCcEEEEeCCCCcE---EEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          300 PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      |++.++++-+ |+.|.+|.+...-.   ...+ .+|..  --..+.|||||.+|++|+.||.+.+||.++.      +.+
T Consensus       395 P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f-eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~------kl~  467 (503)
T KOG0282|consen  395 PNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRF-EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT------KLV  467 (503)
T ss_pred             CCCCeehhhccCceEEEEecccccccCHhhhh-cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh------hhh
Confidence            9999999988 99999998654311   1222 35643  4556889999999999999999999999998      788


Q ss_pred             eeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEE
Q 009373          374 ATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLID  406 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd  406 (536)
                      ..+.+|.+++..+.|+|   ..+++++.||.|++||
T Consensus       468 ~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  468 SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            89999999999999987   7999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2.5e-30  Score=250.51  Aligned_cols=241  Identities=22%  Similarity=0.335  Sum_probs=213.7

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      .++..+..|..++|+|....++++-..|.|++||..-+.++..+..|.++|..+.  |.+.++++|+.|..|+||+..+ 
T Consensus         4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-   82 (1202)
T KOG0292|consen    4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-   82 (1202)
T ss_pred             hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-
Confidence            4556678899999999999999999999999999999999999999999997665  8899999999999999999865 


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l  305 (536)
                                  ..+..++.||-+.|..+.|+.  ..++++|+|.+|+||+..+.+++..+. |...|.|.+  |....+
T Consensus        83 ------------rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI  150 (1202)
T KOG0292|consen   83 ------------RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI  150 (1202)
T ss_pred             ------------ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence                        458889999999999999954  579999999999999999999999998 999999987  778899


Q ss_pred             EEec-CCcEEEEeCCCC----------------------------cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373          306 ASTS-GSDVYIWDTNSG----------------------------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  356 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~----------------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i  356 (536)
                      ++++ |.+|+|||+..-                            ..+..+..||...|+-++|+|.-.++++|+.|..|
T Consensus       151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV  230 (1202)
T KOG0292|consen  151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV  230 (1202)
T ss_pred             EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence            9999 999999998531                            11233346899999999999999999999999999


Q ss_pred             EEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ++|.+...+.    -.+-+..+|.+.|.++-|+|  +++++.|.|++|+|||+...
T Consensus       231 KlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR  282 (1202)
T KOG0292|consen  231 KLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR  282 (1202)
T ss_pred             eEEEeccccc----eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence            9999876532    35677889999999999999  89999999999999999764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=4.7e-30  Score=226.42  Aligned_cols=262  Identities=21%  Similarity=0.333  Sum_probs=216.3

Q ss_pred             hccccCCccceeeeeCccccEEEEEEecCCC---EEEEEeCCCcEEEEECCCCce----eeeeCCCCceEEEEe--cCCC
Q 009373          141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAK---LLFTSGYDSIVRMWHLEDGFS----IASSKPLGCTIRAVA--ADKK  211 (536)
Q Consensus       141 ~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~---~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~--~~~~  211 (536)
                      |.+..+|+. ...+.||+++|.+++|.-...   .|+++|.|.++++|..+.+..    +....+|...|-+++  +++.
T Consensus       128 riWd~~Gk~-~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt  206 (423)
T KOG0313|consen  128 RIWDLKGKS-IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT  206 (423)
T ss_pred             EEEecCCce-EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC
Confidence            445555654 788999999999888865443   599999999999999987754    333468999998887  8899


Q ss_pred             EEEEEeCCCcEEEEEcccCcccee------------cccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEE
Q 009373          212 LLVAGGTDGFIHCWRAVEVLPHLF------------DISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       212 ~l~sg~~dg~i~vwd~~~~~~~~~------------~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iw  278 (536)
                      .+++|+.|.++++|+.++.....+            .........+...+.||..+|.++.| +...+++++.|.+|+.|
T Consensus       207 r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~W  286 (423)
T KOG0313|consen  207 RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVW  286 (423)
T ss_pred             eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEE
Confidence            999999999999999443221111            11122345678889999999999999 88899999999999999


Q ss_pred             eCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCc--EEEEEccccccceEEEEEeCCCC-EEEEEcC
Q 009373          279 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGD-FLFTGGE  352 (536)
Q Consensus       279 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~  352 (536)
                      |+.++..+..+......++++  +..++|++|+ |..+++||.+++.  .+..-..+|.+.|.++.|+|... .|++|+.
T Consensus       287 Dletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~  366 (423)
T KOG0313|consen  287 DLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY  366 (423)
T ss_pred             EeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEec
Confidence            999999999999888899988  7788899888 8999999999863  33333358999999999999664 6889999


Q ss_pred             CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECC
Q 009373          353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~  408 (536)
                      |+++++||+++..     .++..+.+|...|.++.|.. ..+++||.|.+|+++.-.
T Consensus       367 D~t~klWDvRS~k-----~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  367 DNTVKLWDVRSTK-----APLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCeEEEEEeccCC-----CcceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence            9999999999983     38899999999999999975 699999999999998754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.7e-30  Score=215.29  Aligned_cols=269  Identities=18%  Similarity=0.244  Sum_probs=211.6

Q ss_pred             EEEEEecC-CCEEEEEe-------CCCcEEEEECCCCceeeeeCC--CCceEEEEe---cCCCEEEEEeCCCcEEEEEcc
Q 009373          162 LTVFVLAS-AKLLFTSG-------YDSIVRMWHLEDGFSIASSKP--LGCTIRAVA---ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       162 ~~v~~~~~-~~~l~sgs-------~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      +++.|+|- .++||.+.       ..|.+.|-++..++-+..+..  -...+..+.   ...+.+++++.||++++||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            46788883 23333322       368899999875544443322  223444444   346789999999999999964


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ec
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH  301 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~  301 (536)
                      ..            ..++..++.|...|.++.|   +...++++|.|++|++|+...++.+.++. |...|+...   ..
T Consensus        92 ~~------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~  159 (311)
T KOG0277|consen   92 MP------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI  159 (311)
T ss_pred             CC------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC
Confidence            33            3477888999999999999   55778889999999999999999999988 888888877   35


Q ss_pred             CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      ++++++++ |+.+++||++..-....+. .|..+|.++.|+. +...|+||+.|+.|++||+++-.     .++..+.+|
T Consensus       160 ~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh  233 (311)
T KOG0277|consen  160 PNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGH  233 (311)
T ss_pred             CCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-----ccceeecCC
Confidence            77888888 9999999998754444454 6999999999987 55789999999999999999885     568888999


Q ss_pred             CCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec---CCEEE
Q 009373          380 TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIV  453 (536)
Q Consensus       380 ~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~  453 (536)
                      .-.|..+.|+|   ..|++++.|-++++||....                  .........|+.-+..++++   +.++|
T Consensus       234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~------------------ds~~e~~~~HtEFv~g~Dws~~~~~~vA  295 (311)
T KOG0277|consen  234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ------------------DSAIETVDHHTEFVCGLDWSLFDPGQVA  295 (311)
T ss_pred             ceEEEEEecCcchhhHhhhccccceEEecccccc------------------hhhhhhhhccceEEeccccccccCceee
Confidence            99999999998   69999999999999998753                  22233345677777777765   45999


Q ss_pred             EecCCCeEEEEeC
Q 009373          454 CGGEEGIVRIWNF  466 (536)
Q Consensus       454 sg~~Dg~i~vW~~  466 (536)
                      +.|.|+.++||+.
T Consensus       296 s~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  296 STGWDELLYVWNP  308 (311)
T ss_pred             ecccccceeeecc
Confidence            9999999999984

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.5e-30  Score=238.55  Aligned_cols=246  Identities=16%  Similarity=0.184  Sum_probs=219.5

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEe
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGG  217 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~  217 (536)
                      ...|+...+..++.+.-..-+|++..|-+..+.+++|+.|..|+||+..+++.+..+.+|...+.++.  |...+++++|
T Consensus        37 V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS  116 (794)
T KOG0276|consen   37 VQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS  116 (794)
T ss_pred             eEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence            45566667778899999999999999999999999999999999999999999999999999998876  8889999999


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccc
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD  293 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~  293 (536)
                      .|-+|++||++.+            ..+..++.||+..|.+++|   |.+.+++++-|++|++|.+.+..+..++. |..
T Consensus       117 DDm~iKlW~we~~------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek  184 (794)
T KOG0276|consen  117 DDMTIKLWDWENE------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK  184 (794)
T ss_pred             CccEEEEeeccCc------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecccc
Confidence            9999999999765            6688899999999999999   66899999999999999999999999988 999


Q ss_pred             cEEEEe----ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          294 WVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       294 ~v~~~~----~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                      .|+|+.    .+..++++|+ |.+++|||.++..+++++. ||...|..+.|+|.-.++++|++||+++||+-.+-    
T Consensus       185 GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty----  259 (794)
T KOG0276|consen  185 GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY----  259 (794)
T ss_pred             CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEEEecCcce----
Confidence            999998    3455999998 7899999999999999996 79999999999999999999999999999998887    


Q ss_pred             ccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEE
Q 009373          369 NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSL  404 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~v  404 (536)
                        +...++.-.-..|+|++-.+  +.++.|..+|.|.+
T Consensus       260 --~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  260 --KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             --ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence              45555666678899999753  67777777776654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.2e-29  Score=210.97  Aligned_cols=237  Identities=24%  Similarity=0.358  Sum_probs=200.4

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccC
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      .+|+..|++++|+|.|++|++||.|.++.||.-..+  +++.++.+|...|-+++  ++|++||+++.|..|-||.+..+
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            479999999999999999999999999999997654  68899999998887665  89999999999999999998754


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCC---CceEeEeee-ccccEEEEe--ecC
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRA---LLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~---~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                                ....+...+.+|+..|..+.|++  +.|+++|.|.+|++|+-.   ...+.+++. |...|.+++  +.|
T Consensus       138 ----------dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G  207 (312)
T KOG0645|consen  138 ----------DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG  207 (312)
T ss_pred             ----------CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence                      34567888999999999999977  899999999999999866   446778887 777888886  778


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee-eccCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA-TWIPHT  380 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~  380 (536)
                      ..+++++ |++++||-..+     .+...|...++.+.|.  ...|++++.|+.|++|........+....+. .-..|.
T Consensus       208 ~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe  280 (312)
T KOG0645|consen  208 SRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE  280 (312)
T ss_pred             ceEEEecCCcceEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc
Confidence            8999998 89999998663     2334588899999998  5679999999999999877543333344333 445799


Q ss_pred             CCeEEEEEcC---CeEEEEeCCCcEEEEECC
Q 009373          381 GPVNSLAFEF---PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       381 ~~v~~l~~~~---~~l~s~s~dg~i~vwd~~  408 (536)
                      ..|++++|+|   ++|++|+.||.|++|.+.
T Consensus       281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  281 VDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            9999999987   799999999999999874

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.9e-31  Score=234.26  Aligned_cols=269  Identities=17%  Similarity=0.247  Sum_probs=215.2

Q ss_pred             HhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 009373          111 RWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG  190 (536)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~  190 (536)
                      .|+.....+++++.+....+|+..+..+ +        ...+++.||..+|.-+.|+||.++|++|+.|..+.+||+.+|
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d~~-~--------kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYDVH-F--------KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecCcc-e--------eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            4444444456666677777888877664 1        246799999999999999999999999999999999999999


Q ss_pred             ceeeeeCC-CC--ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEEEE--eCC
Q 009373          191 FSIASSKP-LG--CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL--DLT  264 (536)
Q Consensus       191 ~~~~~~~~-~~--~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~  264 (536)
                      .....+.. +.  ....++.|||..+++|+.|+++..||+....              .....+- ...|.+++.  ||+
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--------------~~~W~gvr~~~v~dlait~Dgk  367 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--------------LGNWEGVRDPKVHDLAITYDGK  367 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--------------hhcccccccceeEEEEEcCCCc
Confidence            88776643 23  3445566999999999999999999987642              1112222 245778887  999


Q ss_pred             EEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccce--EEEE
Q 009373          265 RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNT--KSLA  339 (536)
Q Consensus       265 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i--~~l~  339 (536)
                      ++++.+.|..|++++.++......+....+|++++  .+++++.+.- +..+++||++..+.++.+. ||...-  ..-+
T Consensus       368 ~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSC  446 (519)
T KOG0293|consen  368 YVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSC  446 (519)
T ss_pred             EEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEec
Confidence            99999999999999999887777777777788776  6777777666 8999999999888888876 566542  2333


Q ss_pred             EeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCc
Q 009373          340 RSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       340 ~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  409 (536)
                      |.- +..++++|++|+.|+||+..++      +++..+.||...|++++|+|   ..+|+||.||+|+||....
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sg------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISG------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCC------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            432 4479999999999999999999      89999999999999999987   6999999999999998764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=8.8e-31  Score=229.58  Aligned_cols=281  Identities=16%  Similarity=0.236  Sum_probs=227.2

Q ss_pred             cceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373          149 YSIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      .-+..|.||.++|.|++=+|.. ..++||+.||.|+|||+....++.++.+|.+.|..++.+...+++++.|.+|+.|.+
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeec
Confidence            3467889999999999999976 789999999999999999999999999999999999988799999999999999987


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ec-
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PH-  301 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~-  301 (536)
                      +..              +..++.+ .+.+..+.-  .++.++||+.  .|.|||.....++..+. ..+.|.++.  |. 
T Consensus       137 ~~~--------------p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE  199 (433)
T KOG0268|consen  137 DGP--------------PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVE  199 (433)
T ss_pred             cCC--------------cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCc
Confidence            542              2333322 344555554  4567888875  59999999888888888 667788887  33 


Q ss_pred             CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373          302 DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      ...|+++. |++|.+||++++.++..+.  .....+.++|+|.+-.+++|++|..++.||++...     .++....+|.
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~-----~p~~v~~dhv  272 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS-----RPLNVHKDHV  272 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhc-----ccchhhcccc
Confidence            34566664 9999999999999988874  56677899999988889999999999999999875     6788889999


Q ss_pred             CCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCC--EEEEe
Q 009373          381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGAD--RIVCG  455 (536)
Q Consensus       381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~l~sg  455 (536)
                      +.|.+++|+|  .-+++||.|.+|+||.++.+....                   +.+. .-..|+++.++.+  +++||
T Consensus       273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd-------------------iYhtkRMq~V~~Vk~S~Dskyi~SG  333 (433)
T KOG0268|consen  273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD-------------------IYHTKRMQHVFCVKYSMDSKYIISG  333 (433)
T ss_pred             eeEEEeccCCCcchhccccccceEEEeecCCCcchh-------------------hhhHhhhheeeEEEEeccccEEEec
Confidence            9999999997  789999999999999998642110                   0111 1134667666554  99999


Q ss_pred             cCCCeEEEEeCCchhhH
Q 009373          456 GEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       456 ~~Dg~i~vW~~~~~~~~  472 (536)
                      |+|+.|++|.....+.+
T Consensus       334 Sdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  334 SDDGNVRLWKAKASEKL  350 (433)
T ss_pred             CCCcceeeeecchhhhc
Confidence            99999999997754443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=250.99  Aligned_cols=239  Identities=28%  Similarity=0.431  Sum_probs=207.9

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~-~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ..+.+.+|...|.+++|+|++.++++|+.|++|+|||+ ..+..++++.+|...|.+++  |+++++++|+.|++|++||
T Consensus       195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence            35677999999999999999999999999999999999 56689999999999988776  8889999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce--EeEeee-ccc--cEEEEe
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK--CLKVLR-HSD--WVYGLA  299 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~-~~~--~v~~~~  299 (536)
                      ++++.             +...+.+|.+.|++++|  ++..|++++.|+.|++||+.++.  +...+. +..  .++++.
T Consensus       275 ~~~~~-------------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  341 (456)
T KOG0266|consen  275 VRTGE-------------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ  341 (456)
T ss_pred             ccCCe-------------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence            98753             78889999999999999  88999999999999999999999  455555 222  466665


Q ss_pred             --ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccc---eEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN---TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                        +++.+++++. |+.+++||+..+..+..+. +|...   +.+...++.+.++++|+.|+.|++||+.+.      ..+
T Consensus       342 fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~------~~~  414 (456)
T KOG0266|consen  342 FSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG------GIL  414 (456)
T ss_pred             ECCCCcEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc------chh
Confidence              8999999999 7899999999999998886 46553   444556788999999999999999999987      678


Q ss_pred             eeccCC-CCCeEEEEEcC--CeEEEEe--CCCcEEEEECC
Q 009373          374 ATWIPH-TGPVNSLAFEF--PWLVSAA--GDGKLSLIDVR  408 (536)
Q Consensus       374 ~~~~~h-~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~  408 (536)
                      ..+.+| ...+..+++++  +++++++  .|+.+++|...
T Consensus       415 ~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  415 QRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            888999 89999999986  7888888  68999999754

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1.1e-30  Score=217.67  Aligned_cols=240  Identities=22%  Similarity=0.294  Sum_probs=214.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      +.++.||.+.|.+..++.+....|+++.|-+.+|||.-+|..+.++. .|-....+|+.|.++|++|+.+..++|+|++.
T Consensus        52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~  131 (334)
T KOG0278|consen   52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR  131 (334)
T ss_pred             EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence            67999999999999999888899999999999999999999988874 35556677788999999999999999999976


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEE
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV  305 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l  305 (536)
                      ..            .+...+.+|.+.|..+.|  ..+.+++.+.|++||+||.+++..++.+.....|+++.  ++|+++
T Consensus       132 p~------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~il  199 (334)
T KOG0278|consen  132 PK------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRIL  199 (334)
T ss_pred             CC------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEE
Confidence            53            356668899999999999  66788999999999999999999999999888888876  899999


Q ss_pred             EEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec-cCCCCCeE
Q 009373          306 ASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPHTGPVN  384 (536)
Q Consensus       306 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~  384 (536)
                      ..+..+.|.+||..+...+..+.  -...|.+...+|+...+++|++|..++.||..++      ..+..+ .+|.++|.
T Consensus       200 Tia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tg------eEi~~~nkgh~gpVh  271 (334)
T KOG0278|consen  200 TIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTG------EEIGSYNKGHFGPVH  271 (334)
T ss_pred             EEecCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCC------ceeeecccCCCCceE
Confidence            99999999999999999998875  5667899999999999999999999999999999      445554 89999999


Q ss_pred             EEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          385 SLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       385 ~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      |+.|+|  ...++||.||+|++|.....
T Consensus       272 cVrFSPdGE~yAsGSEDGTirlWQt~~~  299 (334)
T KOG0278|consen  272 CVRFSPDGELYASGSEDGTIRLWQTTPG  299 (334)
T ss_pred             EEEECCCCceeeccCCCceEEEEEecCC
Confidence            999997  68889999999999998654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=3.3e-30  Score=229.75  Aligned_cols=281  Identities=19%  Similarity=0.258  Sum_probs=228.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ...+..|.+.|..+.|-++...|++|+.|..|++|++..++  .+.++.+..+.+.++.  +++..+++++.|+.+++|+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            45778899999999999998999999999999999997766  6677788878887776  7789999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCE
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTT  304 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  304 (536)
                      +...             ....++.+|++.|+++.|  ....+++|+.|.+|++||+....|.+++-....+..|......
T Consensus       248 vd~~-------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~  314 (459)
T KOG0288|consen  248 VDSL-------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISD  314 (459)
T ss_pred             ccch-------------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEeccee
Confidence            9664             366788999999999999  3444999999999999999999999988877888888877888


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      ++++. |++|++||.++..+...+.  -.+.|+++..+++|..|.+++.|.++.++|+++......+.......+  ...
T Consensus       315 ~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~a--sDw  390 (459)
T KOG0288|consen  315 VISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCA--SDW  390 (459)
T ss_pred             eeecccccceEEEeccCCceeeEee--cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccc--ccc
Confidence            88888 9999999999999999885  455999999999999999999999999999999843211111111122  337


Q ss_pred             EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCC
Q 009373          384 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEG  459 (536)
Q Consensus       384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg  459 (536)
                      +.+.|+|  .|+++||.||.|+||++.+++.......                 .+....|++++|  +|..|++++.++
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-----------------s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-----------------STSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc-----------------CCCCcceEEEEEcCCCchhhcccCCc
Confidence            8899987  7999999999999999988533221111                 111113555555  556999999999


Q ss_pred             eEEEEe
Q 009373          460 IVRIWN  465 (536)
Q Consensus       460 ~i~vW~  465 (536)
                      .+.+|.
T Consensus       454 ~v~lW~  459 (459)
T KOG0288|consen  454 AVTLWT  459 (459)
T ss_pred             ceEecC
Confidence            999993

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.6e-28  Score=205.66  Aligned_cols=290  Identities=20%  Similarity=0.281  Sum_probs=221.9

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      -.++||..+++.+.|+.+|.+|.+++.|.+..||-..+|+.+.++.+|.+.|+++.  .+.+.+++|+.|.++++||+++
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence            36789999999999999999999999999999999999999999999999999987  6678999999999999999998


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-----CCeEEEEeCC-------CceEeEeee-cccc
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRA-------LLKCLKVLR-HSDW  294 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~-~~~~  294 (536)
                      |+             .+. ......+|..+.|  ++++++....     .+.|.++|++       ..++...+. +...
T Consensus        84 Gk-------------~la-~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk  149 (327)
T KOG0643|consen   84 GK-------------QLA-TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK  149 (327)
T ss_pred             Cc-------------EEE-EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence            84             222 2345678888888  6666665543     3679999987       344455554 5566


Q ss_pred             EEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373          295 VYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       295 v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                      ++..-  |-++++++|. +|.|..||+++|+.+......|...|+.+.++|+..++++|+.|.+-++||+++-      .
T Consensus       150 it~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl------~  223 (327)
T KOG0643|consen  150 ITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL------E  223 (327)
T ss_pred             eeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce------e
Confidence            66554  8899999998 8999999999997776665679999999999999999999999999999999987      4


Q ss_pred             eeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE--eeCCCeeeeccccccEEEEEe
Q 009373          372 LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI--EVEPPQRMLHGFECNLLSVDI  447 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~  447 (536)
                      .+.++. -..||++.+++|  ++++.|+....-   |+.+....    .++...++.  -+.+......||-+++.++++
T Consensus       224 v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r----~GKFEArFyh~i~eEEigrvkGHFGPINsvAf  295 (327)
T KOG0643|consen  224 VLKTYT-TERPVNTAAISPLLDHVILGGGQEAM---DVTTTSTR----AGKFEARFYHLIFEEEIGRVKGHFGPINSVAF  295 (327)
T ss_pred             eEEEee-ecccccceecccccceEEecCCceee---eeeeeccc----ccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence            555543 466999999998  667666654322   22221100    011000000  012223345788888777776


Q ss_pred             cCC--EEEEecCCCeEEEEeCCch
Q 009373          448 GAD--RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       448 ~~~--~l~sg~~Dg~i~vW~~~~~  469 (536)
                      +|+  ..+|||+||.||+.-++..
T Consensus       296 hPdGksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  296 HPDGKSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             CCCCcccccCCCCceEEEEEeccc
Confidence            554  9999999999999988754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.6e-27  Score=204.20  Aligned_cols=281  Identities=16%  Similarity=0.208  Sum_probs=228.5

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC--CceEEEEecCCCEEEEEeC--CCcEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGT--DGFIHCWR  226 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~--dg~i~vwd  226 (536)
                      .+.+..-.+.|.++.|+++|.+|++++.|.+++|||..+++.++++..+  +..+.++....+.++.++.  |.+|+.-+
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            3455566788999999999999999999999999999999999988665  6677788766666776666  88999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCC
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDT  303 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~  303 (536)
                      +.+.             +.++.+.||...|.+|+.  -++.+++++.|++|++||++..++...+. ...++.++.|.|-
T Consensus        87 l~dN-------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GL  153 (311)
T KOG1446|consen   87 LHDN-------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGL  153 (311)
T ss_pred             eecC-------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCc
Confidence            9764             478889999999999999  45899999999999999999999988887 6678888899999


Q ss_pred             EEEEecC-CcEEEEeCCCC--cEEEEEc--cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          304 TVASTSG-SDVYIWDTNSG--CLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       304 ~l~~~~d-~~i~i~d~~~~--~~~~~~~--~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      ++|++.+ ..|++||++.-  .+..++.  .+...+.+.+.|+|+|++++.++..+.+++.|.-++      ....++.+
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G------~~~~tfs~  227 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG------TVKSTFSG  227 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC------cEeeeEee
Confidence            9999995 49999999874  3444443  234668899999999999999999999999999888      45555555


Q ss_pred             CCCCe---EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCCEE
Q 009373          379 HTGPV---NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRI  452 (536)
Q Consensus       379 h~~~v---~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l  452 (536)
                      +...-   .+..|.|  .++++|+.||+|.+|+++++.+..                   .+.+ +...+.++.+++.+.
T Consensus       228 ~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~-------------------~~~~~~~~~~~~~~fnP~~~  288 (311)
T KOG1446|consen  228 YPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA-------------------VLRGPNGGPVSCVRFNPRYA  288 (311)
T ss_pred             ccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee-------------------EecCCCCCCccccccCCcee
Confidence            54322   4566766  799999999999999998853332                   2233 567777888999977


Q ss_pred             EEecCCCeEEEEeCCch
Q 009373          453 VCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       453 ~sg~~Dg~i~vW~~~~~  469 (536)
                      .-++.+..+-+|=....
T Consensus       289 mf~sa~s~l~fw~p~~~  305 (311)
T KOG1446|consen  289 MFVSASSNLVFWLPDED  305 (311)
T ss_pred             eeeecCceEEEEecccc
Confidence            77777888999977644

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.3e-28  Score=209.62  Aligned_cols=242  Identities=18%  Similarity=0.280  Sum_probs=192.8

Q ss_pred             eCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCC-Ccee-eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373          155 YGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED-GFSI-ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       155 ~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      ....+.|.+++|+| ...++++||.||+||+|+++. |..+ +....|.+++++++  .+|..+++|+.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            35678999999999 566777999999999999987 3333 34567888888776  7899999999999999999987


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE-e-C--CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEE
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-L--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV  305 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l  305 (536)
                      +              ....+..|.++|.++.| . .  ..|+|||.|++|+.||.+....+.++..++.++++.-...++
T Consensus       104 ~--------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~  169 (347)
T KOG0647|consen  104 G--------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMA  169 (347)
T ss_pred             C--------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCcee
Confidence            6              45667789999999999 2 2  468999999999999999999999999999999999544444


Q ss_pred             -EEecCCcEEEEeCCCCcE-EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcc--ccccceeeecc---C
Q 009373          306 -ASTSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT--EANVLLVATWI---P  378 (536)
Q Consensus       306 -~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~~~~~~---~  378 (536)
                       ++..+..|.+|+++.+.. .........-.++|++..++.+..+.|+-+|.+.|..+..+..  ...+++.+.-.   +
T Consensus       170 vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  170 VVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             EEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence             455599999999977643 2333334556789999999999889999999999999988632  22223333211   1


Q ss_pred             CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .-..|++|+|+|  ..|+|++.||++.+||-...
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhh
Confidence            124688999998  79999999999999997754

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.4e-28  Score=205.26  Aligned_cols=277  Identities=18%  Similarity=0.169  Sum_probs=223.6

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee--eCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd  226 (536)
                      +.+++|.+.|.+++|+.+|..|++|+.|+++++|+++.......  ..+|...|-.++   +....+++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            57789999999999999999999999999999999988755443  366776665444   5678999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCC
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDT  303 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~  303 (536)
                      ++.++             +........+.+.-... ++++++.++.|..|.+.|.++.+.....+....+.-+.  .++.
T Consensus        94 ~r~~k-------------~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   94 IRSGK-------------CTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSND  160 (313)
T ss_pred             eccCc-------------EEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCC
Confidence            98764             44444333344433333 88999999999999999999999888887666676666  4455


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      +++..+ .|.|.|.....-+++..+. +|.....|+.|+|+|++||+|+.|-.+.+||+...      .+++.+..+.-+
T Consensus       161 ~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL------iC~R~isRldwp  233 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL------ICERCISRLDWP  233 (313)
T ss_pred             EEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHh------hhheeeccccCc
Confidence            555555 6999999999999999996 79999999999999999999999999999999887      889999999999


Q ss_pred             eEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCC
Q 009373          383 VNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEE  458 (536)
Q Consensus       383 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~D  458 (536)
                      |..|.|+  +.+|++||.|..|-|=+++++.+.+..                    .+..+.+.++++|+  +||-++.|
T Consensus       234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI--------------------~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI--------------------PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eEEEEeccCcceeeccCccceEEeEecccCCeEEEe--------------------eccCCceeEEecCCCceeeEEecC
Confidence            9999996  689999999999999999987555432                    23455667777776  55544443


Q ss_pred             ---------CeEEEEeCCc
Q 009373          459 ---------GIVRIWNFSQ  468 (536)
Q Consensus       459 ---------g~i~vW~~~~  468 (536)
                               |.|++|-+++
T Consensus       294 k~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  294 KDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             CCCccccccceeEEecCCC
Confidence                     5777776653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-28  Score=211.00  Aligned_cols=298  Identities=19%  Similarity=0.308  Sum_probs=237.2

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      .++.+.||.++|..++.....+.+.+++.|.+.+||.+++|.++.++.+|.+.|.++.  +.+.++++++.|++.+||..
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence            4678889999999999988788999999999999999999999999999999988765  78889999999999999972


Q ss_pred             c----cCcc-----------------ceecc------cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373          228 V----EVLP-----------------HLFDI------SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       228 ~----~~~~-----------------~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw  278 (536)
                      .    ....                 ...+.      .+.....++..+.+|.+.|.+..|  .++.+++++.|++..+|
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw  299 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW  299 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence            1    1110                 00011      111223467788899999999999  77899999999999999


Q ss_pred             eCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC
Q 009373          279 DRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG  354 (536)
Q Consensus       279 d~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg  354 (536)
                      |+++++.+..+. |....+-++  |..+++++++ |.+.++||.+..-.-.....||...|+++.|..+ ..+++|+.|.
T Consensus       300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDr  378 (481)
T KOG0300|consen  300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDR  378 (481)
T ss_pred             eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCc
Confidence            999999999998 888877766  7888888888 9999999999654433333589999999999876 4589999999


Q ss_pred             cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373          355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  432 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (536)
                      +|+|||+++..     .++.++. -.++++.++.+.  ..++.--.+..|++||+.......               -+.
T Consensus       379 TvKvWdLrNMR-----splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR---------------lPr  437 (481)
T KOG0300|consen  379 TVKVWDLRNMR-----SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR---------------LPR  437 (481)
T ss_pred             eEEEeeecccc-----Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcccc---------------CCc
Confidence            99999999874     3444443 466888888864  567777778899999997532211               111


Q ss_pred             eeeccccccEEEEEecCC----EEEEecCCCeEEEEeCCch
Q 009373          433 RMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       433 ~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~i~vW~~~~~  469 (536)
                      ..-.+|..-|.+.++..+    -|.++|.|..+.=|++...
T Consensus       438 tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  438 TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             ccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            234678888888888765    6889999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=1e-27  Score=255.48  Aligned_cols=308  Identities=17%  Similarity=0.239  Sum_probs=223.6

Q ss_pred             CCcEEEEECCCCceeee-----eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373          179 DSIVRMWHLEDGFSIAS-----SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  251 (536)
Q Consensus       179 dg~v~iwd~~~~~~~~~-----~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  251 (536)
                      +|.+++|+..+......     +..|...|.++.  ++++++++|+.|+.|++|++......     ......+...+ .
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----~~~~~~~~~~~-~  530 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----GRDIHYPVVEL-A  530 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----ccccccceEEe-c
Confidence            67889999876654433     334677776654  88999999999999999997542100     00001122223 3


Q ss_pred             CccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcE
Q 009373          252 HEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL  323 (536)
Q Consensus       252 h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~  323 (536)
                      +...|.+++|   ++.+|++++.||+|++||+.+++.+..+. |...|++++  + ++.+|++++ |+.|++||++++..
T Consensus       531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~  610 (793)
T PLN00181        531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS  610 (793)
T ss_pred             ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence            3567899999   35789999999999999999998888876 999999988  3 577888888 89999999999998


Q ss_pred             EEEEccccccceEEEEEe-CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-CCeEEEEeCCCc
Q 009373          324 LTVVNGAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGK  401 (536)
Q Consensus       324 ~~~~~~~~~~~i~~l~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~  401 (536)
                      +..+.  +...+.++.|+ ++|.+|++|+.||.|++||++...     .++..+.+|...|.++.|. +.+|++++.|++
T Consensus       611 ~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-----~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~  683 (793)
T PLN00181        611 IGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-----LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNT  683 (793)
T ss_pred             EEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-----ccceEecCCCCCEEEEEEeCCCEEEEEECCCE
Confidence            88875  34678999995 578999999999999999998762     2456678999999999995 589999999999


Q ss_pred             EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE--EecCCEEEEecCCCeEEEEeCCchhhHHHHHH--
Q 009373          402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV--DIGADRIVCGGEEGIVRIWNFSQAFEIERRAR--  477 (536)
Q Consensus       402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~--  477 (536)
                      |++||++.......             ..+...+.+|...+..+  ++++.+|++|+.||.|++|+...+..+.....  
T Consensus       684 ikiWd~~~~~~~~~-------------~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~  750 (793)
T PLN00181        684 LKLWDLSMSISGIN-------------ETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKT  750 (793)
T ss_pred             EEEEeCCCCccccC-------------CcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEeccc
Confidence            99999975321000             12234456777655444  45566999999999999999876533211100  


Q ss_pred             --hhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373          478 --ALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       478 --~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  513 (536)
                        ...+.. .........+++|+|+|..+++++.+.+-
T Consensus       751 ~~~~~~~~-~~~~~~~V~~v~ws~~~~~lva~~~dG~I  787 (793)
T PLN00181        751 IDPVSGLE-VDDASQFISSVCWRGQSSTLVAANSTGNI  787 (793)
T ss_pred             CCcccccc-cCCCCcEEEEEEEcCCCCeEEEecCCCcE
Confidence              000000 01122346789999999999988765543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=5.8e-29  Score=207.56  Aligned_cols=281  Identities=18%  Similarity=0.234  Sum_probs=228.5

Q ss_pred             eeeeeCccccEEEEEEec---CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecC--CCEEEEEeCCCcEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLA---SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAAD--KKLLVAGGTDGFIHCW  225 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~---~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~dg~i~vw  225 (536)
                      ..+-.||+.+|..++|+|   +|-+|++++.|+.=.+-+-++|.-+.++.+|.+.|+....+  ...-++++.|-+-++|
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            457789999999999986   78899999999999999999999999999999999887744  4467889999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeee-ccccEEEEe--
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~--  299 (536)
                      |.-++.             .+..+ .|..-|.+++|  |.++|++|+.++.++|||++..+. ...+. |.+.|..+-  
T Consensus        87 ~a~tgd-------------elhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc  152 (334)
T KOG0278|consen   87 DAVTGD-------------ELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWC  152 (334)
T ss_pred             hhhhhh-------------hhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEe
Confidence            988774             23333 68889999999  778999999999999999987653 33344 888888776  


Q ss_pred             ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      ...+.+++++ |++|++||.+++..+.++.  ...+|+++.++++|.+|.++ ..+.|.+||..+-      ..+..+. 
T Consensus       153 ~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf------~~lKs~k-  222 (334)
T KOG0278|consen  153 HEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF------GLLKSYK-  222 (334)
T ss_pred             ccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccc------cceeecc-
Confidence            4555666655 8999999999999999985  67789999999999977655 5677999998877      3443332 


Q ss_pred             CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEE
Q 009373          379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVC  454 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s  454 (536)
                      -...|.+...+|  ..+++|+.|+.++.||..++.....                  ...+|.++|.++.|+++  ..++
T Consensus       223 ~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~------------------~nkgh~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  223 MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS------------------YNKGHFGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             CccccccccccCCCceEEecCcceEEEEEeccCCceeee------------------cccCCCCceEEEEECCCCceeec
Confidence            244677778877  6899999999999999998643321                  23788889988887766  9999


Q ss_pred             ecCCCeEEEEeCCchhhHH
Q 009373          455 GGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       455 g~~Dg~i~vW~~~~~~~~~  473 (536)
                      ||+||+|++|....++...
T Consensus       285 GSEDGTirlWQt~~~~~~~  303 (334)
T KOG0278|consen  285 GSEDGTIRLWQTTPGKTYG  303 (334)
T ss_pred             cCCCceEEEEEecCCCchh
Confidence            9999999999998776553

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3.1e-26  Score=188.48  Aligned_cols=284  Identities=17%  Similarity=0.254  Sum_probs=225.6

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC------Cc---------eeeeeCCCCceEEE--EecCCCEEEEEe
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------GF---------SIASSKPLGCTIRA--VAADKKLLVAGG  217 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~------~~---------~~~~~~~~~~~v~~--~~~~~~~l~sg~  217 (536)
                      -.-+..|.+++|+|.|.+.+.|+...+.+|-....      +.         ..+.-+.|.+.|+|  ++|+|.+|++|+
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            34568899999999999999999999999875432      11         11222456666655  559999999999


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e-----CCEEEEEe-cCCeEEEEeCCCceEeEeee
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-----LTRIYSGS-WDMTVRVWDRALLKCLKVLR  290 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-----~~~l~s~s-~dg~i~iwd~~~~~~~~~~~  290 (536)
                      .|.+|++..+.....        ........+.-|.+.|..++| +     +..|++++ .|..|++-|..+++..+-+.
T Consensus       109 ndk~ik~l~fn~dt~--------~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTC--------NATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             CCceEEEEecccccc--------cccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            999999987654321        112244556779999999999 2     23566654 57788888999999888887


Q ss_pred             -ccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccc-c-----ccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          291 -HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-H-----VGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       291 -~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~-----~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                       |.+.|.++- +++-++++|+ |.+|++||++-..++.++... |     .+.|.+++..|.|++|++|-.|....+||+
T Consensus       181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence             999999987 9999999999 899999999999888877431 2     246899999999999999999999999999


Q ss_pred             ccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373          362 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  439 (536)
Q Consensus       362 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (536)
                      +.+      +.++.+.+|...|.++.|+|  .++++++.|..|++=|+......               .-+......|.
T Consensus       261 rg~------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~---------------el~~~vv~ehk  319 (350)
T KOG0641|consen  261 RGG------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH---------------ELPIMVVAEHK  319 (350)
T ss_pred             eCC------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh---------------cCceEEEEecc
Confidence            999      88999999999999999998  69999999999999998753211               12233445677


Q ss_pred             ccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373          440 CNLLSVDIGAD--RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~  467 (536)
                      ..+....+.+.  .+++.+.|.++.+|-+.
T Consensus       320 dk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  320 DKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CceEEEEecCccceeeeccCcceEEEeccC
Confidence            77777777766  78999999999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=2.8e-27  Score=203.84  Aligned_cols=265  Identities=18%  Similarity=0.243  Sum_probs=207.7

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      ..+.|.+|.|+|.+..|+.+++||++++|++...... ..-.|..++++++ .+...+++|+.||.|+.+|+.++     
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~-~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~-----   85 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK-LKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG-----   85 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh-hheecCCceeeeeccCCceEEEeccCceEEEEEecCC-----
Confidence            4688999999999999999999999999999877433 3345778888888 56789999999999999999886     


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec-CCc
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSD  312 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~  312 (536)
                               ....+..|..+|.|+.+  ..+.+++||+|++|++||.+.......+.....|.+++-.++.|+.|. +..
T Consensus        86 ---------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~  156 (323)
T KOG1036|consen   86 ---------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRK  156 (323)
T ss_pred             ---------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCce
Confidence                     34557789999999999  468999999999999999998777777777789999997777776655 999


Q ss_pred             EEEEeCCCCcEEEEE-ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC---------CC
Q 009373          313 VYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT---------GP  382 (536)
Q Consensus       313 i~i~d~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~---------~~  382 (536)
                      +.+||+++....... .....-.++++++.|++.-+++++-||.|.+=.+.......  ..-..++.|.         .+
T Consensus       157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~--skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ--SKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             EEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh--hhceeEEeeecccCCceEEEE
Confidence            999999987654422 23456689999999999889999999999886665541111  1222334442         38


Q ss_pred             eEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--CCEEEEecC
Q 009373          383 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGE  457 (536)
Q Consensus       383 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~  457 (536)
                      |++|+|+|  ..++||+.||.|.+||+.+.++..                   .++....+|.+++++  |..||.|+.
T Consensus       235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~-------------------q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK-------------------QLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eceeEeccccceEEecCCCceEEEccCcchhhhh-------------------hccCCCCceEEEEeccCCCeEEEEec
Confidence            99999998  789999999999999998754332                   234444555565554  558888764

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=4.4e-28  Score=208.43  Aligned_cols=284  Identities=15%  Similarity=0.258  Sum_probs=226.2

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC------------------ceeeeeCCCCceEEEE--ec
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------------------FSIASSKPLGCTIRAV--AA  208 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~------------------~~~~~~~~~~~~v~~~--~~  208 (536)
                      +....+..|.+++.+.+|+|||.++||||.|..|+|.|++..                  -.++++..|...|.++  +|
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            456788899999999999999999999999999999998721                  2466777787777655  58


Q ss_pred             CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEe
Q 009373          209 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL  286 (536)
Q Consensus       209 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~  286 (536)
                      ....|++|+.|++|+++|+....           .+..+.......+|.++.|  .|++|+.|....++++||+++.++.
T Consensus       183 re~ILiS~srD~tvKlFDfsK~s-----------aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf  251 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTS-----------AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF  251 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHH-----------HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence            88999999999999999985432           1222233345678999999  7789999999999999999999987


Q ss_pred             Eeee----ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcccccc-ceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          287 KVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       287 ~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                      ..-.    |.+.|+++.  +.+++.++++ ||.|++||--+++++.++..+|.+ .|.+..|..+|+++++.+.|..+++
T Consensus       252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL  331 (430)
T KOG0640|consen  252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL  331 (430)
T ss_pred             eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence            6554    888999998  7889999999 999999999999999999888876 7889999999999999999999999


Q ss_pred             EEcccCccccccceeeeccCCC--C---CeEEEEEc--CCeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCC
Q 009373          359 YEIINDCTEANVLLVATWIPHT--G---PVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP  430 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~--~---~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  430 (536)
                      |.+.++      +++..+.|..  +   --+...|+  .++++.-.. .+.+.-||.++..+....              
T Consensus       332 WEi~t~------R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~--------------  391 (430)
T KOG0640|consen  332 WEISTG------RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL--------------  391 (430)
T ss_pred             eeecCC------ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc--------------
Confidence            999999      6666665431  1   11233343  256655543 578999999986443222              


Q ss_pred             CeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373          431 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       431 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~  467 (536)
                          -.||.+.+..+.-++.  -++|+|.|-.+|+|--.
T Consensus       392 ----slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  392 ----SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             ----ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence                2467777777776655  89999999999999643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.5e-27  Score=218.38  Aligned_cols=293  Identities=15%  Similarity=0.173  Sum_probs=217.8

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-------ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIH  223 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~  223 (536)
                      -..+.+|+..|.++++.|.|..|+|||.|.+|++||+...       +.+.....|....+.+++.++.|++.+.....+
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            3578899999999999999999999999999999998754       233344567778888889999999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce-EeEeeec------cc
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLRH------SD  293 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~------~~  293 (536)
                      ++|-.... ..-...+...........||...++|.+|   +.+.+++++.||++++||+...+ ..+.+.+      .-
T Consensus       240 l~DRdG~~-~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  240 LLDRDGFE-IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             EEccCCce-eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            99854321 11112222223344556799999999999   44689999999999999987543 3344431      12


Q ss_pred             cEEE--EeecCCEEEEec-CCcEEEEeCCCC--cEEEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcc
Q 009373          294 WVYG--LAPHDTTVASTS-GSDVYIWDTNSG--CLLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       294 ~v~~--~~~~~~~l~~~~-d~~i~i~d~~~~--~~~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~  366 (536)
                      .++.  +.++++.+++|. ||+|.+|+....  .+...+..+|..  .|+|+.|+++|++|++-+.|+++++||++..+ 
T Consensus       319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-  397 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-  397 (641)
T ss_pred             CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-
Confidence            3333  348999999888 999999998553  344455567887  99999999999999999999999999999875 


Q ss_pred             ccccceeeeccC--CCCCeEEEEEcC--CeEEEEeC------CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373          367 EANVLLVATWIP--HTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  436 (536)
Q Consensus       367 ~~~~~~~~~~~~--h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (536)
                          +++....+  ...+-+.++|+|  .+|++|..      .|.+.+||..+......                   +.
T Consensus       398 ----kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k-------------------i~  454 (641)
T KOG0772|consen  398 ----KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK-------------------ID  454 (641)
T ss_pred             ----cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE-------------------ec
Confidence                34443333  334567889998  57777764      47899999887533321                   12


Q ss_pred             cccccEEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009373          437 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       437 ~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~  468 (536)
                      -.+..|..+.|++.  .|..|+.||+++||==++
T Consensus       455 i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  455 ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             CCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            22466777777776  889999999999875443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.9e-27  Score=228.59  Aligned_cols=324  Identities=17%  Similarity=0.201  Sum_probs=245.5

Q ss_pred             CCCchhhhhhhh-hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE
Q 009373          128 DKSWKELFVERE-FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV  206 (536)
Q Consensus       128 ~~~Wk~~~~~~~-~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~  206 (536)
                      .++|-....... ++.|.++-...+..|.+|.++|+.++|+|++.+++||+.|-.|+||+.++.+++.++.+|-..|..+
T Consensus        20 ~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~   99 (1202)
T KOG0292|consen   20 KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTV   99 (1202)
T ss_pred             CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEe
Confidence            445544332222 3444444445678899999999999999999999999999999999999999999999999988765


Q ss_pred             e--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCC
Q 009373          207 A--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRAL  282 (536)
Q Consensus       207 ~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~  282 (536)
                      .  +.-..|+++|.|.+|+||++.+.             .++..+.||...|.|-.|.+  +.++++|-|.+|++||+..
T Consensus       100 ~FHheyPWIlSASDDQTIrIWNwqsr-------------~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  100 FFHHEYPWILSASDDQTIRIWNWQSR-------------KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             eccCCCceEEEccCCCeEEEEeccCC-------------ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence            5  66779999999999999999764             58889999999999999954  7999999999999999742


Q ss_pred             ce---------------------------E--eEeee-ccccEEEEee--cCCEEEEec-CCcEEEEeCCCCcEE--EEE
Q 009373          283 LK---------------------------C--LKVLR-HSDWVYGLAP--HDTTVASTS-GSDVYIWDTNSGCLL--TVV  327 (536)
Q Consensus       283 ~~---------------------------~--~~~~~-~~~~v~~~~~--~~~~l~~~~-d~~i~i~d~~~~~~~--~~~  327 (536)
                      .+                           .  ...+. |...|+-.+.  .-.++++|+ |..|++|.+...+.-  .+.
T Consensus       167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc  246 (1202)
T KOG0292|consen  167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC  246 (1202)
T ss_pred             hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence            11                           0  01122 6666666664  447899998 789999998765432  223


Q ss_pred             ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEE
Q 009373          328 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLID  406 (536)
Q Consensus       328 ~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd  406 (536)
                       .+|.+.|.++-|+|..+++++.|+|++|+|||+...      ..+.++....+.-+.++.+| --|++++.|+-+.||.
T Consensus       247 -rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR------t~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFk  319 (1202)
T KOG0292|consen  247 -RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR------TSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFK  319 (1202)
T ss_pred             -hcccCCcceEEecCccceeEecCCCccEEEEecccc------cceeeeeccCCeEEEEEecCCcceeeeecCCceEEEE
Confidence             479999999999999999999999999999999888      77888888889999999998 3577777888888998


Q ss_pred             CCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchh
Q 009373          407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLEN  486 (536)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~  486 (536)
                      ++..                             .+  +...+++.|.-.- |..|+.+|+.+.+...-.  .++   ...
T Consensus       320 leRE-----------------------------rp--a~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~--~lr---~~g  362 (1202)
T KOG0292|consen  320 LERE-----------------------------RP--AYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA--SLR---RPG  362 (1202)
T ss_pred             Eccc-----------------------------Cc--eEEEcCCEEEEEc-cceEEeeeccccccceeE--ecc---CCC
Confidence            8641                             12  2233455444333 889999999984433211  111   111


Q ss_pred             HHHhhhhccccccCCCCcceeE
Q 009373          487 RMRRRKLQTEMSSKGGRTDQCS  508 (536)
Q Consensus       487 ~~~~~~~~~~~~~~g~~~~~~~  508 (536)
                      .......++..+|.-+.+..|+
T Consensus       363 ~~~~~~~smsYNpae~~vlics  384 (1202)
T KOG0292|consen  363 TLWQPPRSLSYNPAENAVLICS  384 (1202)
T ss_pred             cccCCcceeeeccccCeEEEEe
Confidence            1223345677788777777776

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.4e-28  Score=212.70  Aligned_cols=272  Identities=19%  Similarity=0.329  Sum_probs=221.5

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee--------CCCCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--------KPLGCTIRAVA--ADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--------~~~~~~v~~~~--~~~~~l~sg~~dg~i~v  224 (536)
                      .|...-+-|..|+|||++|++||.||.|.+||..+|+..+.+        --+..+|.|++  .|...+++|+.||.|++
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            366777889999999999999999999999999999765543        33566777766  67889999999999999


Q ss_pred             EEcccCccceecccCcccccceEEee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe-
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~-  299 (536)
                      |.+++|.             +...+. .|+..|+|+.|  |+..+++++.|.++++.-+.+|++++.++ |...|+... 
T Consensus       290 Wri~tG~-------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f  356 (508)
T KOG0275|consen  290 WRIETGQ-------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF  356 (508)
T ss_pred             EEEecch-------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence            9998874             555555 79999999999  88899999999999999999999999998 999998765 


Q ss_pred             -ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          300 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       300 -~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                       ++|..+++++ ||+|++|+..+.+++.+++. +...+|+++..-|. ...++++...++|+|-++...       .+++
T Consensus       357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-------vVrs  429 (508)
T KOG0275|consen  357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-------VVRS  429 (508)
T ss_pred             cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-------EEee
Confidence             8999999988 99999999999999999874 34557888887774 468899999999999998764       3444


Q ss_pred             ccC---CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--
Q 009373          376 WIP---HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--  448 (536)
Q Consensus       376 ~~~---h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--  448 (536)
                      +..   ..+...+...+|  .++++.+.|+.++.+.+.++                   ...+++.-|...+..+.-.  
T Consensus       430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG-------------------~LE~tl~VhEkdvIGl~HHPH  490 (508)
T KOG0275|consen  430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG-------------------KLERTLPVHEKDVIGLTHHPH  490 (508)
T ss_pred             eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC-------------------ceeeeeecccccccccccCcc
Confidence            432   233444555565  79999999999999998874                   3334455566666666644  


Q ss_pred             CCEEEEecCCCeEEEEe
Q 009373          449 ADRIVCGGEEGIVRIWN  465 (536)
Q Consensus       449 ~~~l~sg~~Dg~i~vW~  465 (536)
                      .+.+|+-++||.+++|.
T Consensus       491 qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  491 QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cchhhhhcccchhhhcC
Confidence            45999999999999995

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=198.03  Aligned_cols=252  Identities=17%  Similarity=0.217  Sum_probs=207.5

Q ss_pred             hhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEE
Q 009373          137 EREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLV  214 (536)
Q Consensus       137 ~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~  214 (536)
                      ++..+.|+-.....++++.||...|..++.+.|+..+++|+.|..|.+||+++|+.++.+.+|.+.|.++.+  +...++
T Consensus        38 drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~  117 (307)
T KOG0316|consen   38 DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVA  117 (307)
T ss_pred             CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEE
Confidence            344455554455679999999999999999999999999999999999999999999999999999988874  566899


Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecccc
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW  294 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  294 (536)
                      +|+.|.++++||.++..           ..++..+....+.|.++...+..+++||.||+++.||++.|+....+ ...+
T Consensus       118 SgsfD~s~r~wDCRS~s-----------~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy-~g~p  185 (307)
T KOG0316|consen  118 SGSFDSSVRLWDCRSRS-----------FEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY-FGHP  185 (307)
T ss_pred             eccccceeEEEEcccCC-----------CCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh-cCCc
Confidence            99999999999987743           45677777788999999999999999999999999999988765443 3445


Q ss_pred             EEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEE--EEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373          295 VYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS--LARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       295 v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~--l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                      |++++  ++++...+++ |+++++.|-.+|+.+..++ +|...-+.  .+++.....+++|++||.|++||+.+.     
T Consensus       186 it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~-----  259 (307)
T KOG0316|consen  186 ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE-----  259 (307)
T ss_pred             ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEeccCCceEEEEEeccc-----
Confidence            56555  8999888888 9999999999999999986 68765443  456677789999999999999999988     


Q ss_pred             cceeeeccCCCCC-eEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          370 VLLVATWIPHTGP-VNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       370 ~~~~~~~~~h~~~-v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                       ..+..+..|... |.+++++|  ..++++.. +.+..|--+
T Consensus       260 -~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~~  299 (307)
T KOG0316|consen  260 -TQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQE  299 (307)
T ss_pred             -eeeeeeccCCceeEEeeecccCccceeEecC-Cceeceeeh
Confidence             667777777777 89999998  34444443 345666433

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6e-28  Score=202.06  Aligned_cols=233  Identities=17%  Similarity=0.158  Sum_probs=196.8

Q ss_pred             CccccEEEEEEecC-CCEEEEEeCCCcEEEEECCC-CceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccC
Q 009373          156 GHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLED-GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       156 ~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      .-.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|...|.++.   .+...+++++.||+|++|+... 
T Consensus        58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-  136 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-  136 (311)
T ss_pred             ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-
Confidence            35688999999986 46889999999999999643 367888899999999997   4567889999999999999754 


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecCC
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDT  303 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~  303 (536)
                                  ...+.++.+|..-|....|   .++.++++|.|+++++||++.......+. |...+.++.   .+..
T Consensus       137 ------------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~  204 (311)
T KOG0277|consen  137 ------------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHN  204 (311)
T ss_pred             ------------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCc
Confidence                        3467789999999999999   67899999999999999998644333355 888999887   6778


Q ss_pred             EEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      .+++++ |+.|++||++.-+ ++..+ .+|.-.|+.++|+|.. ..|++++.|-+++|||...+.     ..+.+..-|+
T Consensus       205 vl~Tg~vd~~vr~wDir~~r~pl~eL-~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d-----s~~e~~~~Ht  278 (311)
T KOG0277|consen  205 VLATGGVDNLVRGWDIRNLRTPLFEL-NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD-----SAIETVDHHT  278 (311)
T ss_pred             EEEecCCCceEEEEehhhccccceee-cCCceEEEEEecCcchhhHhhhccccceEEecccccch-----hhhhhhhccc
Confidence            888888 9999999999865 45555 5899999999999965 689999999999999987553     4566677899


Q ss_pred             CCeEEEEEc---CCeEEEEeCCCcEEEEEC
Q 009373          381 GPVNSLAFE---FPWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       381 ~~v~~l~~~---~~~l~s~s~dg~i~vwd~  407 (536)
                      .-|..+.|+   |.++++++.|+.++||+.
T Consensus       279 EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  279 EFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEeccccccccCceeeecccccceeeecc
Confidence            999999996   589999999999999984

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.9e-27  Score=214.80  Aligned_cols=274  Identities=19%  Similarity=0.290  Sum_probs=217.7

Q ss_pred             eeeCccccEEEEEEecCCCE-EEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373          153 VLYGHTEAVLTVFVLASAKL-LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~-l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      .+..-.+.|.+++|+|...+ +|+++ .-.|.||+..+....+++......+.+.+  .||.++++|+..|.|+++|..+
T Consensus        21 ~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~   99 (487)
T KOG0310|consen   21 PVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS   99 (487)
T ss_pred             ccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence            34444578999999997553 33333 36799999998888877766666665554  7899999999999999999644


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecC
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHD  302 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~  302 (536)
                                   ...+..+.+|+.+|..+.|   ++..+++|++|+.+++||+.+......+. |.+.|.|.+   .++
T Consensus       100 -------------r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~  166 (487)
T KOG0310|consen  100 -------------RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPAND  166 (487)
T ss_pred             -------------HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCC
Confidence                         2356678899999999998   66789999999999999999988644555 999999987   456


Q ss_pred             CEEEEec-CCcEEEEeCCCC-cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      .++++|+ ||.|++||+++. ..+..+.  |..+|..+.+-|.|..+++++. ..|+|||+.++.     +.+..+..|.
T Consensus       167 hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~-----qll~~~~~H~  238 (487)
T KOG0310|consen  167 HIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG-----QLLTSMFNHN  238 (487)
T ss_pred             eEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc-----eehhhhhccc
Confidence            6888888 999999999987 6677774  9999999999999999999875 469999999774     4455556699


Q ss_pred             CCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEec
Q 009373          381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGG  456 (536)
Q Consensus       381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~  456 (536)
                      ..|+|+++..  ..|++|+-|+.|++||+.+.+-...                    -...++|++++.++  +.++.|.
T Consensus       239 KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s--------------------~~~~~pvLsiavs~dd~t~viGm  298 (487)
T KOG0310|consen  239 KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS--------------------WKYPGPVLSIAVSPDDQTVVIGM  298 (487)
T ss_pred             ceEEEEEeecCCceEeecccccceEEEEccceEEEEe--------------------eecccceeeEEecCCCceEEEec
Confidence            9999999964  8999999999999999766422211                    23446777777655  5999999


Q ss_pred             CCCeEEEEeCCc
Q 009373          457 EEGIVRIWNFSQ  468 (536)
Q Consensus       457 ~Dg~i~vW~~~~  468 (536)
                      .||.+-+=+...
T Consensus       299 snGlv~~rr~~~  310 (487)
T KOG0310|consen  299 SNGLVSIRRREV  310 (487)
T ss_pred             ccceeeeehhhc
Confidence            999988774443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=2.6e-26  Score=216.11  Aligned_cols=237  Identities=30%  Similarity=0.432  Sum_probs=204.2

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ....+.+|...+..+.|+|+++++++++.||.|++|++.+++.+..+..|...+.++.  +++.++++++.||.|.+||+
T Consensus        43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence            5678889999999999999999999999999999999999888888888887777665  66688888888999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                      .++.             ....+..|...|.++.+  ++.++++++.|+.|++||+++++....+. +...+.++.  +++
T Consensus       123 ~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  189 (289)
T cd00200         123 ETGK-------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG  189 (289)
T ss_pred             CCcE-------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc
Confidence            7542             45556688999999999  34677777779999999999888887777 666888877  677


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      +.+++++ ++.+++||+++++.+..+. .|...+.++.|+|++.++++++.||.|++||+.+.      .....+..|..
T Consensus       190 ~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~------~~~~~~~~~~~  262 (289)
T cd00200         190 EKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG------ECVQTLSGHTN  262 (289)
T ss_pred             CEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc------eeEEEccccCC
Confidence            6777777 8999999999988888774 58889999999999999999888999999999877      56677778999


Q ss_pred             CeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373          382 PVNSLAFEF--PWLVSAAGDGKLSLID  406 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~dg~i~vwd  406 (536)
                      .|.+++|++  .+|++++.||.|++|+
T Consensus       263 ~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         263 SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999987  7999999999999996

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.5e-28  Score=228.61  Aligned_cols=236  Identities=22%  Similarity=0.356  Sum_probs=199.1

Q ss_pred             ccccEE---EEEEe-cCCCEEEEEeCCCcEEEEECCCCc------eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009373          157 HTEAVL---TVFVL-ASAKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       157 h~~~V~---~v~~~-~~~~~l~sgs~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~v  224 (536)
                      |...|.   .+..+ |.+++|+|||.||.|++|+.....      .+..++.|...|..+.  .+++.|+++|.|-+|++
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV   99 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence            444444   33343 457789999999999999985432      3667788988887765  77889999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce--EeEee----------
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK--CLKVL----------  289 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~--~~~~~----------  289 (536)
                      |+...+.           ..+..++..|.+.|.|+++   +...+++|+-|+.|.+||++++.  .+..+          
T Consensus       100 W~~~~~~-----------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s  168 (735)
T KOG0308|consen  100 WNAHKDN-----------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS  168 (735)
T ss_pred             eecccCc-----------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence            9986542           2366678889999999999   66789999999999999999873  23222          


Q ss_pred             eccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcc
Q 009373          290 RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       290 ~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~  366 (536)
                      .+...|++++  +.+..+++|+ .+.+++||.++++.+..+. ||...|.++..++||..+++++.||+|++||+...  
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ--  245 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ--  245 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeecccc--
Confidence            1567888888  5666888888 8999999999999999997 89999999999999999999999999999999988  


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                          +++.++..|...|+++..++  .++++|+.||.|..=|+++.
T Consensus       246 ----rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  246 ----RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ----ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                89999999999999999988  68999999999999999875

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-27  Score=215.76  Aligned_cols=240  Identities=21%  Similarity=0.321  Sum_probs=204.1

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--e-cCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--A-ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~-~~~~~l~sg~~dg~i~vwd  226 (536)
                      ..+++.-..+.|+++.|-.||++||+|+..|.|+|||+.+...++.+.+|..++...  + .++..+++|+.|+.+++||
T Consensus        60 ~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d  139 (487)
T KOG0310|consen   60 VRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWD  139 (487)
T ss_pred             hhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEE
Confidence            445566677899999999999999999999999999987777788888888877554  4 4567889999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCc-eEeEeeeccccEEEEe--e
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLA--P  300 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~--~  300 (536)
                      +.+..             ....+.+|++.|.|.++   ++..++|||.||+|++||+++. ..+..+.|..+|-.+.  |
T Consensus       140 ~s~a~-------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp  206 (487)
T KOG0310|consen  140 LSTAY-------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP  206 (487)
T ss_pred             cCCcE-------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC
Confidence            97752             35578899999999999   5568999999999999999987 7778888999999887  8


Q ss_pred             cCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373          301 HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       301 ~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      .|..+++++++.|++||+.+|.........|...|+|+++..++..|++|+-||.|++||+.+.      +.+..+ .-.
T Consensus       207 sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~------Kvv~s~-~~~  279 (487)
T KOG0310|consen  207 SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY------KVVHSW-KYP  279 (487)
T ss_pred             CCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce------EEEEee-ecc
Confidence            8999999999999999999776554444459999999999999999999999999999997776      455554 457


Q ss_pred             CCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      ++|.+++.+|  ..++.|-.||.+.+=+...
T Consensus       280 ~pvLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  280 GPVLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             cceeeEEecCCCceEEEecccceeeeehhhc
Confidence            8999999987  7999999999887765443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-26  Score=198.75  Aligned_cols=236  Identities=17%  Similarity=0.264  Sum_probs=203.0

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCC----CEEEEEeCCCcEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK----KLLVAGGTDGFIHCWR  226 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~l~sg~~dg~i~vwd  226 (536)
                      ...+..|.++|++++.+  +.++|+||.|-+|+|||+.+...+..+-.|.+.|.++.+.+    ..|++|+.||.|.+|+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            55788999999999995  99999999999999999999999999999999999988433    3799999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEeecC
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHD  302 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~  302 (536)
                      ...             ......+.+|.+.|+.++.  .++.-++.+.|+.+++||+-.|+.-...+  +........+.|
T Consensus       114 ~~~-------------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~G  180 (362)
T KOG0294|consen  114 VGS-------------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQG  180 (362)
T ss_pred             cCC-------------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCC
Confidence            844             5578889999999999999  56788899999999999999988766655  555666666999


Q ss_pred             CEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          303 TTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       303 ~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      .+++.+....|-+|.+.+......+.  ....+.++.|. ++..|++|++|+.|.+||..+.      .+...+.+|...
T Consensus       181 d~F~v~~~~~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~------~~~~~~~AH~~R  251 (362)
T KOG0294|consen  181 DHFVVSGRNKIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSD------TPLTEFLAHENR  251 (362)
T ss_pred             CEEEEEeccEEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCC------ccceeeecchhh
Confidence            99999999999999999887766664  33567777775 4678999999999999999886      788889999999


Q ss_pred             eEEEEE-c-C--CeEEEEeCCCcEEEEECCcc
Q 009373          383 VNSLAF-E-F--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       383 v~~l~~-~-~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      |-++.+ . |  .+|+++|.||.|+|||++..
T Consensus       252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            999996 2 2  69999999999999999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.4e-26  Score=219.43  Aligned_cols=268  Identities=24%  Similarity=0.395  Sum_probs=212.4

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--eeCCCCceEEE-Ee---cCCCEEEEEeCCCcEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SSKPLGCTIRA-VA---ADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~~~~~v~~-~~---~~~~~l~sg~~dg~i~v  224 (536)
                      .+.+.||...|..++..+ +..++++|.||++++|+-..++.+.  .+.+|.+.+.. ++   .++..+++|+.|+.|.+
T Consensus         7 s~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v   85 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV   85 (745)
T ss_pred             EEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence            478999999999998764 5579999999999999987665544  34555554433 33   35567999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  300 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~  300 (536)
                      |...+.             .+...+.+|.+.|.+++. ....+++||.|.++++|-..  ++...+. |...|.++.  |
T Consensus        86 ~~~~~~-------------~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~  150 (745)
T KOG0301|consen   86 FKLSQA-------------EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLP  150 (745)
T ss_pred             EecCCC-------------CchhhhhccccceeeeecCCcCceEecccccceEEecch--hhhcccCCcchheeeeeecC
Confidence            998654             477889999999999997 45559999999999999864  4444555 999999998  6


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      .+ .+++|+ |.+|++|.-  ++.++++. +|..-|+.+++-+++. |++++.||.|+.|++. +      ..+..+.+|
T Consensus       151 e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~-g------e~l~~~~gh  218 (745)
T KOG0301|consen  151 EN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLD-G------EVLLEMHGH  218 (745)
T ss_pred             CC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCCC-eEeecCCceEEEEecc-C------ceeeeeecc
Confidence            66 555555 999999986  67788886 6999999999998755 7899999999999994 4      478889999


Q ss_pred             CCCeEEEEE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec-CCEEEEec
Q 009373          380 TGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-ADRIVCGG  456 (536)
Q Consensus       380 ~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~  456 (536)
                      ++-|+++..  +...+++++.|+++++|+.....+                     .+.--+..+++...- ..-+++|+
T Consensus       219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q---------------------~I~lPttsiWsa~~L~NgDIvvg~  277 (745)
T KOG0301|consen  219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQ---------------------VITLPTTSIWSAKVLLNGDIVVGG  277 (745)
T ss_pred             ceEEEEEEecCCCCeEEEecCCceEEEeecCceEE---------------------EEecCccceEEEEEeeCCCEEEec
Confidence            999999995  348999999999999999864321                     122222356666643 33689999


Q ss_pred             CCCeEEEEeCC
Q 009373          457 EEGIVRIWNFS  467 (536)
Q Consensus       457 ~Dg~i~vW~~~  467 (536)
                      +||.||||...
T Consensus       278 SDG~VrVfT~~  288 (745)
T KOG0301|consen  278 SDGRVRVFTVD  288 (745)
T ss_pred             cCceEEEEEec
Confidence            99999999987

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=3.8e-26  Score=227.80  Aligned_cols=291  Identities=18%  Similarity=0.246  Sum_probs=227.9

Q ss_pred             ccccEEEEEEecCCCEEEEEe--CCCcEEEEECCC------------CceeeeeCCCCceEEEE--ecCCCEEEEEeCCC
Q 009373          157 HTEAVLTVFVLASAKLLFTSG--YDSIVRMWHLED------------GFSIASSKPLGCTIRAV--AADKKLLVAGGTDG  220 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs--~dg~v~iwd~~~------------~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg  220 (536)
                      +...|.+++.+|++..++||+  .||.++||+.+.            .+.+.+...|.+++.|+  ++||.+||+|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456799999999999999999  899999998742            13345567788877776  59999999999999


Q ss_pred             cEEEEEccc-Cccceec----ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-cc
Q 009373          221 FIHCWRAVE-VLPHLFD----ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HS  292 (536)
Q Consensus       221 ~i~vwd~~~-~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~  292 (536)
                      .|.||.... +....+.    ....+..+....+.+|.+.|.+++|  ++.+|++++.|++|.+||..+.+.+..+. |.
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~  171 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ  171 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence            999999874 1111221    1223456778889999999999999  68899999999999999999999999888 99


Q ss_pred             ccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-----ccccceEEEEEeCCCCEEEEEcC----CCcEEEEE
Q 009373          293 DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-----AHVGNTKSLARSHTGDFLFTGGE----DGAIHMYE  360 (536)
Q Consensus       293 ~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~----dg~i~iwd  360 (536)
                      +.|..+.  |-|+++++-+ |.+|++|++.+......+..     +-...++.+.|+|||++|++...    -.++.|.+
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie  251 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE  251 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence            9999887  8899999988 89999999887666655542     12335788999999999998643    34577777


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcC-------C------------eEEEEeCCCcEEEEECCcccccCCCCCCCc
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEF-------P------------WLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  421 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------~------------~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  421 (536)
                      -.+.      ..-..+.||.+++.+++|+|       .            .+++||.|++|.||........        
T Consensus       252 R~tW------k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl--------  317 (942)
T KOG0973|consen  252 RGTW------KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL--------  317 (942)
T ss_pred             cCCc------eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch--------
Confidence            6555      56677889999999999975       2            6789999999999998653222        


Q ss_pred             eeeEEeeCCCeeeeccccccEEEEEec--CCEEEEecCCCeEEEEeCCchhh
Q 009373          422 VSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                                ....+-...+|.+++|+  |-.|..+|.||+|.+..|++.+.
T Consensus       318 ----------~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  318 ----------FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             ----------hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence                      11222233456666665  55999999999999999997543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8e-26  Score=195.22  Aligned_cols=255  Identities=19%  Similarity=0.304  Sum_probs=204.3

Q ss_pred             EEEEeCCCcEEEEECCCC------------ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCc
Q 009373          173 LFTSGYDSIVRMWHLEDG------------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS  240 (536)
Q Consensus       173 l~sgs~dg~v~iwd~~~~------------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  240 (536)
                      +++|++...|.=+++.-.            .++..++.|.+++.+++-++.++++|+.|-+|+|||+...          
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~----------   73 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR----------   73 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccch----------
Confidence            567777776666665321            2345568899999999999999999999999999999664          


Q ss_pred             ccccceEEeeCCccCEEEEEEeC----CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCc
Q 009373          241 EKQNTQFRLWEHEGPITSLALDL----TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSD  312 (536)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~  312 (536)
                         .....+..|.+.|+++.|.+    +.|++|+.||.|.+|+.....++..+. |...|+.++  |.+++.++.+ |+.
T Consensus        74 ---~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~  150 (362)
T KOG0294|consen   74 ---KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQV  150 (362)
T ss_pred             ---hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCce
Confidence               35666778999999999943    379999999999999999999999998 888899888  8888877766 999


Q ss_pred             EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-CC
Q 009373          313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FP  391 (536)
Q Consensus       313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~  391 (536)
                      ++.||+-.|+.-....-.+  ..+.+.|+|.|.+++.++.++ |-+|.+.+..      ....+. ....+.++.|. ..
T Consensus       151 lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~------v~~~i~-~~~r~l~~~~l~~~  220 (362)
T KOG0294|consen  151 LRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRNK-IDIYQLDNAS------VFREIE-NPKRILCATFLDGS  220 (362)
T ss_pred             eeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEeccE-EEEEecccHh------Hhhhhh-ccccceeeeecCCc
Confidence            9999999998776665333  334599999999999888765 8999988762      222222 23567788884 68


Q ss_pred             eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC----CEEEEecCCCeEEEEeCC
Q 009373          392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA----DRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       392 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~sg~~Dg~i~vW~~~  467 (536)
                      .|++|+.|+.|.+||-.+.                   .+...+.+|...|-++.+-.    .+|+|+|.||.|+|||++
T Consensus       221 ~L~vG~d~~~i~~~D~ds~-------------------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  221 ELLVGGDNEWISLKDTDSD-------------------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             eEEEecCCceEEEeccCCC-------------------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence            9999999999999998863                   33445678888888887433    499999999999999999


Q ss_pred             ch
Q 009373          468 QA  469 (536)
Q Consensus       468 ~~  469 (536)
                      ..
T Consensus       282 ~~  283 (362)
T KOG0294|consen  282 ME  283 (362)
T ss_pred             cc
Confidence            76

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=5.6e-26  Score=219.62  Aligned_cols=363  Identities=17%  Similarity=0.234  Sum_probs=265.6

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCC-EEEEE
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKK-LLVAG  216 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg  216 (536)
                      ++.++.+.+..+.+++++...|+++.-+|--+.+|.|..+|+|.++|+..++.+.+++...+.|..++  .||. .+++|
T Consensus       184 lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~  263 (910)
T KOG1539|consen  184 LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASG  263 (910)
T ss_pred             EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEec
Confidence            45566666778999999999999999999989999999999999999999999999987778888887  4566 67778


Q ss_pred             eCCCcEEEEEcccCccc-----------------------------------eecccCcccccceEEeeCCccCEEEEEE
Q 009373          217 GTDGFIHCWRAVEVLPH-----------------------------------LFDISGSEKQNTQFRLWEHEGPITSLAL  261 (536)
Q Consensus       217 ~~dg~i~vwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~h~~~v~~l~~  261 (536)
                      +..|.+.+||++.....                                   +++ .+.......+.-.||..+..++.|
T Consensus       264 ~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD-~~dg~pR~LR~R~GHs~Pp~~irf  342 (910)
T KOG1539|consen  264 RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD-SGDGVPRLLRSRGGHSAPPSCIRF  342 (910)
T ss_pred             cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee-CCCCcchheeeccCCCCCchheee
Confidence            88899999999865421                                   011 001111223344589999999999


Q ss_pred             ---eCCEEEEEecCCeEEEEeCCCceEeE---------------eee----ccccEEEEeec-------CCEEEEec-CC
Q 009373          262 ---DLTRIYSGSWDMTVRVWDRALLKCLK---------------VLR----HSDWVYGLAPH-------DTTVASTS-GS  311 (536)
Q Consensus       262 ---~~~~l~s~s~dg~i~iwd~~~~~~~~---------------~~~----~~~~v~~~~~~-------~~~l~~~~-d~  311 (536)
                         ++..+.+++.|++.+.+++.....-+               ...    .-.+|..++..       .+.+++.- +.
T Consensus       343 y~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~  422 (910)
T KOG1539|consen  343 YGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKR  422 (910)
T ss_pred             eccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcc
Confidence               66789999999999999864321111               110    12345555521       23333333 67


Q ss_pred             cEEEEeCCCCcE-EEEEccc----cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec---cCCCCCe
Q 009373          312 DVYIWDTNSGCL-LTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW---IPHTGPV  383 (536)
Q Consensus       312 ~i~i~d~~~~~~-~~~~~~~----~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v  383 (536)
                      .++.|+.+.... ...+...    ....+++++.++.|++.+.|+..|.|-+|++.++      .....+   ..|.++|
T Consensus       423 ~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG------i~r~sf~~~~ah~~~V  496 (910)
T KOG1539|consen  423 SAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG------IHRKSFGDSPAHKGEV  496 (910)
T ss_pred             eEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC------eeecccccCccccCce
Confidence            899999988765 2333211    3368999999999999999999999999999998      455555   5899999


Q ss_pred             EEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE--------------------e--eCCCeeeecccc
Q 009373          384 NSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI--------------------E--VEPPQRMLHGFE  439 (536)
Q Consensus       384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--------------------~--~~~~~~~~~~~~  439 (536)
                      ++++.++  ..+++++.+|.+++||..+.........+..+..+.                    .  .....+.+.||+
T Consensus       497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~  576 (910)
T KOG1539|consen  497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG  576 (910)
T ss_pred             eEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc
Confidence            9999986  689999999999999998765333322222211110                    0  122345678999


Q ss_pred             ccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373          440 CNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN  517 (536)
Q Consensus       440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  517 (536)
                      ..+++++|+++  +|++++.|++||+||+.++..+......           .....+.|+|+|..+|+..++..+    
T Consensus       577 nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd-----------~~~~sls~SPngD~LAT~Hvd~~g----  641 (910)
T KOG1539|consen  577 NRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD-----------SPCTSLSFSPNGDFLATVHVDQNG----  641 (910)
T ss_pred             cceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC-----------CcceeeEECCCCCEEEEEEecCce----
Confidence            99988887766  9999999999999999999887654332           234689999999999998775433    


Q ss_pred             CCcceeeccc
Q 009373          518 GNRRSVWHNK  527 (536)
Q Consensus       518 ~~~~~~~~~~  527 (536)
                         -++|.|+
T Consensus       642 ---IylWsNk  648 (910)
T KOG1539|consen  642 ---IYLWSNK  648 (910)
T ss_pred             ---EEEEEch
Confidence               2556555

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=1.8e-25  Score=220.23  Aligned_cols=238  Identities=16%  Similarity=0.229  Sum_probs=179.9

Q ss_pred             eeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------ceeeeeCCCCceEEEEe--cCC-CEEEEEeCCC
Q 009373          152 DVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADK-KLLVAGGTDG  220 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg  220 (536)
                      ..+.||.+.|++++|+| ++++|++|+.|++|++||+.++       ..+..+.+|...|.++.  |++ ++|++|+.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            46889999999999999 7899999999999999999765       34667888988887665  654 6999999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE-
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY-  296 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~-  296 (536)
                      +|++||+.++.             ....+.+|...|.+++|  ++..|++++.|++|++||+++++.+..+. |..... 
T Consensus       149 tVrIWDl~tg~-------------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~  215 (493)
T PTZ00421        149 VVNVWDVERGK-------------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQ  215 (493)
T ss_pred             EEEEEECCCCe-------------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcce
Confidence            99999997653             45567789999999999  77899999999999999999999887776 554322 


Q ss_pred             EE--eecCCEEEEec-----CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCccc
Q 009373          297 GL--APHDTTVASTS-----GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTE  367 (536)
Q Consensus       297 ~~--~~~~~~l~~~~-----d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~  367 (536)
                      .+  .+++..+++++     |+.|++||+++.. ++......+...+....|++++++|++|+ .||.|++||+.++.  
T Consensus       216 ~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~--  293 (493)
T PTZ00421        216 RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER--  293 (493)
T ss_pred             EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc--
Confidence            22  25555665532     5889999998764 33333222344566677899999999887 49999999999873  


Q ss_pred             cccceeeec-cCCCCCeEEEEEcCCeEEEEeCCCcEEEEECC
Q 009373          368 ANVLLVATW-IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       368 ~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~  408 (536)
                          .+... ..+..++.+++|.|.+.+-...--..++|.+.
T Consensus       294 ----~~~~~~~~s~~~~~g~~~~pk~~~dv~~~Ei~r~~~l~  331 (493)
T PTZ00421        294 ----LTFCSSYSSVEPHKGLCMMPKWSLDTRKCEIARFYALT  331 (493)
T ss_pred             ----eEEEeeccCCCCCcceEecccccccccceeeeEEEEec
Confidence                33322 23556788888887544443333344555543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1e-25  Score=202.41  Aligned_cols=272  Identities=21%  Similarity=0.256  Sum_probs=222.9

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      ...|+++...|..+.++||+.|.++.++|..+++.+..+.+|...|..+.  ++...+++++.|..|+||.....     
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-----  293 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-----  293 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----
Confidence            35788898888878999999999999999999999999999999998876  77889999999999999997543     


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeecc---ccEEEEe--ecCCEEEEe
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS---DWVYGLA--PHDTTVAST  308 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~--~~~~~l~~~  308 (536)
                              ........|..+|+.+..  .++||++++.||+..+.|++++.++....+.   -.+++..  |+|.+|.+|
T Consensus       294 --------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg  365 (506)
T KOG0289|consen  294 --------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG  365 (506)
T ss_pred             --------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence                    245556789999999988  8899999999999999999999998887754   2355554  999999999


Q ss_pred             c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEE
Q 009373          309 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSL  386 (536)
Q Consensus       309 ~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l  386 (536)
                      . |+.++|||+.++..+..|. +|.++|..++|+.+|-+|+++++|+.|++||+|...      .+.++.- ...+|.++
T Consensus       366 t~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~------n~kt~~l~~~~~v~s~  438 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK------NFKTIQLDEKKEVNSL  438 (506)
T ss_pred             CCCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc------ccceeeccccccceeE
Confidence            9 9999999999999999996 699999999999999999999999999999999873      3333322 23478999


Q ss_pred             EEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEE
Q 009373          387 AFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVR  462 (536)
Q Consensus       387 ~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~  462 (536)
                      .|+  +.+|+.++.|=.|++++-.+  +.+               .....++.|.+....+.|...  +++++|.|..++
T Consensus       439 ~fD~SGt~L~~~g~~l~Vy~~~k~~--k~W---------------~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  439 SFDQSGTYLGIAGSDLQVYICKKKT--KSW---------------TEIKELADHSGLSTGVRFGEHAQYLASTSMDAILR  501 (506)
T ss_pred             EEcCCCCeEEeecceeEEEEEeccc--ccc---------------eeeehhhhcccccceeeecccceEEeeccchhheE
Confidence            996  48999998876666665433  121               112234556666667777665  999999999999


Q ss_pred             EEeC
Q 009373          463 IWNF  466 (536)
Q Consensus       463 vW~~  466 (536)
                      ++.+
T Consensus       502 ~~a~  505 (506)
T KOG0289|consen  502 LYAL  505 (506)
T ss_pred             Eeec
Confidence            8865

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.1e-26  Score=196.00  Aligned_cols=289  Identities=20%  Similarity=0.178  Sum_probs=220.2

Q ss_pred             cCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeC
Q 009373           99 SDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGY  178 (536)
Q Consensus        99 ~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~  178 (536)
                      ..|+  |.+...+|+.....+.+.+.++....|.....+            .+.++.||++.|+|++.+-+.++++||+.
T Consensus         7 ~GHE--RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe------------rlGty~GHtGavW~~Did~~s~~liTGSA   72 (327)
T KOG0643|consen    7 QGHE--RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE------------RLGTYDGHTGAVWCCDIDWDSKHLITGSA   72 (327)
T ss_pred             ccCc--cccceEEecCCCcEEEEecCCCCceEEEecCCc------------eeeeecCCCceEEEEEecCCcceeeeccc
Confidence            4455  556666666555555555566666667554443            57899999999999999999999999999


Q ss_pred             CCcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEEEeC-----CCcEEEEEcccCccceecccCcccccceEEeeCC
Q 009373          179 DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGT-----DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  252 (536)
Q Consensus       179 dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  252 (536)
                      |.++++||+++|+++..+... ......++++|++++....     .+.|.++|++.....      .....+...+..+
T Consensus        73 D~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~------~~s~ep~~kI~t~  146 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD------IDSEEPYLKIPTP  146 (327)
T ss_pred             cceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh------hcccCceEEecCC
Confidence            999999999999999988543 3445667788988877654     477999998754211      1224457778888


Q ss_pred             ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-e-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEE
Q 009373          253 EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT  325 (536)
Q Consensus       253 ~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~  325 (536)
                      .+.++..-|  -++.|++|..||.|.+||+++++....- + |...|+.+.  ++..++++++ |.+-++||..+-+.+.
T Consensus       147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K  226 (327)
T KOG0643|consen  147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK  226 (327)
T ss_pred             ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence            899999999  6789999999999999999998655443 3 888999887  8899999999 9999999999999999


Q ss_pred             EEccccccceEEEEEeCCCCEEEEEcCCCcEEEE--EcccCccccc------cceeeeccCCCCCeEEEEEcC--CeEEE
Q 009373          326 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY--EIINDCTEAN------VLLVATWIPHTGPVNSLAFEF--PWLVS  395 (536)
Q Consensus       326 ~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw--d~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~--~~l~s  395 (536)
                      ++.  ...++++.+++|....++.|+.....-|=  +.+.++-+..      .+.+...++|-++|++++|+|  ...++
T Consensus       227 ty~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsS  304 (327)
T KOG0643|consen  227 TYT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSS  304 (327)
T ss_pred             Eee--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccccc
Confidence            985  77899999999988777776543222111  1111111100      145667889999999999998  68899


Q ss_pred             EeCCCcEEEEECCc
Q 009373          396 AAGDGKLSLIDVRK  409 (536)
Q Consensus       396 ~s~dg~i~vwd~~~  409 (536)
                      |+.||.|++.-+..
T Consensus       305 GGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  305 GGEDGYVRLHHFDS  318 (327)
T ss_pred             CCCCceEEEEEecc
Confidence            99999999986653

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.5e-26  Score=216.84  Aligned_cols=234  Identities=22%  Similarity=0.230  Sum_probs=207.8

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccce
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  234 (536)
                      -+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++.++..+.+|+.||.|..+|++....  
T Consensus       215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~--  292 (484)
T KOG0305|consen  215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH--  292 (484)
T ss_pred             cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchh--
Confidence            3489999999999999999999999999999999999999988 9999999999999999999999999999977531  


Q ss_pred             ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecCCEEEEe
Q 009373          235 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDTTVAST  308 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~~l~~~  308 (536)
                                ....+.+|...|..+.|  ++.++++|+.|+.+.|||.....+...+. |...|.+++   ....+||+|
T Consensus       293 ----------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG  362 (484)
T KOG0305|consen  293 ----------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG  362 (484)
T ss_pred             ----------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence                      12247889999999999  88999999999999999997777777666 999999998   456778877


Q ss_pred             c---CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE--EcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          309 S---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       309 ~---d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      +   |+.|++||..+++.+..+.  ..+.|..+.|++..+-|++  |..++.|.||++.+.      ..+..+.+|...|
T Consensus       363 GGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------~~~~~l~gH~~RV  434 (484)
T KOG0305|consen  363 GGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------KLVAELLGHTSRV  434 (484)
T ss_pred             CCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc------ceeeeecCCccee
Confidence            6   7899999999999999884  6789999999999876665  445778999999887      7889999999999


Q ss_pred             EEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          384 NSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      ..++++|  ..+++|+.|.++++|++-.
T Consensus       435 l~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  435 LYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEEEECCCCCEEEEecccCcEEeccccC
Confidence            9999987  6999999999999999865

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.4e-27  Score=206.61  Aligned_cols=235  Identities=20%  Similarity=0.284  Sum_probs=203.2

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ..+.-|.++|.|+.|+.|...||+|+.||.|++|.+.+|.+++.+. +|...|.|++  .|+..+++++.|.++++--+.
T Consensus       257 d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  257 DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence            3556789999999999999999999999999999999999999985 7777666655  788999999999999999987


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe---e
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA---P  300 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~---~  300 (536)
                      +|+             ....+.||++.|+...|  +|..+++++.||+|++|+..+.+|+.++.   ...+|+++-   .
T Consensus       337 SGK-------------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK  403 (508)
T KOG0275|consen  337 SGK-------------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK  403 (508)
T ss_pred             cch-------------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence            764             67778999999999999  88999999999999999999999999987   445677765   3


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccc--cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA--HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      +...++.+. .+++.+.++. |+.++.+..|  ..+...+.+.+|.|.++.+.++|+.++.|.+.++      ..-.++.
T Consensus       404 npeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG------~LE~tl~  476 (508)
T KOG0275|consen  404 NPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG------KLERTLP  476 (508)
T ss_pred             CCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC------ceeeeee
Confidence            455666666 8899999875 6777777644  2446677789999999999999999999999999      6777888


Q ss_pred             CCCCCeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373          378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLID  406 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  406 (536)
                      -|...|..++-+|  +.|++-+.||.+++|.
T Consensus       477 VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  477 VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccccccCcccchhhhhcccchhhhcC
Confidence            8999999999988  7899999999999995

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=4e-25  Score=181.99  Aligned_cols=241  Identities=21%  Similarity=0.241  Sum_probs=194.4

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-----eeeeCCCCceEEEEe----c--CCCEEEEEe-CC
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IASSKPLGCTIRAVA----A--DKKLLVAGG-TD  219 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~----~--~~~~l~sg~-~d  219 (536)
                      +.-+.|.+.|+|.+|+|+|.+++||+.|.+|++--.....+     -..+.-|.+.|..++    |  .+.+|++++ .|
T Consensus        83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            34457999999999999999999999999999976654322     234567888888776    2  244566554 45


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE-EeCCEEEEEecCCeEEEEeCCCceEeEeee---c----
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA-LDLTRIYSGSWDMTVRVWDRALLKCLKVLR---H----  291 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~----  291 (536)
                      ..|++-|..++             .....+.+|++.|.++- |++-.+++|+.|.+|++||++-..++.++.   |    
T Consensus       163 c~iy~tdc~~g-------------~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl  229 (350)
T KOG0641|consen  163 CKIYITDCGRG-------------QGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL  229 (350)
T ss_pred             ceEEEeecCCC-------------CcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence            66666666554             35677889999999884 599999999999999999999998888875   2    


Q ss_pred             -cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc
Q 009373          292 -SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE  367 (536)
Q Consensus       292 -~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~  367 (536)
                       ...|.+++  |.|+++++|. |....+||++.++.++.+. .|...|.++.|+|...++++|+.|..|++-|+...-  
T Consensus       230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl--  306 (350)
T KOG0641|consen  230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL--  306 (350)
T ss_pred             ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeecccch--
Confidence             24566655  9999999999 8999999999999999996 599999999999999999999999999999987652  


Q ss_pred             cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          368 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       368 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      ....++.....|...+..+.|+|  -.+++.+.|.++.+|-+.
T Consensus       307 a~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  307 AHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             hhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            11134455567999999999998  367888999999999764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=3.1e-26  Score=192.60  Aligned_cols=271  Identities=13%  Similarity=0.168  Sum_probs=218.7

Q ss_pred             eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEE
Q 009373          194 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS  268 (536)
Q Consensus       194 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s  268 (536)
                      +.+++|...+.+++  .+|..|++|+.|+++.+|+++...           ........+|.+.|-.++|   +++.|++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r-----------~~~~~~~~gh~~svdql~w~~~~~d~~at   82 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR-----------FRKELVYRGHTDSVDQLCWDPKHPDLFAT   82 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh-----------hhhhhcccCCCcchhhheeCCCCCcceEE
Confidence            34456666666555  789999999999999999987642           2233456789999999999   6689999


Q ss_pred             EecCCeEEEEeCCCceEeEeeec-ccc-EEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC
Q 009373          269 GSWDMTVRVWDRALLKCLKVLRH-SDW-VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  345 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~~-~~~-v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~  345 (536)
                      ++.|++|++||++++++...+.. ... ..+..|+|.++++++ |..|.+.|.++.+......  ....+.-++|+.++.
T Consensus        83 as~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd  160 (313)
T KOG1407|consen   83 ASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSND  160 (313)
T ss_pred             ecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCC
Confidence            99999999999999999998873 333 334559999999999 8999999999988877663  566788899998888


Q ss_pred             EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCcee
Q 009373          346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS  423 (536)
Q Consensus       346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  423 (536)
                      +++.....|+|.|.....-      +++.++.+|.....||.|+|  +++++|+.|-.+.+||+...             
T Consensus       161 ~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL-------------  221 (313)
T KOG1407|consen  161 LFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL-------------  221 (313)
T ss_pred             EEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh-------------
Confidence            8888888899999998766      88999999999999999987  79999999999999999874             


Q ss_pred             eEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCC
Q 009373          424 RVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKG  501 (536)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  501 (536)
                            .+.+.+..+.-+|..++|  ++++||+||+|-.|-|=++++|..+.+.....+           ...++|+|+-
T Consensus       222 ------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~-----------t~tVAWHPk~  284 (313)
T KOG1407|consen  222 ------ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP-----------TFTVAWHPKR  284 (313)
T ss_pred             ------hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC-----------ceeEEecCCC
Confidence                  333445555555655555  566999999999999999999988776544322           3689999999


Q ss_pred             CCcceeEeeccc
Q 009373          502 GRTDQCSVAAKK  513 (536)
Q Consensus       502 ~~~~~~~~~~~~  513 (536)
                      ..||-+..+-.+
T Consensus       285 ~LLAyA~ddk~~  296 (313)
T KOG1407|consen  285 PLLAYACDDKDG  296 (313)
T ss_pred             ceeeEEecCCCC
Confidence            999976554444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.2e-26  Score=207.11  Aligned_cols=236  Identities=16%  Similarity=0.234  Sum_probs=198.7

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~dg~i~vwd~  227 (536)
                      .+.+|.|-.++|+++.|.+++.++++++.|+.+++|++...+...++.+|...|++...  ....+++|+.|.+|+.||+
T Consensus       211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence            57899999999999999999999999999999999999999999999999999999872  3334999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV  305 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l  305 (536)
                      ....             +..++ -..+.+.+|...+..+++|-.|++|++||.++..+.......+.|+++.  +++..+
T Consensus       291 ~k~~-------------C~kt~-l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~l  356 (459)
T KOG0288|consen  291 QKAY-------------CSKTV-LPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLEL  356 (459)
T ss_pred             hhhh-------------eeccc-cccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEE
Confidence            6542             21111 2345566677778889999999999999999999999999777999987  888888


Q ss_pred             EEec-CCcEEEEeCCCCcEEEEEccc---cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          306 ASTS-GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      .+++ |.++.++|+++.+....+...   .....+.+.|+|++.|+++|+.||.|+||++.++      ++...+.....
T Consensus       357 LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg------KlE~~l~~s~s  430 (459)
T KOG0288|consen  357 LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG------KLEKVLSLSTS  430 (459)
T ss_pred             eeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc------eEEEEeccCCC
Confidence            8888 999999999999887776421   2234889999999999999999999999999998      44444443333


Q ss_pred             --CeEEEEEcC--CeEEEEeCCCcEEEE
Q 009373          382 --PVNSLAFEF--PWLVSAAGDGKLSLI  405 (536)
Q Consensus       382 --~v~~l~~~~--~~l~s~s~dg~i~vw  405 (536)
                        .|++++|+|  ..|++++.++.+.+|
T Consensus       431 ~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  431 NAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             CcceEEEEEcCCCchhhcccCCcceEec
Confidence              699999986  799999999999999

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2e-25  Score=211.74  Aligned_cols=264  Identities=24%  Similarity=0.321  Sum_probs=214.5

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373          164 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  241 (536)
Q Consensus       164 v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  241 (536)
                      +.|+ ..+.|+.|. ...|++|+..++........+...++++.  ++|.+|++|..+|.|.|||..+.           
T Consensus       183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-----------  249 (484)
T KOG0305|consen  183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-----------  249 (484)
T ss_pred             hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc-----------
Confidence            4566 455666665 46899999999986555544456666554  88999999999999999998664           


Q ss_pred             cccceEEeeC-CccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEe--ecCCEEEEec-CCcEEE
Q 009373          242 KQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTS-GSDVYI  315 (536)
Q Consensus       242 ~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i  315 (536)
                        .....+.+ |...|-+++|++..+.+|+.|+.|..+|++..+.... +. |...|..+.  +++.++++|+ |+.+.|
T Consensus       250 --k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  250 --KKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI  327 (484)
T ss_pred             --cccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence              35556666 9999999999999999999999999999998776555 44 889999887  8999999999 999999


Q ss_pred             EeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEc--CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCe
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW  392 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  392 (536)
                      ||....+++..+. .|...|.+++|+|- ..+||+|+  .|+.|++||..++      ..+... .-.+.|.+|.|++.+
T Consensus       328 wd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g------~~i~~v-dtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  328 WDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG------ARIDSV-DTGSQVCSLIWSKKY  399 (484)
T ss_pred             ccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC------cEeccc-ccCCceeeEEEcCCC
Confidence            9998888888885 69999999999994 56788864  5999999999988      444433 346789999999743


Q ss_pred             --EEEE--eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373          393 --LVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       393 --l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~  466 (536)
                        |+++  ..++.|.||+..+.                   .....+.+|...|+.++.+++  .+++|+.|.++++|++
T Consensus       400 kEi~sthG~s~n~i~lw~~ps~-------------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  400 KELLSTHGYSENQITLWKYPSM-------------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CEEEEecCCCCCcEEEEecccc-------------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence              5544  34778999999873                   334567899999988886665  9999999999999999


Q ss_pred             Cch
Q 009373          467 SQA  469 (536)
Q Consensus       467 ~~~  469 (536)
                      -+.
T Consensus       461 f~~  463 (484)
T KOG0305|consen  461 FDE  463 (484)
T ss_pred             cCC
Confidence            875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=6.2e-26  Score=205.50  Aligned_cols=268  Identities=16%  Similarity=0.161  Sum_probs=205.2

Q ss_pred             ccceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCCce----------eeeeCCCCceEEEEe---cCCCEE
Q 009373          148 RYSIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFS----------IASSKPLGCTIRAVA---ADKKLL  213 (536)
Q Consensus       148 ~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~~~----------~~~~~~~~~~v~~~~---~~~~~l  213 (536)
                      +..+....-|.+.|..+.+.|.. .++||++..+.|.|||..+-..          -..+.+|...-..++   .....|
T Consensus       114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L  193 (422)
T KOG0264|consen  114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL  193 (422)
T ss_pred             ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence            44555666799999999999975 5777888999999999864321          124566665444444   345689


Q ss_pred             EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee
Q 009373          214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR  290 (536)
Q Consensus       214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  290 (536)
                      ++|+.|++|.+||+......      .....+...+.+|++.|..++|   +.+.|.+++.|+.+.|||++++ .     
T Consensus       194 ls~~~d~~i~lwdi~~~~~~------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~-----  261 (422)
T KOG0264|consen  194 LSGSDDHTICLWDINAESKE------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T-----  261 (422)
T ss_pred             eeccCCCcEEEEeccccccC------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C-----
Confidence            99999999999999764311      1224567778899999999999   6688999999999999998863 1     


Q ss_pred             ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccc
Q 009373          291 HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       291 ~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                                                    .++.... .+|.+.++|++|+|- +..||||+.|++|.+||+|+..    
T Consensus       262 ------------------------------~~~~~~~-~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~----  306 (422)
T KOG0264|consen  262 ------------------------------SKPSHSV-KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN----  306 (422)
T ss_pred             ------------------------------CCCcccc-cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc----
Confidence                                          0111112 369999999999995 4678999999999999999985    


Q ss_pred             cceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE
Q 009373          370 VLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD  446 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  446 (536)
                       .++.++.+|...|..|.|+|   ..|++++.|+.+.|||+.............     ....+...+-.||...|..++
T Consensus       307 -~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~-----dgppEllF~HgGH~~kV~Dfs  380 (422)
T KOG0264|consen  307 -KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE-----DGPPELLFIHGGHTAKVSDFS  380 (422)
T ss_pred             -cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc-----cCCcceeEEecCccccccccc
Confidence             57899999999999999998   689999999999999998643332211111     011233344568999999999


Q ss_pred             ecCC---EEEEecCCCeEEEEeCCc
Q 009373          447 IGAD---RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       447 ~~~~---~l~sg~~Dg~i~vW~~~~  468 (536)
                      +++.   .++|.++|+.+.||++..
T Consensus       381 Wnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  381 WNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCCCCCeEEEEecCCceEEEeeccc
Confidence            9887   899999999999999874

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.3e-25  Score=200.78  Aligned_cols=246  Identities=23%  Similarity=0.325  Sum_probs=194.6

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee------------------CCCCceEEE--EecCC
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS------------------KPLGCTIRA--VAADK  210 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~------------------~~~~~~v~~--~~~~~  210 (536)
                      .+.+..|.-+|.||+++|++.+.++++.||+|.=|++.+|+....+                  ..|...+++  +++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4677889999999999999999999999999999999888643110                  145555554  45999


Q ss_pred             CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373          211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      ++|++|+.|..|.||+.++..             .+..+.+|.+.|.+++|  ....+++++.|++|++|+++....+.+
T Consensus       215 kylatgg~d~~v~Iw~~~t~e-------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet  281 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLE-------------HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET  281 (479)
T ss_pred             cEEEecCCCceEEEecCcccc-------------hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence            999999999999999998753             56668999999999999  557899999999999999998877776


Q ss_pred             ee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          289 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       289 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +- |++.|.++.  ..++.+.+|+ |.++++|++.....+.  ..++.+.+-|++|-.+ ..+++|+.+|.|.+|++...
T Consensus       282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqli--frg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLI--FRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HhCCccceeeechhcccceEEeccccceeEEEeccccceee--eeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence            55 999999998  5566666665 9999999995443332  2468899999999855 56899999999999999877


Q ss_pred             ccccccce---eeec---cCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccc
Q 009373          365 CTEANVLL---VATW---IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLR  412 (536)
Q Consensus       365 ~~~~~~~~---~~~~---~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~  412 (536)
                      ++......   +...   ..+...|++|+.-|  +++++|+.+|.|++|-+..+.+
T Consensus       359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence            32211100   0000   11223788999876  8999999999999999987643

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=5.9e-24  Score=209.61  Aligned_cols=242  Identities=19%  Similarity=0.236  Sum_probs=182.5

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-------------eeeCCCCceEEEEe--c-CCCEEEEEeCCC
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-------------ASSKPLGCTIRAVA--A-DKKLLVAGGTDG  220 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-------------~~~~~~~~~v~~~~--~-~~~~l~sg~~dg  220 (536)
                      |-..|.....++++..+++++.+..+..|+...+..+             ..+.+|...|.++.  | ++++|++|+.||
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3445556666667677777777777777876544322             13567888888776  5 678999999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY  296 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~  296 (536)
                      +|++||+.++...      .........+.+|...|.+++|+   ++.|++|+.|++|++||+.+++....+. |...|.
T Consensus        99 tIkIWdi~~~~~~------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~  172 (493)
T PTZ00421         99 TIMGWGIPEEGLT------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT  172 (493)
T ss_pred             EEEEEecCCCccc------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence            9999999764210      01123566788999999999994   3689999999999999999999888887 888999


Q ss_pred             EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccc-eEEEEEeCCCCEEEEEc----CCCcEEEEEcccCcccc
Q 009373          297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN-TKSLARSHTGDFLFTGG----EDGAIHMYEIINDCTEA  368 (536)
Q Consensus       297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~tg~----~dg~i~iwd~~~~~~~~  368 (536)
                      +++  +++.+|++++ |+.|++||+++++.+..+. +|.+. +..+.|.+++..+++++    .|+.|++||+++..   
T Consensus       173 sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---  248 (493)
T PTZ00421        173 SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---  248 (493)
T ss_pred             EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---
Confidence            887  7899999988 9999999999999888875 57654 45678899888777654    47899999998763   


Q ss_pred             ccceeeeccCC-CCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcc
Q 009373          369 NVLLVATWIPH-TGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL  410 (536)
Q Consensus       369 ~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~  410 (536)
                        .++.....+ ...+....|++  ++|++++ .|+.|++||+.+.
T Consensus       249 --~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        249 --SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             --CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence              233333323 34455556664  6788777 5999999999875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.2e-24  Score=185.48  Aligned_cols=309  Identities=17%  Similarity=0.167  Sum_probs=205.7

Q ss_pred             hccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-----ee-eeCCCCceEEEEecCCCE-E
Q 009373          141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IA-SSKPLGCTIRAVAADKKL-L  213 (536)
Q Consensus       141 ~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-----~~-~~~~~~~~v~~~~~~~~~-l  213 (536)
                      +..++..+..+.+|+||.+.|++++|+.||++|+|++.|++|++|++.+-..     ++ .+.....+...|+||-.- +
T Consensus        69 ~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~v  148 (420)
T KOG2096|consen   69 KQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVV  148 (420)
T ss_pred             cCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEE
Confidence            3455666777899999999999999999999999999999999999976421     11 122223455677787664 4


Q ss_pred             EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-
Q 009373          214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-  290 (536)
Q Consensus       214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-  290 (536)
                      ++.-...++++|.+.....-.+.... -......-...|.-.|.++-.  ++.+|++++.|..|.+|+++ |+.+..+. 
T Consensus       149 v~~~~g~~l~vyk~~K~~dG~~~~~~-v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt  226 (420)
T KOG2096|consen  149 VSVKRGNKLCVYKLVKKTDGSGSHHF-VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT  226 (420)
T ss_pred             EEEccCCEEEEEEeeecccCCCCccc-ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence            44555667999987543210000000 000111112346667777666  56799999999999999998 88888776 


Q ss_pred             --ccccEEEEeecCCEEEEec-CCcEEEEeCCC---C-----cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          291 --HSDWVYGLAPHDTTVASTS-GSDVYIWDTNS---G-----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       291 --~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~---~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                        ....-.+++|+|+++++++ .-.|++|.+--   |     ..+..+. ||...|..++|+|+...+++.+.||+++||
T Consensus       227 nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriw  305 (420)
T KOG2096|consen  227 NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIW  305 (420)
T ss_pred             ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence              3444556779999999988 88999998632   2     1233343 799999999999999999999999999999


Q ss_pred             EcccCccc-cccceeeec----cCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee
Q 009373          360 EIINDCTE-ANVLLVATW----IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  433 (536)
Q Consensus       360 d~~~~~~~-~~~~~~~~~----~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (536)
                      |..-.-.. +....+.+.    ....+....|+.+| .-+++.+....++++..+++...                +...
T Consensus       306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~----------------~~~e  369 (420)
T KOG2096|consen  306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDY----------------PELE  369 (420)
T ss_pred             eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccc----------------hhHH
Confidence            97533111 111222221    12233334778887 34555556668999998875322                1122


Q ss_pred             eeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          434 MLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       434 ~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      ..++......+++++|.+++|+| |..+++..-..|
T Consensus       370 ~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg  404 (420)
T KOG2096|consen  370 DIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG  404 (420)
T ss_pred             HhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence            23333344444555566999988 678998874443

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.1e-25  Score=184.15  Aligned_cols=250  Identities=18%  Similarity=0.193  Sum_probs=192.6

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeeeCCCCceEEEEe---c-CCCEEEEEeCCCcEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVA---A-DKKLLVAGGTDGFIHC  224 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~---~-~~~~l~sg~~dg~i~v  224 (536)
                      ..-.+|.+.|..+...-.|..|||++.|++|+||.+.+.   +.+.++.+|.+++..+.   | -|.+|++++.||.|.|
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            345689999999888888999999999999999999765   46788999999998876   2 5889999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEee
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAP  300 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  300 (536)
                      |.-+.+.           .........|.+.|++++|.    +-.|++++.||.|.|.+.++..                
T Consensus        85 Wke~~g~-----------w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g----------------  137 (299)
T KOG1332|consen   85 WKEENGR-----------WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG----------------  137 (299)
T ss_pred             EecCCCc-----------hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC----------------
Confidence            9976653           45566677899999999993    3468899999999998875431                


Q ss_pred             cCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCC---C-----------CEEEEEcCCCcEEEEEcccCcc
Q 009373          301 HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT---G-----------DFLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       301 ~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~---~-----------~~l~tg~~dg~i~iwd~~~~~~  366 (536)
                                          +-....+...|.-.|++++|.|.   |           +.|++|+.|..|+||+..++  
T Consensus       138 --------------------~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--  195 (299)
T KOG1332|consen  138 --------------------GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--  195 (299)
T ss_pred             --------------------CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--
Confidence                                00111122357777777777774   3           56999999999999999886  


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                        ....-.++.+|.+-|+.++|.|      .+|+++|.||++.||..+.....++.                ..++....
T Consensus       196 --~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~----------------tll~~f~~  257 (299)
T KOG1332|consen  196 --SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK----------------TLLEEFPD  257 (299)
T ss_pred             --chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc----------------cccccCCc
Confidence              2244556899999999999987      58999999999999987742222211                12233334


Q ss_pred             cEE--EEEecCCEEEEecCCCeEEEEeCCc
Q 009373          441 NLL--SVDIGADRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       441 ~v~--~~~~~~~~l~sg~~Dg~i~vW~~~~  468 (536)
                      .++  +++++|+.|+.++.|+.|.+|.-..
T Consensus       258 ~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  258 VVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             ceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            444  5556788999999999999998654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.5e-25  Score=209.54  Aligned_cols=316  Identities=20%  Similarity=0.281  Sum_probs=238.2

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw  225 (536)
                      +..++.|++.|..+....+++.|+++|.|-+|++|+...+  -+..++..|...|.|++   .+..++++|+.|+.|.+|
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence            6788999999999999999999999999999999999877  67888999999999887   467799999999999999


Q ss_pred             EcccCccceecccCcccccceEEee-CCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--  299 (536)
                      |+.++....   ...........+. |+..+|.+++.++  ..+++|+..+-+++||.++.+.+..+. |.+.|.++.  
T Consensus       146 Din~~~~~l---~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~  222 (735)
T KOG0308|consen  146 DINTGTATL---VASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN  222 (735)
T ss_pred             EccCcchhh---hhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEc
Confidence            999874311   1111112222333 8999999999954  489999999999999999999888887 999999886  


Q ss_pred             ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      .+|+.+++++ ||+|++||+...+++.++. .|...+.++..+|+-..+.+|+.||.|..=|+++..      ....+-.
T Consensus       223 dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~------~~tlick  295 (735)
T KOG0308|consen  223 DDGTRLLSASSDGTIRLWDLGQQRCLATYI-VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA------KSTLICK  295 (735)
T ss_pred             CCCCeEeecCCCceEEeeeccccceeeeEE-eccCceEEEeeCCCcceEEecCCCCcEEecccCCch------hheEeec
Confidence            8898888888 9999999999999999986 699999999999999999999999999999999862      1112223


Q ss_pred             CCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCC------CCCCceeeEEeeCCCeeeecc-ccccEEEEEecC
Q 009373          379 HTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRP------TSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGA  449 (536)
Q Consensus       379 h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  449 (536)
                      ...+|..+..+  .+-+-+++.|+.|+-|..+-.......      ..............+..+.+| +...-.++--+.
T Consensus       296 ~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dk  375 (735)
T KOG0308|consen  296 EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDK  375 (735)
T ss_pred             CCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCc
Confidence            45566666665  344578889999999987643221111      000011111111122222333 222222333344


Q ss_pred             CEEEEecCCCeEEEEeCCchhhHHHHH
Q 009373          450 DRIVCGGEEGIVRIWNFSQAFEIERRA  476 (536)
Q Consensus       450 ~~l~sg~~Dg~i~vW~~~~~~~~~~~~  476 (536)
                      ++++|-...|.+.+||+-....++.+.
T Consensus       376 RhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  376 RHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             ceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            599999999999999999888777654

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=3.4e-23  Score=205.01  Aligned_cols=225  Identities=16%  Similarity=0.168  Sum_probs=172.0

Q ss_pred             EEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373          175 TSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  251 (536)
Q Consensus       175 sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  251 (536)
                      .|+.++.|++|+......+..+.+|...|.++.  |+ +.+|++|+.||+|++||+.++.....     ....+...+.+
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----~i~~p~~~L~g  123 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----EIKDPQCILKG  123 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----ccccceEEeec
Confidence            367789999999988888889999999998776  54 68999999999999999976421100     00123456789


Q ss_pred             CccCEEEEEEe--CC-EEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEE
Q 009373          252 HEGPITSLALD--LT-RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT  325 (536)
Q Consensus       252 h~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~  325 (536)
                      |...|.+++|+  +. .+++++.|++|++||+++++....+.+...|.+++  ++|.+|++++ |+.|++||+++++.+.
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS  203 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence            99999999994  33 46799999999999999998887777778888887  7899999887 8999999999999988


Q ss_pred             EEccccccceEEE-----EEeCCCCEEEEEcCCC----cEEEEEcccCccccccceeee--ccCCCCCeEEEEEc--CCe
Q 009373          326 VVNGAHVGNTKSL-----ARSHTGDFLFTGGEDG----AIHMYEIINDCTEANVLLVAT--WIPHTGPVNSLAFE--FPW  392 (536)
Q Consensus       326 ~~~~~~~~~i~~l-----~~~~~~~~l~tg~~dg----~i~iwd~~~~~~~~~~~~~~~--~~~h~~~v~~l~~~--~~~  392 (536)
                      .+. +|.+.+.+.     .|++++.+|++++.|+    .|+|||++...     .++..  +..+.+.+......  +.+
T Consensus       204 tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----~pl~~~~ld~~~~~L~p~~D~~tg~l  277 (568)
T PTZ00420        204 SFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----SALVTMSIDNASAPLIPHYDESTGLI  277 (568)
T ss_pred             EEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----CceEEEEecCCccceEEeeeCCCCCE
Confidence            875 687754432     3458889999887774    79999998642     23333  22333333333222  358


Q ss_pred             EEEEeCCCcEEEEECCcc
Q 009373          393 LVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       393 l~s~s~dg~i~vwd~~~~  410 (536)
                      +++|+.|+.|++|++...
T Consensus       278 ~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        278 YLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             EEEEECCCeEEEEEccCC
Confidence            889999999999999753

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.4e-23  Score=207.74  Aligned_cols=225  Identities=16%  Similarity=0.217  Sum_probs=168.6

Q ss_pred             cceeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc--------eeeeeCCCCceEEEEe--cCCCE-EEEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGF--------SIASSKPLGCTIRAVA--ADKKL-LVAG  216 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~--------~~~~~~~~~~~v~~~~--~~~~~-l~sg  216 (536)
                      ..+..+.+|.+.|.+++|+|+ +.+|+||+.||+|+|||+.++.        .+..+.+|...|.++.  |++.. |++|
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            357789999999999999997 7899999999999999997642        3345678888776655  76664 5799


Q ss_pred             eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccc
Q 009373          217 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD  293 (536)
Q Consensus       217 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~  293 (536)
                      +.|++|++||+.++.             ....+. |...|.+++|  ++..|++++.|+.|++||+++++.+..+. |.+
T Consensus       145 S~DgtIrIWDl~tg~-------------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g  210 (568)
T PTZ00420        145 GFDSFVNIWDIENEK-------------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDG  210 (568)
T ss_pred             eCCCeEEEEECCCCc-------------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccC
Confidence            999999999997753             223333 5678999999  78899999999999999999999888876 665


Q ss_pred             cEEE-------EeecCCEEEEec-CC----cEEEEeCCC-CcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          294 WVYG-------LAPHDTTVASTS-GS----DVYIWDTNS-GCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       294 ~v~~-------~~~~~~~l~~~~-d~----~i~i~d~~~-~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      .+.+       +.+++.++++++ ++    +|++||++. ++++..+.. .+.+.+......++|.++++|+.|+.|++|
T Consensus       211 ~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~  290 (568)
T PTZ00420        211 GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYY  290 (568)
T ss_pred             CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence            4332       125777777766 53    699999995 556655431 122333333345568899999999999999


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEcCCe
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPW  392 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  392 (536)
                      ++..+.    ...+..+. +..++.+++|.|+.
T Consensus       291 e~~~~~----~~~l~~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        291 QHSLGS----IRKVNEYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             EccCCc----EEeecccc-cCCCccceEEcccc
Confidence            997662    12333333 67788999998843

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-23  Score=180.26  Aligned_cols=277  Identities=15%  Similarity=0.205  Sum_probs=196.2

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeeeCCCCceEEEEe---c-CCCEEEEEeCCCcEEEEE
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA---A-DKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~---~-~~~~l~sg~~dg~i~vwd  226 (536)
                      .+|.+-|.++.|.+.|+.+|||+.|++|+|||..+.    .+....+.|.+.|..+.   | -|+.+++++.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            589999999999999999999999999999997543    45566788999998886   3 388999999999999997


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecC
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHD  302 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~  302 (536)
                      -....    ....+.......++....+.|+++.|    -|-.+++++.||++|||+....-.+....            
T Consensus        90 E~~~~----~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~------------  153 (361)
T KOG2445|consen   90 EQEKS----EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT------------  153 (361)
T ss_pred             ecccc----cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch------------
Confidence            53111    00111234556677788899999999    34578999999999999976543333222            


Q ss_pred             CEEEEecCCcEEEEeCCCCcE-EEEEccccccceEEEEEeCC---CCEEEEEcCC-----CcEEEEEcccCcccccccee
Q 009373          303 TTVASTSGSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHT---GDFLFTGGED-----GAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       303 ~~l~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~---~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~  373 (536)
                                     +...-. +..-...+..+..|+.|+|.   ..+|++|+.+     +.++||......  .+...+
T Consensus       154 ---------------Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kv  216 (361)
T KOG2445|consen  154 ---------------LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKV  216 (361)
T ss_pred             ---------------hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCc--ceeeee
Confidence                           211100 00011235566778889874   3678888876     579999887663  244567


Q ss_pred             eeccCCCCCeEEEEEcC------CeEEEEeCCCcEEEEECCcccccCCC---CCCCceeeEEeeCCCeeeeccccccEEE
Q 009373          374 ATWIPHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRP---TSGKRVSRVIEVEPPQRMLHGFECNLLS  444 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~  444 (536)
                      .++.+|..+|+.|+|.|      ..|++++.|| |+||+++........   ........+  .-.....+.+|.+.|+.
T Consensus       217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l--~v~~vs~~~~H~~~VWr  293 (361)
T KOG2445|consen  217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL--PVEKVSELDDHNGEVWR  293 (361)
T ss_pred             hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc--ceEEeeeccCCCCceEE
Confidence            78889999999999987      4799999999 999999853211100   000000000  01122346788888887


Q ss_pred             EEe--cCCEEEEecCCCeEEEEeCC
Q 009373          445 VDI--GADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       445 ~~~--~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      +.+  .|..|++.|.||+||+|...
T Consensus       294 v~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  294 VRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEEeeeeeEEeecCCCceeeehhhh
Confidence            776  46799999999999999865

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.1e-24  Score=209.10  Aligned_cols=278  Identities=18%  Similarity=0.222  Sum_probs=208.8

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCc----eeeeeCCCCceEE---EE---ecCCCEEEEEeCCCcEEEEEcccC
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGF----SIASSKPLGCTIR---AV---AADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~----~~~~~~~~~~~v~---~~---~~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      ..+|+..++-..++.++. ..++|+.+....    +...+.......+   .+   ..+.++|+|++..|.|.+||+...
T Consensus        42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~  120 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKS  120 (839)
T ss_pred             cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcc
Confidence            445566788777777775 467888775432    2222222111111   11   256789999999999999998542


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe---ecCC
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PHDT  303 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~~~  303 (536)
                                ...+....+..|+..+.++.|   .+.+|++||.||+|++||++..+...++. ....|..+.   ..+.
T Consensus       121 ----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~  190 (839)
T KOG0269|consen  121 ----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN  190 (839)
T ss_pred             ----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc
Confidence                      113355567889999999999   67899999999999999999888877776 666777776   3467


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      .++++. +|.+++||++..........+|.++|.|+.|+|++.+|||||.|+.|+|||+.+...    .+..++ ....+
T Consensus       191 ~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~----~~~~tI-nTiap  265 (839)
T KOG0269|consen  191 KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA----KPKHTI-NTIAP  265 (839)
T ss_pred             eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc----cceeEE-eecce
Confidence            778877 699999999987544443458999999999999999999999999999999987632    222222 23568


Q ss_pred             eEEEEEcC---CeEEEEeC--CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC---CEEEE
Q 009373          383 VNSLAFEF---PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVC  454 (536)
Q Consensus       383 v~~l~~~~---~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s  454 (536)
                      |..+.|-|   .+|++++.  |-.|+|||++.+                  .-+..++..|...+..+.+.+   ..+.+
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s  327 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------YIPYATFLEHTDSVTGIAWDSGDRINLWS  327 (839)
T ss_pred             eeeeeeccCccchhhhhhccccceEEEEeeccc------------------cccceeeeccCccccceeccCCCceeeEe
Confidence            99999987   57888775  788999999875                  455667888999999998866   28999


Q ss_pred             ecCCCeEEEEeCCchhhH
Q 009373          455 GGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       455 g~~Dg~i~vW~~~~~~~~  472 (536)
                      ++.||+|..=.++++...
T Consensus       328 ~sKD~tv~qh~~knat~p  345 (839)
T KOG0269|consen  328 CSKDGTVLQHLFKNATTP  345 (839)
T ss_pred             ecCccHHHHhhhhcccCh
Confidence            999999887666665443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.9e-24  Score=193.86  Aligned_cols=238  Identities=22%  Similarity=0.255  Sum_probs=194.7

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      ++|...|.+++.++||++||+|+.|..|.||+.++.+.++.+.+|...|.++.  .....+++++.|++|++|+++.   
T Consensus       199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~---  275 (479)
T KOG0299|consen  199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ---  275 (479)
T ss_pred             ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH---
Confidence            49999999999999999999999999999999999999999999999998887  4566899999999999999855   


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEE-eCCEEEE-EecCCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEec
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYS-GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS  309 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~  309 (536)
                                ...+.++.+|.+.|.+|.. .-..++| |+.|+++++|++.....+....+.+.+-|++ -+...+++|+
T Consensus       276 ----------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGS  345 (479)
T KOG0299|consen  276 ----------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGS  345 (479)
T ss_pred             ----------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeecc
Confidence                      3466678899999999988 5555555 5599999999996555554455888888888 7778888888


Q ss_pred             -CCcEEEEeCCCCcEEEEEccccc-----------cceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          310 -GSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       310 -d~~i~i~d~~~~~~~~~~~~~~~-----------~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                       +|.|.+|++.+.+++.+...+|.           ..|++++..|..+++++|+.+|.|++|-+..+..  .+.++..+.
T Consensus       346 dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r--~i~~l~~ls  423 (479)
T KOG0299|consen  346 DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR--AINLLYSLS  423 (479)
T ss_pred             CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc--ccceeeecc
Confidence             79999999999999888765442           2789999999999999999999999999988843  234455544


Q ss_pred             CCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECC
Q 009373          378 PHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVR  408 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~  408 (536)
                       -.+-|++|+|++  .++++| +....+--|-..
T Consensus       424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~  456 (479)
T KOG0299|consen  424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL  456 (479)
T ss_pred             -cccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence             678999999964  545544 445555555443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=6.7e-24  Score=190.80  Aligned_cols=241  Identities=19%  Similarity=0.230  Sum_probs=204.9

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      .+.+|+||+..|+.+.|+|+...+++++.|..|+||.............|..+|..++  |.|.+|++++.||+..+.|+
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~  332 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI  332 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence            4689999999999999999999999999999999999998888888899999998876  99999999999999999999


Q ss_pred             ccCccceecccCcccccceEEee--CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  300 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~  300 (536)
                      +++.             ......  ...-.+++.+|  ||..|.+|+.||.|+|||+.++.....|. |.++|.+++  .
T Consensus       333 ~~g~-------------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsE  399 (506)
T KOG0289|consen  333 SSGS-------------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSE  399 (506)
T ss_pred             cCCc-------------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEecc
Confidence            8874             111111  12235888899  77889999999999999999999888887 999999988  6


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      +|-+++++. |+.|++||++.-+...++......++.++.|.+.|.+|+.++.|=.|++++-.+    .++..+..+..|
T Consensus       400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~----k~W~~~~~~~~~  475 (506)
T KOG0289|consen  400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT----KSWTEIKELADH  475 (506)
T ss_pred             CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc----ccceeeehhhhc
Confidence            788898888 678999999999988888655566899999999999999998886666665333    244677888889


Q ss_pred             CCCeEEEEEcC--CeEEEEeCCCcEEEEEC
Q 009373          380 TGPVNSLAFEF--PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       380 ~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  407 (536)
                      .+..+++.|..  .+++++|.|..++++.+
T Consensus       476 sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  476 SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ccccceeeecccceEEeeccchhheEEeec
Confidence            99999999964  79999999999888754

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5.1e-25  Score=193.61  Aligned_cols=274  Identities=18%  Similarity=0.259  Sum_probs=214.4

Q ss_pred             eeCCCCceEEEEe--cCC-CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEec
Q 009373          195 SSKPLGCTIRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW  271 (536)
Q Consensus       195 ~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  271 (536)
                      .+.+|...|.+++  |.. ..+++|+.||.|++||+.+             ..+...+..|.+.|..|+++.+.+++++.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------R~~~~~f~AH~G~V~Gi~v~~~~~~tvgd  127 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------RECIRTFKAHEGLVRGICVTQTSFFTVGD  127 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhh-------------hhhhheeecccCceeeEEecccceEEecC
Confidence            3467888888887  433 5789999999999999965             44788899999999999998899999999


Q ss_pred             CCeEEEEeCCCceEeEeeeccccEEEEee-cCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC-CEEEE
Q 009373          272 DMTVRVWDRALLKCLKVLRHSDWVYGLAP-HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFT  349 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~t  349 (536)
                      |++|+.|.+.. ....++-....+..++. ...-++++++..|.|||.....++..+.. ....|.++.|+|.. ..|++
T Consensus       128 DKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G~Dti~svkfNpvETsILas  205 (433)
T KOG0268|consen  128 DKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW-GADSISSVKFNPVETSILAS  205 (433)
T ss_pred             CcceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeec-CCCceeEEecCCCcchheee
Confidence            99999999865 46666666777777772 23334444467799999999999998865 45679999999976 46777


Q ss_pred             EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          350 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       350 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      |+.|+.|.+||++...+      +.... -...-+.|+|+|  ..+++|+.|..++.+|++..                 
T Consensus       206 ~~sDrsIvLyD~R~~~P------l~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l-----------------  261 (433)
T KOG0268|consen  206 CASDRSIVLYDLRQASP------LKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL-----------------  261 (433)
T ss_pred             eccCCceEEEecccCCc------cceee-eeccccceecCccccceeeccccccceehhhhhh-----------------
Confidence            88999999999999843      32221 133457899998  46888999999999999986                 


Q ss_pred             eCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcc
Q 009373          428 VEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD  505 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  505 (536)
                       ..+.....+|...|+++++++.  -+++||.|.+|+||.+..+..-.        .....+|+ .+.++.||-|...+.
T Consensus       262 -~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd--------iYhtkRMq-~V~~Vk~S~Dskyi~  331 (433)
T KOG0268|consen  262 -SRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD--------IYHTKRMQ-HVFCVKYSMDSKYII  331 (433)
T ss_pred             -cccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchh--------hhhHhhhh-eeeEEEEeccccEEE
Confidence             4555667889999999998765  89999999999999998764322        22222333 578999999999999


Q ss_pred             eeEeecccCCcC
Q 009373          506 QCSVAAKKNPMN  517 (536)
Q Consensus       506 ~~~~~~~~~~~~  517 (536)
                      ++|-+.+.+.+.
T Consensus       332 SGSdd~nvRlWk  343 (433)
T KOG0268|consen  332 SGSDDGNVRLWK  343 (433)
T ss_pred             ecCCCcceeeee
Confidence            988777666554

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=6e-24  Score=201.78  Aligned_cols=232  Identities=19%  Similarity=0.311  Sum_probs=196.5

Q ss_pred             eeeeeCccccEEE-EEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEc
Q 009373          151 IDVLYGHTEAVLT-VFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       151 ~~~l~~h~~~V~~-v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ...+++|.+-|.+ +++.+ ++..+++|+.|++|.+|.+....++.++.+|...|.+++ .....+++||.|.++++|..
T Consensus        50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI  129 (745)
T ss_pred             ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc
Confidence            4678889998888 88876 445799999999999999999999999999999999999 44445899999999999987


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      ..               ....+.+|+.+|.+++. ..+.++|||.|++|++|.-  ++.++++. |.+.|..++  +++.
T Consensus       130 ~~---------------l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~  192 (745)
T KOG0301|consen  130 GE---------------LVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH  192 (745)
T ss_pred             hh---------------hhcccCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC
Confidence            43               45558899999999988 5569999999999999985  77888887 999999998  4445


Q ss_pred             EEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          304 TVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       304 ~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      ++-++.||.|++|++ +|+.+.++. +|..-++++...+++..++++++|++++||+..        .+.+.+.-.+..|
T Consensus       193 flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--------e~~q~I~lPttsi  262 (745)
T KOG0301|consen  193 FLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--------ECVQVITLPTTSI  262 (745)
T ss_pred             eEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecC--------ceEEEEecCccce
Confidence            555555999999999 777777775 799999999988888999999999999999965        3455555556688


Q ss_pred             EEEEEc-CCeEEEEeCCCcEEEEECCc
Q 009373          384 NSLAFE-FPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       384 ~~l~~~-~~~l~s~s~dg~i~vwd~~~  409 (536)
                      +++.+- ..-+++|+.||.|+||....
T Consensus       263 Wsa~~L~NgDIvvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  263 WSAKVLLNGDIVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             EEEEEeeCCCEEEeccCceEEEEEecc
Confidence            888874 57899999999999998763

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.3e-23  Score=196.25  Aligned_cols=297  Identities=18%  Similarity=0.170  Sum_probs=220.4

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCC--EEEEEeCCCcEEEEEc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKK--LLVAGGTDGFIHCWRA  227 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~sg~~dg~i~vwd~  227 (536)
                      ...+.||++.|.||...|.|.+|++|+.||+|+||.+.+|.+++++.-.. ...+++.|.+.  .|+++-... +.+-+.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp  471 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNP  471 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCc
Confidence            45778999999999999999999999999999999999999999875432 23334445443  444444333 656554


Q ss_pred             ccCcc--------ceecc---------------cC-cccccceEEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEE
Q 009373          228 VEVLP--------HLFDI---------------SG-SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVW  278 (536)
Q Consensus       228 ~~~~~--------~~~~~---------------~~-~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iw  278 (536)
                      .-|..        .+...               .. .+....+.....|...|..+.|  .|++|++...+   ..|.|.
T Consensus       472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH  551 (733)
T KOG0650|consen  472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH  551 (733)
T ss_pred             cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence            33310        00000               00 0011123345578899999999  78999887654   578899


Q ss_pred             eCCCceEeEeee-ccccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373          279 DRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  355 (536)
Q Consensus       279 d~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~  355 (536)
                      ++...+....|. ..+.|.++.  |...++++++...|++||+...+.+..+.. ....|..++.+|.|..|+.|+.|+.
T Consensus       552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnli~gs~d~k  630 (733)
T KOG0650|consen  552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNLILGSYDKK  630 (733)
T ss_pred             ecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEecCCCe
Confidence            988776666664 556666666  777899999999999999999887777653 5668999999999999999999999


Q ss_pred             EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee
Q 009373          356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  433 (536)
Q Consensus       356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (536)
                      +..||+.-..     ++.+++.-|...|++++|++  .++++|+.||++.|+--.-.......          ..--+..
T Consensus       631 ~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn----------pliVPlK  695 (733)
T KOG0650|consen  631 MCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN----------PLIVPLK  695 (733)
T ss_pred             eEEEEcccCc-----chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC----------CceEeee
Confidence            9999998764     67888899999999999998  68999999999999864321111000          0122345


Q ss_pred             eecccccc----EEEEEecCC--EEEEecCCCeEEEE
Q 009373          434 MLHGFECN----LLSVDIGAD--RIVCGGEEGIVRIW  464 (536)
Q Consensus       434 ~~~~~~~~----v~~~~~~~~--~l~sg~~Dg~i~vW  464 (536)
                      .+.||...    |+...|++.  +|.|+|.||+|++|
T Consensus       696 ~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  696 RLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            56777766    888888887  99999999999998

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.8e-24  Score=191.67  Aligned_cols=241  Identities=19%  Similarity=0.299  Sum_probs=198.4

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+..+.+|-..|+|+.  .|+.+|++|+.||.|.+|.+..-    .
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----v  156 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----V  156 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee----c
Confidence            57799999999999999999999999999999999999999988888776  78899999999999999997542    1


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE-eC---CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL-DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS  309 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~  309 (536)
                      +........+...+.+|+-+|+++.. .|   .+++|+|.|.++++||+..+..+.++..+..+.++.  |.++.+++|+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt  236 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT  236 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence            22222245678889999999999999 33   589999999999999999999999999888888877  8888888888


Q ss_pred             -CCcEEEEeCCCCc----------------EEEEEcccccc--ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          310 -GSDVYIWDTNSGC----------------LLTVVNGAHVG--NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       310 -d~~i~i~d~~~~~----------------~~~~~~~~~~~--~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                       +|.|.+.++..-.                .+..+ .||.+  .|+|++++-||.+|++|+.||.|.|||+.+.      
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~------  309 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK------  309 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH------
Confidence             8999988775422                23333 36777  9999999999999999999999999999888      


Q ss_pred             ceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCc
Q 009373          371 LLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  409 (536)
                      .+++++....++|+.+.+.|   ..+..-.....+-.|++..
T Consensus       310 Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  310 QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             HHHHHHhhhccccceeEeeccccceecccccCccCCchHhhc
Confidence            67777776788999999954   4444444444555565544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=2.8e-24  Score=185.17  Aligned_cols=247  Identities=16%  Similarity=0.240  Sum_probs=194.4

Q ss_pred             CccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee----CCCCceEEEEecCCCEEEEEeCCCcE
Q 009373          147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLLVAGGTDGFI  222 (536)
Q Consensus       147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~l~sg~~dg~i  222 (536)
                      +...+++|..|.+.|+++.|+|....|++|+.|++|++||.......+.+    ..+.....+++|.|.+|++|..-.++
T Consensus       161 ~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~  240 (430)
T KOG0640|consen  161 RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL  240 (430)
T ss_pred             CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence            34678999999999999999999999999999999999999765332222    22334445566999999999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccc-cEEE
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSD-WVYG  297 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~-~v~~  297 (536)
                      ++||+++-.....          ...-.+|++.|+++.+  .++..++||.||.|++||--+++|+.++.  |.+ .|.+
T Consensus       241 rlYdv~T~Qcfvs----------anPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcS  310 (430)
T KOG0640|consen  241 RLYDVNTYQCFVS----------ANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCS  310 (430)
T ss_pred             eEEeccceeEeee----------cCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeee
Confidence            9999987542111          1123469999999999  77899999999999999999999999987  544 4555


Q ss_pred             Ee--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccc----cccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccc
Q 009373          298 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEAN  369 (536)
Q Consensus       298 ~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~  369 (536)
                      ..  .+++++.+.+ |..+++|.+.+++.+..+..+    ....-+...|+....+++.-.+ .+.+.-||.++...   
T Consensus       311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr---  387 (430)
T KOG0640|consen  311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR---  387 (430)
T ss_pred             EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh---
Confidence            44  7899999888 999999999999999988632    1112234557777787776554 46799999998842   


Q ss_pred             cceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          370 VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                        ....-.+|++.+..+.-+|  .-+++++.|-.+++|--+
T Consensus       388 --~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  388 --VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             --hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence              2222358999999999998  689999999999999644

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.5e-23  Score=187.68  Aligned_cols=283  Identities=15%  Similarity=0.218  Sum_probs=215.3

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCce--EEEEecCCC-EEEEEeCCCcEEEEEcccCcc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCT--IRAVAADKK-LLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~--v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      .++|++|.|+|...+|++|+.|++++||.++..  ..+..+.-...+  ..++.|+|. .+++++.....+.||+++.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            478999999999999999999999999998643  344444433444  456679998 999999999999999988652


Q ss_pred             ceecccCcccccceEEeeCCc-cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEE
Q 009373          233 HLFDISGSEKQNTQFRLWEHE-GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAS  307 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~  307 (536)
                                 ..+..+.++. ..+..+..  ++++|+..+..|.|.+....+++.+..+...+.|..+.  .+++.|++
T Consensus       293 -----------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~  361 (514)
T KOG2055|consen  293 -----------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLA  361 (514)
T ss_pred             -----------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEE
Confidence                       2233333443 23333433  78899999999999999999999999999888888776  66776665


Q ss_pred             ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEE
Q 009373          308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  386 (536)
Q Consensus       308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  386 (536)
                      ++ +|.|.+||++...++.++.....-.-++++.+++|.+||+|+..|.|.|||..+......++++.++..-...|++|
T Consensus       362 ~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl  441 (514)
T KOG2055|consen  362 SGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSL  441 (514)
T ss_pred             EcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeee
Confidence            55 89999999999999998864333345677888999999999999999999987766666668888888888999999


Q ss_pred             EEcC--CeEEEEeC--CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCe
Q 009373          387 AFEF--PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGI  460 (536)
Q Consensus       387 ~~~~--~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~  460 (536)
                      +|++  ..|+.+|.  +..+++-.+.+..--..            ++..    .+.-..|.|++|++  .+||.|..+|.
T Consensus       442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsN------------fP~~----n~~vg~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSN------------FPTS----NTKVGHVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             eeCcchhhhhhhhhccccceEEEeccceeeecc------------CCCC----CCcccceEEEEecCCCceEEeecCCCc
Confidence            9986  56666664  67888888776321110            0111    11224456666665  49999999999


Q ss_pred             EEEEeCC
Q 009373          461 VRIWNFS  467 (536)
Q Consensus       461 i~vW~~~  467 (536)
                      |.+|.+.
T Consensus       506 v~l~kL~  512 (514)
T KOG2055|consen  506 VHLFKLH  512 (514)
T ss_pred             eeeEeec
Confidence            9999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=6.5e-24  Score=194.11  Aligned_cols=270  Identities=20%  Similarity=0.290  Sum_probs=211.1

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeeeCC--CCceEEE--EecCCCEEEEEeCCCcEEEEEcc
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKP--LGCTIRA--VAADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~---~~~~~~~~--~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      .|..-|.++.++...++++||+. |-|+|||+...   ..+..+..  ....+.+  +.+||+.|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            58888999999998999999985 78999999643   22333321  2334443  45999999999999999999997


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      .....           ....+....-...+++.  |.+..+++..||.|.|||+.+...+..+. |.+.+.|+.  .+|.
T Consensus       496 apTpr-----------ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGt  564 (705)
T KOG0639|consen  496 APTPR-----------IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT  564 (705)
T ss_pred             CCCcc-----------hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCc
Confidence            65421           11222222334455555  77889999999999999999999999998 888888887  7899


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      .|.+|+ |++|+.||+++++.+....  ..+.|.++.++|++.+|++|-+++.+-|-.....       .-..+.-|.+.
T Consensus       565 klWTGGlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-------~kyqlhlheSc  635 (705)
T KOG0639|consen  565 KLWTGGLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-------EKYQLHLHESC  635 (705)
T ss_pred             eeecCCCccceeehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCCc-------cceeecccccE
Confidence            999999 9999999999998887753  6789999999999999999999999988887655       23456679999


Q ss_pred             eEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE--EEEecCCEEEEecCC
Q 009373          383 VNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGEE  458 (536)
Q Consensus       383 v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~D  458 (536)
                      |.++.|.  +.++++.+.|.-+..|...-+...+...                    -..+|+  .++++..+++||+.|
T Consensus       636 VLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------------------E~SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  636 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------------------ESSSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             EEEEEecccCceeeecCchhhhhhccCccccceeecc--------------------ccCcceeeeeccCceEEEecCCC
Confidence            9999996  5899999999999999887654433221                    123444  455566699999999


Q ss_pred             CeEEEEeC
Q 009373          459 GIVRIWNF  466 (536)
Q Consensus       459 g~i~vW~~  466 (536)
                      ....||.+
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            99999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=5.6e-23  Score=195.56  Aligned_cols=286  Identities=17%  Similarity=0.229  Sum_probs=214.1

Q ss_pred             eeeeeCccccEEEEEEecC-----------CCEEEEEeCCCcEEEEECCCCc---eeee----------e----------
Q 009373          151 IDVLYGHTEAVLTVFVLAS-----------AKLLFTSGYDSIVRMWHLEDGF---SIAS----------S----------  196 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~-----------~~~l~sgs~dg~v~iwd~~~~~---~~~~----------~----------  196 (536)
                      ...+--|...|+.+.--|.           ...++|++.|++||+|+++.+.   ..+.          .          
T Consensus       362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~  441 (1080)
T KOG1408|consen  362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH  441 (1080)
T ss_pred             eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence            3456678888888876652           1358999999999999997631   1100          0          


Q ss_pred             --------------CC--CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE
Q 009373          197 --------------KP--LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA  260 (536)
Q Consensus       197 --------------~~--~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  260 (536)
                                    -.  .+...++++|++++|++|..-|+++||++..-             .....+..|.+.|.|+.
T Consensus       442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-------------~~~~~~eAHesEilcLe  508 (1080)
T KOG1408|consen  442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-------------EYTCFMEAHESEILCLE  508 (1080)
T ss_pred             hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-------------hhhhheecccceeEEEe
Confidence                          00  12234567799999999999999999999653             35556778999999999


Q ss_pred             E-----eCCEEEEEecCCeEEEEeCCCc-eEeEeee-ccccEEEEe--ecC--CEEEEec-CCcEEEEeCCCCcEEEEEc
Q 009373          261 L-----DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--PHD--TTVASTS-GSDVYIWDTNSGCLLTVVN  328 (536)
Q Consensus       261 ~-----~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~--~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~  328 (536)
                      +     ..++|++++.|+.|.+||.... ..++++. |...|+++.  .+|  ..+++++ |..|.+--.+.......+.
T Consensus       509 yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~  588 (1080)
T KOG1408|consen  509 YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP  588 (1080)
T ss_pred             ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence            9     2367999999999999998643 4456666 899999987  333  3444444 7666543333211112222


Q ss_pred             cc----cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc---CCCCCeEEEEEcC--CeEEEEeCC
Q 009373          329 GA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGD  399 (536)
Q Consensus       329 ~~----~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~d  399 (536)
                      .+    ....++.++..|..+++++++.|..|+|||+.++      +..+.++   +|.+....+..+|  .||++...|
T Consensus       589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg------Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG------KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             ccccccccceEEEeeeCCCcceEEEEecccceEEEecccc------ceeeeecccccCCCceEEEEECCCccEEEEeecC
Confidence            11    2346899999999999999999999999999999      4444444   5777888888877  699999999


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHH
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      .++.++|.-+                   .++...+.||...|+.+.|.++  .|++.+.||.|.||.++....+.-
T Consensus       663 ktl~~~Df~s-------------------gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~m  720 (1080)
T KOG1408|consen  663 KTLCFVDFVS-------------------GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIRM  720 (1080)
T ss_pred             CceEEEEecc-------------------chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhHHH
Confidence            9999999988                   4555667899999999999887  999999999999999998655443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2.7e-23  Score=179.60  Aligned_cols=255  Identities=18%  Similarity=0.231  Sum_probs=197.6

Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee
Q 009373          173 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  250 (536)
Q Consensus       173 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  250 (536)
                      +++.-.+++++      .+.++.+.+|...|+.++.  ....+.+++.|.+.++|.++++.             ++.++.
T Consensus       127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------------CL~~Y~  187 (481)
T KOG0300|consen  127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------------CLATYT  187 (481)
T ss_pred             heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------------ceeeec
Confidence            44444555533      2455667899999988873  34588899999999999998864             888999


Q ss_pred             CCccCEEEEEE--eCCEEEEEecCCeEEEEeC------CCc----------------------------------eEeEe
Q 009373          251 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDR------ALL----------------------------------KCLKV  288 (536)
Q Consensus       251 ~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~------~~~----------------------------------~~~~~  288 (536)
                      ||.+.|+++.|  .+.++++++.|++..||..      ...                                  .++..
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            99999999999  5678899999999999961      110                                  01111


Q ss_pred             ee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          289 LR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       289 ~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +. |...|.+..  ..++.+++++ |.+..+||+++++.+..+. ||....+.++-+|..+++++++.|.+.++||++..
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence            22 444454444  5678888888 9999999999999999885 79999999999999999999999999999999855


Q ss_pred             ccccccceeeeccCCCCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec-cccccE
Q 009373          365 CTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFECNL  442 (536)
Q Consensus       365 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v  442 (536)
                      -     ..+..|.||+..|+++.|. ...+++|+.|.+|+|||+++...+                  ..++. ....+-
T Consensus       347 I-----~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp------------------lATIRtdS~~NR  403 (481)
T KOG0300|consen  347 I-----QSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP------------------LATIRTDSPANR  403 (481)
T ss_pred             c-----ceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc------------------ceeeecCCccce
Confidence            2     5678899999999999997 489999999999999999986322                  11221 222333


Q ss_pred             EEEEecCCEEEEecCCCeEEEEeCCchh
Q 009373          443 LSVDIGADRIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       443 ~~~~~~~~~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      ..++-.+..++.--++..|++||+....
T Consensus       404 vavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  404 VAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             eEeecCCceEEeccCCceEEEEecCCCc
Confidence            4555555578888888999999998643

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.3e-23  Score=199.74  Aligned_cols=237  Identities=18%  Similarity=0.225  Sum_probs=200.8

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec-----CCCEEEEEeCCCcEEEEEccc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA-----DKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      .+-..+|.+++.+|+|.+||+|..-|+++||++..-+....+..|...|.|+..     ..++|++++.|..|+|+|+..
T Consensus       456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence            355678999999999999999999999999999999999999999999999973     356899999999999999865


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE--eC--CEEEEEecCCeEEEEeCCC---ceEeEeee---ccccEEEEe
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL--TRIYSGSWDMTVRVWDRAL---LKCLKVLR---HSDWVYGLA  299 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~i~iwd~~~---~~~~~~~~---~~~~v~~~~  299 (536)
                      .            .....++.+|.+.|+++.|  ++  ..+++++.|+.|.+--.+.   +.....-.   ....++.+.
T Consensus       536 n------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~  603 (1080)
T KOG1408|consen  536 N------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA  603 (1080)
T ss_pred             c------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence            4            4567788999999999999  44  5789999999876543321   22211111   234566666


Q ss_pred             --ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc--ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                        |..++++++. |..|+|||+.+++..+.|+.  +|.+....+...|.|.|+++.+.|.++.++|+.++      +++.
T Consensus       604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg------EcvA  677 (1080)
T KOG1408|consen  604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG------ECVA  677 (1080)
T ss_pred             eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc------hhhh
Confidence              8888888888 99999999999999999975  46677888999999999999999999999999999      8999


Q ss_pred             eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          375 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      .+.||...|+.+.|.+  ++|++.+.||.|.||.+..
T Consensus       678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            9999999999999976  7999999999999999853

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.6e-22  Score=174.62  Aligned_cols=270  Identities=15%  Similarity=0.162  Sum_probs=197.2

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCc
Q 009373          205 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALL  283 (536)
Q Consensus       205 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~  283 (536)
                      .+++.++.|++++.||++++|++...              .......|..++.+.+| +...+++|+.||.|+.+|+.++
T Consensus        20 ~f~~~~~~LLvssWDgslrlYdv~~~--------------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~   85 (323)
T KOG1036|consen   20 KFSPSSSDLLVSSWDGSLRLYDVPAN--------------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG   85 (323)
T ss_pred             EEcCcCCcEEEEeccCcEEEEeccch--------------hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence            44477888999999999999998653              22234468999999999 7789999999999999999999


Q ss_pred             eEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          284 KCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       284 ~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      .....-.|...|.++.  +....+++|+ |++|++||.+.......+.  ....|.++...  |+.|++|+.|..|.+||
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~--g~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDVS--GNRLVVGTSDRKVLIYD  161 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEecc--CCEEEEeecCceEEEEE
Confidence            8888888999999998  5567777888 9999999999866665553  44578887764  78999999999999999


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  438 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (536)
                      +++.....    ...-..-...+.|+++-|  .-.++++-||.|.+=.++......+   -+-..+.+.... .....  
T Consensus       162 LRn~~~~~----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s---kkyaFkCHr~~~-~~~~~--  231 (323)
T KOG1036|consen  162 LRNLDEPF----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS---KKYAFKCHRLSE-KDTEI--  231 (323)
T ss_pred             cccccchh----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh---hceeEEeeeccc-CCceE--
Confidence            99874321    111223456788999877  6788899999998866654311000   000000000000 00011  


Q ss_pred             cccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373          439 ECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       439 ~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                      --+|.+++|++.  .|||||.||.|.+||+.+.+.+.++.+-          ...+..++|+.+|..+|+++....
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~----------~~SI~slsfs~dG~~LAia~sy~y  297 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY----------ETSISSLSFSMDGSLLAIASSYQY  297 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC----------CCceEEEEeccCCCeEEEEechhh
Confidence            134666676665  8999999999999999998777665443          233578999999999999765433

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.9e-22  Score=172.05  Aligned_cols=272  Identities=14%  Similarity=0.145  Sum_probs=202.5

Q ss_pred             eeeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEE
Q 009373          194 ASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG  269 (536)
Q Consensus       194 ~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~  269 (536)
                      +.+......+.+  ++.+|..+++++.|.++++||..++.             ...++..+.-.|..++|  ..+.++.+
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-------------~~~ti~skkyG~~~~~Fth~~~~~i~s   74 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-------------QVKTINSKKYGVDLACFTHHSNTVIHS   74 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-------------eeeEeecccccccEEEEecCCceEEEc
Confidence            334444455555  45889999999999999999997764             55566666667777777  56667766


Q ss_pred             ec--CCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373          270 SW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  343 (536)
Q Consensus       270 s~--dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~  343 (536)
                      +.  |.+|+..++.+.+.++.+. |...|++++  |-+..+++++ |.+|++||++..++...+   +...-..++|+|+
T Consensus        75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l---~~~~~pi~AfDp~  151 (311)
T KOG1446|consen   75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL---NLSGRPIAAFDPE  151 (311)
T ss_pred             cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE---ecCCCcceeECCC
Confidence            65  8999999999999999998 999999987  8888899888 999999999988877766   3334456789999


Q ss_pred             CCEEEEEcCCCcEEEEEcccCccccccceeeecc---CCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373          344 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI---PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS  418 (536)
Q Consensus       344 ~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~  418 (536)
                      |-++|++.....|++||++.-..    .+..++.   +.....+.|.|+|  ++|+.+...+.+++.|.-++........
T Consensus       152 GLifA~~~~~~~IkLyD~Rs~dk----gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~  227 (311)
T KOG1446|consen  152 GLIFALANGSELIKLYDLRSFDK----GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSG  227 (311)
T ss_pred             CcEEEEecCCCeEEEEEecccCC----CCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEee
Confidence            99999999888999999987632    1222222   4577889999986  7999999999999999877643221111


Q ss_pred             CCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccc
Q 009373          419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMS  498 (536)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  498 (536)
                      .          +.    .+....-.++.|+++++++|+.||+|.+|+++++..+........+         ...++.|+
T Consensus       228 ~----------~~----~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~---------~~~~~~fn  284 (311)
T KOG1446|consen  228 Y----------PN----AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG---------PVSCVRFN  284 (311)
T ss_pred             c----------cC----CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC---------CccccccC
Confidence            0          00    0001123456678889999999999999999999888765443111         23566688


Q ss_pred             cCCCCcceeE
Q 009373          499 SKGGRTDQCS  508 (536)
Q Consensus       499 ~~g~~~~~~~  508 (536)
                      |.--+.++++
T Consensus       285 P~~~mf~sa~  294 (311)
T KOG1446|consen  285 PRYAMFVSAS  294 (311)
T ss_pred             CceeeeeecC
Confidence            8887777653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.91  E-value=8.4e-23  Score=192.26  Aligned_cols=289  Identities=19%  Similarity=0.209  Sum_probs=209.7

Q ss_pred             eeeeCccccEEE--EEEecC---CCEEEEEeCCCcEEEEECCCCc------eeeeeCCCCceEEEEe--cCCCEEEEEeC
Q 009373          152 DVLYGHTEAVLT--VFVLAS---AKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--ADKKLLVAGGT  218 (536)
Q Consensus       152 ~~l~~h~~~V~~--v~~~~~---~~~l~sgs~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~--~~~~~l~sg~~  218 (536)
                      .....|.-+|.-  ..|++.   ...|+.+.+||.|.++|.....      .+.....|...|..+.  |....|++++.
T Consensus        41 ~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG  120 (720)
T KOG0321|consen   41 TSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG  120 (720)
T ss_pred             cccccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC
Confidence            333344444443  566653   4589999999999999986542      2456678999999887  66668999999


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce-----------
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-----------  284 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~-----------  284 (536)
                      |.++++||+.+..           ..-...+.||.+.|.+++|   ++..|++|+.||.|.|||++-..           
T Consensus       121 DsT~r~Wdvk~s~-----------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~  189 (720)
T KOG0321|consen  121 DSTIRPWDVKTSR-----------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI  189 (720)
T ss_pred             Cceeeeeeeccce-----------eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence            9999999998754           2223347899999999999   77899999999999999975321           


Q ss_pred             ---------EeEeee--------cccc----EEEEe-ecCCEEEEec--CCcEEEEeCCCCcEEEEEc-------ccc--
Q 009373          285 ---------CLKVLR--------HSDW----VYGLA-PHDTTVASTS--GSDVYIWDTNSGCLLTVVN-------GAH--  331 (536)
Q Consensus       285 ---------~~~~~~--------~~~~----v~~~~-~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~-------~~~--  331 (536)
                               ..+.+.        +...    |+.+. .|...|++++  |+.|+|||++.........       ..|  
T Consensus       190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~sk  269 (720)
T KOG0321|consen  190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSK  269 (720)
T ss_pred             hccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccc
Confidence                     000000        2222    33343 6778888877  8999999999865433221       012  


Q ss_pred             -ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC---e-EEEEEcCCeEEEEeCCCcEEEEE
Q 009373          332 -VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP---V-NSLAFEFPWLVSAAGDGKLSLID  406 (536)
Q Consensus       332 -~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~---v-~~l~~~~~~l~s~s~dg~i~vwd  406 (536)
                       .-.+.++..+..|.+|++.+.|+.|++|++.....    .++..+.++...   | ..+.+++.+|++|+.|...++|.
T Consensus       270 rs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~  345 (720)
T KOG0321|consen  270 RSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV  345 (720)
T ss_pred             ceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence             33678888888899999989999999999988643    344444444321   1 23344568999999999999999


Q ss_pred             CCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeEEEEeCCchhhHH
Q 009373          407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      +.+.                  ..+...+.||...|+++.+.+.   -++|+++|-++++|++..+.+-.
T Consensus       346 vs~~------------------e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~  397 (720)
T KOG0321|consen  346 VSSP------------------EAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI  397 (720)
T ss_pred             ecCc------------------cCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence            9875                  3444567889999998887665   68888999999999998765543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=1.9e-22  Score=172.79  Aligned_cols=218  Identities=22%  Similarity=0.343  Sum_probs=164.9

Q ss_pred             CCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceec-c-cCcccccceEEeeCCccCEEEEEE---eCCEEEE
Q 009373          197 KPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFD-I-SGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS  268 (536)
Q Consensus       197 ~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~-~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s  268 (536)
                      ..|++.|.++.   ..|+++++|+.||.|.+||++.....-.. + .............+|.-.|.++.|   |...+.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45667777666   45889999999999999999764310000 0 000000011123467788999998   8899999


Q ss_pred             EecCCeEEEEeCCCceEeEeeeccccEEEEe--e---cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373          269 GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  342 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~---~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~  342 (536)
                      ++.|.++++||.++.+....+..++.|++-+  |   .--++++|. +-.|++.|+.+|.....+. ||.+.|.++.|+|
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp  198 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSP  198 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEecc
Confidence            9999999999999999999999888887644  2   234566666 7889999999999999985 7999999999999


Q ss_pred             CCCE-EEEEcCCCcEEEEEcccCcc---------ccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcc
Q 009373          343 TGDF-LFTGGEDGAIHMYEIINDCT---------EANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       343 ~~~~-l~tg~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ...+ |++|+.||.|++||++....         ......+.+-..|.+.|++++|.  +.++++++.|..+++|+..++
T Consensus       199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G  278 (397)
T KOG4283|consen  199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG  278 (397)
T ss_pred             CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence            8875 78899999999999976421         01122334466899999999996  489999999999999999887


Q ss_pred             cccCC
Q 009373          411 LRSGR  415 (536)
Q Consensus       411 ~~~~~  415 (536)
                      .....
T Consensus       279 ~ntl~  283 (397)
T KOG4283|consen  279 RNTLR  283 (397)
T ss_pred             ccccc
Confidence            55443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=8.3e-23  Score=184.53  Aligned_cols=241  Identities=19%  Similarity=0.225  Sum_probs=184.0

Q ss_pred             CCCEEEEEeCCCcEEEEEcccCccc--eecccCcc------cccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEE
Q 009373          209 DKKLLVAGGTDGFIHCWRAVEVLPH--LFDISGSE------KQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRV  277 (536)
Q Consensus       209 ~~~~l~sg~~dg~i~vwd~~~~~~~--~~~~~~~~------~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~i  277 (536)
                      .|+++|.|+.|..|.|||+.--...  .+.+....      ..+......+|++.|.+++|+   .+.|++||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            4679999999999999998533211  11111100      011122344799999999994   468999999999999


Q ss_pred             EeCCCceEeEeee-ccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcE-EEEEccccccceEEEEEeCCC-CEEEEE
Q 009373          278 WDRALLKCLKVLR-HSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTG-DFLFTG  350 (536)
Q Consensus       278 wd~~~~~~~~~~~-~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~~-~~l~tg  350 (536)
                      ||+.++++..++. |...|.++.   ..+.++++|+ |++|.+.|.+.... -..+  ...+.|-.++|.|.. ..++++
T Consensus       271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--EeccceEEEEecCCCceeEEEe
Confidence            9999999999999 899999998   4567888888 99999999995322 2222  256789999999865 467888


Q ss_pred             cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc---CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      ..||+|+-+|+|...     .++.++.+|.++|.+|.++   |+++++++.|+.|++|++........            
T Consensus       349 tddG~v~~~D~R~~~-----~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v------------  411 (463)
T KOG0270|consen  349 TDDGTVYYFDIRNPG-----KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV------------  411 (463)
T ss_pred             cCCceEEeeecCCCC-----CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc------------
Confidence            899999999999885     7899999999999999997   58999999999999999975322111            


Q ss_pred             eCCCeeeecccc---ccEEEEEecCC---EEEEecCCCeEEEEeCCchhhHHHHH
Q 009373          428 VEPPQRMLHGFE---CNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRA  476 (536)
Q Consensus       428 ~~~~~~~~~~~~---~~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~~~~  476 (536)
                              ..|.   ....|++++++   .++.||..+.++|||+.++..+.+.+
T Consensus       412 --------~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~kaF  458 (463)
T KOG0270|consen  412 --------KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRKAF  458 (463)
T ss_pred             --------ccccccccceeecccCCCcceEEEecCccceEEEeecccChhHHHhh
Confidence                    1111   12445566665   89999999999999999987776543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.91  E-value=3.4e-22  Score=199.83  Aligned_cols=262  Identities=16%  Similarity=0.166  Sum_probs=206.7

Q ss_pred             CCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC------------------
Q 009373          128 DKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED------------------  189 (536)
Q Consensus       128 ~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~------------------  189 (536)
                      ..+|......+..+.+...=...+.++..|.+.|+|+.|+|||.+||+||+|+.|.||....                  
T Consensus        39 ~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~  118 (942)
T KOG0973|consen   39 IVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVES  118 (942)
T ss_pred             ceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccce
Confidence            34787665544333322222235678889999999999999999999999999999999873                  


Q ss_pred             CceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCE
Q 009373          190 GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTR  265 (536)
Q Consensus       190 ~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~  265 (536)
                      .++...+.+|...|..+.  |++.+|++++.|++|.+||..+.             .....+.+|.+.|..+.||  |++
T Consensus       119 wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-------------~~~~vl~~H~s~VKGvs~DP~Gky  185 (942)
T KOG0973|consen  119 WKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-------------ELLKVLRGHQSLVKGVSWDPIGKY  185 (942)
T ss_pred             eeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-------------eeeeeeecccccccceEECCccCe
Confidence            135677889999998775  88999999999999999998764             4677899999999999995  589


Q ss_pred             EEEEecCCeEEEEeCCCceEeEeee-------ccccEEEEe--ecCCEEEEec--C---CcEEEEeCCCCcEEEEEcccc
Q 009373          266 IYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVYGLA--PHDTTVASTS--G---SDVYIWDTNSGCLLTVVNGAH  331 (536)
Q Consensus       266 l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~--~~~~~l~~~~--d---~~i~i~d~~~~~~~~~~~~~~  331 (536)
                      |++-+.|++|++|++.+..+.+.+.       .......++  |+|.+|++..  +   ..+.|.+-.+-+.-..+. ||
T Consensus       186 ~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv-GH  264 (942)
T KOG0973|consen  186 FASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV-GH  264 (942)
T ss_pred             eeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee-cC
Confidence            9999999999999988877777765       122333443  9999999876  2   458888887777666664 79


Q ss_pred             ccceEEEEEeCC-------------CC----EEEEEcCCCcEEEEEcccCccccccceeee-ccCCCCCeEEEEEcC--C
Q 009373          332 VGNTKSLARSHT-------------GD----FLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF--P  391 (536)
Q Consensus       332 ~~~i~~l~~~~~-------------~~----~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~--~  391 (536)
                      .+++.++.|+|.             +.    .+|+|+.|++|.||.....      +++.. ..-....|..++|+|  -
T Consensus       265 ~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~------RPl~vi~~lf~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  265 SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP------RPLFVIHNLFNKSIVDMSWSPDGF  338 (942)
T ss_pred             CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC------CchhhhhhhhcCceeeeeEcCCCC
Confidence            999999999982             11    6889999999999998666      23222 223467899999985  6


Q ss_pred             eEEEEeCCCcEEEEECCc
Q 009373          392 WLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       392 ~l~s~s~dg~i~vwd~~~  409 (536)
                      .|+++|.||+|.+..++.
T Consensus       339 ~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  339 SLFACSLDGTVALIHFEE  356 (942)
T ss_pred             eEEEEecCCeEEEEEcch
Confidence            899999999999999875

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=9.4e-22  Score=192.81  Aligned_cols=236  Identities=21%  Similarity=0.249  Sum_probs=197.0

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      ++|+.+-+.|+|.|+|.+|++++.||.|++|+.... +...++..++..+.++...++.|++|+.+++|.+|.+.++.  
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~--   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE--   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC--
Confidence            579999999999999999999999999999998766 44444444888999999999999999999999999987663  


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEe
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~  308 (536)
                                 ....+...+-++.++++  +|++++.||.|-.|++-+..+......+. |.++|.++.  |.+++|++.
T Consensus        88 -----------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs  156 (933)
T KOG1274|consen   88 -----------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS  156 (933)
T ss_pred             -----------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence                       12223345678888999  66799999999999999999888877777 999999998  889999998


Q ss_pred             c-CCcEEEEeCCCCcEEEEEcc-------ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec--cC
Q 009373          309 S-GSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IP  378 (536)
Q Consensus       309 ~-d~~i~i~d~~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~  378 (536)
                      + ||.|++||+.++....++..       .....+..++|+|+|..+++.+.|+.|++|+..+..      ....+  ..
T Consensus       157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we------~~f~Lr~~~  230 (933)
T KOG1274|consen  157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE------LQFKLRDKL  230 (933)
T ss_pred             ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce------eheeecccc
Confidence            8 99999999999887666532       113467789999998889999999999999988873      33332  23


Q ss_pred             CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      +...+..++|+|  .|||+++.||.|.|||+++
T Consensus       231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            455599999987  7999999999999999987

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.90  E-value=7.1e-21  Score=184.66  Aligned_cols=341  Identities=15%  Similarity=0.186  Sum_probs=249.6

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ce----eeeeCCCCceEEEEe-cC--CCEEEEEe
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FS----IASSKPLGCTIRAVA-AD--KKLLVAGG  217 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-~~----~~~~~~~~~~v~~~~-~~--~~~l~sg~  217 (536)
                      +|+....++.+|...|.-+..  -|..++++..++.+.||+..++ ..    +...+.....|.++. |.  -+.++.|+
T Consensus       102 rgk~i~~~~~~~~a~v~~l~~--fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs  179 (910)
T KOG1539|consen  102 RGKHIRHTTLLHGAKVHLLLP--FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGS  179 (910)
T ss_pred             ccceEEEEeccccceEEEEee--ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEee
Confidence            466667888899988876643  4899999999999999999874 11    112222333377765 44  35789999


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeeecc-cc
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHS-DW  294 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~  294 (536)
                      ..|.+.+|++++++             .+.++.++.+.|+++.-.+  +.++.|..+|+|.+++++.++.+..+++. +.
T Consensus       180 ~~G~lql~Nvrt~K-------------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~  246 (910)
T KOG1539|consen  180 SQGRLQLWNVRTGK-------------VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGR  246 (910)
T ss_pred             cCCcEEEEEeccCc-------------EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccc
Confidence            99999999998864             7888999999999998855  78999999999999999999999999986 99


Q ss_pred             EEEEe--ecCCEEEE-ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc---
Q 009373          295 VYGLA--PHDTTVAS-TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE---  367 (536)
Q Consensus       295 v~~~~--~~~~~l~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---  367 (536)
                      |++++  .+|+.+.+ +. .|.+.+||++..+.+......|.+.|....|.|....+++++.|..+++|=..++...   
T Consensus       247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~  326 (910)
T KOG1539|consen  247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL  326 (910)
T ss_pred             eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence            99998  55765544 44 5999999999999888888789899999999998889999999988777744311100   


Q ss_pred             ------------------------------------------------------------------cccce---------
Q 009373          368 ------------------------------------------------------------------ANVLL---------  372 (536)
Q Consensus       368 ------------------------------------------------------------------~~~~~---------  372 (536)
                                                                                        ....+         
T Consensus       327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~  406 (910)
T KOG1539|consen  327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA  406 (910)
T ss_pred             eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence                                                                              00000         


Q ss_pred             -----------------eeec-----------------cCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCC
Q 009373          373 -----------------VATW-----------------IPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRP  416 (536)
Q Consensus       373 -----------------~~~~-----------------~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~  416 (536)
                                       ..++                 +.....+++++.+  +++.+.|...|.|-+|++.++....+.
T Consensus       407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf  486 (910)
T KOG1539|consen  407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF  486 (910)
T ss_pred             hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence                             0000                 0011345555554  588888888899999998876433322


Q ss_pred             CCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHH------------------
Q 009373          417 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRA------------------  476 (536)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~------------------  476 (536)
                      .                .-..|...|.+++.++.  .++|++.||.+++||+..........                  
T Consensus       487 ~----------------~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a  550 (910)
T KOG1539|consen  487 G----------------DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA  550 (910)
T ss_pred             c----------------cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence            1                01357788888888775  79999999999999999876322110                  


Q ss_pred             -------------HhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373          477 -------------RALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN  517 (536)
Q Consensus       477 -------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  517 (536)
                                   ...+-.|....+..+.+.++|||||+.+++++.+.+-+.++
T Consensus       551 ~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  551 IALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             hhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                         00111222334677889999999999999999988877665

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-21  Score=178.44  Aligned_cols=279  Identities=19%  Similarity=0.276  Sum_probs=204.7

Q ss_pred             EEeCCC-cEEEEECCCCceeeeeCCCC-ceEEEEe-cCCCEEEEEeC-CCcEEEEEcccCccceecccCcccccceEEee
Q 009373          175 TSGYDS-IVRMWHLEDGFSIASSKPLG-CTIRAVA-ADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  250 (536)
Q Consensus       175 sgs~dg-~v~iwd~~~~~~~~~~~~~~-~~v~~~~-~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  250 (536)
                      +++.|. ++.+||+.+|....++++.. ..-.++. -.+.+++++.. -..+.+|.+....             ......
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~-------------~~~q~~   78 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKD-------------QVVQYI   78 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchh-------------hhhhhc
Confidence            444454 49999999999988887652 2222222 34456666544 4578999885432             111222


Q ss_pred             CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCC-----
Q 009373          251 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTN-----  319 (536)
Q Consensus       251 ~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~-----  319 (536)
                      --.++|.+++-  +|.+|+.|+..|.+++|.+.+|..+..+. |-..|+++.  -++.++++++ ||.|.+|++.     
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a  158 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA  158 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence            34678999988  56677777799999999999999998887 999999987  7889999999 9999999764     


Q ss_pred             ----CCcEEEEEccccccceEEEEEeCCC--CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C
Q 009373          320 ----SGCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P  391 (536)
Q Consensus       320 ----~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~  391 (536)
                          +-+++..+. .|.-+|+.+...+.|  .+|+|+|.|.++++||+..+      ..+.++ ....++.+++.+|  .
T Consensus       159 ~~~~~~~p~~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g------~LLlti-~fp~si~av~lDpae~  230 (476)
T KOG0646|consen  159 DNDHSVKPLHIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG------VLLLTI-TFPSSIKAVALDPAER  230 (476)
T ss_pred             ccCCCccceeeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccc------eeeEEE-ecCCcceeEEEccccc
Confidence                235666675 699999999987754  58999999999999999998      444443 3456889999998  7


Q ss_pred             eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc--cEEEEE--ecCCEEEEecCCCeEEEEeCC
Q 009373          392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVD--IGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       392 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~--~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      .++.|+.+|.|.+.++........   +-..............+.||..  .|++++  .++..|++|+.||.|+|||+.
T Consensus       231 ~~yiGt~~G~I~~~~~~~~~~~~~---~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~  307 (476)
T KOG0646|consen  231 VVYIGTEEGKIFQNLLFKLSGQSA---GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY  307 (476)
T ss_pred             EEEecCCcceEEeeehhcCCcccc---cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence            999999999999999876431110   0001111122334455677776  565555  677799999999999999999


Q ss_pred             chhhHHHHHH
Q 009373          468 QAFEIERRAR  477 (536)
Q Consensus       468 ~~~~~~~~~~  477 (536)
                      +...+++...
T Consensus       308 S~Q~iRtl~~  317 (476)
T KOG0646|consen  308 SKQCIRTLQT  317 (476)
T ss_pred             hHHHHHHHhh
Confidence            9988887763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.7e-21  Score=167.59  Aligned_cols=268  Identities=15%  Similarity=0.186  Sum_probs=188.9

Q ss_pred             ceEEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEE
Q 009373          201 CTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV  277 (536)
Q Consensus       201 ~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~i  277 (536)
                      ...++|+| ...++++||.||+|++|+++...           .........|.++|.+++|  +|..+++|+.|+.+++
T Consensus        30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g-----------~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~   98 (347)
T KOG0647|consen   30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSG-----------QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL   98 (347)
T ss_pred             hheeEeccccCceEEecccCCceEEEEEecCC-----------cccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence            34566677 56677799999999999997631           1111335579999999999  8899999999999999


Q ss_pred             EeCCCceEeEeeeccccEEEEe----ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC
Q 009373          278 WDRALLKCLKVLRHSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE  352 (536)
Q Consensus       278 wd~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~  352 (536)
                      ||+.+++..+.-.|.++|.++.    +.-..|++|+ |.+|+.||++...++.++.  ..+.++++..-  ..+++++..
T Consensus        99 wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~--~pm~vVata  174 (347)
T KOG0647|consen   99 WDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL--YPMAVVATA  174 (347)
T ss_pred             EEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhcc--CceeEEEec
Confidence            9999998777777999999987    3345789999 9999999999999998885  66777777653  467888999


Q ss_pred             CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccc--cCCCCCCCceeeEEee
Q 009373          353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLR--SGRPTSGKRVSRVIEV  428 (536)
Q Consensus       353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~  428 (536)
                      +..|.+|+++++..+.  +.+.  ..-.-.+.||+..  .+..+.|+-+|.+.+..+..+.+  .+.+..++.       
T Consensus       175 ~r~i~vynL~n~~te~--k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~-------  243 (347)
T KOG0647|consen  175 ERHIAVYNLENPPTEF--KRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRS-------  243 (347)
T ss_pred             CCcEEEEEcCCCcchh--hhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEecc-------
Confidence            9999999998773221  1111  1223456777763  45669999999999999887532  111111110       


Q ss_pred             CCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373          429 EPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  506 (536)
Q Consensus       429 ~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  506 (536)
                      ...   ..+.--.|.+++|.+.  .|+|+|.||+..+||-+....+.+....          ...+++..|+.+|...|-
T Consensus       244 ~~~---~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~----------~qpItcc~fn~~G~ifaY  310 (347)
T KOG0647|consen  244 TNS---VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH----------PQPITCCSFNRNGSIFAY  310 (347)
T ss_pred             CCC---CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC----------CCccceeEecCCCCEEEE
Confidence            000   0011123445555554  8999999999999998876555443222          223466777777777765


Q ss_pred             e
Q 009373          507 C  507 (536)
Q Consensus       507 ~  507 (536)
                      +
T Consensus       311 A  311 (347)
T KOG0647|consen  311 A  311 (347)
T ss_pred             E
Confidence            3

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1.6e-20  Score=172.27  Aligned_cols=298  Identities=18%  Similarity=0.246  Sum_probs=214.6

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccce---
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHL---  234 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~---  234 (536)
                      .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++ .....|++|+.|..|..||-.-.+..-   
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~el  325 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETEL  325 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccC
Confidence            5699999999887 78999999999999988888777779999999988 444566779999999999832211100   


Q ss_pred             ------------------------ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373          235 ------------------------FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       235 ------------------------~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                                              +-+.+.-.........+|......++.  +.+.+++++.|+.+++|+  ..+...+
T Consensus       326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt  403 (626)
T KOG2106|consen  326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT  403 (626)
T ss_pred             chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence                                    001111222233445578888888877  567899999999999999  5566666


Q ss_pred             eeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          289 LRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       289 ~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      ....+++.|+.  |.| .++.|. .|...+.|.++...+..-.  ...++++++|+|+|.+||.|+.|+.|+||-+....
T Consensus       404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  404 KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             EEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence            55556666655  888 777777 8999999999966555543  37899999999999999999999999999997764


Q ss_pred             cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCC-------------------CCC-----
Q 009373          366 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRP-------------------TSG-----  419 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-------------------~~~-----  419 (536)
                      .  ....+...  |.++|+.+.|++  ++|.+-+.|-.|..|......+....                   ..+     
T Consensus       481 ~--~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a  556 (626)
T KOG2106|consen  481 R--KYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINA  556 (626)
T ss_pred             c--EEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHH
Confidence            2  12233333  348999999975  79999999999999954432222110                   000     


Q ss_pred             -------------CceeeEE-------eeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373          420 -------------KRVSRVI-------EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       420 -------------~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~  466 (536)
                                   .....+.       .+..+.....+|+..+.+++|..+  .+++.+.|..|..|++
T Consensus       557 ~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  557 VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence                         0000011       122334456788888888887654  7777779999999986

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=5.7e-22  Score=193.30  Aligned_cols=243  Identities=16%  Similarity=0.233  Sum_probs=180.5

Q ss_pred             Eee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC--------------------------------c---------
Q 009373          248 RLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL--------------------------------L---------  283 (536)
Q Consensus       248 ~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~--------------------------------~---------  283 (536)
                      .+. .|.+.|.++.|  +|++||+|+.||.|+||.+..                                .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            344 79999999999  999999999999999997544                                0         


Q ss_pred             -------------------eEeEeee-ccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe
Q 009373          284 -------------------KCLKVLR-HSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS  341 (536)
Q Consensus       284 -------------------~~~~~~~-~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~  341 (536)
                                         +++..+. |.+.|..++ ..+.+|++++ |.+|++|++....++..|.  |..-|+|++|+
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFn  418 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFN  418 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEec
Confidence                               0111111 566677777 4566777777 9999999999999999995  99999999999


Q ss_pred             C-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373          342 H-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTS  418 (536)
Q Consensus       342 ~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~  418 (536)
                      | |.++|++|+-||.|+||++...       .+..+..-..-|++++|.|  .+.+.|+.+|.+++|+....+......-
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~-------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDK-------KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcC-------eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            9 6689999999999999999887       3444445558999999976  7999999999999999886432211100


Q ss_pred             CCceeeEEeeCCCeeeeccccccEEEEEecC---CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc
Q 009373          419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT  495 (536)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (536)
                      .         ....+... |. .|+.+.+.+   +.++..+.|..|||+|..+...+..+......        ......
T Consensus       492 ~---------~~~~Kk~~-~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--------~SQ~~A  552 (712)
T KOG0283|consen  492 R---------LHNKKKKQ-GK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--------SSQISA  552 (712)
T ss_pred             e---------eccCcccc-Cc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC--------Ccceee
Confidence            0         00001111 22 788888753   36888889999999999887777766543332        123567


Q ss_pred             ccccCCCCcceeEeecccCCcCCCcceeecc
Q 009373          496 EMSSKGGRTDQCSVAAKKNPMNGNRRSVWHN  526 (536)
Q Consensus       496 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  526 (536)
                      .|+.||.+|++++-   +..     .++|++
T Consensus       553 sfs~Dgk~IVs~se---Ds~-----VYiW~~  575 (712)
T KOG0283|consen  553 SFSSDGKHIVSASE---DSW-----VYIWKN  575 (712)
T ss_pred             eEccCCCEEEEeec---Cce-----EEEEeC
Confidence            88899999998873   333     377765

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=6.4e-22  Score=179.64  Aligned_cols=265  Identities=19%  Similarity=0.249  Sum_probs=190.7

Q ss_pred             CCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecC
Q 009373          199 LGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD  272 (536)
Q Consensus       199 ~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d  272 (536)
                      |.+.|....   .+...+++++..+.|.|||..........   .....+...+.+|.+.-.+++|   ....|++++.|
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---SGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---cccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            444444332   45678888999999999998654311110   0133456688899998888999   45689999999


Q ss_pred             CeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEc
Q 009373          273 MTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGG  351 (536)
Q Consensus       273 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~  351 (536)
                      ++|++||+......      +.                         .-.+...+ .+|...|..++|++. ..+|++++
T Consensus       200 ~~i~lwdi~~~~~~------~~-------------------------~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  200 HTICLWDINAESKE------DK-------------------------VVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             CcEEEEeccccccC------Cc-------------------------cccceEEe-ecCCcceehhhccccchhhheeec
Confidence            99999998653221      00                         00112223 479999999999995 46888999


Q ss_pred             CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEee
Q 009373          352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV  428 (536)
Q Consensus       352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  428 (536)
                      .|+.+.|||+|++ ..   ++.....+|.+.|+|++|+|   ..||+||.|++|++||+++.                  
T Consensus       248 dd~~L~iwD~R~~-~~---~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL------------------  305 (422)
T KOG0264|consen  248 DDGKLMIWDTRSN-TS---KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL------------------  305 (422)
T ss_pred             CCCeEEEEEcCCC-CC---CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc------------------
Confidence            9999999999963 11   55667789999999999987   68999999999999999986                  


Q ss_pred             CCCeeeeccccccEEEEEecCC---EEEEecCCCeEEEEeCCchhhHHHHHHhhhc----ccchhHHHhhhhccccccCC
Q 009373          429 EPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRARALRG----IRLENRMRRRKLQTEMSSKG  501 (536)
Q Consensus       429 ~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g  501 (536)
                      ..+...+.+|...|+.+.+++.   .|||+|.|+.+.|||+..-.+......+..+    +......+..+....|+|+-
T Consensus       306 ~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e  385 (422)
T KOG0264|consen  306 NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE  385 (422)
T ss_pred             ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence            3355667899999999999886   8999999999999999864443322222222    22344556667888999988


Q ss_pred             CCcceeEeecccCCcCCCcceeeccc
Q 009373          502 GRTDQCSVAAKKNPMNGNRRSVWHNK  527 (536)
Q Consensus       502 ~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (536)
                      ....+ |+ +..|.+     .||...
T Consensus       386 PW~I~-Sv-aeDN~L-----qIW~~s  404 (422)
T KOG0264|consen  386 PWTIA-SV-AEDNIL-----QIWQMA  404 (422)
T ss_pred             CeEEE-Ee-cCCceE-----EEeecc
Confidence            87663 33 333555     666555

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=1.4e-20  Score=161.36  Aligned_cols=279  Identities=20%  Similarity=0.307  Sum_probs=196.7

Q ss_pred             eeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce----------ee-----eeCCCCceEEEEe---cCCCE
Q 009373          152 DVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS----------IA-----SSKPLGCTIRAVA---ADKKL  212 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~----------~~-----~~~~~~~~v~~~~---~~~~~  212 (536)
                      ...+.|.+.|.++...+ .|+++++|+.||.|.+||+++...          +.     .-.+|.-.|....   .|...
T Consensus        37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm  116 (397)
T KOG4283|consen   37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM  116 (397)
T ss_pred             ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence            45567999999999988 589999999999999999976531          00     1123444555544   57789


Q ss_pred             EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-----eCCEEEEEecCCeEEEEeCCCceEeE
Q 009373          213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALLKCLK  287 (536)
Q Consensus       213 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~i~iwd~~~~~~~~  287 (536)
                      +.+++.|.+++|||..+-.             ... .....+.|.+-++     ..-++++|..|-.|++-|+.+|.+.+
T Consensus       117 FtssSFDhtlKVWDtnTlQ-------------~a~-~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH  182 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQ-------------EAV-DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH  182 (397)
T ss_pred             eecccccceEEEeecccce-------------eeE-EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence            9999999999999997753             111 1123445555444     34578889999999999999999999


Q ss_pred             eee-ccccEEEEe--ecCCE-EEEec-CCcEEEEeCCCC-cEEEEE-------------ccccccceEEEEEeCCCCEEE
Q 009373          288 VLR-HSDWVYGLA--PHDTT-VASTS-GSDVYIWDTNSG-CLLTVV-------------NGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       288 ~~~-~~~~v~~~~--~~~~~-l~~~~-d~~i~i~d~~~~-~~~~~~-------------~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      ++. |.+.|.++.  |...+ |++|+ ||.|++||++.. .+...+             ...|.+.++.++|..++.+++
T Consensus       183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~  262 (397)
T KOG4283|consen  183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLA  262 (397)
T ss_pred             eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhh
Confidence            998 999999998  55554 55666 999999999864 222222             246888999999999999999


Q ss_pred             EEcCCCcEEEEEcccCccccccceeeeccCCCCC----eEEEE-EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCcee
Q 009373          349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP----VNSLA-FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS  423 (536)
Q Consensus       349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~----v~~l~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~  423 (536)
                      +++.|..+++|+...+....  ..... ..|...    +. +. .+...++---.++.+.++++-.+             
T Consensus       263 ~~gtd~r~r~wn~~~G~ntl--~~~g~-~~~n~~~~~~~~-~~~~~s~vfv~~p~~~~lall~~~sg-------------  325 (397)
T KOG4283|consen  263 SCGTDDRIRVWNMESGRNTL--REFGP-IIHNQTTSFAVH-IQSMDSDVFVLFPNDGSLALLNLLEG-------------  325 (397)
T ss_pred             hccCccceEEeecccCcccc--ccccc-ccccccccceEE-EeecccceEEEEecCCeEEEEEccCc-------------
Confidence            99999999999998874211  11000 011111    11 11 12233443444577777777653             


Q ss_pred             eEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373          424 RVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~  467 (536)
                            ...+.+.+|...+.+..+.++  ...+|+.|+.|..|-..
T Consensus       326 ------s~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  326 ------SFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             ------eEEEeeecccceeeEEeecCchhhhhccccCCcccccccc
Confidence                  333455666666777777776  78999999999999874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.89  E-value=1.7e-20  Score=172.07  Aligned_cols=312  Identities=15%  Similarity=0.155  Sum_probs=225.4

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee---CC-CCceEEEEec-CCCEEEEEeCCCcEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS---KP-LGCTIRAVAA-DKKLLVAGGTDGFIHC  224 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~---~~-~~~~v~~~~~-~~~~l~sg~~dg~i~v  224 (536)
                      .....+.-++.|....|+|.+..|+.....+.+..|+.+.+...++.   .. ....|+|+.+ .+.-+++|..+|.|.|
T Consensus       192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~I  271 (626)
T KOG2106|consen  192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILI  271 (626)
T ss_pred             ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEE
Confidence            34455556788999999997765555555789999999988655543   22 2356777773 3446889999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEee
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAP  300 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~  300 (536)
                      |+..+..             .......|.+.|.+++. ....|++|+.|+.|..|| ..-+.++..+   ..+.|..+.+
T Consensus       272 w~~~~~~-------------~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  272 WSKGTNR-------------ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             EeCCCce-------------EEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEec
Confidence            9985542             33334489999999999 666778899999999999 3333333333   6678899884


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      .+.-++.|. .+.|..=.++++-.+..+  +|..+...++.+|+.+.++|++.|+.+++|+  ..      ++..+ .--
T Consensus       338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~------k~~wt-~~~  406 (626)
T KOG2106|consen  338 GKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH------KLEWT-KII  406 (626)
T ss_pred             CCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhheeeccCcceEEEcc--CC------ceeEE-EEe
Confidence            433354444 677776677777666665  6999999999999999999999999999999  22      12222 123


Q ss_pred             CCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCC
Q 009373          380 TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE  458 (536)
Q Consensus       380 ~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D  458 (536)
                      ..++.|+.|+| ..++.|...|...|.|.++.....                 .+ ..+...++..++++|.+||.|+.|
T Consensus       407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~-----------------~~-~d~~~ls~v~ysp~G~~lAvgs~d  468 (626)
T KOG2106|consen  407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVT-----------------IH-TDNEQLSVVRYSPDGAFLAVGSHD  468 (626)
T ss_pred             cCceeEeeccCcceEEEeeccceEEEEecccceeEE-----------------EE-ecCCceEEEEEcCCCCEEEEecCC
Confidence            56889999987 699999999999999998721110                 00 113335667777888899999999


Q ss_pred             CeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373          459 GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       459 g~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                      +.|++|.++.+.....+....++        ..++.++||+|+..+.+-+.+..
T Consensus       469 ~~iyiy~Vs~~g~~y~r~~k~~g--------s~ithLDwS~Ds~~~~~~S~d~e  514 (626)
T KOG2106|consen  469 NHIYIYRVSANGRKYSRVGKCSG--------SPITHLDWSSDSQFLVSNSGDYE  514 (626)
T ss_pred             CeEEEEEECCCCcEEEEeeeecC--------ceeEEeeecCCCceEEeccCceE
Confidence            99999999976544333222222        34678999999999998665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=3e-20  Score=176.61  Aligned_cols=266  Identities=14%  Similarity=0.052  Sum_probs=181.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  247 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  247 (536)
                      +++++|++.|+.|++||+.+++.+..+..+.. ...++++++..+ ++++.++.|++||..++.             ...
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-------------~~~   67 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-------------VIG   67 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCc-------------EEE
Confidence            35788999999999999999988888765443 335677888876 567789999999987653             222


Q ss_pred             EeeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeCCCceEeEeeeccccEEEE--eecCCEEEEec-C-CcEEEEeCCC
Q 009373          248 RLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-G-SDVYIWDTNS  320 (536)
Q Consensus       248 ~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d-~~i~i~d~~~  320 (536)
                      .+..+.. +..+++  +++.++ +++.|+.+++||+.+.+.+..+.....+.++  .|++.+++++. + ..+.+||..+
T Consensus        68 ~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~  146 (300)
T TIGR03866        68 TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT  146 (300)
T ss_pred             eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC
Confidence            2333332 455666  566665 4567899999999998887777644444444  48899998887 4 3577889998


Q ss_pred             CcEEEEEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceeeeccCC-------CCCeEEEEEcC--
Q 009373          321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLAFEF--  390 (536)
Q Consensus       321 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~--  390 (536)
                      ++......  ....+..++|+|++++|+++ ..++.|++||+.++.      .+..+..+       ......++|++  
T Consensus       147 ~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       147 YEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK------VIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             CeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce------eeeeeeecccccccccCCccceEECCCC
Confidence            87766553  33456789999999988654 469999999998873      22222211       11234677875  


Q ss_pred             CeEE-EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEe-cCCCeEEEEeCCc
Q 009373          391 PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG-GEEGIVRIWNFSQ  468 (536)
Q Consensus       391 ~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-~~Dg~i~vW~~~~  468 (536)
                      ++++ +.+.++.|.+||+++.....                  ....++.....++++++++|+++ +.+|.|++||+.+
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~~~~~~------------------~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKTYEVLD------------------YLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCCcEEE------------------EEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            4544 44557789999997642110                  01122323334455566687765 5799999999999


Q ss_pred             hhhHHHH
Q 009373          469 AFEIERR  475 (536)
Q Consensus       469 ~~~~~~~  475 (536)
                      ++.+.+.
T Consensus       281 ~~~~~~~  287 (300)
T TIGR03866       281 LKVIKSI  287 (300)
T ss_pred             CcEEEEE
Confidence            8766544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=1.7e-20  Score=178.50  Aligned_cols=304  Identities=22%  Similarity=0.353  Sum_probs=225.2

Q ss_pred             ceeeeeCccccEEEEEEecCCC---EEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAK---LLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~---~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~v  224 (536)
                      .+.++.||..+|+|+.|.|+..   ++++|+.|+.|.+|.++..  .++.++++|...+.|+..........+.|+++.+
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v  125 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSV  125 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEE
Confidence            5678999999999999999877   8999999999999999843  4567778888899988866555555589999999


Q ss_pred             EEcccCccc-----------------------------------eecccC--cccccceEEeeCCccCEEEEEE-----e
Q 009373          225 WRAVEVLPH-----------------------------------LFDISG--SEKQNTQFRLWEHEGPITSLAL-----D  262 (536)
Q Consensus       225 wd~~~~~~~-----------------------------------~~~~~~--~~~~~~~~~~~~h~~~v~~l~~-----~  262 (536)
                      ||.+..+..                                   ...+.+  ..+......+.||.+.|.+++|     +
T Consensus       126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~  205 (764)
T KOG1063|consen  126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD  205 (764)
T ss_pred             eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence            999543310                                   000111  2233566778899999999999     2


Q ss_pred             CCEEEEEecCCeEEEEeCCCce---------------------Ee---E-------ee-eccccEEEEe--ecCCEEEEe
Q 009373          263 LTRIYSGSWDMTVRVWDRALLK---------------------CL---K-------VL-RHSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       263 ~~~l~s~s~dg~i~iwd~~~~~---------------------~~---~-------~~-~~~~~v~~~~--~~~~~l~~~  308 (536)
                      .-+|+++|.|..||||.+.-+.                     ..   .       .+ .|.++|+++.  |.+..|.++
T Consensus       206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA  285 (764)
T KOG1063|consen  206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA  285 (764)
T ss_pred             cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheec
Confidence            3478999999999999753211                     11   1       01 2899999998  666556666


Q ss_pred             c-CCcEEEEeCCCC--cEEEEEc----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          309 S-GSDVYIWDTNSG--CLLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       309 ~-d~~i~i~d~~~~--~~~~~~~----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      + |.++.+|...+.  --+....    .+..+......|+|+++.+++-+.-|..++|...+.   ..........||..
T Consensus       286 SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~---~~w~~~~~iSGH~~  362 (764)
T KOG1063|consen  286 SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK---TFWTQEPVISGHVD  362 (764)
T ss_pred             ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc---cceeeccccccccc
Confidence            6 999999987654  2222221    234556889999999999999999999999983332   23344556789999


Q ss_pred             CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCC
Q 009373          382 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG  459 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg  459 (536)
                      .|..++|+|  .+|++.|.|.+-+++-.-.          +. ..+.++..|+  .|||.....++-..+-.+++|.+..
T Consensus       363 ~V~dv~W~psGeflLsvs~DQTTRlFa~wg----------~q-~~wHEiaRPQ--iHGyDl~c~~~vn~~~~FVSgAdEK  429 (764)
T KOG1063|consen  363 GVKDVDWDPSGEFLLSVSLDQTTRLFARWG----------RQ-QEWHEIARPQ--IHGYDLTCLSFVNEDLQFVSGADEK  429 (764)
T ss_pred             cceeeeecCCCCEEEEeccccceeeecccc----------cc-cceeeecccc--cccccceeeehccCCceeeecccce
Confidence            999999985  8999999999999986441          11 1245555554  5787777666665555999999999


Q ss_pred             eEEEEeCCch
Q 009373          460 IVRIWNFSQA  469 (536)
Q Consensus       460 ~i~vW~~~~~  469 (536)
                      .+|+|+++..
T Consensus       430 VlRvF~aPk~  439 (764)
T KOG1063|consen  430 VLRVFEAPKS  439 (764)
T ss_pred             eeeeecCcHH
Confidence            9999998754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=7.3e-20  Score=173.97  Aligned_cols=278  Identities=18%  Similarity=0.218  Sum_probs=208.1

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCC-CceEEEEe-cCCCEEEEEeCCCcEEEEEccc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPL-GCTIRAVA-ADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~-~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      .+.--..+|.+++|+.+.+.||.+=.||.|-||++..+=. ...++++ ...|-+++ .++..|.+.+.+|.|.-||+.+
T Consensus        20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEeccc
Confidence            3444567899999999999999999999999999987633 3344443 34555555 3588899999999999999977


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe--ecC
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHD  302 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~--~~~  302 (536)
                      ++             +...+....++|.+++.  .++.++.|+.||.+..++...++......   ..+.|.+++  +++
T Consensus       100 lk-------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~  166 (691)
T KOG2048|consen  100 LK-------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG  166 (691)
T ss_pred             Cc-------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence            53             56667777899999999  55789999999988888887777655433   668999998  667


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEc-------cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVN-------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~-------~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                      ..+++|+ ||.|++||..++..+....       .+...-|.++.|-.+ ..|++|..-|+|.+||...+      ..+.
T Consensus       167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g------TLiq  239 (691)
T KOG2048|consen  167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG------TLIQ  239 (691)
T ss_pred             cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc------chhh
Confidence            7788888 9999999999998776221       112335778888755 46899999999999999998      7788


Q ss_pred             eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEE
Q 009373          375 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI  452 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  452 (536)
                      .+..|.+.|.+|+..+  +++++++.|+.|..+...+....+...             ..+  ..|...+-+++.-++.+
T Consensus       240 S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~-------------~~r--~~h~hdvrs~av~~~~l  304 (691)
T KOG2048|consen  240 SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN-------------SRR--DLHAHDVRSMAVIENAL  304 (691)
T ss_pred             hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee-------------ccc--cCCcccceeeeeecceE
Confidence            8899999999999975  799999999999999887653322111             111  22333344444445566


Q ss_pred             EEecCCCeEEEEe
Q 009373          453 VCGGEEGIVRIWN  465 (536)
Q Consensus       453 ~sg~~Dg~i~vW~  465 (536)
                      ++||.|+++.+=.
T Consensus       305 ~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  305 ISGGRDFTLAICS  317 (691)
T ss_pred             EecceeeEEEEcc
Confidence            6666666655533

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=2.3e-21  Score=182.65  Aligned_cols=256  Identities=16%  Similarity=0.182  Sum_probs=185.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee--eCCCCceEEEEe---cCCCEEEEEeCCCcEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA---ADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~---~~~~~l~sg~~dg~i~v  224 (536)
                      .......|...|..+.|.|....|++++.|.++++||+++++....  +.+|.+.+-+++   .+...|++|+.||.|.|
T Consensus        92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence            3567778999999999999777999999999999999999988776  889998886555   46779999999999999


Q ss_pred             EEcccCcccee--------ccc-C-----cccccceEEeeCCcc----CEEEEEE-eCCEEEEEec-CCeEEEEeCCCce
Q 009373          225 WRAVEVLPHLF--------DIS-G-----SEKQNTQFRLWEHEG----PITSLAL-DLTRIYSGSW-DMTVRVWDRALLK  284 (536)
Q Consensus       225 wd~~~~~~~~~--------~~~-~-----~~~~~~~~~~~~h~~----~v~~l~~-~~~~l~s~s~-dg~i~iwd~~~~~  284 (536)
                      ||++......+        ... +     ............|..    .|+.+.| |...|++++. |+.|+|||++...
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            99976542111        000 0     011112222233443    3555677 8899999888 9999999998765


Q ss_pred             EeEeee---------c---cccEEEEe--ecCCEE-EEecCCcEEEEeCCCCc--EEEEEcccccc--ceEEEEEeCCCC
Q 009373          285 CLKVLR---------H---SDWVYGLA--PHDTTV-ASTSGSDVYIWDTNSGC--LLTVVNGAHVG--NTKSLARSHTGD  345 (536)
Q Consensus       285 ~~~~~~---------~---~~~v~~~~--~~~~~l-~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--~i~~l~~~~~~~  345 (536)
                      ......         +   .-.+.++.  ..|.++ |.|.|+.|++||+.+-.  ++..+. ++..  .-..-..+|++.
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~  330 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDC  330 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCc
Confidence            543322         2   12334444  444554 55569999999998743  233332 2211  112234689999


Q ss_pred             EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373          346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      ++++|+.|...++|.+.+..     .....+.+|.-.|++++|.|   .-+++++.|..+++|++..+.
T Consensus       331 ~l~SgSsd~~ayiw~vs~~e-----~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  331 SLLSGSSDEQAYIWVVSSPE-----APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             eEeccCCCcceeeeeecCcc-----CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            99999999999999998875     45566789999999999976   568888999999999996643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=2.7e-21  Score=171.24  Aligned_cols=264  Identities=19%  Similarity=0.273  Sum_probs=190.5

Q ss_pred             CCCCceEEEEe----cCCCEEEEEeCCCcEEEEEcccCccceecc---cCcccccceEEeeCCccCEEEEEEeC---CEE
Q 009373          197 KPLGCTIRAVA----ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI---SGSEKQNTQFRLWEHEGPITSLALDL---TRI  266 (536)
Q Consensus       197 ~~~~~~v~~~~----~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l  266 (536)
                      .+|.+.+..+.    .+..+.++=+..|.|+||++......+-+.   .......+++++.+|.+.=..++|.+   ..|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            34444444432    345577777889999999986543221111   11134568889999999999999944   668


Q ss_pred             EEEecCCeEEEEeCCCceEeEe----eeccccEEEEee---cCCEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEE
Q 009373          267 YSGSWDMTVRVWDRALLKCLKV----LRHSDWVYGLAP---HDTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKS  337 (536)
Q Consensus       267 ~s~s~dg~i~iwd~~~~~~~~~----~~~~~~v~~~~~---~~~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~  337 (536)
                      ++|..-+.|++|...++.-..-    ..|...|-.++.   ....|++|+ |++|+|||++.+. ....+..+|.+.|+.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            8999999999999887653321    228888888873   567888888 9999999999982 222222479999999


Q ss_pred             EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccC
Q 009373          338 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSG  414 (536)
Q Consensus       338 l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~  414 (536)
                      +.|+....+|++|+.||+++|||++.-+..   .++..+.-|..+|++|.|+|   ..|++++.|..|.+||+.......
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e  384 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE  384 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCC---CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence            999998889999999999999999987543   68889999999999999997   689999999999999997532211


Q ss_pred             CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeEEEEe
Q 009373          415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWN  465 (536)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~vW~  465 (536)
                      ... ......+..+.+...+.|.....+-.+++...   ++++.+.|| +.||.
T Consensus       385 e~~-~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  385 EID-QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             hhc-cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence            100 01111133445555566655566667777654   999999999 55554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-20  Score=176.84  Aligned_cols=327  Identities=20%  Similarity=0.260  Sum_probs=233.3

Q ss_pred             cceeeeeCcc-ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009373          149 YSIDVLYGHT-EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       149 ~~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  225 (536)
                      +...+++||. ..|-+++|++ +..|.+.+.+|.|.-||+.+++....+...++++++++  |.+..++.|+.||.+...
T Consensus        59 ~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~  137 (691)
T KOG2048|consen   59 FLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDF  137 (691)
T ss_pred             eeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEE
Confidence            5567777765 5799999994 56688889999999999999999999999999888776  888999999999977777


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---------cccc
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---------HSDW  294 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~~~~  294 (536)
                      +...+.           ......+....+.|.+++|  ++..+++|+.||.|++||..++..+....         ...-
T Consensus       138 s~~p~~-----------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i  206 (691)
T KOG2048|consen  138 SIGPDK-----------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI  206 (691)
T ss_pred             ecCCce-----------EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence            765543           2233445556789999999  45678999999999999999988877332         1223


Q ss_pred             EEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373          295 VYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       295 v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                      |.++. -....+++|. .|+|.+||...+.++..+. .|...|.+++..++++++++++.|+.|.-|...+...  +...
T Consensus       207 VWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--~wv~  283 (691)
T KOG2048|consen  207 VWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--EWVI  283 (691)
T ss_pred             EEEEEEeecCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--ceee
Confidence            45555 4566677776 7999999999999999886 5999999999999999999999999999998877643  2344


Q ss_pred             eeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEE
Q 009373          373 VATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI  452 (536)
Q Consensus       373 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  452 (536)
                      ......|...|.+++..+..+++|+.|..+.+--.+........               +.....+ ..+..+++....+
T Consensus       284 ~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~---------------~~~~~p~-~~~v~~a~~~~L~  347 (691)
T KOG2048|consen  284 NSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHR---------------QKNLFPA-SDRVSVAPENRLL  347 (691)
T ss_pred             eccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhh---------------ccccccc-cceeecCccceEE
Confidence            55566899999999999999999999999988766542111000               0011111 1122333332233


Q ss_pred             EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeE
Q 009373          453 VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS  508 (536)
Q Consensus       453 ~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  508 (536)
                      +.- .+..+.+|.+.+........ ...-..+.-...+...+.+.||+|..|+...
T Consensus       348 ~~w-~~h~v~lwrlGS~~~~g~~~-~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st  401 (691)
T KOG2048|consen  348 VLW-KAHGVDLWRLGSVILQGEYN-YIHLLKLFTKEKENISCAAISPDGNLIAIST  401 (691)
T ss_pred             EEe-ccccccceeccCcccccccC-hhhheeeecCCccceeeeccCCCCCEEEEee
Confidence            322 24456677766542221100 0001111222345577889999999999854

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=163.36  Aligned_cols=288  Identities=18%  Similarity=0.161  Sum_probs=195.2

Q ss_pred             eeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC---CEEEEE
Q 009373          195 SSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSG  269 (536)
Q Consensus       195 ~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~  269 (536)
                      .+.+|...|.++  +.||+.|++++.|++|++|+++.-..     ..   ...+ ...-.-+.-+.+.|.+   ..++++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~e---Hr~~-R~nve~dhpT~V~FapDc~s~vv~~  151 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KE---HRCI-RQNVEYDHPTRVVFAPDCKSVVVSV  151 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hh---hhHh-hccccCCCceEEEECCCcceEEEEE
Confidence            457787777655  58999999999999999999865321     00   0010 0111122455667732   356666


Q ss_pred             ecCCeEEEEeCCCc---eEeEe--------ee--ccccEEEE--eecCCEEEEec-CCcEEEEeCCCCcEEEEEcccccc
Q 009373          270 SWDMTVRVWDRALL---KCLKV--------LR--HSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG  333 (536)
Q Consensus       270 s~dg~i~iwd~~~~---~~~~~--------~~--~~~~v~~~--~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  333 (536)
                      -...++++|.+...   .....        +.  |...+..+  +.++.++++++ |.+|.+|+++ |+.+..+.. ...
T Consensus       152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~  229 (420)
T KOG2096|consen  152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQS  229 (420)
T ss_pred             ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-ccc
Confidence            67778999976422   11111        11  34444443  46788999998 8999999999 888888853 556


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc--cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDC--TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      .-+..+.+|+|+++++++-.--|++|.+--.+  ..++...+..+.||.+.|.+++|++  ..+++.|.||+++|||..-
T Consensus       230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence            66778899999999999998899999974332  2344566788999999999999987  6999999999999999863


Q ss_pred             ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHH
Q 009373          410 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMR  489 (536)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~  489 (536)
                      .-....     ....+.+...+. ...|....-++++|+++.|+... ...++++..++|+...+......+        
T Consensus       310 rY~~~q-----Dpk~Lk~g~~pl-~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~--------  374 (420)
T KOG2096|consen  310 RYEAGQ-----DPKILKEGSAPL-HAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHST--------  374 (420)
T ss_pred             eEecCC-----CchHhhcCCcch-hhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcC--------
Confidence            211100     000001111111 11222333567778888666544 456999999999888877776554        


Q ss_pred             hhhhccccccCCCCcceeEe
Q 009373          490 RRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       490 ~~~~~~~~~~~g~~~~~~~~  509 (536)
                       .+.++.|+++|+.+++|.-
T Consensus       375 -~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  375 -TISSISYSSDGKYIATCGD  393 (420)
T ss_pred             -ceeeEEecCCCcEEeeecc
Confidence             3679999999999999843

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=3.3e-21  Score=177.14  Aligned_cols=257  Identities=18%  Similarity=0.208  Sum_probs=177.1

Q ss_pred             eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373          193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  268 (536)
Q Consensus       193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  268 (536)
                      -..+.+|...|.++.  |.|..|++|+.|.+|++||+.......        .............|.++.|  .++.|++
T Consensus       160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~--------~~fr~l~P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM--------RSFRQLQPCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc--------hhhhccCcccccccceeeecCCCCeEEE
Confidence            344566777777665  889999999999999999996543211        0011111234457888888  7888988


Q ss_pred             EecCCeEEEEeCCCceEeEeee-------------ccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCc-EEEEEc--
Q 009373          269 GSWDMTVRVWDRALLKCLKVLR-------------HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGC-LLTVVN--  328 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~-------------~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~-~~~~~~--  328 (536)
                      .+.....+++|....+......             |...++|.+  |. ...+++++ ||++++||+...+ .+..+.  
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k  311 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK  311 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence            8888999999976554443322             555556555  32 33455555 9999999998754 333333  


Q ss_pred             --cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC--CeEEEEEcC--CeEEEEeCCCcE
Q 009373          329 --GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFEF--PWLVSAAGDGKL  402 (536)
Q Consensus       329 --~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~--~~l~s~s~dg~i  402 (536)
                        .+..-.++.++|+|+|++||+|+.||.|.+|+.......   .....-.+|..  .|+||.|++  ++|++-+.|+++
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~---p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL  388 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR---PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL  388 (641)
T ss_pred             cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc---cceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence              233447899999999999999999999999998655321   22334457877  999999974  899999999999


Q ss_pred             EEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC------CCeEEEEeCCchhhHHH
Q 009373          403 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQAFEIER  474 (536)
Q Consensus       403 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~i~vW~~~~~~~~~~  474 (536)
                      ++||++...+......+              ........-.+++|+..+|+||..      .|++.+||-.+-..+.+
T Consensus       389 KvWDLrq~kkpL~~~tg--------------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k  452 (641)
T KOG0772|consen  389 KVWDLRQFKKPLNVRTG--------------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK  452 (641)
T ss_pred             eeeeccccccchhhhcC--------------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence            99999986544321111              112223344566677778888764      67799999877655543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=6.8e-23  Score=195.47  Aligned_cols=217  Identities=24%  Similarity=0.390  Sum_probs=182.5

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      .+++.+..+-.+++|+...      +..|...+-++.  ..++.+++|+.|-.+.+|.+...             .....
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-------------~~i~S   65 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-------------NAITS   65 (825)
T ss_pred             cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC-------------chhhe
Confidence            3445555566677888653      234555554544  56789999999999999987443             35556


Q ss_pred             eeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCc
Q 009373          249 LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC  322 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~  322 (536)
                      +.+|.++|.++.|  ....|++|+.+|+|++||++.++.++++. |...+.++.  |.+.++++++ |+.+.+||.+...
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            8999999999999  45678999999999999999999888887 888888877  8888998888 9999999999888


Q ss_pred             EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC
Q 009373          323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG  400 (536)
Q Consensus       323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg  400 (536)
                      +...+. +|...+..+.|+|+|.+++.|++|..++|||...+      .....|..|.+.|.++.|+|  -.+++||.|+
T Consensus       146 c~~~~~-s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~  218 (825)
T KOG0267|consen  146 CSHTYK-SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR  218 (825)
T ss_pred             ceeeec-CCcceeEEEeecCCCceeeccCCcceeeeeccccc------ccccccccccccccccccCchhhhhccCCCCc
Confidence            888886 59999999999999999999999999999999988      78889999999999999998  4788999999


Q ss_pred             cEEEEECCccccc
Q 009373          401 KLSLIDVRKLLRS  413 (536)
Q Consensus       401 ~i~vwd~~~~~~~  413 (536)
                      +|++||+++.+..
T Consensus       219 tv~f~dletfe~I  231 (825)
T KOG0267|consen  219 TVRFWDLETFEVI  231 (825)
T ss_pred             eeeeeccceeEEe
Confidence            9999999985433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.7e-20  Score=182.72  Aligned_cols=265  Identities=14%  Similarity=0.133  Sum_probs=201.9

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeC
Q 009373          201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~  280 (536)
                      -+-+++.++|..|++++.||.|++|+.....            .....+..+...|.+++...++|++|+.+++|.+|.+
T Consensus        16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~------------e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDE------------EEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCCceEEeecCCcc------------cCCchhhccCceeEEEeecccceEEeeccceEEEeeC
Confidence            3556777999999999999999999875431            1111222278889999999999999999999999999


Q ss_pred             CCceEe---EeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373          281 ALLKCL---KVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  356 (536)
Q Consensus       281 ~~~~~~---~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i  356 (536)
                      .+++.-   ..+..+..+.++.-+|+++++|+ |-.|++.++.+......+. +|.++|.++.|+|.+++||+.+-||.|
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v  162 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKV  162 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceE
Confidence            887654   34445556666668889999999 7889999999998888886 799999999999999999999999999


Q ss_pred             EEEEcccCccccccceeeeccC-C-CCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373          357 HMYEIINDCTEANVLLVATWIP-H-TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  432 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~~~-h-~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (536)
                      +|||+.++.....+..+..-.. - ...+..++|+|  ..++..+.|+.|++|+..+....+.....             
T Consensus       163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-------------  229 (933)
T KOG1274|consen  163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-------------  229 (933)
T ss_pred             EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-------------
Confidence            9999998843222111111111 1 45667889998  58888899999999999887555433221             


Q ss_pred             eeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCccee
Q 009373          433 RMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  507 (536)
Q Consensus       433 ~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  507 (536)
                        .......++.++|.|.|||+++.||.|.|||+++-   ++           ....+.+.+++|.|++..+...
T Consensus       230 --~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~---~~-----------~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  230 --LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTH---ER-----------HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             --ccccceEEEEEcCCCcEEeeeccCCcEEEEecccc---hh-----------ccccceeEEEecCCCCCeeEEE
Confidence              11112456677778889999999999999999981   11           1234567899999999988764

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=6.5e-22  Score=190.30  Aligned_cols=230  Identities=18%  Similarity=0.264  Sum_probs=185.7

Q ss_pred             EEEEEec-CCCEEEEEeCCCcEEEEECCC---CceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccce
Q 009373          162 LTVFVLA-SAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       162 ~~v~~~~-~~~~l~sgs~dg~v~iwd~~~---~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~  234 (536)
                      ..|.|.. +.++|||++..|.|.+||+..   .+.+..+..|.-.+.++.   ....+|++|+.||+|++||++...   
T Consensus        91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~---  167 (839)
T KOG0269|consen   91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK---  167 (839)
T ss_pred             hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc---
Confidence            3455553 467999999999999999987   556667788888887766   467899999999999999997653   


Q ss_pred             ecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce-EeEeee-ccccEEEEe--ecCCEEEE
Q 009373          235 FDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLA--PHDTTVAS  307 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~--~~~~~l~~  307 (536)
                                ...++.+....|.++.|   .++.|+++.+.|.+.+||++... +...+. |.++|.|+.  |++.+||+
T Consensus       168 ----------S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT  237 (839)
T KOG0269|consen  168 ----------SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT  237 (839)
T ss_pred             ----------ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeee
Confidence                      44556677889999999   66899999999999999998654 444454 999999998  88999999


Q ss_pred             ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEc--CCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      |+ |+.|+|||..+++......-....++.+++|-|... .|++++  .|-.|+|||++-+-     .+..++..|...+
T Consensus       238 GGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY-----IP~~t~~eH~~~v  312 (839)
T KOG0269|consen  238 GGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY-----IPYATFLEHTDSV  312 (839)
T ss_pred             cCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc-----ccceeeeccCccc
Confidence            99 999999999876543322223567899999999875 466655  37789999998773     6788899999999


Q ss_pred             EEEEEcC---CeEEEEeCCCcEEEEECCc
Q 009373          384 NSLAFEF---PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       384 ~~l~~~~---~~l~s~s~dg~i~vwd~~~  409 (536)
                      +.++|..   ..+.+++.||+|..-.+++
T Consensus       313 t~i~W~~~d~~~l~s~sKD~tv~qh~~kn  341 (839)
T KOG0269|consen  313 TGIAWDSGDRINLWSCSKDGTVLQHLFKN  341 (839)
T ss_pred             cceeccCCCceeeEeecCccHHHHhhhhc
Confidence            9999953   7899999999987766554

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.9e-21  Score=162.37  Aligned_cols=236  Identities=19%  Similarity=0.175  Sum_probs=176.0

Q ss_pred             CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e---CCEEEEEec
Q 009373          198 PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D---LTRIYSGSW  271 (536)
Q Consensus       198 ~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~---~~~l~s~s~  271 (536)
                      .|...|....  .-|..|+|++.|++|+|+..+...          ....+.++.||.++|..++| +   |+.|++++.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~----------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY   78 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG----------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY   78 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC----------CceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence            4555554433  568999999999999999987652          23578889999999999999 4   578999999


Q ss_pred             CCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC--CEEEE
Q 009373          272 DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG--DFLFT  349 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~t  349 (536)
                      ||.|.||.-.+++-.+..                                    .. ..|...|++++|.|.+  -.|++
T Consensus        79 DgkVIiWke~~g~w~k~~------------------------------------e~-~~h~~SVNsV~wapheygl~Lac  121 (299)
T KOG1332|consen   79 DGKVIIWKEENGRWTKAY------------------------------------EH-AAHSASVNSVAWAPHEYGLLLAC  121 (299)
T ss_pred             CceEEEEecCCCchhhhh------------------------------------hh-hhhcccceeecccccccceEEEE
Confidence            999999997766322211                                    11 2589999999999864  58999


Q ss_pred             EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC----------------CeEEEEeCCCcEEEEECCccccc
Q 009373          350 GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----------------PWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       350 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----------------~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      ++.||.|.|.+.+....   .........|.-.|++++|.|                ..|++|+.|..|+||+..+..  
T Consensus       122 asSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--  196 (299)
T KOG1332|consen  122 ASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--  196 (299)
T ss_pred             eeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence            99999999999987621   123344568999999999964                369999999999999998741  


Q ss_pred             CCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC------EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhH
Q 009373          414 GRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD------RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENR  487 (536)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~  487 (536)
                                     -...+++.+|...|..+++.|.      +||+++.||+|.||......+..+. ..+.      .
T Consensus       197 ---------------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-tll~------~  254 (299)
T KOG1332|consen  197 ---------------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-TLLE------E  254 (299)
T ss_pred             ---------------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc-cccc------c
Confidence                           1222347889988888776654      8999999999999998843222221 1111      1


Q ss_pred             HHhhhhccccccCCCCccee
Q 009373          488 MRRRKLQTEMSSKGGRTDQC  507 (536)
Q Consensus       488 ~~~~~~~~~~~~~g~~~~~~  507 (536)
                      .....-.+.||+.|..|++.
T Consensus       255 f~~~~w~vSWS~sGn~LaVs  274 (299)
T KOG1332|consen  255 FPDVVWRVSWSLSGNILAVS  274 (299)
T ss_pred             CCcceEEEEEeccccEEEEe
Confidence            23345678999999998864

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.87  E-value=3.3e-21  Score=176.52  Aligned_cols=229  Identities=20%  Similarity=0.301  Sum_probs=189.5

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--eeCC--CCceEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SSKP--LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~~~--~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      ...-|+++.+.|||+.|++|++-.++.|||+.......  .+..  ..+..++++||.+..+++..||.|.|||+..   
T Consensus       464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn---  540 (705)
T KOG0639|consen  464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN---  540 (705)
T ss_pred             cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc---
Confidence            34678899999999999999999999999997654322  2222  3445566679999999999999999999965   


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEe
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~  308 (536)
                                ...+..+.||++.+.||.+  +|..|.+|+-|.+|+.||+++++.+........|.++.  |.+..++.|
T Consensus       541 ----------q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG  610 (705)
T KOG0639|consen  541 ----------QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG  610 (705)
T ss_pred             ----------ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence                      4578899999999999999  78999999999999999999999988888888999887  999999999


Q ss_pred             c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEE
Q 009373          309 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA  387 (536)
Q Consensus       309 ~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  387 (536)
                      - ++.+-|......+... + .-|.+-|.++.|.+.|+++++.+.|..+..|....+.      .+... ...++|.+..
T Consensus       611 Mens~vevlh~skp~kyq-l-hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa------siFqs-kE~SsVlsCD  681 (705)
T KOG0639|consen  611 MENSNVEVLHTSKPEKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA------SIFQS-KESSSVLSCD  681 (705)
T ss_pred             cccCcEEEEecCCcccee-e-cccccEEEEEEecccCceeeecCchhhhhhccCcccc------ceeec-cccCcceeee
Confidence            9 7888887766544333 3 2499999999999999999999999999999987772      33222 2356777777


Q ss_pred             Ec--CCeEEEEeCCCcEEEEEC
Q 009373          388 FE--FPWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       388 ~~--~~~l~s~s~dg~i~vwd~  407 (536)
                      .+  ..+++||+.|....||.+
T Consensus       682 IS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  682 ISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eccCceEEEecCCCcceEEEEE
Confidence            65  589999999999988875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=8e-20  Score=173.94  Aligned_cols=286  Identities=18%  Similarity=0.224  Sum_probs=214.0

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee----eee---CCCCceEEE--EecCCCEEEEEeCCCcEE
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI----ASS---KPLGCTIRA--VAADKKLLVAGGTDGFIH  223 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~----~~~---~~~~~~v~~--~~~~~~~l~sg~~dg~i~  223 (536)
                      .+.||.+-|+++.|+|.+..|+++|.|.++.+|...+..-+    ..+   .+.....+.  +.++++.+++-+..|..+
T Consensus       262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h  341 (764)
T KOG1063|consen  262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH  341 (764)
T ss_pred             hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence            44599999999999999999999999999999998655221    112   222222333  458889999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCc-eEeEeee----ccccEE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALL-KCLKVLR----HSDWVY  296 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~-~~~~~~~----~~~~v~  296 (536)
                      +|.....          ..........||.+.|++++|+  |++|++.|.|.+-|+|-.-.. ..-+.+.    |.-.++
T Consensus       342 lWkt~d~----------~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~  411 (764)
T KOG1063|consen  342 LWKTKDK----------TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT  411 (764)
T ss_pred             EEeccCc----------cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccce
Confidence            9983222          1233445567999999999994  899999999999999865411 1122222    777888


Q ss_pred             EEe--ecCCEEEEecC-CcEEEEeCCC-------------------------------------------CcE----EEE
Q 009373          297 GLA--PHDTTVASTSG-SDVYIWDTNS-------------------------------------------GCL----LTV  326 (536)
Q Consensus       297 ~~~--~~~~~l~~~~d-~~i~i~d~~~-------------------------------------------~~~----~~~  326 (536)
                      |++  +....+++|.| .-+|+|+...                                           |..    ..+
T Consensus       412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et  491 (764)
T KOG1063|consen  412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET  491 (764)
T ss_pred             eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence            888  33566677774 6678887631                                           000    000


Q ss_pred             E----------------------------ccccccceEEEEEeCCCCEEEEEcCCC-----cEEEEEcccCcccccccee
Q 009373          327 V----------------------------NGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       327 ~----------------------------~~~~~~~i~~l~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~  373 (536)
                      .                            ..||...|++++.+|+|+++|+++...     .|++|+..+-      ..+
T Consensus       492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W------~~~  565 (764)
T KOG1063|consen  492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW------LQV  565 (764)
T ss_pred             ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch------hhh
Confidence            0                            027888999999999999999998754     4999998887      567


Q ss_pred             eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-
Q 009373          374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-  450 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-  450 (536)
                      ..+.+|.-.|+.|+|+|  .+|++.|.|.++.+|.........               ........|...|++.+++++ 
T Consensus       566 ~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e---------------~~fa~~k~HtRIIWdcsW~pde  630 (764)
T KOG1063|consen  566 QELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE---------------FRFACLKAHTRIIWDCSWSPDE  630 (764)
T ss_pred             heecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh---------------hhhccccccceEEEEcccCccc
Confidence            78899999999999987  799999999999999986532111               112235778888888888776 


Q ss_pred             -EEEEecCCCeEEEEeCCch
Q 009373          451 -RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       451 -~l~sg~~Dg~i~vW~~~~~  469 (536)
                       +++|+|.|.+|++|.....
T Consensus       631 ~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             ceeEEecCCceEEEEeccCc
Confidence             8999999999999999987

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=7.5e-20  Score=158.43  Aligned_cols=280  Identities=15%  Similarity=0.131  Sum_probs=196.6

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      -.|+.|++.|.+||+|..||.|.|||+.|...-+.+.+|.-+|.+++  ++|+.|+|+|.|..|.+||+..|.       
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-------   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-------   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-------
Confidence            67999999999999999999999999999988888888887776655  999999999999999999997763       


Q ss_pred             CcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee--cc---ccEE---EEeecCCEEEE
Q 009373          239 GSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HS---DWVY---GLAPHDTTVAS  307 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~---~~v~---~~~~~~~~l~~  307 (536)
                            +...+ ...++|....|   +.+..++.-.+..-.+-++..++. ..+.  ..   +.+-   .+.+.|+++++
T Consensus        99 ------~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIit  170 (405)
T KOG1273|consen   99 ------PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIIT  170 (405)
T ss_pred             ------ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEE
Confidence                  22222 34678888888   334555544444455555543221 1111  11   1111   24478999999


Q ss_pred             ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc---cccccceeeeccC--CCC
Q 009373          308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC---TEANVLLVATWIP--HTG  381 (536)
Q Consensus       308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~~~~~~~--h~~  381 (536)
                      |. .|.+.++|..+.+++..+.......|..+.++..|..|+.-+.|..||.|+++.-.   ....+.+.+.+..  ...
T Consensus       171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~  250 (405)
T KOG1273|consen  171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL  250 (405)
T ss_pred             ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence            99 79999999999999988864344789999999999999999999999999987321   1112222222211  112


Q ss_pred             CeEEEEEcC--CeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecCC--EEEEe
Q 009373          382 PVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGAD--RIVCG  455 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~sg  455 (536)
                      .=.++.|++  .|+++++. -..++||.-..                   ....++++|.. .....+.+++-  .+++-
T Consensus       251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~-------------------GsLVKILhG~kgE~l~DV~whp~rp~i~si  311 (405)
T KOG1273|consen  251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSI-------------------GSLVKILHGTKGEELLDVNWHPVRPIIASI  311 (405)
T ss_pred             hhhheeecCCccEEEeccccceeEEEEecCC-------------------cceeeeecCCchhheeecccccceeeeeec
Confidence            234566654  67777664 46799998766                   34556677766 44556666665  55555


Q ss_pred             cCCCeEEEEeCCchhhHHHH
Q 009373          456 GEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       456 ~~Dg~i~vW~~~~~~~~~~~  475 (536)
                       ..|.|++|....-+....+
T Consensus       312 -~sg~v~iw~~~~~enwsaf  330 (405)
T KOG1273|consen  312 -ASGVVYIWAVVQVENWSAF  330 (405)
T ss_pred             -cCCceEEEEeecccchhhc
Confidence             6789999998765544433

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=2.5e-20  Score=168.61  Aligned_cols=223  Identities=17%  Similarity=0.206  Sum_probs=168.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCce---eee------------------eCCCCceEEEEecC---CCEEEEEeCCCcEEEE
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFS---IAS------------------SKPLGCTIRAVAAD---KKLLVAGGTDGFIHCW  225 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~---~~~------------------~~~~~~~v~~~~~~---~~~l~sg~~dg~i~vw  225 (536)
                      |+++|.|+.|..|.|||+.-...   ...                  ..+|+..|.+++.+   .+.|++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            67999999999999999853211   111                  13577777777744   5689999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE-eEeeeccccEEEEe--
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-LKVLRHSDWVYGLA--  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~--  299 (536)
                      |+.+++             +...+..|.+.|.++.|   .+..|++|+.|++|.+.|.+.... -..+...+.|-.+.  
T Consensus       272 D~~~g~-------------p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~  338 (463)
T KOG0270|consen  272 DVDTGK-------------PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWD  338 (463)
T ss_pred             EcCCCC-------------cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEec
Confidence            998875             56667789999999999   568999999999999999985332 23344666676666  


Q ss_pred             ec-CCEEEEec-CCcEEEEeCCCC-cEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          300 PH-DTTVASTS-GSDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       300 ~~-~~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                      +. ...++++. ||.++-+|+|.. +++.++. +|.++|.++++++.- .+++|++.|+.|++|++.....    ..+..
T Consensus       339 ~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~----~~v~~  413 (463)
T KOG0270|consen  339 PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP----KSVKE  413 (463)
T ss_pred             CCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCC----ccccc
Confidence            33 33445555 899999999986 7888886 799999999998754 5789999999999999976632    11111


Q ss_pred             ccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcc
Q 009373          376 WIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       376 ~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~  410 (536)
                      -.-.-+...|.+++|   .+++.|+..+.++|||+.+.
T Consensus       414 ~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  414 HSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             ccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            111123456667765   58889999999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=7.5e-22  Score=188.45  Aligned_cols=221  Identities=27%  Similarity=0.366  Sum_probs=194.9

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      .+.+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|-++.  ++..+|++|+.+|+|++||++
T Consensus        21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle  100 (825)
T KOG0267|consen   21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE  100 (825)
T ss_pred             chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence            356678999999998877889999999999999999988888888999999998876  677899999999999999997


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      ++             ..+.++.+|...+.++.|+  +.++++|+.|+.+++||.+...|...+. |...|..+.  |+|+
T Consensus       101 eA-------------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr  167 (825)
T KOG0267|consen  101 EA-------------KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR  167 (825)
T ss_pred             hh-------------hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence            75             3667899999999999995  4788899999999999999888988888 665555544  9999


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      +++.++ |.++++||+..|+....|. .|.+.+.++.|+|..-++++|+.|+++++||+++-      ..+....+....
T Consensus       168 ~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------e~I~s~~~~~~~  240 (825)
T KOG0267|consen  168 WVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------EVISSGKPETDG  240 (825)
T ss_pred             eeeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeecccee------EEeeccCCccCC
Confidence            999999 6999999999999999996 59999999999999999999999999999999877      566666777889


Q ss_pred             eEEEEEcCC
Q 009373          383 VNSLAFEFP  391 (536)
Q Consensus       383 v~~l~~~~~  391 (536)
                      |.+++|++.
T Consensus       241 v~~~~fn~~  249 (825)
T KOG0267|consen  241 VRSLAFNPD  249 (825)
T ss_pred             ceeeeecCC
Confidence            999999873

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.86  E-value=1.9e-20  Score=176.19  Aligned_cols=144  Identities=18%  Similarity=0.197  Sum_probs=111.1

Q ss_pred             CCcEEEEeCCCC-cEEEEEcc--ccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCccc-cccceeeeccCCCCCeE
Q 009373          310 GSDVYIWDTNSG-CLLTVVNG--AHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTE-ANVLLVATWIPHTGPVN  384 (536)
Q Consensus       310 d~~i~i~d~~~~-~~~~~~~~--~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~  384 (536)
                      .|.|-||+++.. +.......  .....|+.+.|+| |...|+++++||.|++|.+..+... ....+...+.+|...|+
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            566677766542 21111100  1345688999999 5678999999999999999776433 23345667889999999


Q ss_pred             EEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCC
Q 009373          385 SLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEG  459 (536)
Q Consensus       385 ~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg  459 (536)
                      ++.|+|   +.|++++.|.+|++||+.+..                   ....+.||...|++++++++  +++|.+.||
T Consensus       682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~-------------------~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg  742 (1012)
T KOG1445|consen  682 SLRFHPLAADVLAVASYDSTIELWDLANAK-------------------LYSRLVGHTDQIFGIAWSPDGRRIATVCKDG  742 (1012)
T ss_pred             EEEecchhhhHhhhhhccceeeeeehhhhh-------------------hhheeccCcCceeEEEECCCCcceeeeecCc
Confidence            999998   899999999999999999843                   23347899999998887765  999999999


Q ss_pred             eEEEEeCCchhhH
Q 009373          460 IVRIWNFSQAFEI  472 (536)
Q Consensus       460 ~i~vW~~~~~~~~  472 (536)
                      +|++|+...+++.
T Consensus       743 ~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  743 TLRVYEPRSREQP  755 (1012)
T ss_pred             eEEEeCCCCCCCc
Confidence            9999999887654

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=1.4e-19  Score=157.78  Aligned_cols=289  Identities=17%  Similarity=0.205  Sum_probs=204.0

Q ss_pred             ceeeeeCccccEEEEEEec-----CCCEEEEEeCCCcEEEEECCCCc---eeeeeC--CCCceEEE--Ee---c-CCCEE
Q 009373          150 SIDVLYGHTEAVLTVFVLA-----SAKLLFTSGYDSIVRMWHLEDGF---SIASSK--PLGCTIRA--VA---A-DKKLL  213 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~-----~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~--~~~~~v~~--~~---~-~~~~l  213 (536)
                      ..+...+|+.+|..++|++     +...++|.+ ...+.+|......   .++.+.  .+....+.  ++   . ...++
T Consensus        30 t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~l  108 (385)
T KOG1034|consen   30 TNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFL  108 (385)
T ss_pred             eeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeE
Confidence            4456778999999999985     233555555 4678888876433   223221  23333322  22   2 24588


Q ss_pred             EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee
Q 009373          214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR  290 (536)
Q Consensus       214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  290 (536)
                      ++|+.-|.|+|.|+.++.             ....+.+|...|..+.+   ++++++++|.|.+|++|++++..++..+.
T Consensus       109 a~~G~~GvIrVid~~~~~-------------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG  175 (385)
T KOG1034|consen  109 AAGGYLGVIRVIDVVSGQ-------------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG  175 (385)
T ss_pred             EeecceeEEEEEecchhh-------------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec
Confidence            999999999999997653             56678899999999999   56799999999999999999999999986


Q ss_pred             ----ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEE---------------------------ccccccceE
Q 009373          291 ----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVV---------------------------NGAHVGNTK  336 (536)
Q Consensus       291 ----~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~---------------------------~~~~~~~i~  336 (536)
                          |.+.|.++.  .++.++++++ |.++++|++...+....+                           ..-|...|-
T Consensus       176 G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD  255 (385)
T KOG1034|consen  176 GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD  255 (385)
T ss_pred             ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence                999999998  7888999998 999999999843211100                           012444555


Q ss_pred             EEEEeCCCCEEEEEcCCCcEEEEEcc-cCcc-------ccccceeeeccCCCCCeEEEEEc--C--CeEEEEeCCCcEEE
Q 009373          337 SLARSHTGDFLFTGGEDGAIHMYEII-NDCT-------EANVLLVATWIPHTGPVNSLAFE--F--PWLVSAAGDGKLSL  404 (536)
Q Consensus       337 ~l~~~~~~~~l~tg~~dg~i~iwd~~-~~~~-------~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~v  404 (536)
                      |+.|-  |+++++-+-++.|..|..- -...       ......+..+.-....|+-+.|.  +  +.|+.|...|.|++
T Consensus       256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v  333 (385)
T KOG1034|consen  256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV  333 (385)
T ss_pred             HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence            55553  6889999999999999872 2111       11123344555556677777774  4  79999999999999


Q ss_pred             EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373          405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      ||++.......             ........+....-++++-++..|+...+|++|--||.-
T Consensus       334 wdL~~~ep~~~-------------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  334 WDLDNNEPPKC-------------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EECCCCCCccC-------------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            99987533210             011111233444556777777899999999999999853

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=7.9e-21  Score=176.92  Aligned_cols=248  Identities=22%  Similarity=0.306  Sum_probs=189.3

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--------ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--------FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFI  222 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i  222 (536)
                      ++..|.+.|+.+.|+|....|++|+.||++++|+++..        +++.++.+|.++|+|+.  .++..+++|+.||+|
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I  368 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI  368 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence            88899999999999999999999999999999999322        56888999999999887  789999999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEE
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG  297 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~  297 (536)
                      +.|++... ...++  ..........+.||++.|..+++  ..+.|++++.||+++.|+...... .++.   ..+.-.+
T Consensus       369 ~~w~~p~n-~dp~d--s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  369 RCWNLPPN-QDPDD--SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS  444 (577)
T ss_pred             eeeccCCC-CCccc--ccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence            99987622 11111  11223345668899999999999  557899999999999999876555 3333   3333344


Q ss_pred             EeecC-C--E-EEEecCCcEEEEeCCCCcEEEEEccc------cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc
Q 009373          298 LAPHD-T--T-VASTSGSDVYIWDTNSGCLLTVVNGA------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE  367 (536)
Q Consensus       298 ~~~~~-~--~-l~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~  367 (536)
                      ++... +  . +++..-+.-.+++......+..+...      ....+..+..+|.+.+.+++..|+.|+++|..++   
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~---  521 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG---  521 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---
Confidence            54211 1  1 11122344444555555444444321      1235677889999999999999999999999999   


Q ss_pred             cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          368 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       368 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                         .++.....|...+++++++|  .+|++++.|+.+++|.+...
T Consensus       522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence               78888899999999999986  69999999999999998653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.85  E-value=2.9e-19  Score=153.01  Aligned_cols=281  Identities=17%  Similarity=0.156  Sum_probs=200.5

Q ss_pred             CCCcEEEEECCCCce---eeeeCCCCceEEEEe--c-CCCEEEEEeCC-------CcEEEEEcccCccceecccCccccc
Q 009373          178 YDSIVRMWHLEDGFS---IASSKPLGCTIRAVA--A-DKKLLVAGGTD-------GFIHCWRAVEVLPHLFDISGSEKQN  244 (536)
Q Consensus       178 ~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~~--~-~~~~l~sg~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~  244 (536)
                      .|+.|.+-+++.+..   .+.+..+.+.|..++  | +.+.|+++..+       ..+.||.+......    .......
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~----S~~~tlE  113 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ----SNSSTLE  113 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc----cccchhh
Confidence            367888877765432   234566777888776  3 55666666542       23678988654311    1111223


Q ss_pred             ceEEee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeee------ccccEEEEe----ecCCEEEEecC
Q 009373          245 TQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR------HSDWVYGLA----PHDTTVASTSG  310 (536)
Q Consensus       245 ~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~------~~~~v~~~~----~~~~~l~~~~d  310 (536)
                      .+..+. .+-+.|.|+.|  +++.+++-. |..|.+|++..+.. ...+.      +....++-.    .+++.+++.+|
T Consensus       114 ~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d  192 (370)
T KOG1007|consen  114 CVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSD  192 (370)
T ss_pred             HhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCC
Confidence            333343 45568999999  667777665 89999999987665 33332      122222222    36889999999


Q ss_pred             CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc
Q 009373          311 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE  389 (536)
Q Consensus       311 ~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  389 (536)
                      +++..||+++.+....+..+|...+..+.|+|+.+ +|++|+.||.|+|||.+..+     .++.++.+|...|+++.|+
T Consensus       193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-----~pv~el~~HsHWvW~VRfn  267 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-----FPVQELPGHSHWVWAVRFN  267 (370)
T ss_pred             CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-----ccccccCCCceEEEEEEec
Confidence            99999999999999999889999999999999875 68899999999999999875     6789999999999999998


Q ss_pred             C---CeEEEEeCCCcEEEEECCcccccCCCCCCCce---------eeEE-eeCCCeeeeccccccEEEEEecCC---EEE
Q 009373          390 F---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV---------SRVI-EVEPPQRMLHGFECNLLSVDIGAD---RIV  453 (536)
Q Consensus       390 ~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~v~~~~~~~~---~l~  453 (536)
                      |   .++++||.|..|.+|.............+...         .+.. -.......+..|...|.+++++..   .+|
T Consensus       268 ~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA  347 (370)
T KOG1007|consen  268 PEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA  347 (370)
T ss_pred             CccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence            7   68999999999999987653322111111100         0000 112233467889999999999875   899


Q ss_pred             EecCCCeEEEEeCCc
Q 009373          454 CGGEEGIVRIWNFSQ  468 (536)
Q Consensus       454 sg~~Dg~i~vW~~~~  468 (536)
                      +-+.||.+.|=+++.
T Consensus       348 SLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  348 SLSYDGRVIISSVPR  362 (370)
T ss_pred             EeccCceEEeecCCh
Confidence            999999999877764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=2.4e-19  Score=162.87  Aligned_cols=287  Identities=16%  Similarity=0.130  Sum_probs=200.3

Q ss_pred             ceeeeeCccccEEEEEEecCC--CEEEEEeCCCcEEEEECCCC----ceeeeeCCCCceEEEEe---cCCCEEEEEeCCC
Q 009373          150 SIDVLYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA---ADKKLLVAGGTDG  220 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~--~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg  220 (536)
                      ...+.+-|.+.|++++|+|..  +++|+|+.-|.|-+||+.+.    ..+..+.+|..+|.++.   .+...+++.|.||
T Consensus       178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence            456777899999999999975  48999999999999999532    34566788988887765   3566899999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeee-ccccEE
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVY  296 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-~~~~v~  296 (536)
                      +|++-|++...           ...+..+......+.++.|  +...++.+..=|...+||.+++.. ...+. |...|.
T Consensus       258 tiR~~D~~~~i-----------~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  258 TIRLQDFEGNI-----------SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeeeeecchh-----------hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            99999997753           1222333333445666666  455667777777999999998765 33344 777999


Q ss_pred             EEe---ecCCEEEEec-CCcEEEEeCCCCcE-----EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc
Q 009373          297 GLA---PHDTTVASTS-GSDVYIWDTNSGCL-----LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE  367 (536)
Q Consensus       297 ~~~---~~~~~l~~~~-d~~i~i~d~~~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~  367 (536)
                      +++   ....++++++ |++.+|||++.-..     +..+  .|...|.+..|+|++..|+|.+.|..|+|||..--.. 
T Consensus       327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa-  403 (498)
T KOG4328|consen  327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA-  403 (498)
T ss_pred             eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCceEeeccCCceEEeecccccc-
Confidence            998   3466788888 99999999986432     3333  5999999999999998899999999999999841110 


Q ss_pred             cccceeeeccCCCC------CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373          368 ANVLLVATWIPHTG------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  439 (536)
Q Consensus       368 ~~~~~~~~~~~h~~------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (536)
                       ...+..+ ..|..      ......|+|  .++++|-.-..|-|+|-..++.......           +.    ...-
T Consensus       404 -~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-----------P~----~~tI  466 (498)
T KOG4328|consen  404 -KDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-----------PE----SSTI  466 (498)
T ss_pred             -cCCccce-eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-----------cc----cccc
Confidence             0011211 12221      234557777  6888888888899999876432221110           00    0111


Q ss_pred             ccEEEEEecCC-EEEEecCCCeEEEEeCC
Q 009373          440 CNLLSVDIGAD-RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       440 ~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~  467 (536)
                      ..+..+.|-++ .++-|+..|.|+||--+
T Consensus       467 ~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  467 PSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ccceeecccccceeccCCccceEEEEecC
Confidence            34566777777 55566678888888644

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=1.4e-19  Score=160.45  Aligned_cols=240  Identities=19%  Similarity=0.194  Sum_probs=176.6

Q ss_pred             eeCccccEEEEEEecCC--CEEEEEeCCCcEEEEECCCC----------------ceeeeeCCCCceEE--EEec-CCCE
Q 009373          154 LYGHTEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDG----------------FSIASSKPLGCTIR--AVAA-DKKL  212 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~--~~l~sgs~dg~v~iwd~~~~----------------~~~~~~~~~~~~v~--~~~~-~~~~  212 (536)
                      ..+|.+.|..+.-++-+  .+.++=+..|.|.||++...                +++.++.+|...-+  +++| ....
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34677777777777654  46667778999999997432                45666777765444  4444 2346


Q ss_pred             EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCc---eEe
Q 009373          213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL---KCL  286 (536)
Q Consensus       213 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~---~~~  286 (536)
                      |++|..-+.|++|...++.-.          .-...+.+|+..|..++|   ..+.|++||.||+|+|||++.+   .++
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~----------vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~  296 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWK----------VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV  296 (440)
T ss_pred             cccCccccceEeeeeccCcee----------ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence            889999999999998776421          123346679999999999   5689999999999999999988   445


Q ss_pred             EeeeccccEEEEeecC--CEEEEec-CCcEEEEeCCC---CcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEE
Q 009373          287 KVLRHSDWVYGLAPHD--TTVASTS-GSDVYIWDTNS---GCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMY  359 (536)
Q Consensus       287 ~~~~~~~~v~~~~~~~--~~l~~~~-d~~i~i~d~~~---~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iw  359 (536)
                      .+-.|.+.|+.+++++  .+|++|+ ||+++|||++.   ++++..|+ .|..+|+++.|+|.. ..|++++.|..|.+|
T Consensus       297 ~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiW  375 (440)
T KOG0302|consen  297 STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIW  375 (440)
T ss_pred             EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence            5544999999998543  3788888 79999999986   46777886 599999999999964 578889999999999


Q ss_pred             EcccCccccc-----c-----ceeeeccCC--CCCeEEEEEc---CCeEEEEeCCCcEEEE
Q 009373          360 EIINDCTEAN-----V-----LLVATWIPH--TGPVNSLAFE---FPWLVSAAGDGKLSLI  405 (536)
Q Consensus       360 d~~~~~~~~~-----~-----~~~~~~~~h--~~~v~~l~~~---~~~l~s~s~dg~i~vw  405 (536)
                      |+........     .     .+-+-+.-|  ...|..+.|+   |.+|++.+.|| +.||
T Consensus       376 DlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  376 DLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             EeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            9965432100     0     111122334  3467788887   48999999998 4444

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.84  E-value=4.5e-19  Score=154.21  Aligned_cols=269  Identities=20%  Similarity=0.312  Sum_probs=191.1

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCc-------e-----eeee-CCCCceEEEEe---------cCCCEEEEEeC
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-------S-----IASS-KPLGCTIRAVA---------ADKKLLVAGGT  218 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-------~-----~~~~-~~~~~~v~~~~---------~~~~~l~sg~~  218 (536)
                      ...+.|+|||..|++-+.|..+.+|++....       .     ...+ ......|+..+         |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            3467899999999999999999999985321       0     0011 11233443322         77889999999


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCE---EEEEE--eCCEEEEEecCCeEEEEeC-CCceEeEe---e
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI---TSLAL--DLTRIYSGSWDMTVRVWDR-ALLKCLKV---L  289 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~--~~~~l~s~s~dg~i~iwd~-~~~~~~~~---~  289 (536)
                      +.-|++||.-+|+           .........|.+.+   .+++|  ||..|++| ..+.|++||+ +.|+.-..   +
T Consensus       132 ~~PIh~wdaftG~-----------lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  132 DQPIHLWDAFTGK-----------LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             cCceeeeeccccc-----------cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence            9999999998875           22333344455444   47788  77787765 4689999998 44443222   2


Q ss_pred             e-----ccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCcEEEE
Q 009373          290 R-----HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMY  359 (536)
Q Consensus       290 ~-----~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iw  359 (536)
                      .     ..+-+.+++  | +...++.++ ...+-||.-..+.++..+. +|.+.|+.+.|.++|+.|++|.. |-.|-.|
T Consensus       200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCW  278 (406)
T ss_pred             hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence            2     345556665  4 445788888 6788888888888888885 79999999999999999999876 6789999


Q ss_pred             EcccCccccccceeeeccCCCC-CeEEEEEc----CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee
Q 009373          360 EIINDCTEANVLLVATWIPHTG-PVNSLAFE----FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  434 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (536)
                      |++...     .++..+..|.+ .-..|.|+    +++|++|+.||.|++||+++.-                  .....
T Consensus       279 DiR~~~-----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g------------------n~~sv  335 (406)
T KOG2919|consen  279 DIRYSR-----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG------------------NEVSV  335 (406)
T ss_pred             eehhcc-----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC------------------Ccccc
Confidence            999874     56777788876 55567774    3899999999999999998741                  22233


Q ss_pred             eccccccEEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009373          435 LHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       435 ~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~  468 (536)
                      +..+...+..++.++-  .++|++..   ++|..++
T Consensus       336 ~~~~sd~vNgvslnP~mpilatssGq---r~f~~~~  368 (406)
T KOG2919|consen  336 TGNYSDTVNGVSLNPIMPILATSSGQ---RIFKYPK  368 (406)
T ss_pred             cccccccccceecCcccceeeeccCc---eeecCCC
Confidence            4556677777777776  56666543   4444443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6.4e-20  Score=160.69  Aligned_cols=185  Identities=15%  Similarity=0.194  Sum_probs=149.8

Q ss_pred             CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEe
Q 009373          211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL  286 (536)
Q Consensus       211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~  286 (536)
                      ..++++-..|+|++||..++.             ....+.++...+..+.|    .+..+.+|+.||+|++||+++....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~  107 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES  107 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence            568899999999999997753             55667788888888888    3468999999999999999987766


Q ss_pred             Eeee---cc-ccEEEEe--ecCCEEEEec-----CCcEEEEeCCCCcE-EEEEccccccceEEEEEeCC-CCEEEEEcCC
Q 009373          287 KVLR---HS-DWVYGLA--PHDTTVASTS-----GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHT-GDFLFTGGED  353 (536)
Q Consensus       287 ~~~~---~~-~~v~~~~--~~~~~l~~~~-----d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~d  353 (536)
                      ..+.   ++ .+..+++  ..++.+++|.     +..|.+||++..+. +..+...|...|+++.|+|. .++|++|+.|
T Consensus       108 a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD  187 (376)
T KOG1188|consen  108 ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD  187 (376)
T ss_pred             hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence            6554   33 4566777  4677888776     35699999999877 78887889999999999995 4799999999


Q ss_pred             CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      |.|.+||+......   ..+.....|...|.++.|.+   +.|.+-+..++..+|+++.+.
T Consensus       188 GLvnlfD~~~d~Ee---DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  188 GLVNLFDTKKDNEE---DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             ceEEeeecCCCcch---hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence            99999999877332   33444456888899999965   479999999999999998754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.8e-20  Score=188.54  Aligned_cols=277  Identities=16%  Similarity=0.141  Sum_probs=200.7

Q ss_pred             EEEEecCCC-EEEEE----------eCCCcEEEEECCCCce------eeeeCC-CCceEEEEecCC----CEEEEEeCCC
Q 009373          163 TVFVLASAK-LLFTS----------GYDSIVRMWHLEDGFS------IASSKP-LGCTIRAVAADK----KLLVAGGTDG  220 (536)
Q Consensus       163 ~v~~~~~~~-~l~sg----------s~dg~v~iwd~~~~~~------~~~~~~-~~~~v~~~~~~~----~~l~sg~~dg  220 (536)
                      .++|+|.+. ++++|          +.+.++-||.+.....      +..+.. +.-.-+++...+    .+|+.|..||
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG   90 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG   90 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence            457888776 55554          3355666666543211      111111 111223333333    3689999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee---cccc
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDW  294 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~  294 (536)
                      .|.+||...-       ........+.+...|.+.|..+.|   .++.|++|+.||.|.|||+...+.-....   ..+.
T Consensus        91 ~I~ly~p~~~-------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e  163 (1049)
T KOG0307|consen   91 NIVLYDPASI-------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE  163 (1049)
T ss_pred             ceEEecchhh-------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence            9999997542       111234456677889999999999   45799999999999999998765544442   5678


Q ss_pred             EEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCC-EEEEEcCCC---cEEEEEcccCc
Q 009373          295 VYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGD-FLFTGGEDG---AIHMYEIINDC  365 (536)
Q Consensus       295 v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~-~l~tg~~dg---~i~iwd~~~~~  365 (536)
                      |.+++++   .+.|++++ +|.+.|||++..+++..+.... ...+..++|+|+.. .|++++.|.   .|.+||+|...
T Consensus       164 I~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as  243 (1049)
T KOG0307|consen  164 IKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS  243 (1049)
T ss_pred             ceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC
Confidence            8999965   45788888 7899999999998887775321 23588999999873 566666553   49999999875


Q ss_pred             cccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE
Q 009373          366 TEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL  442 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  442 (536)
                           .+++++.+|...|.++.|++   .+|++++.|+.|.+|+.++++....                   +......+
T Consensus       244 -----sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~-------------------~p~~~nW~  299 (1049)
T KOG0307|consen  244 -----SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE-------------------LPAQGNWC  299 (1049)
T ss_pred             -----CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee-------------------cCCCCcce
Confidence                 57788899999999999964   7999999999999999998543322                   23344677


Q ss_pred             EEEEecCC---EEEEecCCCeEEEEeCCchh
Q 009373          443 LSVDIGAD---RIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       443 ~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      +.+.|.++   .+++++.||.|-|+.+....
T Consensus       300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            88888765   89999999999999998755

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=2.8e-19  Score=163.84  Aligned_cols=253  Identities=15%  Similarity=0.188  Sum_probs=192.9

Q ss_pred             cEEEEEEecCCC-EEEEEeCCCcEEEEECCCC--c--eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccce
Q 009373          160 AVLTVFVLASAK-LLFTSGYDSIVRMWHLEDG--F--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       160 ~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~--~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  234 (536)
                      .|.++.|+.... .+++.+.|..+++|.-...  +  .+....+....++++.....++++|+..+.|+|||++..    
T Consensus        36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----  111 (673)
T KOG4378|consen   36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----  111 (673)
T ss_pred             cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH----
Confidence            388999987554 2334456888999974422  1  122233333344444455689999999999999999643    


Q ss_pred             ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeecc-ccEE-EEe--ecCC-EEEE
Q 009373          235 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-DWVY-GLA--PHDT-TVAS  307 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~v~-~~~--~~~~-~l~~  307 (536)
                               .....+.+|.+.|+++.+  ...+|++++..|.|.|..+.++.....+.+. +.+. -+.  +..+ +|.+
T Consensus       112 ---------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~  182 (673)
T KOG4378|consen  112 ---------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI  182 (673)
T ss_pred             ---------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe
Confidence                     356678899999999999  5689999999999999999999888888854 3333 343  4444 4455


Q ss_pred             ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373          308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  385 (536)
Q Consensus       308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  385 (536)
                      ++ +|.|.+||+....++..+...|..+...++|+|.. .+|++.+.|..|.+||.+...      ....+ ....+..+
T Consensus       183 asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~------s~~~l-~y~~Plst  255 (673)
T KOG4378|consen  183 ASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA------STDRL-TYSHPLST  255 (673)
T ss_pred             eccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc------cccee-eecCCcce
Confidence            55 79999999999999888888899999999999965 578889999999999998762      22222 34568899


Q ss_pred             EEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC
Q 009373          386 LAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD  450 (536)
Q Consensus       386 l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  450 (536)
                      ++|.+  .+|++|...|.|..||++..                  ..+..+++.|...|.+++|.+.
T Consensus       256 vaf~~~G~~L~aG~s~G~~i~YD~R~~------------------k~Pv~v~sah~~sVt~vafq~s  304 (673)
T KOG4378|consen  256 VAFSECGTYLCAGNSKGELIAYDMRST------------------KAPVAVRSAHDASVTRVAFQPS  304 (673)
T ss_pred             eeecCCceEEEeecCCceEEEEecccC------------------CCCceEeeecccceeEEEeeec
Confidence            99975  79999999999999999975                  4566778888888888887654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=153.06  Aligned_cols=251  Identities=19%  Similarity=0.197  Sum_probs=180.7

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEe-cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~  227 (536)
                      +...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......+. .+...|+.+. ..+..+.+-+.|+.+.+|++
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~i   84 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTI   84 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEc
Confidence            4568889999999999987665 8899999999999999999888888 5566777776 33478999999999999998


Q ss_pred             ccCccc-------------eecccCcccc---------------------cc--eE----EeeCCccCEEEEEE---eCC
Q 009373          228 VEVLPH-------------LFDISGSEKQ---------------------NT--QF----RLWEHEGPITSLAL---DLT  264 (536)
Q Consensus       228 ~~~~~~-------------~~~~~~~~~~---------------------~~--~~----~~~~h~~~v~~l~~---~~~  264 (536)
                      ......             .+.+....+.                     ..  +.    .-.+..+.+++..+   .+.
T Consensus        85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s  164 (323)
T KOG0322|consen   85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS  164 (323)
T ss_pred             cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence            763210             0000000000                     00  00    00123456777775   333


Q ss_pred             --EEEEEecCCeEEEEeCCCceEeEeee-----------ccccEEEEeecC---CEEEEecCCcEEEEeCCCC--cEE-E
Q 009373          265 --RIYSGSWDMTVRVWDRALLKCLKVLR-----------HSDWVYGLAPHD---TTVASTSGSDVYIWDTNSG--CLL-T  325 (536)
Q Consensus       265 --~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~---~~l~~~~d~~i~i~d~~~~--~~~-~  325 (536)
                        .+++|..+|.|.+||+.++..+-.+.           |..+|.++..+.   +-+..+.+..+..|++...  ... .
T Consensus       165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~  244 (323)
T KOG0322|consen  165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR  244 (323)
T ss_pred             eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence              46788899999999999874333221           777888887432   2222233667888877643  211 1


Q ss_pred             EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEE
Q 009373          326 VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLS  403 (536)
Q Consensus       326 ~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  403 (536)
                      ....-..-.+..+.+-||++.+||++.|+.||||+.++.      .++..+.-|.+.|++++|+|  +.++++|.|+.|.
T Consensus       245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl------~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS  318 (323)
T KOG0322|consen  245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL------NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS  318 (323)
T ss_pred             ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC------CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence            111112335778889999999999999999999999999      78889999999999999998  6999999999999


Q ss_pred             EEEC
Q 009373          404 LIDV  407 (536)
Q Consensus       404 vwd~  407 (536)
                      +|++
T Consensus       319 LWkL  322 (323)
T KOG0322|consen  319 LWKL  322 (323)
T ss_pred             eeec
Confidence            9986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=1.5e-17  Score=157.96  Aligned_cols=240  Identities=13%  Similarity=0.089  Sum_probs=168.4

Q ss_pred             ceeeeeCccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEEEE-eCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAG-GTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg-~~dg~i~vwd  226 (536)
                      .+..+.+|.. +.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+. ....+++++++.++++ +.++.+++||
T Consensus        23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d  101 (300)
T TIGR03866        23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVID  101 (300)
T ss_pred             eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence            4566666644 6789999999876 567789999999999998877665433 3455677888877554 5689999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC-eEEEEeCCCceEeEeeeccccEE--EEeec
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-TVRVWDRALLKCLKVLRHSDWVY--GLAPH  301 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~v~--~~~~~  301 (536)
                      +.+..             ....+. +...+.++++  ++..+++++.++ .+.+||..+++..........+.  .+.++
T Consensus       102 ~~~~~-------------~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  167 (300)
T TIGR03866       102 IETRK-------------VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD  167 (300)
T ss_pred             CCCCe-------------EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence            97642             222222 2234567777  678888888765 56778998887766554333333  44588


Q ss_pred             CCEEEEec--CCcEEEEeCCCCcEEEEEccc----cc--cceEEEEEeCCCCEEEE-EcCCCcEEEEEcccCccccccce
Q 009373          302 DTTVASTS--GSDVYIWDTNSGCLLTVVNGA----HV--GNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       302 ~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~----~~--~~i~~l~~~~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                      ++.+++++  ++.|.+||+.+++.+..+...    +.  .....++|+|+++++++ .+.++.+.+||+.+.      +.
T Consensus       168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------~~  241 (300)
T TIGR03866       168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------EV  241 (300)
T ss_pred             CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------cE
Confidence            88775543  799999999999877665311    11  12356889999998554 455678999999876      33


Q ss_pred             eeeccCCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECCccc
Q 009373          373 VATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLL  411 (536)
Q Consensus       373 ~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~  411 (536)
                      +..+ .+...+.+++|+|  .+|+++ +.+|.|.+||+++..
T Consensus       242 ~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       242 LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            3322 2345789999976  677776 468999999999853

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.1e-18  Score=173.56  Aligned_cols=290  Identities=16%  Similarity=0.210  Sum_probs=200.6

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC---ceEEEEe----cCCCEEEEEeCCCcEEEE
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVA----ADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~----~~~~~l~sg~~dg~i~vw  225 (536)
                      .+.+...+-..+.|+|-...++++...-.|+|||.+.++.+..+..+.   ..|..+.    .|..++++|+.||.|+||
T Consensus      1059 ~~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIw 1138 (1387)
T KOG1517|consen 1059 FMTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIW 1138 (1387)
T ss_pred             HHhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEe
Confidence            334444556778899988999999988899999999999988775543   3444444    466799999999999999


Q ss_pred             EcccCccceecccCcccccceEE---ee----CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--cccc
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFR---LW----EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDW  294 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~---~~----~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~  294 (536)
                      +-.....        .....+..   +.    +..+.-.-+.|  ..++|++++.-..|+|||.........+.  ....
T Consensus      1139 k~y~~~~--------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~ 1210 (1387)
T KOG1517|consen 1139 KDYADKW--------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL 1210 (1387)
T ss_pred             ccccccc--------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcc
Confidence            7432210        00011111   11    11111133455  45667777768999999999888887776  5566


Q ss_pred             EEEEe---ecCCEEEEec-CCcEEEEeCCCCcE---EEEEccccccc--eEEEEEeCCCCE-EEEEcCCCcEEEEEcccC
Q 009373          295 VYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGN--TKSLARSHTGDF-LFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       295 v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~--i~~l~~~~~~~~-l~tg~~dg~i~iwd~~~~  364 (536)
                      |++++   .+|+.+++|. ||.|++||.+....   +.... .|...  |..+.+.+.|-. |++|+.||.|++||++..
T Consensus      1211 vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            77887   5688888888 99999999987543   44443 57776  999999987754 999999999999999986


Q ss_pred             ccccccceeeeccCCC--C-CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373          365 CTEANVLLVATWIPHT--G-PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  439 (536)
Q Consensus       365 ~~~~~~~~~~~~~~h~--~-~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (536)
                      ...    ...+...|.  + ..+++..++  ..+++|+. +.|+||++...+.....             ....++....
T Consensus      1290 ~~e----~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k-------------~n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1290 SKE----TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK-------------YNPGFMGQRI 1351 (1387)
T ss_pred             ccc----ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc-------------cCcccccCcC
Confidence            221    111222232  3 589999976  78888888 99999998753221111             1111223333


Q ss_pred             ccEEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009373          440 CNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~  469 (536)
                      ..+.++.|++.  .+|+|+.|.+|.||..+.+
T Consensus      1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             CCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            45577888776  8899999999999988764

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.4e-17  Score=139.35  Aligned_cols=233  Identities=19%  Similarity=0.249  Sum_probs=174.7

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce------eeee---------CCCCceEEEEecCC
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS------IASS---------KPLGCTIRAVAADK  210 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~------~~~~---------~~~~~~v~~~~~~~  210 (536)
                      .|+.++-..++|.++|+.++|.  ..+|++|+ ||.|+-|.......      +...         .-.....+.+.|..
T Consensus        50 ~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e  126 (325)
T KOG0649|consen   50 PGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE  126 (325)
T ss_pred             CCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC
Confidence            4666778889999999999998  56788877 59999998654321      1111         11112233445788


Q ss_pred             CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373          211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      +.++.++.|+.++.||+++|.             ....+.+|++.|.++.-  ....+++|+.||++++||.+++++++.
T Consensus       127 nSi~~AgGD~~~y~~dlE~G~-------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  127 NSILFAGGDGVIYQVDLEDGR-------------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             CcEEEecCCeEEEEEEecCCE-------------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence            888888899999999998874             67789999999999998  557899999999999999999999988


Q ss_pred             ee-----------ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEE
Q 009373          289 LR-----------HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  357 (536)
Q Consensus       289 ~~-----------~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~  357 (536)
                      +.           ...+|.+++-+...+++|++..+.+|.+++.++...+.  -...+..+.|.  .+.++++++.+.|.
T Consensus       194 ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfp--ipa~v~~v~F~--~d~vl~~G~g~~v~  269 (325)
T KOG0649|consen  194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFP--IPARVHLVDFV--DDCVLIGGEGNHVQ  269 (325)
T ss_pred             eccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEe--cccceeEeeee--cceEEEecccccee
Confidence            75           23467888899999999999999999999999998885  66778888886  45688888888899


Q ss_pred             EEEcccCccccccceeeeccCCCCCeEEEEE--cC-CeEEEEeCCCcEEEE
Q 009373          358 MYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF-PWLVSAAGDGKLSLI  405 (536)
Q Consensus       358 iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~i~vw  405 (536)
                      -|.+..-      .. ..........++..+  +| .+|-.++....+.|+
T Consensus       270 ~~~l~Gv------l~-a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  270 SYTLNGV------LQ-ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eeeeccE------EE-EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            9987554      11 112222233444555  35 566666666666665

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=6.6e-19  Score=161.40  Aligned_cols=282  Identities=15%  Similarity=0.153  Sum_probs=195.0

Q ss_pred             eCCCcEEEEECCCCceeeeeCCCCc--eEEEEecCC-CEEEEE--eCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373          177 GYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADK-KLLVAG--GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  251 (536)
Q Consensus       177 s~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~-~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  251 (536)
                      +....+++||+........+..|..  .+..+..+. +.|+++  +.|..+++|.-.....         ....+....+
T Consensus         9 S~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~---------~Vp~~~k~~g   79 (673)
T KOG4378|consen    9 STGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP---------EVPRVRKLTG   79 (673)
T ss_pred             ccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC---------ccceeecccc
Confidence            3345799999976554444332221  255555332 225444  5577788886432210         0111112222


Q ss_pred             CccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEE
Q 009373          252 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLT  325 (536)
Q Consensus       252 h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~  325 (536)
                      .  .-.|++.  ...++++|+..+.|+|||++...+.+.+. |.+.|+++.  ....++++++ +|.|.|..+.++....
T Consensus        80 d--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   80 D--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             c--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence            2  2334443  44789999999999999999777777776 999999998  6688999999 6899999999998888


Q ss_pred             EEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCc
Q 009373          326 VVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGK  401 (536)
Q Consensus       326 ~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~  401 (536)
                      .+..+....+.-+.|+|..+ +|.+++.+|.|.+||+....     ....-...|..+...|+|+|   .+|++.+.|..
T Consensus       158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-----p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk  232 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-----PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK  232 (673)
T ss_pred             ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-----cccchhhhccCCcCcceecCCccceEEEecccce
Confidence            88654455677899999776 56788999999999998873     23444568999999999987   68999999999


Q ss_pred             EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhc
Q 009373          402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRG  481 (536)
Q Consensus       402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~  481 (536)
                      |.+||.+.....                  .+....|.....++..+|.+|+.|...|.|..||+...+..-....+   
T Consensus       233 i~~yD~~s~~s~------------------~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa---  291 (673)
T KOG4378|consen  233 INIYDIRSQAST------------------DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA---  291 (673)
T ss_pred             EEEeeccccccc------------------ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee---
Confidence            999999853211                  12233455566667777779999999999999999865433221111   


Q ss_pred             ccchhHHHhhhhccccccCC
Q 009373          482 IRLENRMRRRKLQTEMSSKG  501 (536)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~g  501 (536)
                            ....+++++|.|--
T Consensus       292 ------h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 ------HDASVTRVAFQPSP  305 (673)
T ss_pred             ------cccceeEEEeeecc
Confidence                  12236777777754

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=2.9e-18  Score=149.19  Aligned_cols=270  Identities=17%  Similarity=0.175  Sum_probs=189.1

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE---------eCCEEEEEecCC
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL---------DLTRIYSGSWDM  273 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~---------~~~~l~s~s~dg  273 (536)
                      ..++|||..|++-+.|..+++|++........ ............+. .....|.+.+|         +..++++.+.|.
T Consensus        55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~-~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKK-ADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             ceeCCCCceEEeecccCeeeEEecChhhcccC-CCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            35789999999999999999999854211000 00000011111111 22345666666         236889999999


Q ss_pred             eEEEEeCCCceEeEeee---ccccEE-----EEeecCCEEEEecCCcEEEEeC-CCCcEEEEE------ccccccceEEE
Q 009373          274 TVRVWDRALLKCLKVLR---HSDWVY-----GLAPHDTTVASTSGSDVYIWDT-NSGCLLTVV------NGAHVGNTKSL  338 (536)
Q Consensus       274 ~i~iwd~~~~~~~~~~~---~~~~v~-----~~~~~~~~l~~~~d~~i~i~d~-~~~~~~~~~------~~~~~~~i~~l  338 (536)
                      -|++||.-+|+....+.   |.+.++     +++++|..|++|....|++||+ +.|+-...+      +.+..+-|.++
T Consensus       134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~  213 (406)
T KOG2919|consen  134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF  213 (406)
T ss_pred             ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence            99999999999887775   544443     4459999999999999999999 666432221      12346788999


Q ss_pred             EEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC-CCcEEEEECCcccccC
Q 009373          339 ARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSG  414 (536)
Q Consensus       339 ~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~  414 (536)
                      +|+|.. ..++.|+....+-||.-...      .++..+.+|.+.|+.|.|.+  +.|++|+. |-.|..||++....+.
T Consensus       214 a~sP~~~~~~a~gsY~q~~giy~~~~~------~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  214 AFSPMDSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             eccCCCCcceeeecccceeeeEecCCC------CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            999965 48999999999999987777      67888899999999999964  78998886 7889999999743322


Q ss_pred             CCCCCCceeeEEeeCCCeeeeccc-----cccEEEEEecCCEEEEecCCCeEEEEeCCc-hhhHHHHHHhhhcccchhHH
Q 009373          415 RPTSGKRVSRVIEVEPPQRMLHGF-----ECNLLSVDIGADRIVCGGEEGIVRIWNFSQ-AFEIERRARALRGIRLENRM  488 (536)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~  488 (536)
                      .                  .+..|     ....+.+++.+++|++|+.||.|++||+.+ +.++.....          .
T Consensus       288 ~------------------~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~----------~  339 (406)
T KOG2919|consen  288 Y------------------ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN----------Y  339 (406)
T ss_pred             h------------------hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc----------c
Confidence            1                  11112     233567778888999999999999999998 443322211          2


Q ss_pred             HhhhhccccccCCCCcceeE
Q 009373          489 RRRKLQTEMSSKGGRTDQCS  508 (536)
Q Consensus       489 ~~~~~~~~~~~~g~~~~~~~  508 (536)
                      ..-...+.++|-=..+|+++
T Consensus       340 sd~vNgvslnP~mpilatss  359 (406)
T KOG2919|consen  340 SDTVNGVSLNPIMPILATSS  359 (406)
T ss_pred             cccccceecCcccceeeecc
Confidence            23345677777755555543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=1.9e-18  Score=157.15  Aligned_cols=280  Identities=18%  Similarity=0.193  Sum_probs=190.1

Q ss_pred             eCCCCceEE--EEecCC--CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEE
Q 009373          196 SKPLGCTIR--AVAADK--KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYS  268 (536)
Q Consensus       196 ~~~~~~~v~--~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s  268 (536)
                      ...+...|.  +|+|..  +++++|+..|.|-+||+.+..         .....+..+..|.++|.++.|   +...+++
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~---------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s  252 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE---------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYS  252 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC---------CccCceEEeccCCccccceEecCCChhheee
Confidence            334444444  455543  589999999999999996332         224466778899999999999   5678999


Q ss_pred             EecCCeEEEEeCCCceEeEeeec---cccEEEEe--ec-CCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373          269 GSWDMTVRVWDRALLKCLKVLRH---SDWVYGLA--PH-DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  342 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~--~~-~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~  342 (536)
                      .|.||+|++-|++.......+..   .....++.  .+ +..++...=|...+||++++..-.....-|...|++++++|
T Consensus       253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP  332 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP  332 (498)
T ss_pred             eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence            99999999999987654433332   22333333  33 34444444479999999998663333335888999999999


Q ss_pred             CC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCC
Q 009373          343 TG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG  419 (536)
Q Consensus       343 ~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~  419 (536)
                      .. .+|+|++.|++.+|||++.-.....  ++.....|.-.|.+..|+|  ..|++.+.|..|+|||..-.....     
T Consensus       333 ~~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~-----  405 (498)
T KOG4328|consen  333 VCPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD-----  405 (498)
T ss_pred             CCchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC-----
Confidence            65 5799999999999999988754332  3445568999999999997  569999999999999985111000     


Q ss_pred             CceeeEEeeCCCeeeecccc----ccEE--EEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhh
Q 009373          420 KRVSRVIEVEPPQRMLHGFE----CNLL--SVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKL  493 (536)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~----~~v~--~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (536)
                               .+...+.|.+.    ...+  .+.|+..+++.|-.-..|-|+|-..+..+.+...+....        -..
T Consensus       406 ---------~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t--------I~~  468 (498)
T KOG4328|consen  406 ---------EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST--------IPS  468 (498)
T ss_pred             ---------CccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc--------ccc
Confidence                     01111111111    1122  344555699999999999999998887665543322211        122


Q ss_pred             ccccccCCCCcceeE
Q 009373          494 QTEMSSKGGRTDQCS  508 (536)
Q Consensus       494 ~~~~~~~g~~~~~~~  508 (536)
                      -.+|+|-+..+++++
T Consensus       469 vn~~HP~~~~~~aG~  483 (498)
T KOG4328|consen  469 VNEFHPMRDTLAAGG  483 (498)
T ss_pred             ceeecccccceeccC
Confidence            357888887666543

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.80  E-value=4.6e-16  Score=138.21  Aligned_cols=230  Identities=16%  Similarity=0.191  Sum_probs=178.7

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCc--EEEEEcccCcccee
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGF--IHCWRAVEVLPHLF  235 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~--i~vwd~~~~~~~~~  235 (536)
                      ...+..+.|+.+...|..|+.|| -++|+.+...........+..|...-+...+++..+.+..  +++.++..+.    
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~----   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT----   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc----
Confidence            34567777998899999999998 5788877655544444455667777777777777766544  7888775431    


Q ss_pred             cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEeec--CCEEEEec
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLAPH--DTTVASTS  309 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~--~~~l~~~~  309 (536)
                                ...-.....+|.++.++.++|+++-.+. |+|||+++.+.++++.    +...+.+++++  +.+++--+
T Consensus        80 ----------~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~  148 (391)
T KOG2110|consen   80 ----------TICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG  148 (391)
T ss_pred             ----------eEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC
Confidence                      1111234578999999999999888765 9999999999999887    44457777754  34776544


Q ss_pred             ---CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc-EEEEEcccCccccccceeeeccCC--CCCe
Q 009373          310 ---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIPH--TGPV  383 (536)
Q Consensus       310 ---d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~h--~~~v  383 (536)
                         .|.|.+||+.+-+++..+. .|.+.+-+++|+++|.+|||+++.|+ ||||.+.++      ..+..++..  ...|
T Consensus       149 s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G------~kl~eFRRG~~~~~I  221 (391)
T KOG2110|consen  149 STTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG------QKLYEFRRGTYPVSI  221 (391)
T ss_pred             CCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc------cEeeeeeCCceeeEE
Confidence               4899999999999999996 79999999999999999999999998 799999998      455555543  3467


Q ss_pred             EEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          384 NSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       384 ~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .+|+|++  .+|++.|..++|++|.+...
T Consensus       222 ySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  222 YSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            8999986  79999999999999998764

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=3.7e-18  Score=155.35  Aligned_cols=272  Identities=13%  Similarity=0.177  Sum_probs=202.2

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCCeEEE
Q 009373          201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRV  277 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~i  277 (536)
                      ..++.|+|....+++++.||++++|.+....           ...+..+.--..+|.+..|  +|. .+++++.....+.
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~-----------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys  284 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-----------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS  284 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCcc-----------ChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence            3455666889999999999999999986542           2234444445678888888  666 8999999999999


Q ss_pred             EeCCCceEeEeee---cc---ccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEE
Q 009373          278 WDRALLKCLKVLR---HS---DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG  350 (536)
Q Consensus       278 wd~~~~~~~~~~~---~~---~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg  350 (536)
                      ||+.+.+..+.-.   +.   -.-..+++++++++..+ .|.|.+....+++.+..++  -.+.|..++|+.+++.|+++
T Consensus       285 yDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~  362 (514)
T KOG2055|consen  285 YDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLAS  362 (514)
T ss_pred             eeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEE
Confidence            9999887655433   22   22345668999999888 8999999999999999986  78899999999999999999


Q ss_pred             cCCCcEEEEEcccCccccccceeeeccCCCCCe--EEEE--EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE
Q 009373          351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPV--NSLA--FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                      +.+|.|.+||++..      .++..+... +.|  ++++  .++.+|++||..|.|.|||.++......           
T Consensus       363 ~~~GeV~v~nl~~~------~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~-----------  424 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQN------SCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN-----------  424 (514)
T ss_pred             cCCceEEEEecCCc------ceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCC-----------
Confidence            99999999999988      566665432 222  3333  4568999999999999999877533322           


Q ss_pred             eeCCCeeeeccccccEEEEEecCC--EE--EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCC
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGAD--RI--VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGG  502 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~--~l--~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  502 (536)
                        +.+...+..-...|.++.|+++  .|  +|-..+..+|+-.+++............       .-..+.+++|||.|+
T Consensus       425 --PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~-------~vg~vtc~aFSP~sG  495 (514)
T KOG2055|consen  425 --PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT-------KVGHVTCMAFSPNSG  495 (514)
T ss_pred             --CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC-------cccceEEEEecCCCc
Confidence              2333444555567888888877  44  4555688899999988665554433222       223468999999999


Q ss_pred             CcceeEeecc
Q 009373          503 RTDQCSVAAK  512 (536)
Q Consensus       503 ~~~~~~~~~~  512 (536)
                      .+|.+--++.
T Consensus       496 ~lAvGNe~gr  505 (514)
T KOG2055|consen  496 YLAVGNEAGR  505 (514)
T ss_pred             eEEeecCCCc
Confidence            9998754443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=4.8e-17  Score=136.18  Aligned_cols=240  Identities=17%  Similarity=0.195  Sum_probs=171.7

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCC----------ceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      .|.+-+++|.+++|++|+.+|+|.+..+.+.          ..+...++|.++++.+.....+|++|+. |.|+-|.+.+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E   90 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE   90 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence            3556678999999999999999999998532          3455568999999999988888888876 9999998865


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCE
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT  304 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~  304 (536)
                      .......-.--+...+...-...-..|+++..+  .+.+++++.|+.++-||+++|+...+++ |.+.|.++.  .....
T Consensus        91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q  170 (325)
T KOG0649|consen   91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ  170 (325)
T ss_pred             hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence            432100000000000111001112356777774  3567777799999999999999999998 999999998  33445


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEcc--------cc-ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNG--------AH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~--------~~-~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                      +++|+ ||++++||.++++.+..+..        .| ...|-+++.  +..++++|+ ...+.+|+++..      .+..
T Consensus       171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss------e~t~  241 (325)
T KOG0649|consen  171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS------ESTC  241 (325)
T ss_pred             eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC------CceE
Confidence            55555 99999999999999888742        12 223555555  456887775 456999999987      3333


Q ss_pred             eccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373          375 TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .+ +-.++|..+.|..+.+++++....|.-|.+...
T Consensus       242 vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  242 VF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             EE-ecccceeEeeeecceEEEeccccceeeeeeccE
Confidence            33 345678888999999999998889999988653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=5e-18  Score=146.84  Aligned_cols=258  Identities=16%  Similarity=0.203  Sum_probs=176.0

Q ss_pred             eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc----eEeEeee-ccccEEEEe----ecCCEEEEec-CCcEEEEe
Q 009373          250 WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL----KCLKVLR-HSDWVYGLA----PHDTTVASTS-GSDVYIWD  317 (536)
Q Consensus       250 ~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~----~~~~~l~~~~-d~~i~i~d  317 (536)
                      .+|.+-|.++.|  .|+++++|+.|++|+|||.+..    .+....+ |.+.|..+.    .-|+.+++++ |+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468889999999  7899999999999999996543    3334444 899999987    3588999999 99999997


Q ss_pred             CCCC---------cEEEEEccccccceEEEEEeCC--CCEEEEEcCCCcEEEEEcccCccccccceeeecc-------CC
Q 009373          318 TNSG---------CLLTVVNGAHVGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-------PH  379 (536)
Q Consensus       318 ~~~~---------~~~~~~~~~~~~~i~~l~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h  379 (536)
                      -...         ....++. ...+.|+.+.|.|.  |-.|++++.||.+|||+..+............+.       .+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEee-cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            6211         1223333 36778999999995  5689999999999999987764443333333333       56


Q ss_pred             CCCeEEEEEcC-----CeEEEEeCC-----CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC
Q 009373          380 TGPVNSLAFEF-----PWLVSAAGD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA  449 (536)
Q Consensus       380 ~~~v~~l~~~~-----~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  449 (536)
                      ..+..|+.|++     .+|+.|+.+     +.++||......+.+.               ....+.+|..+|.+++|.+
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~---------------kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL---------------KVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee---------------eehhcCCCCCcceeeeecc
Confidence            77889999975     578887776     5899998765422211               1123458889999999877


Q ss_pred             C------EEEEecCCCeEEEEeCCchhhHHHHHHhhhcc----------cchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373          450 D------RIVCGGEEGIVRIWNFSQAFEIERRARALRGI----------RLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       450 ~------~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  513 (536)
                      +      .||+++.|| |+||++......-.....+.+.          ......+-+.=.+.|+--|..|++...+++.
T Consensus       234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V  312 (361)
T KOG2445|consen  234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV  312 (361)
T ss_pred             ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee
Confidence            5      799999999 9999998533111111111110          0111222234456677777777777777776


Q ss_pred             CCcCCCcceee
Q 009373          514 NPMNGNRRSVW  524 (536)
Q Consensus       514 ~~~~~~~~~~~  524 (536)
                      +........+|
T Consensus       313 RLWkany~n~~  323 (361)
T KOG2445|consen  313 RLWKANYNNLW  323 (361)
T ss_pred             eehhhhhhhhh
Confidence            66554444444

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.79  E-value=5.4e-18  Score=147.92  Aligned_cols=240  Identities=17%  Similarity=0.198  Sum_probs=177.4

Q ss_pred             CccccEEEEEEecC----CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcc
Q 009373          156 GHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       156 ~h~~~V~~v~~~~~----~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~  228 (536)
                      .|...-+.++|+-+    ..++|.|+.-|.|+|.|+.+++....+.+|+..|..+.  | +.++++++|.|.+|++|+++
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            47888888999864    45899999999999999999999999999999998876  4 46799999999999999998


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeE-------------------
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK-------------------  287 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~-------------------  287 (536)
                      +....          ....-+.+|.+.|.++.|  +++++++++.|.++++|++...+...                   
T Consensus       167 ~~~Cv----------~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt  236 (385)
T KOG1034|consen  167 TDVCV----------AVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPT  236 (385)
T ss_pred             CCeEE----------EEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCc
Confidence            76411          122234579999999999  78899999999999999987332110                   


Q ss_pred             ------ee----eccccEEEEeecCCEEEEec-CCcEEEEeC-CCCcE-------------EEEEccccccceEE--EEE
Q 009373          288 ------VL----RHSDWVYGLAPHDTTVASTS-GSDVYIWDT-NSGCL-------------LTVVNGAHVGNTKS--LAR  340 (536)
Q Consensus       288 ------~~----~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~-~~~~~-------------~~~~~~~~~~~i~~--l~~  340 (536)
                            .+    .|..+|-|+..-|.++++-+ ++.|..|.. +-++.             +..+. -....|.-  .+|
T Consensus       237 ~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~  315 (385)
T KOG1034|consen  237 PKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAF  315 (385)
T ss_pred             cccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEee
Confidence                  11    05555666667788888877 899999987 22222             11121 12223443  456


Q ss_pred             eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373          341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~  408 (536)
                      +|-++.||.|...|.|.+||++...+.......  -......|...+|+  +..|+....|++|.-||..
T Consensus       316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLT--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             cHHHHHHhhccCCCcEEEEECCCCCCccCceEE--eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            677899999999999999999988543211111  12234577777785  5899999999999999864

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.7e-17  Score=142.77  Aligned_cols=271  Identities=15%  Similarity=0.192  Sum_probs=184.0

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373          201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw  278 (536)
                      ..+..|++.|.+|++|..||.|.|||+.|-             .....+.+|..+|++++|  +|..|+|+|.|..|.+|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lw   92 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLW   92 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcccc-------------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEE
Confidence            556677899999999999999999999774             245567899999999999  89999999999999999


Q ss_pred             eCCCceEeEeeeccccEEEEe--ec--CCEEEEecCCcEEEEeCCCCcEEEEEccccc----cceEEEEEeCCCCEEEEE
Q 009373          279 DRALLKCLKVLRHSDWVYGLA--PH--DTTVASTSGSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTG  350 (536)
Q Consensus       279 d~~~~~~~~~~~~~~~v~~~~--~~--~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~tg  350 (536)
                      |+..|.+++.+....+|....  |.  +..+++--+..-.+.++..+.... +.....    ....+..|++.|+++++|
T Consensus        93 Dl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   93 DLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             eccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCccccccccccccccCCCCEEEEe
Confidence            999999999999999999887  33  233333335555555555432211 111111    122334688999999999


Q ss_pred             cCCCcEEEEEcccCccccccceeeeccCCC-CCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          351 GEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      ...|.+.+||..+.      .++..++-.. ..|..+.++  +.+|+.-+.|..|+.|+++......+-..-..      
T Consensus       172 tsKGkllv~~a~t~------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~------  239 (405)
T KOG1273|consen  172 TSKGKLLVYDAETL------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP------  239 (405)
T ss_pred             cCcceEEEEecchh------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh------
Confidence            99999999999887      5666665544 677888775  58999999999999999985432211100000      


Q ss_pred             eCCCeeeeccccccEEEEEecCCEEEEec-CCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373          428 VEPPQRMLHGFECNLLSVDIGADRIVCGG-EEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  506 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  506 (536)
                      ..+.+.......-...+++-+|.|++.|+ .-..++||.-..|..++-+.    |...     .....+.|+|--..+++
T Consensus       240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh----G~kg-----E~l~DV~whp~rp~i~s  310 (405)
T KOG1273|consen  240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH----GTKG-----EELLDVNWHPVRPIIAS  310 (405)
T ss_pred             hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec----CCch-----hheeecccccceeeeee
Confidence            00011111122223345555666776655 45679999999988775432    2211     22345667766555554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=8.7e-17  Score=144.34  Aligned_cols=290  Identities=22%  Similarity=0.268  Sum_probs=198.8

Q ss_pred             cccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCc---------eeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEE
Q 009373          158 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGF---------SIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       158 ~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~---------~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vw  225 (536)
                      ..+|.++.|.+++. .++||+.|..|++|-+..+.         .+..+..|...|.++  +|+|++|++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46899999998766 99999999999999886442         234456777766554  5889999999999999999


Q ss_pred             EcccCccceecccC-----cccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEE
Q 009373          226 RAVEVLPHLFDISG-----SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG  297 (536)
Q Consensus       226 d~~~~~~~~~~~~~-----~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~  297 (536)
                      ....-.  +++...     .+.......+.+|...|..++|  ++..+++++.|.++++||+..|+....+. |...+..
T Consensus        93 k~~~~~--~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   93 KQGDVR--IFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG  170 (434)
T ss_pred             EecCcC--CccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence            876321  111111     2334456677889999999999  88899999999999999999999998887 8888888


Q ss_pred             Ee--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc-------c-----------cccc----ceEEEEEeCCCCEEEEEcC
Q 009373          298 LA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN-------G-----------AHVG----NTKSLARSHTGDFLFTGGE  352 (536)
Q Consensus       298 ~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-------~-----------~~~~----~i~~l~~~~~~~~l~tg~~  352 (536)
                      ++  |.++++++-+ |...+.+++...+.+....       .           -|..    -...++|+|+|.++++...
T Consensus       171 vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag  250 (434)
T KOG1009|consen  171 VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG  250 (434)
T ss_pred             eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence            77  6677777766 6656666554433222211       0           0111    2456789999999988642


Q ss_pred             ----CCc-----EEEEEcccCccccccceeeeccCCCCCeEEEEEcC-------------------CeEEEEeCCCcEEE
Q 009373          353 ----DGA-----IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-------------------PWLVSAAGDGKLSL  404 (536)
Q Consensus       353 ----dg~-----i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------------~~l~s~s~dg~i~v  404 (536)
                          .+.     .++|+-....     ++...+.+...++..+.|+|                   ..+++......|+|
T Consensus       251 ~~~~g~~~~~n~tYvfsrk~l~-----rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyv  325 (434)
T KOG1009|consen  251 LFKVGGGVFRNTSYVFSRKDLK-----RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYV  325 (434)
T ss_pred             eeeeCCceeeceeEeecccccc-----CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEE
Confidence                222     3444433221     34555555566666666643                   23344444557999


Q ss_pred             EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhH
Q 009373          405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ||.++..                  +....-.-|-..++.++|+++  .|+..|.||...+-.++..+.-
T Consensus       326 ydtq~~~------------------P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  326 YDTQTLE------------------PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             ecccccc------------------ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            9988742                  222222335566666666655  9999999999988888765543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.77  E-value=1e-18  Score=169.66  Aligned_cols=275  Identities=20%  Similarity=0.279  Sum_probs=200.3

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ++.|.||..+|+|+.|...|.+++||+.|..|+||..+++.++....+|.+.+..++  .+..++++++.|..|++|.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            567889999999999999999999999999999999999999999999999998887  456688999999999999998


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEee------eccccEEEEe--e
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL------RHSDWVYGLA--P  300 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~~~~~v~~~~--~  300 (536)
                      ++.             ++..+.+|++.|++++|.+..  +.+.||++++||.+ .......      ...+-+.++.  .
T Consensus       263 ~~~-------------pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~  326 (1113)
T KOG0644|consen  263 DGA-------------PVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFEN  326 (1113)
T ss_pred             CCc-------------hHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccc
Confidence            764             667788999999999997765  78899999999987 1111111      1223333333  4


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      ++.-+.+++ ++.-..|....-.       .+...+.-+.++.+ ..+.+++-.+-.+.+|++.++      ...+.+.+
T Consensus       327 ~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g------~l~H~l~g  393 (1113)
T KOG0644|consen  327 NGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG------QLLHNLMG  393 (1113)
T ss_pred             cccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccc------hhhhhhcc
Confidence            556667776 6666666543211       11111111111111 245667777888999999998      67888899


Q ss_pred             CCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE--EEecCCEEE
Q 009373          379 HTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS--VDIGADRIV  453 (536)
Q Consensus       379 h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~  453 (536)
                      |...+..|.++|   ....+++.||...|||+-.+....                  ....+|. .+..  ++.+|..++
T Consensus       394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik------------------~y~~gh~-kl~d~kFSqdgts~~  454 (1113)
T KOG0644|consen  394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK------------------HYFIGHG-KLVDGKFSQDGTSIA  454 (1113)
T ss_pred             cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce------------------eeecccc-eeeccccCCCCceEe
Confidence            999999999986   577899999999999997753221                  1112332 2223  334444777


Q ss_pred             EecCCCeEEEEeCCchhhHH
Q 009373          454 CGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       454 sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      ....-|.++|.....++...
T Consensus       455 lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  455 LSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             cCCCCCceEEeccCCCcccc
Confidence            77778888888777665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=8.4e-17  Score=162.85  Aligned_cols=259  Identities=13%  Similarity=0.119  Sum_probs=176.6

Q ss_pred             cceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-------ceeeeeC--CCCceEEEEecCCCEEEEEeC
Q 009373          149 YSIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG-------FSIASSK--PLGCTIRAVAADKKLLVAGGT  218 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~-------~~~~~~~--~~~~~v~~~~~~~~~l~sg~~  218 (536)
                      ..+..|+.|+..|..++.++.. .+++|||.||+|++||...-       +...++.  +.....+.+++.++.+|+|+.
T Consensus      1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred             eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence            4589999999999999998765 89999999999999998532       2233333  333444555689999999999


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEE-EE---eCC-EEEEEecCCeEEEEeCCCceEeEeee--
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSL-AL---DLT-RIYSGSWDMTVRVWDRALLKCLKVLR--  290 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l-~~---~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~--  290 (536)
                      ||.|.+.+++........      .........+ .+.+.++ ++   ... .++.+..-+.|..||+++......++  
T Consensus      1119 DG~v~~~~id~~~~~~~~------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRV------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             CCeEEEEEccccccccce------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            999999998652111000      0111111112 2334444 33   334 78888999999999999887777666  


Q ss_pred             -ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC---EEEE-Ec-CCCcEEEEEc
Q 009373          291 -HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD---FLFT-GG-EDGAIHMYEI  361 (536)
Q Consensus       291 -~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~---~l~t-g~-~dg~i~iwd~  361 (536)
                       ..+.|++++  +.+..++.|+ .|.+.+||++-+.++.....++..+|+.+..+|-..   ..++ |+ ..+.|.+|++
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence             456777776  8888999998 799999999999999988777778899888887433   4444 44 4678999999


Q ss_pred             ccCcccccc------ceeeecc-------CCCCCeEEEEE-c-CCeEEEEeCCCcEEEEECCccccc
Q 009373          362 INDCTEANV------LLVATWI-------PHTGPVNSLAF-E-FPWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       362 ~~~~~~~~~------~~~~~~~-------~h~~~v~~l~~-~-~~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      .++.....+      ..+....       .+.-......+ + ..++.+|+.|..|+.||.......
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            887432100      0000000       11111111222 2 379999999999999998765444

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=8.5e-18  Score=154.09  Aligned_cols=291  Identities=19%  Similarity=0.177  Sum_probs=210.9

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CCCCceEEE--Eec--CCCEEEEEeCCCcEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRA--VAA--DKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~--~~~--~~~~l~sg~~dg~i~vw  225 (536)
                      ...|.+|.+.|..|.|+..|..|++||.|..|.+||...+.....+ .+|...|..  |-|  +...+++.+.||.|++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            4578899999999999999999999999999999999988877666 456555533  333  45689999999999987


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee----ccc---cE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSD---WV  295 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~---~v  295 (536)
                      .+...          ........+..|.++|..++.   .+..|++++.|+.+.-+|+++......+.    +..   ..
T Consensus       215 ~i~~t----------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L  284 (559)
T KOG1334|consen  215 EILET----------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGL  284 (559)
T ss_pred             eeccc----------cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceee
Confidence            76432          112335567789999999998   56789999999999999998776544443    222   33


Q ss_pred             EEEe--ecC-CEEEEec-CCcEEEEeCCCCcE------EEEEcc-----ccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          296 YGLA--PHD-TTVASTS-GSDVYIWDTNSGCL------LTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       296 ~~~~--~~~-~~l~~~~-d~~i~i~d~~~~~~------~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      ++++  |.. ..+++++ |.-+++||.+.-..      +..+-.     ...-.|++++|+.++.-|.++..|-.|+++.
T Consensus       285 ~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  285 YTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             eeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEec
Confidence            4555  443 3666666 88899999875321      222221     2334799999998888788888888899995


Q ss_pred             cccCcc--cc--c--ccee-eeccCCCC--CeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEee
Q 009373          361 IINDCT--EA--N--VLLV-ATWIPHTG--PVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV  428 (536)
Q Consensus       361 ~~~~~~--~~--~--~~~~-~~~~~h~~--~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  428 (536)
                      -..+..  +.  .  -..+ ..+++|..  .|.++-|-+   .|+++||.-|.|.||+-.++                  
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~------------------  426 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG------------------  426 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh------------------
Confidence            433211  00  0  0112 23678854  578888853   79999999999999998874                  


Q ss_pred             CCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchh
Q 009373          429 EPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       429 ~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~  470 (536)
                       +..+.+.+....|.|+.+.+-  .|||.|-|.-|+||...+.+
T Consensus       427 -eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  427 -EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             -HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence             333444555558889998887  89999999999999985443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.2e-18  Score=172.49  Aligned_cols=235  Identities=16%  Similarity=0.157  Sum_probs=182.3

Q ss_pred             ccEEEEEEecCCCE----EEEEeCCCcEEEEECCC---C---ceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEE
Q 009373          159 EAVLTVFVLASAKL----LFTSGYDSIVRMWHLED---G---FSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       159 ~~V~~v~~~~~~~~----l~sgs~dg~v~iwd~~~---~---~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vw  225 (536)
                      ..-+.++|.+.+..    +|.|..||.|.+||...   +   ..+.+...|.+.|..+.   ..++.|++|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45678889887664    89999999999999865   2   34566788999998876   346799999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEEeC---CEEEEEecCCeEEEEeCCCceEeEeee-ccc--cEEEEe
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR-HSD--WVYGLA  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~--~v~~~~  299 (536)
                      |+.......           ...-....+.|.+++|+.   ..|++++.+|.+.|||++..+.+-.+. +..  .+..+.
T Consensus       145 Dlnn~~tP~-----------~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~  213 (1049)
T KOG0307|consen  145 DLNKPETPF-----------TPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA  213 (1049)
T ss_pred             ccCCcCCCC-----------CCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeee
Confidence            996632110           000122467899999944   579999999999999999887777666 332  244555


Q ss_pred             --ec-CCEEEEec--C--CcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccccc
Q 009373          300 --PH-DTTVASTS--G--SDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       300 --~~-~~~l~~~~--d--~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                        |+ ...+++++  |  -.|.+||++... +++.+ .+|...|.++.|++.+ .+|++++.|+.|.+|+..++      
T Consensus       214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg------  286 (1049)
T KOG0307|consen  214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG------  286 (1049)
T ss_pred             eCCCCceeeeeecCCCCCceeEeecccccCCchhhh-cccccceeeeccCCCCchhhhcccCCCCeeEecCCCc------
Confidence              33 33444444  3  359999998754 44444 5799999999999977 89999999999999999998      


Q ss_pred             ceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373          371 LLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      +.+..+......+..+.|.|   ..+++++-||.|.|+.+....
T Consensus       287 Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  287 EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            67888888888999999975   689999999999999998653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.76  E-value=6.5e-15  Score=147.06  Aligned_cols=283  Identities=29%  Similarity=0.467  Sum_probs=212.1

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-eeeeeCCCCc-eE--EEE-ecCCC-EEEEEeC-CCcEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-SIASSKPLGC-TI--RAV-AADKK-LLVAGGT-DGFIHC  224 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~-~v--~~~-~~~~~-~l~sg~~-dg~i~v  224 (536)
                      ..+.+|...|.++.+.+.+..++.++.|+.+.+|+...+. ....+..... .+  ..+ .+++. .++..+. |+.+.+
T Consensus        59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  138 (466)
T COG2319          59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL  138 (466)
T ss_pred             heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence            3678899999999999999999999999999999998886 6666655322 22  233 55666 4555444 999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeCCCceEeEeee-ccccEEEEe-
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR-HSDWVYGLA-  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~-~~~~v~~~~-  299 (536)
                      |+....            ......+..|...|..++|  ++..+++++. |+.+++|+...+..+..+. |...|.++. 
T Consensus       139 ~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  206 (466)
T COG2319         139 WDLSTP------------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF  206 (466)
T ss_pred             EEecCC------------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence            998651            2356678889999999999  5567888875 9999999999877877777 788898887 


Q ss_pred             -ecCC-EEEEec-CCcEEEEeCCCCcEEE-EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          300 -PHDT-TVASTS-GSDVYIWDTNSGCLLT-VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       300 -~~~~-~l~~~~-d~~i~i~d~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                       +++. .+++++ |+.+++||...+.... .+ .+|.... ...|+|++.++++++.|+.+++|+......     .+..
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~  279 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL-SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-----LLRT  279 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCCcEEeeec-CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-----EEEE
Confidence             6666 555535 8999999999887777 45 3577765 348999998999999999999999987732     2333


Q ss_pred             ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CE
Q 009373          376 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DR  451 (536)
Q Consensus       376 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~  451 (536)
                      +.+|...|.++.|.|  ..+++++.|+.+.+||..+........                 ...|...+..+.+.+  ..
T Consensus       280 ~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~  342 (466)
T COG2319         280 LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-----------------LKGHEGPVSSLSFSPDGSL  342 (466)
T ss_pred             EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-----------------ecccCCceEEEEECCCCCE
Confidence            368899999999987  778889999999999887642221100                 123444455555522  35


Q ss_pred             EEEe-cCCCeEEEEeCCchh
Q 009373          452 IVCG-GEEGIVRIWNFSQAF  470 (536)
Q Consensus       452 l~sg-~~Dg~i~vW~~~~~~  470 (536)
                      ++.+ ..|+.+.+|+.....
T Consensus       343 ~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         343 LVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             EEEeecCCCcEEeeecCCCc
Confidence            5555 788999999999875

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.76  E-value=8.7e-17  Score=138.11  Aligned_cols=231  Identities=17%  Similarity=0.287  Sum_probs=171.7

Q ss_pred             eCccccEEEEEEecCC-----CEEEEEeCCCcEEEEECCCC--cee--ee-----eCCCCceEEEEe---cCCCEEEEEe
Q 009373          155 YGHTEAVLTVFVLASA-----KLLFTSGYDSIVRMWHLEDG--FSI--AS-----SKPLGCTIRAVA---ADKKLLVAGG  217 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~-----~~l~sgs~dg~v~iwd~~~~--~~~--~~-----~~~~~~~v~~~~---~~~~~l~sg~  217 (536)
                      ..|.-+++.+.|.|+.     ++|||++  ..+|+|.+...  +..  ..     -..+..++++|.   .+.++|.+.+
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            5789999999999986     3676654  47999998742  111  11     123455777776   5788999999


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e--CCEEEEEecCCeEEEEeCCCceEeEeee----
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D--LTRIYSGSWDMTVRVWDRALLKCLKVLR----  290 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~----  290 (536)
                      -|-+..|||++++.          ......++..|...|..++| .  -+.|++.+.||.|++||++..+-...+-    
T Consensus       171 iDTTCTiWdie~~~----------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~  240 (364)
T KOG0290|consen  171 IDTTCTIWDIETGV----------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS  240 (364)
T ss_pred             ccCeEEEEEEeecc----------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence            99999999998862          12245567899999999999 3  3789999999999999998765444332    


Q ss_pred             ccccEEEEe---ecCCEEEEec--CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEccc
Q 009373          291 HSDWVYGLA---PHDTTVASTS--GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIIN  363 (536)
Q Consensus       291 ~~~~v~~~~---~~~~~l~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~  363 (536)
                      ...+...++   .+.+++++-.  ...|.+.|++... ++..+. +|.+.|++++|.|.. ..|++++.|..+.+||+..
T Consensus       241 ~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  241 PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence            244556666   4566777655  4779999999864 555664 799999999999964 6899999999999999987


Q ss_pred             CccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCC
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGD  399 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~d  399 (536)
                      ........++..+. ..+.|+.+.|++   ++++.+...
T Consensus       320 ~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  320 MPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             ccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence            64422233444444 577999999974   788877654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=8.4e-16  Score=150.94  Aligned_cols=260  Identities=16%  Similarity=0.163  Sum_probs=174.8

Q ss_pred             CCcEEEEECCCCc-eeeee-CCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccC
Q 009373          179 DSIVRMWHLEDGF-SIASS-KPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP  255 (536)
Q Consensus       179 dg~v~iwd~~~~~-~~~~~-~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  255 (536)
                      ++.+.||++.... +-..+ ......+.+++ .++.+++.|..+|.|.+||+..+....       ..........|..+
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~ls~~~~sh~~~  293 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSGLSALEVSHSEP  293 (555)
T ss_pred             CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------CcccccccccCCcC
Confidence            3579999998763 22223 22334455555 578899999999999999998764211       11122334468999


Q ss_pred             EEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEe---e----------eccccEEEEe---ecCCEEEEec-CCcEE
Q 009373          256 ITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKV---L----------RHSDWVYGLA---PHDTTVASTS-GSDVY  314 (536)
Q Consensus       256 v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~---~----------~~~~~v~~~~---~~~~~l~~~~-d~~i~  314 (536)
                      |+.+.|    .+.-+++++.||.|..|+++.......   .          .....++++.   .+...++.|+ +|.|.
T Consensus       294 v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~  373 (555)
T KOG1587|consen  294 VTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVY  373 (555)
T ss_pred             eEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEE
Confidence            999999    235699999999999998764332111   0          1122345555   4556677777 68877


Q ss_pred             EEe---CCCCc-----EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc-cCccccccceeeeccCCCCCeEE
Q 009373          315 IWD---TNSGC-----LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNS  385 (536)
Q Consensus       315 i~d---~~~~~-----~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~  385 (536)
                      --+   .+.+.     ....+ ..|.+.|+++.++|-+..++..+.|.+++||... ..      .++..+..+...|++
T Consensus       374 ~~~r~g~~~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~------~Pl~~~~~~~~~v~~  446 (555)
T KOG1587|consen  374 KGCRKGYTPAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA------SPLLSLDSSPDYVTD  446 (555)
T ss_pred             EEeccCCcccccccccccccc-cccCcceEeeecCCCccceeeeeccceeEeccccCCC------Ccchhhhhccceeee
Confidence            633   33222     11122 3588999999999987665555559999999977 44      577778888888999


Q ss_pred             EEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee--eccccccEEEEEecCCEEEEecCCCe
Q 009373          386 LAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM--LHGFECNLLSVDIGADRIVCGGEEGI  460 (536)
Q Consensus       386 l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~Dg~  460 (536)
                      ++|+|   ..++++..||.|.+||+......                 +...  ..........++..+..|+.|+..|.
T Consensus       447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~  509 (555)
T KOG1587|consen  447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGT  509 (555)
T ss_pred             eEEcCcCceEEEEEcCCCceehhhhhccccC-----------------CcccccccccccceeecCCCCcEEEEecCCCc
Confidence            99986   68999999999999999753111                 1111  11111223344455779999999999


Q ss_pred             EEEEeCCch
Q 009373          461 VRIWNFSQA  469 (536)
Q Consensus       461 i~vW~~~~~  469 (536)
                      +.+|++...
T Consensus       510 ~~~~~l~~~  518 (555)
T KOG1587|consen  510 THILKLSES  518 (555)
T ss_pred             EEEEEcCch
Confidence            999999743

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.7e-16  Score=140.36  Aligned_cols=298  Identities=13%  Similarity=0.137  Sum_probs=202.0

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC------ceeeee-CCCCceEEEEec--CCCEEEEEeCCC
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------FSIASS-KPLGCTIRAVAA--DKKLLVAGGTDG  220 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~------~~~~~~-~~~~~~v~~~~~--~~~~l~sg~~dg  220 (536)
                      ..+-+.+|.+.|.++.|+.++++|++|+.|..+++|+++..      +++... ..|...|.|+.+  .+..+++|+.++
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            34578899999999999999999999999999999998643      444433 456678888874  467999999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCC---ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce-EeEee---ec
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH---EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CLKVL---RH  291 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~-~~~~~---~~  291 (536)
                      +|..-|+++..              ......|   .+.|..+..  ..+.|++.+.+|.|.+||.+... ....+   ..
T Consensus       128 ~VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~  193 (609)
T KOG4227|consen  128 TVIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS  193 (609)
T ss_pred             eeEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence            99999998753              1122233   348888877  55889999999999999987654 22211   23


Q ss_pred             cccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcE-EEEEc--ccc---ccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          292 SDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCL-LTVVN--GAH---VGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       292 ~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~--~~~---~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                      .....++.  | ...+|++.+ .+.+-+||.+.... +....  .+.   ...-.++.|+|+|..|.+--....-.+||+
T Consensus       194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence            33333333  3 345666666 68899999987532 11110  011   122356789999998887766666677888


Q ss_pred             ccCccccccceeeeccCC-------CCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCC-CCC---ceeeEEeeC
Q 009373          362 INDCTEANVLLVATWIPH-------TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPT-SGK---RVSRVIEVE  429 (536)
Q Consensus       362 ~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~-~~~---~~~~~~~~~  429 (536)
                      -...     .++..+ .|       ...+.+++|-+ .-+++|+.+-.|++|.+.......... .+.   ....-.-+.
T Consensus       274 ~S~R-----~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~  347 (609)
T KOG4227|consen  274 ISQR-----CFVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE  347 (609)
T ss_pred             eccc-----ceeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence            7652     122222 22       23566777855 468999999999999987543322211 111   111112335


Q ss_pred             CCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCC
Q 009373          430 PPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       430 ~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~  467 (536)
                      ....++.||...+..+.|++.  +|++.|-...+++|.-.
T Consensus       348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            556788999988888877765  88899999999999643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.74  E-value=1.2e-16  Score=142.72  Aligned_cols=208  Identities=17%  Similarity=0.261  Sum_probs=159.7

Q ss_pred             eeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009373          152 DVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      -.+.||+++|..++|+| +...+||||.|.+|.||++..+.....+                                  
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l----------------------------------  120 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL----------------------------------  120 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc----------------------------------
Confidence            46679999999999999 4668999999999999998765333221                                  


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV  305 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l  305 (536)
                                  ..++..+.+|...|--++|+   .+.|++++.|.+|.+||+.+++.+.++.|.+-|++++  .+|.++
T Consensus       121 ------------tepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l  188 (472)
T KOG0303|consen  121 ------------TEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLL  188 (472)
T ss_pred             ------------ccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCcee
Confidence                        12566688999999999994   4789999999999999999999999999999999988  789999


Q ss_pred             EEec-CCcEEEEeCCCCcEEEEEcccccc-ceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCccccccceeeeccCCC
Q 009373          306 ASTS-GSDVYIWDTNSGCLLTVVNGAHVG-NTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      ++++ |..|+|||.++++.+..-. +|.+ .-..+.|-.+|.++-||-   .+..+-+||..+-..+   ....++.. .
T Consensus       189 ~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP---~~~~elDt-S  263 (472)
T KOG0303|consen  189 CTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP---IALQELDT-S  263 (472)
T ss_pred             eeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEeccCceeeeccccccccceeccCcccccCc---ceeEEecc-C
Confidence            9988 9999999999999998874 5665 455666888888555553   3678999998776422   23333332 3


Q ss_pred             CCeEEEEEcC--CeEE-EEeCCCcEEEEECCcc
Q 009373          381 GPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKL  410 (536)
Q Consensus       381 ~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~  410 (536)
                      +.|.-=-|++  +.++ +|-.|+.|+.|.+...
T Consensus       264 nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  264 NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            3343334454  4554 4556999999998764

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.74  E-value=1.6e-14  Score=144.22  Aligned_cols=307  Identities=30%  Similarity=0.479  Sum_probs=219.4

Q ss_pred             ceeeeeCcc-ccEEEEEE-ecCCC-EEEEEeC-CCcEEEEECCC-CceeeeeCCCCceEEE--EecCCCEEEEEeC-CCc
Q 009373          150 SIDVLYGHT-EAVLTVFV-LASAK-LLFTSGY-DSIVRMWHLED-GFSIASSKPLGCTIRA--VAADKKLLVAGGT-DGF  221 (536)
Q Consensus       150 ~~~~l~~h~-~~V~~v~~-~~~~~-~l~sgs~-dg~v~iwd~~~-~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~-dg~  221 (536)
                      .+..+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...+..  +.+++..+++++. |+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  179 (466)
T COG2319         100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT  179 (466)
T ss_pred             eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence            456666644 37777777 77777 5555455 99999999998 7788888888877764  4588888888886 999


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCCeEEEEeCCCceEeE-eee-cccc-E
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCLK-VLR-HSDW-V  295 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~iwd~~~~~~~~-~~~-~~~~-v  295 (536)
                      +++|+...+             .....+.+|...|.++++  ++. .+++++.|+.|++||...+.... .+. |... +
T Consensus       180 ~~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  246 (466)
T COG2319         180 IKLWDLRTG-------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV  246 (466)
T ss_pred             eEEEEcCCC-------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCccee
Confidence            999998653             255566679999999999  444 45555999999999988777777 454 5544 4


Q ss_pred             EEEeecCCEEEEec-CCcEEEEeCCCCcE-EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          296 YGLAPHDTTVASTS-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       296 ~~~~~~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      ..+.+++.++++++ ++.+++||+..... ...+ .+|...+.++.|+|++..+++++.|+.+.+||.....      ..
T Consensus       247 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------~~  319 (466)
T COG2319         247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK------LL  319 (466)
T ss_pred             EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc------eE
Confidence            45668887777666 89999999997765 4444 4688999999999988888889999999999888773      23


Q ss_pred             eec--cCCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec
Q 009373          374 ATW--IPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG  448 (536)
Q Consensus       374 ~~~--~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  448 (536)
                      ...  ..|...+..+.+.+  ..++.+ ..|+.+.+|++.....                   ......... +..+.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------------------~~~~~~~~~-~~~~~~~  379 (466)
T COG2319         320 SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP-------------------LKTLEGHSN-VLSVSFS  379 (466)
T ss_pred             EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce-------------------eEEecCCce-EEEEEEC
Confidence            333  47887899999932  355555 6789999999987420                   001111111 3333332


Q ss_pred             C-CEEE-EecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373          449 A-DRIV-CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  506 (536)
Q Consensus       449 ~-~~l~-sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  506 (536)
                      . ..++ .+..++.+.+|+..............          .......+++++..++.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  429 (466)
T COG2319         380 PDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT----------SRVTSLDFSPDGKSLAS  429 (466)
T ss_pred             CCCCEEEEecCCCceEEEecccCeeeeeccCCC----------CcEEEEEECCCCcEEEE
Confidence            2 3333 47899999999999876654433321          34456677777777765

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=149.20  Aligned_cols=335  Identities=17%  Similarity=0.223  Sum_probs=223.5

Q ss_pred             cceeeeeCccccEEEEEEecCC---CEEEEEeCCCcEEEEECCCCceeeeeC----------------------------
Q 009373          149 YSIDVLYGHTEAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDGFSIASSK----------------------------  197 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~---~~l~sgs~dg~v~iwd~~~~~~~~~~~----------------------------  197 (536)
                      ..++.+.+|..+++.+.+.|..   .++++++.||+|++||...+..++++.                            
T Consensus        48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~  127 (792)
T KOG1963|consen   48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY  127 (792)
T ss_pred             hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence            4578999999999999999864   478899999999999987664433310                            


Q ss_pred             ---------------------------------------------------------------------------CCCc-
Q 009373          198 ---------------------------------------------------------------------------PLGC-  201 (536)
Q Consensus       198 ---------------------------------------------------------------------------~~~~-  201 (536)
                                                                                                 .|.- 
T Consensus       128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~  207 (792)
T KOG1963|consen  128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN  207 (792)
T ss_pred             eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc
Confidence                                                                                       0111 


Q ss_pred             -eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373          202 -TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       202 -~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw  278 (536)
                       .+.+++|+++++++|..||.|.+|.--..         .........+.-|...|.+++|  +|.+|++|+..|.+.+|
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGS---------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEecccc---------ccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence             23466789999999999999999974220         1122344556678999999999  89999999999999999


Q ss_pred             eCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc----------cccccceEEEEEeCCCC
Q 009373          279 DRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN----------GAHVGNTKSLARSHTGD  345 (536)
Q Consensus       279 d~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~----------~~~~~~i~~l~~~~~~~  345 (536)
                      .+.+++....-+-.++|..+.  |++.+.+... |+.|.+....+.+...++.          ....+-.+.++++|.-+
T Consensus       279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            999998333233778887766  8888776665 9999999876655444432          11244567888999777


Q ss_pred             EEEEEcCCCcEEEEEcccCccccccceeeecc-----CCCCCeEEEEEc--CCeEEEEeC--------C--CcEEEEECC
Q 009373          346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWI-----PHTGPVNSLAFE--FPWLVSAAG--------D--GKLSLIDVR  408 (536)
Q Consensus       346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~--~~~l~s~s~--------d--g~i~vwd~~  408 (536)
                      .++-.+..|.|.+||+.+.....++.....-.     .+.-.+++++.+  +.+++|+-.        |  -.+++|-..
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            88889999999999998875433322221111     112245555544  467766542        2  246778766


Q ss_pred             cccccCCCCCCCceeeEEeeCCCeeeeccccccE--EEEEe--cCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccc
Q 009373          409 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL--LSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRL  484 (536)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~--~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~  484 (536)
                      ...+.+...              ..+...|....  +++..  .....+|+|.||.++||-+...+.+......---...
T Consensus       439 ~~~kt~~L~--------------T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i  504 (792)
T KOG1963|consen  439 PNSKTFILN--------------TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI  504 (792)
T ss_pred             CCcceeEEE--------------EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence            543332211              01123344333  33332  2238999999999999999766655543332222222


Q ss_pred             hhHHHhhhhccccccCCCCcce
Q 009373          485 ENRMRRRKLQTEMSSKGGRTDQ  506 (536)
Q Consensus       485 ~~~~~~~~~~~~~~~~g~~~~~  506 (536)
                      ....+......+|+.||..++.
T Consensus       505 ~sy~k~~i~a~~fs~dGslla~  526 (792)
T KOG1963|consen  505 GSYHKTPITALCFSQDGSLLAV  526 (792)
T ss_pred             eccccCcccchhhcCCCcEEEE
Confidence            2235667789999999977764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.4e-16  Score=146.65  Aligned_cols=212  Identities=16%  Similarity=0.134  Sum_probs=150.9

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CCCCceEEEEe----cCCCEEEEEeCCCcEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA----ADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~----~~~~~l~sg~~dg~i~v  224 (536)
                      .-+.|.||++.|.|+.|+.+|.+|++||.|-.+.|||.-..+.+..+ .+|...|.+..    .++..+++|+.|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            45789999999999999999999999999999999999877777766 67888888776    35679999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE-------eEeee--c-
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-------LKVLR--H-  291 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~--~-  291 (536)
                      +|+...+....+   .........+..|...|..|+.   .++.+.+++.||+|+-+|++....       ...+.  + 
T Consensus       122 fdl~~~~~~~~d---~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~  198 (758)
T KOG1310|consen  122 FDLDSSKEGGMD---HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP  198 (758)
T ss_pred             Eecccccccccc---cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence            999753211100   0112345556789999999988   447899999999999999976321       11111  1 


Q ss_pred             ---cccEEEEe-ecCCEEEEec-CCcEEEEeCCCC------------------cEEEEEcccccc-----------ceEE
Q 009373          292 ---SDWVYGLA-PHDTTVASTS-GSDVYIWDTNSG------------------CLLTVVNGAHVG-----------NTKS  337 (536)
Q Consensus       292 ---~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~------------------~~~~~~~~~~~~-----------~i~~  337 (536)
                         ......++ .+..+|++|+ +--.++||.+..                  .++..+..+|..           .++-
T Consensus       199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY  278 (758)
T ss_pred             hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence               11223344 4566777777 788999994321                  123333333331           2456


Q ss_pred             EEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          338 LARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       338 l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +.|+|+|.-|++.-..-.|+++|+...
T Consensus       279 vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             EEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            789999987777666667999988543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.72  E-value=3.3e-16  Score=145.30  Aligned_cols=257  Identities=15%  Similarity=0.143  Sum_probs=182.4

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCCC-ce---EEEEe----cCCCEEEEEeCCCcEEEEE
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLG-CT---IRAVA----ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~-~~---v~~~~----~~~~~l~sg~~dg~i~vwd  226 (536)
                      -|...|.|+.|+.+...+.+++.+..+.-||+.+... +..+.... .+   +...+    .....++.++.||.+.+.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~   91 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN   91 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence            4667778999987777777666555555555543321 11111100 01   11111    1235789999999998886


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-eccccEEEEe--ec
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA--PH  301 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~--~~  301 (536)
                      -.              .........|.+.+.+-.|  +|.-|++++.||.|++|.- +|-...++ +...+|+|++  |+
T Consensus        92 k~--------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~  156 (737)
T KOG1524|consen   92 KS--------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPN  156 (737)
T ss_pred             cc--------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCC
Confidence            32              2234456789999999999  7889999999999999985 34333333 3677899988  78


Q ss_pred             CCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          302 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       302 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      .+-++-+..+.+.|=-+.....+...+ +|.+-|.++.|++..+++++|++|-..+|||-...       .+.+-..|..
T Consensus       157 S~~vl~c~g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------~Lf~S~~~ey  228 (737)
T KOG1524|consen  157 SNSIVFCQGGHISIKPLAANSKIIRWR-AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------NLFTSAAEEY  228 (737)
T ss_pred             CCceEEecCCeEEEeecccccceeEEe-ccCcEEEEeecCccccceeecCCceeEEeecccCc-------ccccCChhcc
Confidence            888888888888888887776666665 69999999999999999999999999999996554       5667788999


Q ss_pred             CeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCC
Q 009373          382 PVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEG  459 (536)
Q Consensus       382 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg  459 (536)
                      +|++++|.|+.++..+.-.++++=..                              ..++|+.+++  +|..+++|...|
T Consensus       229 ~ITSva~npd~~~~v~S~nt~R~~~p------------------------------~~GSifnlsWS~DGTQ~a~gt~~G  278 (737)
T KOG1524|consen  229 AITSVAFNPEKDYLLWSYNTARFSSP------------------------------RVGSIFNLSWSADGTQATCGTSTG  278 (737)
T ss_pred             ceeeeeeccccceeeeeeeeeeecCC------------------------------CccceEEEEEcCCCceeeccccCc
Confidence            99999999976555544445552211                              2245555555  455899998888


Q ss_pred             eEEEEe
Q 009373          460 IVRIWN  465 (536)
Q Consensus       460 ~i~vW~  465 (536)
                      .+.+=-
T Consensus       279 ~v~~A~  284 (737)
T KOG1524|consen  279 QLIVAY  284 (737)
T ss_pred             eEEEee
Confidence            876633

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=1.2e-15  Score=149.78  Aligned_cols=252  Identities=16%  Similarity=0.173  Sum_probs=176.5

Q ss_pred             eeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCCce--eee----eCCCCceEEEEe----cCCCEEEEEeCCC
Q 009373          152 DVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFS--IAS----SKPLGCTIRAVA----ADKKLLVAGGTDG  220 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~~--~~~----~~~~~~~v~~~~----~~~~~l~sg~~dg  220 (536)
                      .....-...|+|+.|+|. ..+++.|.++|.|.+||+..+..  ...    ...|..+++++.    +.+.-+++++.||
T Consensus       236 e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG  315 (555)
T KOG1587|consen  236 ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG  315 (555)
T ss_pred             eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC
Confidence            333445678999999995 56888999999999999987754  222    245777887775    3346699999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCC---Cce-----EeEee
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA---LLK-----CLKVL  289 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~---~~~-----~~~~~  289 (536)
                      .|..|+++.-............... ..-..-...+++++|   ++..++.|+.+|.|.-=+..   ...     ....+
T Consensus       316 ~i~~W~~~~l~~P~e~~~~~~~~~~-~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~  394 (555)
T KOG1587|consen  316 SICSWDTDMLSLPVEGLLLESKKHK-GQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTF  394 (555)
T ss_pred             cEeeeeccccccchhhccccccccc-ccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccc
Confidence            9999987643321111111000000 001122346788888   78899999999999873322   222     11122


Q ss_pred             e-ccccEEEEe---ecCCEEEEecCCcEEEEeCC-CCcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEccc
Q 009373          290 R-HSDWVYGLA---PHDTTVASTSGSDVYIWDTN-SGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIIN  363 (536)
Q Consensus       290 ~-~~~~v~~~~---~~~~~l~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~  363 (536)
                      . |.+.|+++.   .....+.+++|.++++|... ...++..+. .+...+++++|||... .|+++..||.+.+||+..
T Consensus       395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             cccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence            2 888999998   34556667779999999988 666666664 4777799999999764 677888899999999977


Q ss_pred             CccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      ...    .++.+...+....+.+.|++  ..|++|...|++.+|++..
T Consensus       474 ~~~----~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  474 DDE----EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccc----CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            633    34555555566667777765  6899999999999999975

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.71  E-value=4.6e-15  Score=127.64  Aligned_cols=249  Identities=18%  Similarity=0.219  Sum_probs=172.0

Q ss_pred             eeeeeCccccEEEEEEec--C-CCEEEEEeC----CCcEEEEECC--CCceeeee-CCCCceEEEEe--cCC-----CEE
Q 009373          151 IDVLYGHTEAVLTVFVLA--S-AKLLFTSGY----DSIVRMWHLE--DGFSIASS-KPLGCTIRAVA--ADK-----KLL  213 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~--~-~~~l~sgs~----dg~v~iwd~~--~~~~~~~~-~~~~~~v~~~~--~~~-----~~l  213 (536)
                      +..+..| -.++++.|+.  + +.+||.|+.    .+.|.|-.+.  +++.+..- ..|.-++..+.  |+.     ++|
T Consensus        38 iy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL  116 (364)
T KOG0290|consen   38 IYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL  116 (364)
T ss_pred             EEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence            4444433 4577888873  2 457888875    4566665543  44433322 34555555544  443     356


Q ss_pred             EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE----e
Q 009373          214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC----L  286 (536)
Q Consensus       214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~----~  286 (536)
                      ++.+  ..+++|.+......... ..   .-....-..+.++++++.|   +++++.++|-|-+..|||++++..    .
T Consensus       117 ATs~--D~LRlWri~~ee~~~~~-~~---~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkT  190 (364)
T KOG0290|consen  117 ATSS--DFLRLWRIGDEESRVEL-QS---VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKT  190 (364)
T ss_pred             hccc--CeEEEEeccCcCCceeh-hh---hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceee
Confidence            5544  47999998643211100 00   0000112246679999999   789999999999999999998733    2


Q ss_pred             EeeeccccEEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEcc-cc-ccceEEEEEeCCC-CEEEEEcCC-CcEEE
Q 009373          287 KVLRHSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNG-AH-VGNTKSLARSHTG-DFLFTGGED-GAIHM  358 (536)
Q Consensus       287 ~~~~~~~~v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~-~~~i~~l~~~~~~-~~l~tg~~d-g~i~i  358 (536)
                      +.+.|..+|..++..   -..+++.+ ||++++||++..+.-..+.+ +. ..+...++|++.. +++|+-..| ..|.|
T Consensus       191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence            334599999999932   35677766 99999999998765554432 22 4577888898754 677776655 45999


Q ss_pred             EEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373          359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      .|++.+.     .++..+.+|.+.|++++|.|   ..|++++.|..+.+||+....
T Consensus       271 LDiR~P~-----tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~  321 (364)
T KOG0290|consen  271 LDIRVPC-----TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMP  321 (364)
T ss_pred             EEecCCC-----cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccc
Confidence            9999885     67899999999999999976   799999999999999998753

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.71  E-value=1.5e-15  Score=144.45  Aligned_cols=264  Identities=14%  Similarity=0.193  Sum_probs=190.6

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  237 (536)
                      .|..++|-|||..|+.+. +..+.+||...|..+.++.+|...|.+++  .+|+.+++|+.|..|.+|+-.-        
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl--------   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL--------   84 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc--------
Confidence            789999999999887765 45799999999999999999999998876  7999999999999999998522        


Q ss_pred             cCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCc
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSD  312 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~  312 (536)
                            .-. --..|.+.|.|+.|++  ..|++++-. ..-+|...... +...+....+.+.+  .+|.+++.|- +|+
T Consensus        85 ------EG~-LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGT  155 (1081)
T KOG1538|consen   85 ------EGI-LKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGT  155 (1081)
T ss_pred             ------cce-eeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCce
Confidence                  112 2347999999999966  567887753 45678765432 22333445556655  7899999998 899


Q ss_pred             EEEEeCCCCcEEEEE-ccccccceEEEEEeCCC-----CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEE
Q 009373          313 VYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTG-----DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  386 (536)
Q Consensus       313 i~i~d~~~~~~~~~~-~~~~~~~i~~l~~~~~~-----~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  386 (536)
                      |.+-+....+.+..- +.|...+|.+++|+|..     ..+++.....++.+|.+....       +..-..-.-...|+
T Consensus       156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-------Igk~r~L~FdP~Ci  228 (1081)
T KOG1538|consen  156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-------IGKDRALNFDPCCI  228 (1081)
T ss_pred             EEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-------ecccccCCCCchhh
Confidence            999865443333222 24577899999999964     478888888888888876542       21111112233566


Q ss_pred             EE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--ecCCEEEEecCCCeEE
Q 009373          387 AF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGADRIVCGGEEGIVR  462 (536)
Q Consensus       387 ~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~Dg~i~  462 (536)
                      .+  ++.++..|+.|+.+++|.-+.. ..                   .+.......++++.  |++++++.|+.||+|.
T Consensus       229 sYf~NGEy~LiGGsdk~L~~fTR~Gv-rL-------------------GTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  229 SYFTNGEYILLGGSDKQLSLFTRDGV-RL-------------------GTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             eeccCCcEEEEccCCCceEEEeecCe-EE-------------------eeccccceeEEEEEEccCCceEEEEEccCeee
Confidence            66  4589999999999999975431 11                   11222334555554  6667999999999999


Q ss_pred             EEeCCc
Q 009373          463 IWNFSQ  468 (536)
Q Consensus       463 vW~~~~  468 (536)
                      .|++..
T Consensus       289 CyNl~f  294 (1081)
T KOG1538|consen  289 CYNLIF  294 (1081)
T ss_pred             hhhhHH
Confidence            999764

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=1.3e-15  Score=130.85  Aligned_cols=252  Identities=20%  Similarity=0.248  Sum_probs=177.3

Q ss_pred             ccceeeeeCccccEEEEEEecCC-CEEEEEeCC-------CcEEEEECCCCc---------eeeeeC-CCCceEEE--Ee
Q 009373          148 RYSIDVLYGHTEAVLTVFVLASA-KLLFTSGYD-------SIVRMWHLEDGF---------SIASSK-PLGCTIRA--VA  207 (536)
Q Consensus       148 ~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~d-------g~v~iwd~~~~~---------~~~~~~-~~~~~v~~--~~  207 (536)
                      .....+|..|.+.|..++-+|-. ++|+|+..+       -.+.||.+....         ++..+. .+-+.+.|  +.
T Consensus        53 ~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~  132 (370)
T KOG1007|consen   53 ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWE  132 (370)
T ss_pred             hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEc
Confidence            34456888899999999999965 466665442       246799986432         222332 22234444  45


Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCc
Q 009373          208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALL  283 (536)
Q Consensus       208 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~  283 (536)
                      |++..+++-. |..|.+|++..+......+..+..       .+|....++-+|    +++.+++ ..|+++..||+++.
T Consensus       133 Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s-------~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~  203 (370)
T KOG1007|consen  133 PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES-------AEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTM  203 (370)
T ss_pred             CCCCeeEEec-cCceEEEEcccCcchheeeccccc-------ccccceecccccCCCCccceEEE-eCCCcEEEEEccch
Confidence            9888888766 889999999876532221111111       124555666677    4455655 45899999999999


Q ss_pred             eEeEeee--ccccEEEEe--ecCC-EEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC-CEEEEEcCCCc
Q 009373          284 KCLKVLR--HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGA  355 (536)
Q Consensus       284 ~~~~~~~--~~~~v~~~~--~~~~-~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~  355 (536)
                      ++...++  |...|..+.  |+.+ +|++++ ||.|++||.+..+ ++..+ .+|...|.++.|+|.. +++++|+.|..
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-PGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-CCCceEEEEEEecCccceEEEecCCCce
Confidence            9888887  888888888  5444 566666 7999999998765 45555 4799999999999954 68889999999


Q ss_pred             EEEEEcccCccc------------------cc-----cceeeeccCCCCCeEEEEEc---CCeEEEEeCCCcEEEEECCc
Q 009373          356 IHMYEIINDCTE------------------AN-----VLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       356 i~iwd~~~~~~~------------------~~-----~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~  409 (536)
                      |.+|....-..+                  ..     -..+.++..|...|++++|+   |-.+++-|.||.+.|=.+..
T Consensus       283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence            999976432211                  01     12345678899999999996   46888999999998877654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.4e-16  Score=137.58  Aligned_cols=247  Identities=17%  Similarity=0.197  Sum_probs=171.0

Q ss_pred             ceeeeeCccccEEEEEEec--CCCEEEEEeCCCcEEEEECCCCceeeee--CCCC-ceEEEEe--cCCCEEEEEe----C
Q 009373          150 SIDVLYGHTEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLG-CTIRAVA--ADKKLLVAGG----T  218 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~-~~v~~~~--~~~~~l~sg~----~  218 (536)
                      .+..+++|...+..+.|..  ....+.+|+.||+|++||+.+......+  ..+. .+..++.  ..++.+++|.    .
T Consensus        62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s  141 (376)
T KOG1188|consen   62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRS  141 (376)
T ss_pred             hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence            4678899999999999987  4678999999999999999877554433  3333 4556666  4677888875    3


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCce----EeEeeec
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLK----CLKVLRH  291 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~  291 (536)
                      +-.|.+||++....           ....-...|.+.|+++.|   +++.|++||.||.|.+||+....    ...++++
T Consensus       142 ~A~v~lwDvR~~qq-----------~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~  210 (376)
T KOG1188|consen  142 DASVVLWDVRSEQQ-----------LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH  210 (376)
T ss_pred             ceEEEEEEeccccc-----------hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc
Confidence            67799999976531           122224579999999999   77999999999999999987542    3455667


Q ss_pred             cccEEEEeec--C--CEEEEecCCcEEEEeCCCCcEEEEEccccc-----------cceEEEEEeC-CCCEEEEEcC-CC
Q 009373          292 SDWVYGLAPH--D--TTVASTSGSDVYIWDTNSGCLLTVVNGAHV-----------GNTKSLARSH-TGDFLFTGGE-DG  354 (536)
Q Consensus       292 ~~~v~~~~~~--~--~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~~i~~l~~~~-~~~~l~tg~~-dg  354 (536)
                      ...|.++.+.  +  +....+...+..+|+++.+.....+.....           ..+... .+| ++..++.++. -|
T Consensus       211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n  289 (376)
T KOG1188|consen  211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSN  289 (376)
T ss_pred             cceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccC
Confidence            7778877733  2  334444489999999998876555432100           011111 123 3445555444 56


Q ss_pred             cEEEEEcccCccccccceeeeccC-CCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373          355 AIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~  408 (536)
                      ...++-+...........+..+.+ |...|+++.|.  ..+++||+.||.+.+|...
T Consensus       290 ~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  290 KGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             ceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            666666554322233345555666 77888899886  4899999999999999964

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1.6e-15  Score=151.46  Aligned_cols=273  Identities=16%  Similarity=0.155  Sum_probs=181.9

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee---CCccCEEEEEE----eCCEEEEEecCCeE
Q 009373          203 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW---EHEGPITSLAL----DLTRIYSGSWDMTV  275 (536)
Q Consensus       203 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~----~~~~l~s~s~dg~i  275 (536)
                      +..++|-...++++...-.|.|||.+.+..             ...+.   .....|+.+.+    |...+++|+.||.|
T Consensus      1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~-------------l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvI 1135 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRL-------------LNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVI 1135 (1387)
T ss_pred             eeeecCCCceeEEcCCcceEEEEecccCce-------------eccccCCCCCCCccceeeeecccchhheeeeccCceE
Confidence            445556667788888888999999987642             11121   23457888888    44689999999999


Q ss_pred             EEEeCC-----CceEeEeee----------ccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEE
Q 009373          276 RVWDRA-----LLKCLKVLR----------HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLA  339 (536)
Q Consensus       276 ~iwd~~-----~~~~~~~~~----------~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~  339 (536)
                      +||+--     ..+.+.-..          ..+-+.... ..|.++++|.-..|+|||.........+..+....++++.
T Consensus      1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred             EEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence            999632     222222221          112233333 4556666665688999999999988888766777788876


Q ss_pred             EeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC--eEEEEEcC---CeEEEEeCCCcEEEEECCccccc
Q 009373          340 RSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP--VNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       340 ~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      -+. .|+.+++|..||.|++||.+.....   ..+...+.|...  |..+.+.+   ..|++|+.||.|++||++.....
T Consensus      1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e 1292 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE 1292 (1387)
T ss_pred             ccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc
Confidence            543 4689999999999999999987432   456777888887  99999964   57999999999999999973111


Q ss_pred             CCCCCCCceeeEEeeCCCeeeec--cccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhh
Q 009373          414 GRPTSGKRVSRVIEVEPPQRMLH--GFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRR  491 (536)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (536)
                      ....              ...-.  |.....+.++.+...+|||+. +.|+||++.....-...  ...+.  .......
T Consensus      1293 ~~~~--------------iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k--~n~~F--~~q~~gs 1353 (1387)
T KOG1517|consen 1293 TFLT--------------IVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIK--YNPGF--MGQRIGS 1353 (1387)
T ss_pred             ccce--------------eeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccc--cCccc--ccCcCCC
Confidence            1000              00001  212333444445569999998 99999999864332211  11111  1122333


Q ss_pred             hhccccccCCCCcceeEee
Q 009373          492 KLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       492 ~~~~~~~~~g~~~~~~~~~  510 (536)
                      ..+++|+|.--++|+++.+
T Consensus      1354 ~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1354 VSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred             cceeeecchhHhhhhccCC
Confidence            4788999998888877443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=2.4e-15  Score=152.52  Aligned_cols=271  Identities=14%  Similarity=0.192  Sum_probs=176.8

Q ss_pred             CceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC
Q 009373          190 GFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT  264 (536)
Q Consensus       190 ~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~  264 (536)
                      |..+.+++.|...+..++   +++.++++||.||+|++|+...-...      ........++..-.+.+.++.+  +++
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~------~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE------GGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC------cceeeeeEEEeccCCceEEEEeccCCC
Confidence            567777888887776554   56689999999999999998653210      0112233334334567777766  889


Q ss_pred             EEEEEecCCeEEEEeCCCce-------EeEeee--ccccEEEEe----ecCC-EEEEec-CCcEEEEeCCCCcEEEEEcc
Q 009373          265 RIYSGSWDMTVRVWDRALLK-------CLKVLR--HSDWVYGLA----PHDT-TVASTS-GSDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       265 ~l~s~s~dg~i~iwd~~~~~-------~~~~~~--~~~~v~~~~----~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~  329 (536)
                      .++.++.||.|++.++....       +.....  ..+.+.++.    .... .++.+. .+.|..||+++.....+++.
T Consensus      1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            99999999999999987521       111111  445566554    2233 555566 68999999998766555432


Q ss_pred             -ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc-CCCCCeEEEEEcC-----CeEEEEe--CCC
Q 009373          330 -AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF-----PWLVSAA--GDG  400 (536)
Q Consensus       330 -~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~-----~~l~s~s--~dg  400 (536)
                       ...+.|++++.+|.+.+++.|+..|.+.+||++-+      .++..+. ++..+|..+..++     ...++++  ..+
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~------~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR------VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecC------ceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence             24578999999999999999999999999999988      4555443 5567888888764     3444444  478


Q ss_pred             cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecC-CEEEEecCCCeEEEEeCCchhhH
Q 009373          401 KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGA-DRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       401 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      .|.+|++.++...........+..+....+.......+. ..+.+.-.++ ..+.+||.|+.||.||....+..
T Consensus      1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence            899999998755443322211111111011000000111 1122222333 38999999999999999876544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.70  E-value=8.6e-16  Score=137.44  Aligned_cols=197  Identities=20%  Similarity=0.285  Sum_probs=144.7

Q ss_pred             EeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceE-------eEeee-ccccEEEEeec---CCEEEEec-CCc
Q 009373          248 RLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKC-------LKVLR-HSDWVYGLAPH---DTTVASTS-GSD  312 (536)
Q Consensus       248 ~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~  312 (536)
                      .+.||+++|..++|   +...+++||.|.+|.||++..+..       +..+. |...|--+.++   .+.|++++ |.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            46699999999999   668999999999999999875432       33333 77777777733   34555544 999


Q ss_pred             EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC--CeEEEEEc-
Q 009373          313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFE-  389 (536)
Q Consensus       313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~-  389 (536)
                      |.+||+.+|+.+.++.  |...|+++.|+.+|.+|++.+.|..|+|||.+.+      ..+..-.+|.+  +...+-.. 
T Consensus       156 v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~------~~v~e~~~heG~k~~Raifl~~  227 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG------TVVSEGVAHEGAKPARAIFLAS  227 (472)
T ss_pred             EEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCC------cEeeecccccCCCcceeEEecc
Confidence            9999999999998885  9999999999999999999999999999999999      56666677765  33344333 


Q ss_pred             CCeEEEEe----CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeEE
Q 009373          390 FPWLVSAA----GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVR  462 (536)
Q Consensus       390 ~~~l~s~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~  462 (536)
                      +. +++.+    .+..+-+||..+...+..                ...+.+.++..+- -++++   ..++|-.|+.||
T Consensus       228 g~-i~tTGfsr~seRq~aLwdp~nl~eP~~----------------~~elDtSnGvl~P-FyD~dt~ivYl~GKGD~~IR  289 (472)
T KOG0303|consen  228 GK-IFTTGFSRMSERQIALWDPNNLEEPIA----------------LQELDTSNGVLLP-FYDPDTSIVYLCGKGDSSIR  289 (472)
T ss_pred             Cc-eeeeccccccccceeccCcccccCcce----------------eEEeccCCceEEe-eecCCCCEEEEEecCCcceE
Confidence            35 54444    367899999887533211                1122233332222 23333   567888899999


Q ss_pred             EEeCCchh
Q 009373          463 IWNFSQAF  470 (536)
Q Consensus       463 vW~~~~~~  470 (536)
                      .|.+.+..
T Consensus       290 YyEit~d~  297 (472)
T KOG0303|consen  290 YFEITNEP  297 (472)
T ss_pred             EEEecCCC
Confidence            99998765

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=4.2e-15  Score=139.85  Aligned_cols=234  Identities=16%  Similarity=0.241  Sum_probs=172.9

Q ss_pred             eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC----CEEE
Q 009373          194 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TRIY  267 (536)
Q Consensus       194 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~  267 (536)
                      ..+.+|.+.|.+++  |.|..|++|+.||+|+||.+.++.             ++.+. ...+.|.|++|++    ..|+
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------------cvr~~-~~d~~I~~vaw~P~~~~~vLA  459 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------------CVRTV-QFDSEIRSVAWNPLSDLCVLA  459 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------------EEEEE-eecceeEEEEecCCCCceeEE
Confidence            34578999999887  889999999999999999998874             33222 2345788888833    2233


Q ss_pred             EEecC--------------------------------CeEEEEeCCCc---e--EeEeeeccccEEEEe--ecCCEEEEe
Q 009373          268 SGSWD--------------------------------MTVRVWDRALL---K--CLKVLRHSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       268 s~s~d--------------------------------g~i~iwd~~~~---~--~~~~~~~~~~v~~~~--~~~~~l~~~  308 (536)
                      ++-.+                                +.+..|.-...   +  .-..+.|...|..+.  ..|.+|++.
T Consensus       460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV  539 (733)
T KOG0650|consen  460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV  539 (733)
T ss_pred             EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence            33222                                22233322210   0  112344777777777  457898886


Q ss_pred             c-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          309 S-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       309 ~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      . +   ..|.|+++...+...-|. ...+.|.++.|+|...+|++++. ..|+|||+...      ..+..+......|.
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq------elvKkL~tg~kwiS  611 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ------ELVKKLLTGSKWIS  611 (733)
T ss_pred             ccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCceEEEEec-cceEEEehhHH------HHHHHHhcCCeeee
Confidence            6 2   569999998877665553 36678999999999999988865 56999999887      66777777788899


Q ss_pred             EEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCe
Q 009373          385 SLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGI  460 (536)
Q Consensus       385 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~  460 (536)
                      +++.+|  +.|+.|+.|+.+..+|+.-.                  ..+-+.+.-|...+.++++++.  ++++|+.||+
T Consensus       612 ~msihp~GDnli~gs~d~k~~WfDldls------------------skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt  673 (733)
T KOG0650|consen  612 SMSIHPNGDNLILGSYDKKMCWFDLDLS------------------SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT  673 (733)
T ss_pred             eeeecCCCCeEEEecCCCeeEEEEcccC------------------cchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence            999987  89999999999999999754                  2334456778888999999888  8999999999


Q ss_pred             EEEEeCC
Q 009373          461 VRIWNFS  467 (536)
Q Consensus       461 i~vW~~~  467 (536)
                      +.|+.-.
T Consensus       674 v~Vfhg~  680 (733)
T KOG0650|consen  674 VIVFHGM  680 (733)
T ss_pred             EEEEeee
Confidence            9998643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=3.3e-14  Score=140.10  Aligned_cols=291  Identities=13%  Similarity=0.135  Sum_probs=200.8

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC--C--ceeeeeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--G--FSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~--~--~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ..|+..++|.+++|+++++|+|..||.|.+|.--.  +  .....++=|  ...+++++++|.+|++|+..|.+.+|.++
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35777799999999999999999999999997432  1  223334445  44556667999999999999999999998


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeecc------------c-
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS------------D-  293 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------~-  293 (536)
                      +++.              .-+..-.++|..+.+  +++..+....|..|.+....+.....++.+-            + 
T Consensus       282 T~~k--------------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l  347 (792)
T KOG1963|consen  282 TGKK--------------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL  347 (792)
T ss_pred             CCCc--------------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence            8742              224456788999999  7888888889999999987666554444311            1 


Q ss_pred             -cEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcc----------ccccceEEEEEeCCCCEEEEEcC--------C
Q 009373          294 -WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG----------AHVGNTKSLARSHTGDFLFTGGE--------D  353 (536)
Q Consensus       294 -~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~----------~~~~~i~~l~~~~~~~~l~tg~~--------d  353 (536)
                       ...++.|..+.++-.+ .+.|.+||+-+.+.+..+..          .+...+++++.+..|.+++|+-.        |
T Consensus       348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~  427 (792)
T KOG1963|consen  348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFD  427 (792)
T ss_pred             ceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccC
Confidence             1233446444444444 89999999998877765531          12335778888888999988642        3


Q ss_pred             C--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          354 G--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       354 g--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      |  .+++|..........+ ......+|...+....+.+    ...++++.||.+++|-+............-       
T Consensus       428 ~e~~LKFW~~n~~~kt~~L-~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W-------  499 (792)
T KOG1963|consen  428 GEVSLKFWQYNPNSKTFIL-NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNW-------  499 (792)
T ss_pred             ceEEEEEEEEcCCcceeEE-EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccce-------
Confidence            3  4788987665322111 1233457888777777743    489999999999999996654433322211       


Q ss_pred             eCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCch
Q 009373          428 VEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~  469 (536)
                        .+...-+-|..++.+..|+++ .+++.|.|++|.+||..+.
T Consensus       500 --~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  500 --TCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             --EEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence              111111224455666666665 7888888999999999984

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.68  E-value=2.1e-15  Score=128.02  Aligned_cols=241  Identities=17%  Similarity=0.230  Sum_probs=168.1

Q ss_pred             eeeeeCCCCceEEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE-eCCEEEE
Q 009373          192 SIASSKPLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL-DLTRIYS  268 (536)
Q Consensus       192 ~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~-~~~~l~s  268 (536)
                      +...+++|...+.++.+ .+.+|++|...|.|++|++.+..             ....+. .|...|+.+.. .++.+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r-------------~~~~~r~~g~~~it~lq~~p~d~l~t   72 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTER-------------DLPLIRLFGRLFITNLQSIPNDSLDT   72 (323)
T ss_pred             CeeEeccccchheehhhccchhhhcccccceEEEEEeecCc-------------cchhhhhhccceeeceeecCCcchhh
Confidence            34456688888888774 35579999999999999997753             222333 45677888877 5588999


Q ss_pred             EecCCeEEEEeCCCceEeEe--------------e-----------e-----------------------------cccc
Q 009373          269 GSWDMTVRVWDRALLKCLKV--------------L-----------R-----------------------------HSDW  294 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~--------------~-----------~-----------------------------~~~~  294 (536)
                      -+.|+.+.+|++.-+..+..              +           .                             ..+.
T Consensus        73 qgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgs  152 (323)
T KOG0322|consen   73 QGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGS  152 (323)
T ss_pred             cCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCc
Confidence            99999999998754211100              0           0                             0112


Q ss_pred             EEEEe---ec-CC-EEEEec-CCcEEEEeCCCCcEEEEEc---------cccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          295 VYGLA---PH-DT-TVASTS-GSDVYIWDTNSGCLLTVVN---------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       295 v~~~~---~~-~~-~l~~~~-d~~i~i~d~~~~~~~~~~~---------~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      +++..   .. .. ++++|. +|.+.+||+.++..+..++         ..|..++.++.+.+.-..=++|+.+..+..|
T Consensus       153 vmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~  232 (323)
T KOG0322|consen  153 VMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMY  232 (323)
T ss_pred             eeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceee
Confidence            23333   11 22 344555 7999999999984333322         2588899999999876667788888889999


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEE--cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  437 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (536)
                      ++......-......++  ....|..+..  +.+.++++++|+.|+||..++.                   .+...+.-
T Consensus       233 Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl-------------------~pLAVLky  291 (323)
T KOG0322|consen  233 SLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL-------------------NPLAVLKY  291 (323)
T ss_pred             eeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccC-------------------Cchhhhhh
Confidence            98765222111222222  2334555555  5689999999999999999984                   45566778


Q ss_pred             ccccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373          438 FECNLLSVDIGAD--RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       438 ~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~  466 (536)
                      |...|.+++|+++  .+|++|.|++|.+|++
T Consensus       292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  292 HSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            8888999998887  9999999999999986

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.68  E-value=2.8e-13  Score=118.45  Aligned_cols=228  Identities=18%  Similarity=0.263  Sum_probs=162.6

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC--ceEEEEecCCCEEE-EEeCC------CcEEEEEcccCc
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--CTIRAVAADKKLLV-AGGTD------GFIHCWRAVEVL  231 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~-sg~~d------g~i~vwd~~~~~  231 (536)
                      ..+++|+.|...++.|..+| .+||+.+.-+.....+.+.  ..+..+-...++|+ +|+.+      ..|.|||=..  
T Consensus         8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k--   84 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK--   84 (346)
T ss_pred             eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc--
Confidence            44589999999888888766 8999987644332222222  22223334444443 44433      5699999321  


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCC-CceEeEeee---ccccEEEEeec--CCEE
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA-LLKCLKVLR---HSDWVYGLAPH--DTTV  305 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~---~~~~v~~~~~~--~~~l  305 (536)
                                 ..++.++ ....+|.++.+..+.+++.- .+.|.+|... ..+.+..+.   .+....++.|.  ..+|
T Consensus        85 -----------~~~i~el-~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L  151 (346)
T KOG2111|consen   85 -----------ERCIIEL-SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL  151 (346)
T ss_pred             -----------CcEEEEE-EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence                       1233333 45789999999999888776 4789999987 566666665   34556677743  3344


Q ss_pred             EEec--CCcEEEEeCCCCcE--EEEEccccccceEEEEEeCCCCEEEEEcCCCc-EEEEEcccCccccccceeeeccC--
Q 009373          306 ASTS--GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIP--  378 (536)
Q Consensus       306 ~~~~--d~~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~--  378 (536)
                      +.-+  -|.|+|-|+...+.  ...+ .+|.+.|.|++.+.+|..+||+|..|+ |||||..++      ..+..+..  
T Consensus       152 afPg~k~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g------~~l~E~RRG~  224 (346)
T KOG2111|consen  152 AFPGFKTGQVQIVDLASTKPNAPSII-NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG------TLLQELRRGV  224 (346)
T ss_pred             EcCCCccceEEEEEhhhcCcCCceEE-EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC------cEeeeeecCC
Confidence            4444  48999999987665  3444 479999999999999999999999998 899999999      55555543  


Q ss_pred             CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccc
Q 009373          379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      ....|.+|+|+|  .+|+++|..|+|.|+.++...
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            356899999997  699999999999999998643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.67  E-value=4.4e-14  Score=125.81  Aligned_cols=228  Identities=17%  Similarity=0.243  Sum_probs=173.5

Q ss_pred             EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCC--eEEEEeCCCc
Q 009373          206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM--TVRVWDRALL  283 (536)
Q Consensus       206 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~i~iwd~~~~  283 (536)
                      +..+...|..|+.||. ++++.+.-.             .........-.|..+-|...+++..+.+.  .+++.+++.+
T Consensus        13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~-------------k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen   13 FNQDSTLLSVGSKDGY-KIFSCSPFE-------------KCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             eccceeEEEccCCCce-eEEecCchH-------------HhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC
Confidence            3455667888888874 466553321             11111222335666677888777766554  4999999999


Q ss_pred             eEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccc--cccceEEEEEeCCCCEEEEEc--CCCcEEEE
Q 009373          284 KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGA--HVGNTKSLARSHTGDFLFTGG--EDGAIHMY  359 (536)
Q Consensus       284 ~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~tg~--~dg~i~iw  359 (536)
                      ..+..+.....|.++..+.+.++++-...|+|||+++.+.+.++..-  +...+.++.+++.+.+++.-+  ..|.|.+|
T Consensus        79 ~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~  158 (391)
T KOG2110|consen   79 TTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF  158 (391)
T ss_pred             ceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence            99999999999999999999888888777999999999999888643  556677777777777888643  36889999


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCc-EEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  436 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (536)
                      |..+-      .++..+..|.+++.+++|++  .+|||+|..|+ |+|+.+.++++..++.-|.                
T Consensus       159 d~~nl------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~----------------  216 (391)
T KOG2110|consen  159 DTINL------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT----------------  216 (391)
T ss_pred             Ecccc------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc----------------
Confidence            99888      78888899999999999975  79999999997 7999998876554332221                


Q ss_pred             cccccEEEEEecCC--EEEEecCCCeEEEEeCCchh
Q 009373          437 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       437 ~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~  470 (536)
                       ....+.+++|+++  +|++.|..++|.+|.++...
T Consensus       217 -~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  217 -YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             -eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence             1355666776655  99999999999999998644

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.67  E-value=9e-15  Score=128.81  Aligned_cols=245  Identities=16%  Similarity=0.214  Sum_probs=180.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCce---eeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFS---IASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~-~~~~~---~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      ..+.++||.+.|+....-|...-+++.+.|.++|||-- +.++.   +....+....+.....+...|+.|-.+|++.-+
T Consensus        16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            35678999999999999999999999999999999954 44443   333445556666777888999999999999888


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCC
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDT  303 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  303 (536)
                      .+....         +..........|...|..+-|  ....+++.+.|..+.---.+.+..+..+.......++..+-.
T Consensus        96 s~sedf---------nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~  166 (404)
T KOG1409|consen   96 ALSEDF---------NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL  166 (404)
T ss_pred             Ehhhhh---------hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE
Confidence            765432         223345556789999999999  668899999998876555555554443332222222221111


Q ss_pred             EEEEec-CCcEEEEe--CCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC
Q 009373          304 TVASTS-GSDVYIWD--TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      +...|. .|.|..-.  ...-.++.++. +|.+.+++++|.|....|++|..|..+.+||+....     .....+.+|.
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-----g~~~el~gh~  240 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-----GTAYELQGHN  240 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-----ceeeeeccch
Confidence            334444 45554433  33445666664 799999999999999999999999999999997663     3566778999


Q ss_pred             CCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      ..|..+..-+  ..+++++.||.|.+||++.
T Consensus       241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            9999998854  7999999999999999864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2.7e-15  Score=140.45  Aligned_cols=214  Identities=18%  Similarity=0.268  Sum_probs=152.3

Q ss_pred             ccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----------ceeeeeCCCCceEEEE--ecCCCEEEE
Q 009373          148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRAV--AADKKLLVA  215 (536)
Q Consensus       148 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----------~~~~~~~~~~~~v~~~--~~~~~~l~s  215 (536)
                      ..++.+|++|.++|.|+++.+++..+++|+-||+|+.|++...          .....+.+|...++.+  +.....|++
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls  413 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS  413 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence            3578999999999999999999999999999999999976522          2234567888888554  467778999


Q ss_pred             EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCC---EEEEEecCCeEEEEeCCCceEeEeeec-
Q 009373          216 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLT---RIYSGSWDMTVRVWDRALLKCLKVLRH-  291 (536)
Q Consensus       216 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~iwd~~~~~~~~~~~~-  291 (536)
                      ++.||+++.|+.....+.            .+....-.+.-.++.+...   ..++...-+.--++++.....+..+.. 
T Consensus       414 cs~DgTvr~w~~~~~~~~------------~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~  481 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESPC------------TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS  481 (577)
T ss_pred             ecCCceEEeeccCCcCcc------------ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc
Confidence            999999999998655321            1111122234455666332   223332333333444444444444431 


Q ss_pred             -------cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          292 -------SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       292 -------~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                             ...+.-+.  +...+.+++. +..|+++|..+++.+.... .|...++++++.|+|.+|++|+.||.+++|.+
T Consensus       482 ~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  482 ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             CCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-eccceecceeecCCCceEEeecCCceeehhhc
Confidence                   12233333  6666777777 8999999999999998875 69999999999999999999999999999998


Q ss_pred             ccCccccccceeeeccCCC
Q 009373          362 INDCTEANVLLVATWIPHT  380 (536)
Q Consensus       362 ~~~~~~~~~~~~~~~~~h~  380 (536)
                      ...      .++.....|.
T Consensus       561 d~k------~~~~es~~~r  573 (577)
T KOG0642|consen  561 DVK------TCVLESTAHR  573 (577)
T ss_pred             cch------heeecccccc
Confidence            776      4555555553

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=8.5e-14  Score=121.65  Aligned_cols=232  Identities=14%  Similarity=0.092  Sum_probs=175.0

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ..+.--..+|+|.+|++|...+|.+-....|.||.....+   ...++..|...+..+.  |..+.|++++.|..-++|.
T Consensus         4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            3444456899999999999999999999999999987654   5677888888776655  8899999999999999998


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe-----eeccccEEEEe
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-----LRHSDWVYGLA  299 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~  299 (536)
                      ...+          ...++...+..++...+++.|  ..+.|++||.-+.|.||-++....-..     ..+...|.+++
T Consensus        84 ~~~~----------~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld  153 (361)
T KOG1523|consen   84 QPSG----------GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD  153 (361)
T ss_pred             cCCC----------CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence            7433          336677788899999999999  678999999999999998765443321     12667889998


Q ss_pred             --ecCCEEEEec-CCcEEEEeCC-----C-------------CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          300 --PHDTTVASTS-GSDVYIWDTN-----S-------------GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       300 --~~~~~l~~~~-d~~i~i~d~~-----~-------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                        |++-++++|+ |+.+++|..-     .             |+++..+. ...+.+..+.|+|+|..|+-.+.|+.+.+
T Consensus       154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~  232 (361)
T KOG1523|consen  154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSF  232 (361)
T ss_pred             ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEE
Confidence              7788888888 9999998542     1             12223332 35678999999999999999999999999


Q ss_pred             EEcccCccccccceeeeccCCCCCeEEEEE-cCCeEEEEeCC
Q 009373          359 YEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGD  399 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d  399 (536)
                      =|...+.+     .+.......-+..++.| +.+.++.++.|
T Consensus       233 ~da~~p~~-----~v~~~~~~~lP~ls~~~ise~~vv~ag~~  269 (361)
T KOG1523|consen  233 VDAAGPSE-----RVQSVATAQLPLLSVSWISENSVVAAGYD  269 (361)
T ss_pred             eecCCCch-----hccchhhccCCceeeEeecCCceeecCCC
Confidence            99876631     22222223356677777 34445555544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.63  E-value=1.3e-14  Score=138.27  Aligned_cols=232  Identities=13%  Similarity=0.176  Sum_probs=170.4

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ..+++++||.+.|+|++|+.||..+|+|+.|..|.+|+-+-...++.  .|+..|.|++  |-...|++++.+ ..-+|.
T Consensus        44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY--SH~D~IQCMsFNP~~h~LasCsLs-dFglWS  120 (1081)
T KOG1538|consen   44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY--SHNDAIQCMSFNPITHQLASCSLS-DFGLWS  120 (1081)
T ss_pred             ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee--ccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence            35789999999999999999999999999999999999764444443  4566666655  667788888765 456787


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe-
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA-  299 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~-  299 (536)
                      .+...              +. -......|.+.+|  ||.+++.|-.||+|.+-+-. ++....+.    ...+|.+++ 
T Consensus       121 ~~qK~--------------V~-K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~  184 (1081)
T KOG1538|consen  121 PEQKS--------------VS-KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICW  184 (1081)
T ss_pred             hhhhh--------------HH-hhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEe
Confidence            64321              11 1122456777888  88999999999999998653 44433333    567888887 


Q ss_pred             -ec-----CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373          300 -PH-----DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       300 -~~-----~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                       |.     ...+++.. +.++.+|.+. |+.+..-. ...-...|+.+.++|.+++.|+.|+.+++|- +.+      ..
T Consensus       185 ~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G------vr  255 (1081)
T KOG1538|consen  185 NPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG------VR  255 (1081)
T ss_pred             cCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhheeccCCcEEEEccCCCceEEEe-ecC------eE
Confidence             22     23455555 6677777764 33333221 2344567899999999999999999999996 444      46


Q ss_pred             eeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          373 VATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       373 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      +.++......|++++..|  .+++.|+.||+|..|++-
T Consensus       256 LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  256 LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            677767788999999987  699999999999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.62  E-value=9.1e-13  Score=126.60  Aligned_cols=267  Identities=10%  Similarity=0.108  Sum_probs=160.2

Q ss_pred             EEEEeCCCcEEEEECCC-Cc--eeeeeCC-CCceEEEEecCCCEEEEEe-CCCcEEEEEccc-CccceecccCcccccce
Q 009373          173 LFTSGYDSIVRMWHLED-GF--SIASSKP-LGCTIRAVAADKKLLVAGG-TDGFIHCWRAVE-VLPHLFDISGSEKQNTQ  246 (536)
Q Consensus       173 l~sgs~dg~v~iwd~~~-~~--~~~~~~~-~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~  246 (536)
                      +++...|+.|++|++.+ ++  .+..+.. .....++++|++++|++++ .++.|.+|++.. +.           ....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-----------l~~~   73 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-----------LTFA   73 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-----------eEEe
Confidence            44457799999999964 33  4444432 2234467789999887764 578899999862 21           1111


Q ss_pred             EEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCc----eEeEeeeccccEE--EEeecCCEEEEec--CCcEEE
Q 009373          247 FRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALL----KCLKVLRHSDWVY--GLAPHDTTVASTS--GSDVYI  315 (536)
Q Consensus       247 ~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~----~~~~~~~~~~~v~--~~~~~~~~l~~~~--d~~i~i  315 (536)
                      ... ...+....+++  +++++++++ .++.|.+|++.+.    +....+.......  .+.|++++++++.  ++.|.+
T Consensus        74 ~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v  152 (330)
T PRK11028         74 AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRL  152 (330)
T ss_pred             eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEE
Confidence            111 12234567777  567777766 4889999998642    2222222222223  3558888886665  689999


Q ss_pred             EeCCCCcEEEE-----EccccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccccceeeeccC------CCCCe
Q 009373          316 WDTNSGCLLTV-----VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIP------HTGPV  383 (536)
Q Consensus       316 ~d~~~~~~~~~-----~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v  383 (536)
                      ||+.+...+..     ...........+.|+|+|++++++.. ++.|.+|++.....  ....+..+..      +....
T Consensus       153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~  230 (330)
T PRK11028        153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWA  230 (330)
T ss_pred             EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccc
Confidence            99987432211     11112345678999999999988876 89999999974211  1122222211      11223


Q ss_pred             EEEEEcC--CeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEec-CCC
Q 009373          384 NSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGG-EEG  459 (536)
Q Consensus       384 ~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~-~Dg  459 (536)
                      ..+.++|  ++++++.. ++.|.+|++........     ...         ....+....-+.+++++++|+++. .++
T Consensus       231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~-----~~~---------~~~~~~~p~~~~~~~dg~~l~va~~~~~  296 (330)
T PRK11028        231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS-----FEG---------HQPTETQPRGFNIDHSGKYLIAAGQKSH  296 (330)
T ss_pred             eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE-----EeE---------EEeccccCCceEECCCCCEEEEEEccCC
Confidence            4577876  57887754 78999999865211100     000         000111222346677788776555 599


Q ss_pred             eEEEEeCC
Q 009373          460 IVRIWNFS  467 (536)
Q Consensus       460 ~i~vW~~~  467 (536)
                      +|.+|+++
T Consensus       297 ~v~v~~~~  304 (330)
T PRK11028        297 HISVYEID  304 (330)
T ss_pred             cEEEEEEc
Confidence            99999885

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.61  E-value=3.2e-14  Score=128.06  Aligned_cols=230  Identities=22%  Similarity=0.217  Sum_probs=158.7

Q ss_pred             CCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC--------C-
Q 009373          119 APLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--------D-  189 (536)
Q Consensus       119 ~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~--------~-  189 (536)
                      ..+..++.+.++|+....+-.-..   ..-.-...|..|...|+++.|+|+|.+||||+.+|.|.+|...        + 
T Consensus        29 laT~G~D~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e  105 (434)
T KOG1009|consen   29 LATAGGDKDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE  105 (434)
T ss_pred             eecccCccceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence            455566777888986543311100   0112356788999999999999999999999999999999865        2 


Q ss_pred             -------CceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE
Q 009373          190 -------GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA  260 (536)
Q Consensus       190 -------~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  260 (536)
                             ....+.+.+|...++.++  +++.++++|+.|.++++||+..|.             ....+.+|...|..++
T Consensus       106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-------------l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen  106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-------------LLAILDDHEHYVQGVA  172 (434)
T ss_pred             hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-------------eEeeccccccccceee
Confidence                   123455677888887655  999999999999999999998764             4445556666777766


Q ss_pred             EeC--CEEEEEecCCeEEEEeCCCceEeE---------------------------------------------------
Q 009373          261 LDL--TRIYSGSWDMTVRVWDRALLKCLK---------------------------------------------------  287 (536)
Q Consensus       261 ~~~--~~l~s~s~dg~i~iwd~~~~~~~~---------------------------------------------------  287 (536)
                      ||+  .++++-+.|...+.+.+...+.+.                                                   
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~  252 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF  252 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence            633  445555554433333221110000                                                   


Q ss_pred             ------------------------eee-ccccEEEEe--------------------ecCCEEEEecCCcEEEEeCCCCc
Q 009373          288 ------------------------VLR-HSDWVYGLA--------------------PHDTTVASTSGSDVYIWDTNSGC  322 (536)
Q Consensus       288 ------------------------~~~-~~~~v~~~~--------------------~~~~~l~~~~d~~i~i~d~~~~~  322 (536)
                                              .+. ...++..+.                    |.+-.++.++.+.|.+||.++-.
T Consensus       253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~  332 (434)
T KOG1009|consen  253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLE  332 (434)
T ss_pred             eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecccccc
Confidence                                    000 000000000                    22335666778899999999999


Q ss_pred             EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      ++....+-|-..|+.++|+++|..|+..+.||.+.+-.+...
T Consensus       333 P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~  374 (434)
T KOG1009|consen  333 PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW  374 (434)
T ss_pred             ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence            888887789999999999999999999999999888877665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=3.8e-14  Score=128.48  Aligned_cols=191  Identities=21%  Similarity=0.220  Sum_probs=140.5

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccC
Q 009373          162 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       162 ~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      .+++|+++|..|++|+.||++|||+..+...+.....|...|-++  +||++.|++-+.| ..+||+.+++..... ...
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~-~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR-KTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh-cCC
Confidence            688999999999999999999999998888888888888877655  5999999999999 999999988732110 000


Q ss_pred             cccccceEEeeCCccCEEEEEE--eC---CE-E-EEEecCCeEEEEeCCCceE------eEeeeccccEEEEe--ecCCE
Q 009373          240 SEKQNTQFRLWEHEGPITSLAL--DL---TR-I-YSGSWDMTVRVWDRALLKC------LKVLRHSDWVYGLA--PHDTT  304 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~--~~---~~-l-~s~s~dg~i~iwd~~~~~~------~~~~~~~~~v~~~~--~~~~~  304 (536)
                                .+-.-....+.|  ++   .+ + +....-+.|+.||+....-      .+.+.....|.+++  .+|++
T Consensus       226 ----------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf  295 (398)
T KOG0771|consen  226 ----------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF  295 (398)
T ss_pred             ----------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence                      011112233334  22   11 2 2223334566655432221      11112334566655  99999


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      ++.|+ +|.|.+++..+.+.+..++..|..-|+.+.|+|+.+++++-+.|....+..+.-.
T Consensus       296 ~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  296 LALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             EEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence            99999 9999999999999999999999999999999999999999999999998887653

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.58  E-value=5.5e-14  Score=133.23  Aligned_cols=236  Identities=17%  Similarity=0.170  Sum_probs=155.5

Q ss_pred             EecCCCEEEE--EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeC
Q 009373          206 VAADKKLLVA--GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       206 ~~~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~  280 (536)
                      ++.+...+++  .+..|.|-||++......         ..-...-.-....|+++.|   |...|+.++.||.|++|.+
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrL---------PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~  657 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRL---------PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL  657 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCC---------CcccccccccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence            3344444444  456789999998654210         0011111123467999999   6689999999999999998


Q ss_pred             CCce-------EeEeee-ccccEEEEeec---CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373          281 ALLK-------CLKVLR-HSDWVYGLAPH---DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       281 ~~~~-------~~~~~~-~~~~v~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      ..+.       ....+. |...|+++..+   ...|++++ |.+|++||+++++....+. +|.+.|..++|+|+|+.++
T Consensus       658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpdGr~~A  736 (1012)
T KOG1445|consen  658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPDGRRIA  736 (1012)
T ss_pred             ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCCCccee
Confidence            6542       333444 88889998843   45666666 9999999999999888885 7999999999999999999


Q ss_pred             EEcCCCcEEEEEcccCccccccceeeeccCCC-CCeEEEEE--cCCeEEEEeCC----CcEEEEECCcccccCCCCCCCc
Q 009373          349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAF--EFPWLVSAAGD----GKLSLIDVRKLLRSGRPTSGKR  421 (536)
Q Consensus       349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~s~s~d----g~i~vwd~~~~~~~~~~~~~~~  421 (536)
                      +.+.||+|++|+.+...     .+++.-.+.. ..-..|.|  ++.++++.+.|    ..|.+||..+....       .
T Consensus       737 tVcKDg~~rVy~Prs~e-----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~-------p  804 (1012)
T KOG1445|consen  737 TVCKDGTLRVYEPRSRE-----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLR-------P  804 (1012)
T ss_pred             eeecCceEEEeCCCCCC-----CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCC-------c
Confidence            99999999999998874     2333322211 11223334  56777777765    46788887663200       0


Q ss_pred             eeeEEeeCCCeeeecc-ccccEEEEEecCC-EEEEecCCCeEEEEeCCchhh
Q 009373          422 VSRVIEVEPPQRMLHG-FECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       422 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                      +.        ...+.- -..-+-..+++.. .++||-.|..|.+|++-....
T Consensus       805 l~--------t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  805 LY--------TQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             ce--------eeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence            00        000000 0011222233333 789999999999999876544

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=3e-13  Score=126.09  Aligned_cols=213  Identities=16%  Similarity=0.195  Sum_probs=148.0

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee------eeeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEcc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI------ASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~------~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      .++...++-.|++|+-.- ...+.+|+...+..+      ..+.+....+.++.     +.+--++.|-.-|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            344444554566655432 245788887643221      12233334444442     667788999999999998864


Q ss_pred             cCccc-eecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCC--------------ceEeEeee
Q 009373          229 EVLPH-LFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRAL--------------LKCLKVLR  290 (536)
Q Consensus       229 ~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~--------------~~~~~~~~  290 (536)
                      ..... ++.        .  ...-....|+++.|   +...++.+-.+|.+++||..-              +.......
T Consensus       204 ~~~~sklfn--------e--~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t  273 (636)
T KOG2394|consen  204 NFEVSKLFN--------E--ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT  273 (636)
T ss_pred             hhHHHHhhh--------h--cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee
Confidence            42100 000        0  00012378999999   567888889999999997531              11111111


Q ss_pred             ---------------ccccEEE--EeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC
Q 009373          291 ---------------HSDWVYG--LAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE  352 (536)
Q Consensus       291 ---------------~~~~v~~--~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~  352 (536)
                                     ..+.|..  ++++|++|++.+ ||.++|||..+.+.+..++ ..-+...|++|+|||++|++|++
T Consensus       274 ~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGKyIvtGGE  352 (636)
T KOG2394|consen  274 SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGKYIVTGGE  352 (636)
T ss_pred             eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCccEEEecCC
Confidence                           1223333  348999999999 9999999999988887775 36778999999999999999999


Q ss_pred             CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373          353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                      |..|.||.+...      +.+..-.+|.+.|+.++|+|
T Consensus       353 DDLVtVwSf~er------RVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  353 DDLVTVWSFEER------RVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cceEEEEEeccc------eEEEeccccccceeeEeecc
Confidence            999999999988      78888899999999999998

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=2.7e-13  Score=134.38  Aligned_cols=225  Identities=16%  Similarity=0.121  Sum_probs=155.5

Q ss_pred             ccCCccceeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCce--eeeeCCCCceEEEEecCCCEEEEEe-
Q 009373          144 TFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFS--IASSKPLGCTIRAVAADKKLLVAGG-  217 (536)
Q Consensus       144 ~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~-  217 (536)
                      ...|.. .+.+..|...|.+.+|+|+|+.|+.++.+   ..|++||+.+++.  +..+.++.. ..+++|||+.|+.++ 
T Consensus       190 d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~  267 (429)
T PRK01742        190 DYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASS  267 (429)
T ss_pred             CCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEe
Confidence            344443 46678889999999999999999987754   3699999988753  444444433 357889999888764 


Q ss_pred             CCCcEEEEE--cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCc-eEeEeeec
Q 009373          218 TDGFIHCWR--AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALL-KCLKVLRH  291 (536)
Q Consensus       218 ~dg~i~vwd--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~  291 (536)
                      .+|.+.+|.  +.++              ....+..+...+.+..|  +++.|+.++ .+|...||++... .....+.+
T Consensus       268 ~~g~~~Iy~~d~~~~--------------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~  333 (429)
T PRK01742        268 KDGVLNIYVMGANGG--------------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG  333 (429)
T ss_pred             cCCcEEEEEEECCCC--------------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC
Confidence            688766664  4333              23345566667778888  777666554 5788888876432 22222333


Q ss_pred             cccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373          292 SDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       292 ~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                      ......++|+++.++..+...+.+||+.+++...... .+  ....+.|+|+|++|+.++.+|.+.+|++.+...    .
T Consensus       334 ~~~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G----~  406 (429)
T PRK01742        334 RGYSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG----R  406 (429)
T ss_pred             CCCCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC----C
Confidence            3222345699999988876667779999887653322 22  235678999999999999999999888743210    4


Q ss_pred             eeeeccCCCCCeEEEEEcCC
Q 009373          372 LVATWIPHTGPVNSLAFEFP  391 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~~~  391 (536)
                      ....+..|.+.+...+|+|.
T Consensus       407 ~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        407 FKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ceEEccCCCCCCCCcccCCC
Confidence            56667788888888999873

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.57  E-value=3.1e-15  Score=145.85  Aligned_cols=260  Identities=19%  Similarity=0.226  Sum_probs=190.6

Q ss_pred             ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEE
Q 009373          191 FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI  266 (536)
Q Consensus       191 ~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l  266 (536)
                      +.++.+.+|...|+|..  ..|.++++|+.|..++||..+++.             +.....||.+.|+.++.  +.-++
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------------~lAs~rGhs~ditdlavs~~n~~i  247 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------------CLASCRGHSGDITDLAVSSNNTMI  247 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------------hhccCCCCccccchhccchhhhhh
Confidence            34556688998888876  568899999999999999987753             67788999999999999  55678


Q ss_pred             EEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEE----ccccccceEEEEEe
Q 009373          267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVV----NGAHVGNTKSLARS  341 (536)
Q Consensus       267 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~i~~l~~~  341 (536)
                      +++|.|..|++|.+.++.++..+. |.+.|++++..... .++.||++++||.+- .+....    ......-+-++.|.
T Consensus       248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~  325 (1113)
T KOG0644|consen  248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFE  325 (1113)
T ss_pred             hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-cCCCCCceEeccccc-cccccCCCCCCcccccceeeeecc
Confidence            999999999999999999999887 99999999844443 334489999999982 111111    11123456677788


Q ss_pred             CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc---CCeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373          342 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTS  418 (536)
Q Consensus       342 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  418 (536)
                      ..+..++||+.|+.-..|.+....            .+...+.-+.++   ..+.+++-.+-.+++|++.++.       
T Consensus       326 ~~~~~f~Tgs~d~ea~n~e~~~l~------------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~-------  386 (1113)
T KOG0644|consen  326 NNGDRFLTGSRDGEARNHEFEQLA------------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ-------  386 (1113)
T ss_pred             ccccccccccCCcccccchhhHhh------------hhccceEEEeccccccccceeeeeeeEeeeeecccch-------
Confidence            888999999999999888764431            122222222222   2567777778899999998752       


Q ss_pred             CCceeeEEeeCCCeeeeccccccEEEEEecC---CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc
Q 009373          419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT  495 (536)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (536)
                                  ....+.+|...+..+.+++   ....+++.||...|||+-.|..++.....          +-....-
T Consensus       387 ------------l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g----------h~kl~d~  444 (1113)
T KOG0644|consen  387 ------------LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG----------HGKLVDG  444 (1113)
T ss_pred             ------------hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc----------cceeecc
Confidence                        2233456666666666444   47789999999999999998877654421          3345667


Q ss_pred             ccccCCCCcce
Q 009373          496 EMSSKGGRTDQ  506 (536)
Q Consensus       496 ~~~~~g~~~~~  506 (536)
                      +||+||..++.
T Consensus       445 kFSqdgts~~l  455 (1113)
T KOG0644|consen  445 KFSQDGTSIAL  455 (1113)
T ss_pred             ccCCCCceEec
Confidence            89999988875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=5.1e-14  Score=127.69  Aligned_cols=189  Identities=24%  Similarity=0.294  Sum_probs=140.0

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373          201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iw  278 (536)
                      ..++++..+|..+++|+.||++++|++...             ........|.+.|.++.|  |++.|++.+.| ..+||
T Consensus       147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~-------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW  212 (398)
T KOG0771|consen  147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSM-------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW  212 (398)
T ss_pred             ceEEEEcCCCCEeeeccccceEEEEecCcc-------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence            367788899999999999999999997543             345556789999999999  88899999999 99999


Q ss_pred             eCCCceEeEeee--ccccEEE---EeecC---CEE-EEec--CCcEEEEeCCCCcE-----EEEEccccccceEEEEEeC
Q 009373          279 DRALLKCLKVLR--HSDWVYG---LAPHD---TTV-ASTS--GSDVYIWDTNSGCL-----LTVVNGAHVGNTKSLARSH  342 (536)
Q Consensus       279 d~~~~~~~~~~~--~~~~v~~---~~~~~---~~l-~~~~--d~~i~i~d~~~~~~-----~~~~~~~~~~~i~~l~~~~  342 (536)
                      +.+++..+....  ..++..+   +..++   .+. ++..  .+.|+.||+....-     .+... .....|++++.++
T Consensus       213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~  291 (398)
T KOG0771|consen  213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD  291 (398)
T ss_pred             EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC
Confidence            999997666655  2222221   11222   222 3322  36677776644321     11111 2345799999999


Q ss_pred             CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          343 TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       343 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      +|++++.|+.||.|-|++..+.+     .....-..|...|+.+.|+|  +++++.+.|..+.|..+.-
T Consensus       292 dGkf~AlGT~dGsVai~~~~~lq-----~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  292 DGKFLALGTMDGSVAIYDAKSLQ-----RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEeccCCcEEEEEeceee-----eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99999999999999999988773     23344568999999999998  6899999998888887754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=3.8e-14  Score=132.19  Aligned_cols=229  Identities=20%  Similarity=0.252  Sum_probs=155.0

Q ss_pred             ceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe----ecCCEEEEec-CCcEEE
Q 009373          245 TQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTS-GSDVYI  315 (536)
Q Consensus       245 ~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~-d~~i~i  315 (536)
                      ....+.||++-|.++.|  +|.+|++||.|-.+.|||.-..+.+..+.  |...|.++.    .+++.+++|. |..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            44568899999999999  88999999999999999999888888887  899999987    3566777777 899999


Q ss_pred             EeCCCC----------cEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccccc----ceeeeccCCC
Q 009373          316 WDTNSG----------CLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANV----LLVATWIPHT  380 (536)
Q Consensus       316 ~d~~~~----------~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~----~~~~~~~~h~  380 (536)
                      ||+...          +....+ ..|...|..++..|++ ..+.++++||+|+-||++....-..-    ..+..+.+.-
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999852          222333 3588899999999988 78999999999999999885321110    1111111222


Q ss_pred             CCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCC---------CceeeEEeeCCCeeeecc----ccccEEE
Q 009373          381 GPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSG---------KRVSRVIEVEPPQRMLHG----FECNLLS  444 (536)
Q Consensus       381 ~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~v~~  444 (536)
                      -...++..+|   .+|++|+.|-..++||.+...+.......         .++.-+. ... .+...+    ....++.
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~h-lkn~~gn~~~~~~~~t~  278 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGH-LKNSQGNLDRYITCCTY  278 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-Ccc-ccCcccccccceeeeEE
Confidence            3456777775   79999999999999997654333221110         0010000 000 001111    0111334


Q ss_pred             EEecCC---EEEEecCCCeEEEEeCCchhhHHHHHH
Q 009373          445 VDIGAD---RIVCGGEEGIVRIWNFSQAFEIERRAR  477 (536)
Q Consensus       445 ~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~~~~~  477 (536)
                      +.|+++   .|++-+.+ .|+++|+..++.+.....
T Consensus       279 vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~~~y~~  313 (758)
T KOG1310|consen  279 VTFNPNGTELLVSWGGE-HVYLFDVNEDKSPTPYFL  313 (758)
T ss_pred             EEECCCCcEEEEeeCCe-EEEEEeecCCCCceeecC
Confidence            445554   77777765 699999998876655443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.55  E-value=1.8e-14  Score=131.67  Aligned_cols=224  Identities=16%  Similarity=0.233  Sum_probs=171.6

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEe
Q 009373          201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd  279 (536)
                      ..-...+.+|..++.|+.-|.|..+|+.++.             ....+ .-...|.++.| ....+++......+.|||
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~-------------L~~Ei-~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD  197 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK-------------LHFEI-NVMETVRDVTFLHNEQFFAVAQKKYVYVYD  197 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccce-------------eeeee-ehhhhhhhhhhhcchHHHHhhhhceEEEec
Confidence            3345566788899999999999999987753             11122 23456888888 555566666778999999


Q ss_pred             CCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373          280 RALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  356 (536)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i  356 (536)
                      - .|..++.+.....|..+.  |.--+|++++ .|-++.-|+.+|+.+..+.. ..+.+..++-+|-...+-+|...|+|
T Consensus       198 ~-~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtV  275 (545)
T KOG1272|consen  198 N-NGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTV  275 (545)
T ss_pred             C-CCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceE
Confidence            5 466777777667777776  7777778877 68999999999999988864 66788889999999999999999999


Q ss_pred             EEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee
Q 009373          357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  434 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (536)
                      .+|.....      .++..+..|.++|.+|++++  .|++|++.|..++|||+++..++...                  
T Consensus       276 SlWSP~sk------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~------------------  331 (545)
T KOG1272|consen  276 SLWSPNSK------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY------------------  331 (545)
T ss_pred             EecCCCCc------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee------------------
Confidence            99998887      67777889999999999975  89999999999999999986433211                  


Q ss_pred             eccccccEEEEEecCCEEEEecCCCeEEEEeC
Q 009373          435 LHGFECNLLSVDIGADRIVCGGEEGIVRIWNF  466 (536)
Q Consensus       435 ~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~  466 (536)
                      ...  .....++++..-+++.|....|.||.=
T Consensus       332 ~tp--~~a~~ls~SqkglLA~~~G~~v~iw~d  361 (545)
T KOG1272|consen  332 RTP--HPASNLSLSQKGLLALSYGDHVQIWKD  361 (545)
T ss_pred             ecC--CCccccccccccceeeecCCeeeeehh
Confidence            111  223355566665566666667999963

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=6.7e-13  Score=119.20  Aligned_cols=240  Identities=14%  Similarity=0.171  Sum_probs=176.3

Q ss_pred             eeCccccEEEEEEecCCC--EEEEEeCCCcEEEEECCCCceeee------eCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373          154 LYGHTEAVLTVFVLASAK--LLFTSGYDSIVRMWHLEDGFSIAS------SKPLGCTIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~~--~l~sgs~dg~v~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      ..+-...|..++|.-++.  .+...+.|..+..+..+.......      ......+|..+......|++|-.+|.+.+|
T Consensus        51 ~~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~  130 (412)
T KOG3881|consen   51 GVDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVR  130 (412)
T ss_pred             ccchhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEE
Confidence            334566788888876554  566666777888888776654433      344556777777777789999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecC--CeEEEEeCCCceEeEeee----------
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWD--MTVRVWDRALLKCLKVLR----------  290 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~----------  290 (536)
                      ....+...         ......+..+ ..+..+.-   ++..+++|+..  ..+++||+++.+.+..-.          
T Consensus       131 ~~k~~d~h---------ss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~Lr  200 (412)
T KOG3881|consen  131 HDKSGDLH---------SSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLR  200 (412)
T ss_pred             eccCCccc---------cccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccce
Confidence            98755311         1122222222 33333333   45678889998  899999999886555432          


Q ss_pred             ccccEEEEe--ec--CCEEEEec-CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          291 HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       291 ~~~~v~~~~--~~--~~~l~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      -+-+++++.  +.  ...|++++ -+.+++||.+.++ ++..+. -...+++++...|+++++++|..-|.+..||++.+
T Consensus       201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~  279 (412)
T KOG3881|consen  201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG  279 (412)
T ss_pred             eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence            223444444  33  56777777 7999999999874 566664 46789999999999999999999999999999998


Q ss_pred             ccccccceee-eccCCCCCeEEEEEcCC--eEEEEeCCCcEEEEECCcc
Q 009373          365 CTEANVLLVA-TWIPHTGPVNSLAFEFP--WLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       365 ~~~~~~~~~~-~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~  410 (536)
                            .... .+.+-.+.|++|..+|.  +|+++|-|..|+|+|+.+.
T Consensus       280 ------kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  280 ------KLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ------eeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence                  4443 48889999999999985  9999999999999999984

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.54  E-value=1.6e-14  Score=132.06  Aligned_cols=223  Identities=14%  Similarity=0.161  Sum_probs=169.7

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      -+-+.+.++.+|++|+.|+.-|.|-.+|..++.....+... ..|.++.  .+.++++ ......++|||-..       
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~A-VAQK~y~yvYD~~G-------  200 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFA-VAQKKYVYVYDNNG-------  200 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHH-hhhhceEEEecCCC-------
Confidence            34567889999999999999999999999999877665432 2333333  3334444 44556788888432       


Q ss_pred             ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-C
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G  310 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d  310 (536)
                             ..+..+..| ..|..+.|  ..-+|++++..|.++--|+.+|+.+..+. ..+.+..+.  |.+-.+-.|. +
T Consensus       201 -------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghsn  272 (545)
T KOG1272|consen  201 -------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSN  272 (545)
T ss_pred             -------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCC
Confidence                   244445444 45778888  33467888999999999999999998887 445555554  7777777777 8


Q ss_pred             CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373          311 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       311 ~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                      |+|.+|.....+++..+. .|.++|.++++.++|.+++|.+.|..++|||++.-      ..+.++.. .-+...+++|.
T Consensus       273 GtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~------~ql~t~~t-p~~a~~ls~Sq  344 (545)
T KOG1272|consen  273 GTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF------YQLHTYRT-PHPASNLSLSQ  344 (545)
T ss_pred             ceEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccc------cccceeec-CCCcccccccc
Confidence            999999999999988886 59999999999999999999999999999999987      33333333 34667888888


Q ss_pred             CeEEEEeCCCcEEEEE
Q 009373          391 PWLVSAAGDGKLSLID  406 (536)
Q Consensus       391 ~~l~s~s~dg~i~vwd  406 (536)
                      .-+++.|....|.+|.
T Consensus       345 kglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  345 KGLLALSYGDHVQIWK  360 (545)
T ss_pred             ccceeeecCCeeeeeh
Confidence            7777777777899995

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=6.6e-13  Score=118.98  Aligned_cols=318  Identities=15%  Similarity=0.104  Sum_probs=202.5

Q ss_pred             HHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCC------CCCCCCCCC--CCCCchhhhhhhhhhccc
Q 009373           73 SEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIA------SAPLGAGFS--DDKSWKELFVEREFRSKT  144 (536)
Q Consensus        73 ~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~------~~~~~~~~~--~~~~Wk~~~~~~~~~~~~  144 (536)
                      ++|-+||..+.|.....|-+.|+.-...--+.++=...++|.-..      ...+++|..  ....|...-...   .  
T Consensus        17 ~~i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---~--   91 (609)
T KOG4227|consen   17 FKIESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---R--   91 (609)
T ss_pred             ceeeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh---h--
Confidence            456677777777777777777764432222222222233442221      222333322  245564321110   0  


Q ss_pred             cCCccceeeee-CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC--CCceEEEEe--cCCCEEEEEeCC
Q 009373          145 FLGRYSIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVA--ADKKLLVAGGTD  219 (536)
Q Consensus       145 ~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~--~~~~~l~sg~~d  219 (536)
                       +...+++... .|...|.|++|....+.|++|..+++|...|+++.+.+..+..  ..+.|+.+.  |..+.|++.+.+
T Consensus        92 -k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~  170 (609)
T KOG4227|consen   92 -KTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA  170 (609)
T ss_pred             -cCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence             1112344443 4668999999999999999999999999999999988876643  334676665  888999999999


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEe-Ee------e
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCL-KV------L  289 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~-~~------~  289 (536)
                      |.|.+||.+...          .......+........++.|   .+.+|++.+..+-+-+||.+..... ..      +
T Consensus       171 ~~V~~~D~Rd~~----------~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L  240 (609)
T KOG4227|consen  171 KLVSFIDNRDRQ----------NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL  240 (609)
T ss_pred             ceEEEEeccCCC----------CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence            999999987642          11122333334455667777   4578999999999999998754321 11      1


Q ss_pred             ec--cccEEE-EeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccc-------cceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          290 RH--SDWVYG-LAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-------GNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       290 ~~--~~~v~~-~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                      ..  ..+... +.++|+.+.+-- ...-.+||+.+.++...-. .|.       ..+.+++|.-+.. +++|+.+-.|++
T Consensus       241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~  318 (609)
T KOG4227|consen  241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHI  318 (609)
T ss_pred             cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee-eeccCcccceEE
Confidence            11  111222 237788777766 4445678887755432221 222       2466777875544 999999999999


Q ss_pred             EEcccCccccc-----------------cceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          359 YEIINDCTEAN-----------------VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       359 wd~~~~~~~~~-----------------~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      |.+........                 -..+..+.+|.+.++.+.|++  .+|++.+-...+++|.-.
T Consensus       319 WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  319 WKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             EecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence            99854322111                 123566889999999999987  677888889999999754

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.5e-12  Score=122.51  Aligned_cols=260  Identities=16%  Similarity=0.197  Sum_probs=176.5

Q ss_pred             eEEEEecCCCE-EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCc-cCEEEEEE---eCCEEEEEecCCeEE
Q 009373          202 TIRAVAADKKL-LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLAL---DLTRIYSGSWDMTVR  276 (536)
Q Consensus       202 ~v~~~~~~~~~-l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~---~~~~l~s~s~dg~i~  276 (536)
                      .-..++|||++ +++|..--.|++||+..               ....+..|. +.+..+..   |-..++.--.|++|-
T Consensus        55 t~ik~s~DGqY~lAtG~YKP~ikvydlan---------------LSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   55 TRIKVSPDGQYLLATGTYKPQIKVYDLAN---------------LSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIE  119 (703)
T ss_pred             ceeEecCCCcEEEEecccCCceEEEEccc---------------ceeeeeecccccceeEEEeccchhhheEeecCceee
Confidence            34456799986 56677788999999854               333444453 34444444   334566666777777


Q ss_pred             EEeCCCceEeEeeeccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373          277 VWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  355 (536)
Q Consensus       277 iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~  355 (536)
                      +...-.......+...+.=.+.. ++-.++++|++..|+-+++..|+-+..+.. ..+.++++..++...+|++|+.+|.
T Consensus       120 fHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~  198 (703)
T KOG2321|consen  120 FHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGV  198 (703)
T ss_pred             ehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCce
Confidence            65432111111111222222333 777888888899999999999999888863 5688999999999999999999999


Q ss_pred             EEEEEcccCccccccceeeeccCCCC-----CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEee
Q 009373          356 IHMYEIINDCTEANVLLVATWIPHTG-----PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV  428 (536)
Q Consensus       356 i~iwd~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  428 (536)
                      |.+||.++......+........|.+     .|+++.|+.  -.+++|..+|.|.|||+++....               
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl---------------  263 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL---------------  263 (703)
T ss_pred             EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce---------------
Confidence            99999998855444333333344444     499999964  58999999999999999985322               


Q ss_pred             CCCeeeeccccccEEEEEecC----CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCc
Q 009373          429 EPPQRMLHGFECNLLSVDIGA----DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT  504 (536)
Q Consensus       429 ~~~~~~~~~~~~~v~~~~~~~----~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  504 (536)
                         ...-|+...++..+.|.+    +.++|.. ...++|||-.+|+........           -....+++-|+++++
T Consensus       264 ---~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-----------~~lND~C~~p~sGm~  328 (703)
T KOG2321|consen  264 ---LVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-----------SDLNDFCFVPGSGMF  328 (703)
T ss_pred             ---eecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeecccc-----------CCcCceeeecCCceE
Confidence               233355667777777633    2666665 467999999999876543221           124567788888777


Q ss_pred             cee
Q 009373          505 DQC  507 (536)
Q Consensus       505 ~~~  507 (536)
                      -.+
T Consensus       329 f~A  331 (703)
T KOG2321|consen  329 FTA  331 (703)
T ss_pred             EEe
Confidence            653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.51  E-value=2.3e-11  Score=116.84  Aligned_cols=239  Identities=10%  Similarity=0.089  Sum_probs=146.8

Q ss_pred             cccEEEEEEecCCCEEEEEe-CCCcEEEEECC-CCce--eeeeCC-CCceEEEEecCCCEEEEEeC-CCcEEEEEcccCc
Q 009373          158 TEAVLTVFVLASAKLLFTSG-YDSIVRMWHLE-DGFS--IASSKP-LGCTIRAVAADKKLLVAGGT-DGFIHCWRAVEVL  231 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs-~dg~v~iwd~~-~~~~--~~~~~~-~~~~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~  231 (536)
                      .+....++++|++++|++++ .++.|.+|+++ ++..  +..... ....-.+++|+++.+++++. ++.|.+|++.+..
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            45577889999999887765 48899999996 3432  222221 12234566799998888764 8899999986421


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeCCCceEeE-------eeeccccEE--EEe
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLK-------VLRHSDWVY--GLA  299 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~~~~~~~~-------~~~~~~~v~--~~~  299 (536)
                      ..         ......+. +......+++  ++++++ +...++.|.+||+.+...+.       .........  .+.
T Consensus       114 ~~---------~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~  183 (330)
T PRK11028        114 IP---------VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH  183 (330)
T ss_pred             CC---------CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence            00         01111121 2223455666  566775 45567999999997633221       111122223  445


Q ss_pred             ecCCEEEEec--CCcEEEEeCCC--Cc--EEEEEcc-----ccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccc
Q 009373          300 PHDTTVASTS--GSDVYIWDTNS--GC--LLTVVNG-----AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTE  367 (536)
Q Consensus       300 ~~~~~l~~~~--d~~i~i~d~~~--~~--~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~  367 (536)
                      |++++++++.  +++|.+||+..  ++  .+..+..     .+......+.++|++++++++.. ++.|.+|++......
T Consensus       184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~  263 (330)
T PRK11028        184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV  263 (330)
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence            9999887776  68999999973  32  2333321     01122346889999999998854 789999999654211


Q ss_pred             cccceeeeccCCCCCeEEEEEcC--CeEEEEeC-CCcEEEEECCc
Q 009373          368 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK  409 (536)
Q Consensus       368 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~  409 (536)
                        ...+..... ......+.+++  ++|+++.. +++|.+|++..
T Consensus       264 --~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        264 --LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             --EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence              112222211 12445678875  67777665 89999998753

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.50  E-value=4.5e-12  Score=113.99  Aligned_cols=205  Identities=14%  Similarity=0.097  Sum_probs=156.4

Q ss_pred             eeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCce----EeEeeeccccEEEEe---ecCCEEEEec-C--CcEEEEeC
Q 009373          249 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK----CLKVLRHSDWVYGLA---PHDTTVASTS-G--SDVYIWDT  318 (536)
Q Consensus       249 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~---~~~~~l~~~~-d--~~i~i~d~  318 (536)
                      ....+++|..++.....|++|-.+|.+.+|....+.    .+..+.....+..+.   ....++++|+ .  ..+.+||+
T Consensus       101 ~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  101 VSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDL  180 (412)
T ss_pred             cccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeec
Confidence            445677888888888889999999999999987443    233334445555555   3345555566 5  67999999


Q ss_pred             CCCcEEEEEcccc--------ccceEEEEEeCC--CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE
Q 009373          319 NSGCLLTVVNGAH--------VGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF  388 (536)
Q Consensus       319 ~~~~~~~~~~~~~--------~~~i~~l~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  388 (536)
                      ...+++..-+...        .-.++++.|-+.  ...|++++.-+.+++||.+.+.     +++..+.--..+|+++..
T Consensus       181 e~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-----RPV~~fd~~E~~is~~~l  255 (412)
T KOG3881|consen  181 EQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-----RPVAQFDFLENPISSTGL  255 (412)
T ss_pred             ccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-----cceeEeccccCcceeeee
Confidence            9986665543211        225678889887  7889999999999999999775     677777777889999888


Q ss_pred             cC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEE
Q 009373          389 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIW  464 (536)
Q Consensus       389 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW  464 (536)
                      .|  +++++|..-|.+..+|++.+...                  ...+.+..+.+.++..++.  +++++|-|..|||+
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~------------------g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIh  317 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLL------------------GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIH  317 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceee------------------ccccCCccCCcceEEEcCCCceEEeeccceeEEEe
Confidence            65  89999999999999999985322                  2335667788888887776  99999999999999


Q ss_pred             eCCchhhHHHHH
Q 009373          465 NFSQAFEIERRA  476 (536)
Q Consensus       465 ~~~~~~~~~~~~  476 (536)
                      |+.+...+....
T Consensus       318 D~ktrkll~kvY  329 (412)
T KOG3881|consen  318 DIKTRKLLHKVY  329 (412)
T ss_pred             ecccchhhhhhh
Confidence            999977665543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.50  E-value=1.4e-12  Score=131.03  Aligned_cols=266  Identities=13%  Similarity=0.142  Sum_probs=177.7

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEE----EecCCCEEEEEeCCCcEEEEEcccCccc
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRA----VAADKKLLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~----~~~~~~~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      +++++..+-.  ++|++|+ .-.+.+||+..+..+..+.... ..+..    +...+..++++..-+.+..=+....   
T Consensus         8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~---   81 (967)
T KOG0974|consen    8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ---   81 (967)
T ss_pred             ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh---
Confidence            4455555543  5666554 4579999999886655442211 11111    1123445666665555544332111   


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEE-------EeecCCEEE
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVA  306 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~  306 (536)
                                 ....+..+-.. ..+-++...++.++.+..+-+||...+.....+.+...+.-       .+++.-+++
T Consensus        82 -----------~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~  149 (967)
T KOG0974|consen   82 -----------IIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIA  149 (967)
T ss_pred             -----------hhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEE
Confidence                       11111111111 23334778889999999999999988877777665443322       225666788


Q ss_pred             Eec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373          307 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  385 (536)
Q Consensus       307 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  385 (536)
                      +|+ -+.|.+|+....+....+ .+|.+.|.++.++.+|.++++.|+|.++++|++.+.+.     ...+..+|...|..
T Consensus       150 ~gsv~~~iivW~~~~dn~p~~l-~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~-----~~~~~fgHsaRvw~  223 (967)
T KOG0974|consen  150 SGSVFGEIIVWKPHEDNKPIRL-KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV-----LGCTGFGHSARVWA  223 (967)
T ss_pred             eccccccEEEEeccccCCccee-cccCCceEEEEEccCCcEEEEEecCcceeeeecccccc-----cCcccccccceeEE
Confidence            888 799999998744333334 48999999999999999999999999999999999842     22366799999999


Q ss_pred             EEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc-ccEEEEEecCC--EEEEecCCCeEE
Q 009373          386 LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE-CNLLSVDIGAD--RIVCGGEEGIVR  462 (536)
Q Consensus       386 l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~sg~~Dg~i~  462 (536)
                      +.|.|+.+++++.|.+.++|+.....-                    ..+.+|. ..+..+.....  .++|++.||.++
T Consensus       224 ~~~~~n~i~t~gedctcrvW~~~~~~l--------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  224 CCFLPNRIITVGEDCTCRVWGVNGTQL--------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             EEeccceeEEeccceEEEEEeccccee--------------------hhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence            999999999999999999996653210                    1233333 23455554444  899999999999


Q ss_pred             EEeCCc
Q 009373          463 IWNFSQ  468 (536)
Q Consensus       463 vW~~~~  468 (536)
                      +|++..
T Consensus       284 ~~~l~~  289 (967)
T KOG0974|consen  284 LWDLNG  289 (967)
T ss_pred             hhhhhc
Confidence            999875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=8.6e-13  Score=121.68  Aligned_cols=294  Identities=17%  Similarity=0.122  Sum_probs=195.2

Q ss_pred             eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEE
Q 009373          193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRI  266 (536)
Q Consensus       193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l  266 (536)
                      ...+.+|.+.|..+.  ..|..|++|+.|..|.+||+..+..            ...-..+|...|..-.|    +...+
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------~l~f~SGH~~NvfQaKFiP~s~d~ti  202 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------KLSFESGHCNNVFQAKFIPFSGDRTI  202 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc------------ccccccccccchhhhhccCCCCCcCc
Confidence            345678888887776  5689999999999999999977642            22234468777777677    44679


Q ss_pred             EEEecCCeEEEEeCC-CceEeEee---eccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEc--ccccc---
Q 009373          267 YSGSWDMTVRVWDRA-LLKCLKVL---RHSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVN--GAHVG---  333 (536)
Q Consensus       267 ~s~s~dg~i~iwd~~-~~~~~~~~---~~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~--~~~~~---  333 (536)
                      ++++.||.|++=.+. ++.+..+.   .|.+.|..++  |+ ..-|.+++ |+.+.-+|++.+.+...+.  ..+..   
T Consensus       203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v  282 (559)
T KOG1334|consen  203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV  282 (559)
T ss_pred             eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Confidence            999999999987764 34333232   3888888777  44 34455555 8999999999876544332  22333   


Q ss_pred             ceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccC------CCCCeEEEEEc--CCeEEEEeCCCcEEE
Q 009373          334 NTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP------HTGPVNSLAFE--FPWLVSAAGDGKLSL  404 (536)
Q Consensus       334 ~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~------h~~~v~~l~~~--~~~l~s~s~dg~i~v  404 (536)
                      ..++++.+|... .+++|+.|-.+++||.+.-........+..+..      ..-.|++++|+  +.-|.++-.|-.|++
T Consensus       283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYL  362 (559)
T KOG1334|consen  283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYL  362 (559)
T ss_pred             eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEE
Confidence            678889998665 899999999999999876543322222233322      24478999997  455666667778999


Q ss_pred             EECCcccccCCCCCCCceeeEEeeCCCeeeecccccc--EEEEEe---cCCEEEEecCCCeEEEEeCCchhhHHHHHHhh
Q 009373          405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN--LLSVDI---GADRIVCGGEEGIVRIWNFSQAFEIERRARAL  479 (536)
Q Consensus       405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~---~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~  479 (536)
                      +.-...... .+......     -....+.+.||...  |-.+.|   ...|+++|+.-|.|.||+-.+++.+.-.    
T Consensus       363 F~~~~~~G~-~p~~~s~~-----~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M----  432 (559)
T KOG1334|consen  363 FNKSMGDGS-EPDPSSPR-----EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM----  432 (559)
T ss_pred             eccccccCC-CCCCCcch-----hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh----
Confidence            954332111 00000000     01111235666543  444444   3459999999999999999998766533    


Q ss_pred             hcccchhHHHhhhhccccccCCCCcceeEeecccC
Q 009373          480 RGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKN  514 (536)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  514 (536)
                      ++.+      .-+.+++-+|.-..||++.++....
T Consensus       433 egDr------~VVNCLEpHP~~PvLAsSGid~DVK  461 (559)
T KOG1334|consen  433 EGDR------HVVNCLEPHPHLPVLASSGIDHDVK  461 (559)
T ss_pred             hccc------ceEeccCCCCCCchhhccCCcccee
Confidence            2221      2467899999999999987766544

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.46  E-value=2.6e-11  Score=114.26  Aligned_cols=283  Identities=14%  Similarity=0.105  Sum_probs=182.5

Q ss_pred             CccccEEEEEEecCCCE-EEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE---ecCCCEEEEEeCCCcEEEEEcccCc
Q 009373          156 GHTEAVLTVFVLASAKL-LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV---AADKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~-l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~---~~~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      +|...-+.|..+|||.| +|||.+--.|++||+.+-.... -......++.|   +.|-..++.-..|.+|.+-.-..  
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF-ERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF-ERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeee-eecccccceeEEEeccchhhheEeecCceeeehhhcC--
Confidence            67888899999999996 5678889999999987543221 11222233333   33444455555566664432100  


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEE
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA  306 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~  306 (536)
                                   ....+ .-...-.+++++  .--|+.++....|+=++++.|+.+..+. ..+.++++.  +...+|+
T Consensus       126 -------------~hy~~-RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla  191 (703)
T KOG2321|consen  126 -------------RHYRT-RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA  191 (703)
T ss_pred             -------------eeeee-ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence                         00000 011122344441  1234555556778889999999999888 446666665  6677888


Q ss_pred             Eec-CCcEEEEeCCCCcEEEEEcc-----cccc-----ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          307 STS-GSDVYIWDTNSGCLLTVVNG-----AHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       307 ~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~-----~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                      +|+ +|.|..||.++...+..+..     .|.+     .|+++.|+.+|-.+++|+.+|.|.|||++...     ..+..
T Consensus       192 ~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~-----pl~~k  266 (703)
T KOG2321|consen  192 CGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK-----PLLVK  266 (703)
T ss_pred             ecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----ceeec
Confidence            888 89999999999876666532     2333     39999999999999999999999999999983     12222


Q ss_pred             ccCCCCCeEEEEEcC----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCE
Q 009373          376 WIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADR  451 (536)
Q Consensus       376 ~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  451 (536)
                      -.+..-+|..+.|.+    +.+++. ....++|||-.++.......                  ..+...-+|.-++..+
T Consensus       267 dh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE------------------pt~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  267 DHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE------------------PTSDLNDFCFVPGSGM  327 (703)
T ss_pred             ccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc------------------ccCCcCceeeecCCce
Confidence            233456888888843    344443 45679999988764332211                  1223444566677779


Q ss_pred             EEEecCCCeEEEEeCCchhhHHHHHHhh
Q 009373          452 IVCGGEEGIVRIWNFSQAFEIERRARAL  479 (536)
Q Consensus       452 l~sg~~Dg~i~vW~~~~~~~~~~~~~~~  479 (536)
                      +.++-+++.+..|=++.-.+.-+....+
T Consensus       328 ~f~Ane~~~m~~yyiP~LGPaPrWCSfL  355 (703)
T KOG2321|consen  328 FFTANESSKMHTYYIPSLGPAPRWCSFL  355 (703)
T ss_pred             EEEecCCCcceeEEccccCCCchhhhHH
Confidence            9999999999888877654444443333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.46  E-value=6.8e-11  Score=115.84  Aligned_cols=264  Identities=14%  Similarity=0.065  Sum_probs=171.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEe
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  249 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  249 (536)
                      +..+++++.+|.|..+|..+|+.+...............++..+++++.+|.+..+|..+++..             ...
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~-------------W~~  131 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKEL-------------WRA  131 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEe-------------eee
Confidence            6788889999999999999999887765443322233456788999999999999999887521             111


Q ss_pred             eCCccCEEE-EEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEE-------EeecCCEEEEec-CCcEEEEeCCC
Q 009373          250 WEHEGPITS-LALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG-------LAPHDTTVASTS-GSDVYIWDTNS  320 (536)
Q Consensus       250 ~~h~~~v~~-l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~-------~~~~~~~l~~~~-d~~i~i~d~~~  320 (536)
                      . ..+.+.+ ....++.++.++.+|.+..||.++++.+..+........       +..++ .++.+. ++.+..+|+++
T Consensus       132 ~-~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~-~v~~~~~~g~v~ald~~t  209 (377)
T TIGR03300       132 K-LSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADG-GVLVGFAGGKLVALDLQT  209 (377)
T ss_pred             c-cCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECC-EEEEECCCCEEEEEEccC
Confidence            1 1112221 223567788888999999999999998887763332211       11334 455555 79999999999


Q ss_pred             CcEEEEEcccccc---c---eEEEEEeC--CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCe
Q 009373          321 GCLLTVVNGAHVG---N---TKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW  392 (536)
Q Consensus       321 ~~~~~~~~~~~~~---~---i~~l~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~  392 (536)
                      |+.+.........   .   ...+.-+|  .+..+++++.+|.++.||..++.      .+....  ..........++.
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~------~~W~~~--~~~~~~p~~~~~~  281 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR------VLWKRD--ASSYQGPAVDDNR  281 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc------EEEeec--cCCccCceEeCCE
Confidence            9877554311110   0   00010011  35678888899999999998873      322222  1122334456788


Q ss_pred             EEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          393 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       393 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ++.++.||.|..+|..++...+....                +.+.  ...+....++.+++++.||.|+++|..+|+.+
T Consensus       282 vyv~~~~G~l~~~d~~tG~~~W~~~~----------------~~~~--~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       282 LYVTDADGVVVALDRRSGSELWKNDE----------------LKYR--QLTAPAVVGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             EEEECCCCeEEEEECCCCcEEEcccc----------------ccCC--ccccCEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence            99999999999999988754433210                0000  11122234678999999999999999998776


Q ss_pred             HH
Q 009373          473 ER  474 (536)
Q Consensus       473 ~~  474 (536)
                      .+
T Consensus       344 ~~  345 (377)
T TIGR03300       344 AR  345 (377)
T ss_pred             EE
Confidence            53

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.43  E-value=8.1e-11  Score=103.27  Aligned_cols=235  Identities=11%  Similarity=0.201  Sum_probs=159.7

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEE-EEecC------CeEE
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY-SGSWD------MTVR  276 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~d------g~i~  276 (536)
                      .++..|..-+++|..+| .+||+.+.-+           ......+....-.+..+-|..++|+ .|+.+      ..|.
T Consensus        11 vs~NQD~ScFava~~~G-friyn~~P~k-----------e~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkvi   78 (346)
T KOG2111|consen   11 VSFNQDHSCFAVATDTG-FRIYNCDPFK-----------ESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVI   78 (346)
T ss_pred             EEEccCCceEEEEecCc-eEEEecCchh-----------hhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEE
Confidence            44556666677766665 7888874311           0001111111123334444555544 34333      4799


Q ss_pred             EEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCC-CCcEEEEEccc-cccceEEEEEeCCCCEEEE-EcCC
Q 009373          277 VWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTN-SGCLLTVVNGA-HVGNTKSLARSHTGDFLFT-GGED  353 (536)
Q Consensus       277 iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~-~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~t-g~~d  353 (536)
                      |||=...+++.++....+|.++......+++.-.+.|.||... +.+.++.+... ......+++-..+..+||. |-.-
T Consensus        79 IWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~  158 (346)
T KOG2111|consen   79 IWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT  158 (346)
T ss_pred             EEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence            9998888899999999999999999999999999999999988 44566655421 2334444444334445554 4456


Q ss_pred             CcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCc-EEEEECCcccccCCCCCCCceeeEEeeCC
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGK-LSLIDVRKLLRSGRPTSGKRVSRVIEVEP  430 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  430 (536)
                      |.|+|-|+......    ......+|.+.|.|++.+  +..+||+|..|+ |+|||..++.......-|           
T Consensus       159 GqvQi~dL~~~~~~----~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-----------  223 (346)
T KOG2111|consen  159 GQVQIVDLASTKPN----APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-----------  223 (346)
T ss_pred             ceEEEEEhhhcCcC----CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-----------
Confidence            99999999876321    235667999999999996  689999999998 899999987544332211           


Q ss_pred             CeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhh
Q 009373          431 PQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       431 ~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                            .....+.+++|+++  +|+.+|+-|+|.|+.+.....
T Consensus       224 ------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~  260 (346)
T KOG2111|consen  224 ------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN  260 (346)
T ss_pred             ------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence                  12256778887776  999999999999999987543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.43  E-value=1.5e-12  Score=121.43  Aligned_cols=182  Identities=19%  Similarity=0.229  Sum_probs=135.7

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      -+.+..|.+.|.|-.|+|+|.-|+|++.||.|++|. .+|....++.....+|+|..  |+.+.++-+.. +.+.+=.+.
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~  174 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLA  174 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecc
Confidence            356778999999999999999999999999999999 45655555555556666665  66554443322 344443332


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCE
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTT  304 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~  304 (536)
                      .             .........|.+-|.++.|  ..+.+++|+.|-..++||.........-.|.-+|++++  |+ +.
T Consensus       175 ~-------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~  240 (737)
T KOG1524|consen  175 A-------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KD  240 (737)
T ss_pred             c-------------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cc
Confidence            2             3456678899999999999  56899999999999999976444444444889999998  44 56


Q ss_pred             EEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          305 VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       305 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      ++.++-++++            +.....+.|..++|++||..++.|+..|.+.+=.
T Consensus       241 ~~v~S~nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  241 YLLWSYNTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             eeeeeeeeee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence            6666655555            3345778899999999999999999999876543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.41  E-value=8.7e-11  Score=103.10  Aligned_cols=199  Identities=17%  Similarity=0.164  Sum_probs=151.0

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEe
Q 009373          202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd  279 (536)
                      .+.++..|...++++.....|.||.....          .......++..|...|+.++|  ..+.|++|+.|+.-++|.
T Consensus        14 tchAwn~drt~iAv~~~~~evhiy~~~~~----------~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen   14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGA----------DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             eeeeecCCCceEEeccCCceEEEEEecCC----------CCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            34455688999999999999999987554          225577888999999999999  667999999999999999


Q ss_pred             C-CCceEe---EeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEE---EEEccccccceEEEEEeCCCCEEEE
Q 009373          280 R-ALLKCL---KVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL---TVVNGAHVGNTKSLARSHTGDFLFT  349 (536)
Q Consensus       280 ~-~~~~~~---~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~~i~~l~~~~~~~~l~t  349 (536)
                      . ..++-.   ..++++...+++.  |.++.|++|+ ...|.||-++..+.-   ..++..+.+.|+++.|+|++-+|++
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence            8 333322   2334888888887  8899999998 466888877654432   1122357788999999999999999


Q ss_pred             EcCCCcEEEEEcccCcccc-----------c-cceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcc
Q 009373          350 GGEDGAIHMYEIINDCTEA-----------N-VLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       350 g~~dg~i~iwd~~~~~~~~-----------~-~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      |+.|+.++||..--.....           . -..+..+....+.|..+.|+  +..|+-.+.|+.+.+=|....
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            9999999999753211110           0 01233344567889999998  489999999999999998765

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.40  E-value=6.2e-10  Score=106.85  Aligned_cols=298  Identities=14%  Similarity=0.098  Sum_probs=173.2

Q ss_pred             CEE-EEEeCCCcEEEEECCCCceeeeeCCCCce--EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373          171 KLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  247 (536)
Q Consensus       171 ~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  247 (536)
                      +++ ++-..++.|.+.|..+.+.+..+......  ...+++|++++++++.||.|.++|+.+.+             .+.
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------------~v~   72 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------------VVA   72 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------------EEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------------EEE
Confidence            444 45567899999999999999998764442  24567999999999999999999997753             333


Q ss_pred             EeeCCccCEEEEEE--eCCEEEEE-ecCCeEEEEeCCCceEeEeeec--------cccEEEEe--ecCC-EEEEecC-Cc
Q 009373          248 RLWEHEGPITSLAL--DLTRIYSG-SWDMTVRVWDRALLKCLKVLRH--------SDWVYGLA--PHDT-TVASTSG-SD  312 (536)
Q Consensus       248 ~~~~h~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~--------~~~v~~~~--~~~~-~l~~~~d-~~  312 (536)
                      ++... ....++++  +|++++++ ..++.+.++|.++.+.++.+..        ...+.++.  +... ++++--+ +.
T Consensus        73 ~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~  151 (369)
T PF02239_consen   73 TIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGE  151 (369)
T ss_dssp             EEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTE
T ss_pred             EEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCe
Confidence            44332 33456666  88888766 4789999999999999988762        23455654  5555 4444454 88


Q ss_pred             EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceee-eccCCCCCeEEEE---
Q 009373          313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVA-TWIPHTGPVNSLA---  387 (536)
Q Consensus       313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~---  387 (536)
                      |.+.|....+.+..-............|+|++++++++ ..+..|-++|..+.....   .+. --..|..++..+-   
T Consensus       152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~---~i~~g~~p~~~~~~~~php~  228 (369)
T PF02239_consen  152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA---LIDTGKKPHPGPGANFPHPG  228 (369)
T ss_dssp             EEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE---EEE-SSSBEETTEEEEEETT
T ss_pred             EEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE---EeeccccccccccccccCCC
Confidence            98889887654432221244567788999999987664 567789999988773211   110 0123444444332   


Q ss_pred             --------EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE-EEEEecCCEEEEe---
Q 009373          388 --------FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL-LSVDIGADRIVCG---  455 (536)
Q Consensus       388 --------~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~sg---  455 (536)
                              -.....++.-....+.+||..+.+         .+          +.+....... ...+|++.++...   
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk---------vv----------~~I~~~G~glFi~thP~s~~vwvd~~~  289 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK---------VV----------KTIPTQGGGLFIKTHPDSRYVWVDTFL  289 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTS---------EE----------EEEE-SSSS--EE--TT-SEEEEE-TT
T ss_pred             cceEEeeccccceecccccCCccccchhhcCe---------EE----------EEEECCCCcceeecCCCCccEEeeccC
Confidence                    112222222222344455544421         11          1122222222 2335666677666   


Q ss_pred             -cCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373          456 -GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       456 -~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  513 (536)
                       ...+.|.++|..+.+.+.......         ..+..+++|+++|+.+-.+.++.++
T Consensus       290 ~~~~~~v~viD~~tl~~~~~i~~~~---------~~~~~h~ef~~dG~~v~vS~~~~~~  339 (369)
T PF02239_consen  290 NPDADTVQVIDKKTLKVVKTITPGP---------GKRVVHMEFNPDGKEVWVSVWDGNG  339 (369)
T ss_dssp             -SSHT-EEEEECCGTEEEE-HHHHH---------T--EEEEEE-TTSSEEEEEEE--TT
T ss_pred             CCCCceEEEEECcCcceeEEEeccC---------CCcEeccEECCCCCEEEEEEecCCC
Confidence             556899999999986655543221         1226789999999999988887664

...

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.38  E-value=8.7e-11  Score=103.37  Aligned_cols=303  Identities=14%  Similarity=0.104  Sum_probs=183.4

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC-CceEEEEecCCC-EEEEEeCCCcEEEEEcccCccceecccCc
Q 009373          163 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGS  240 (536)
Q Consensus       163 ~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  240 (536)
                      -++|+|+|+++|+++.- .+.|=|.++-+..+-+..- ...-..+..+.. .|.....++.|.+|++...+         
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe---------   82 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE---------   82 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecce---------
Confidence            35799999999999865 7778887776544332111 011122334444 45566788999999996542         


Q ss_pred             ccccceEEeeCCccCEEEEEE--eC-CEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEeecCCEEEEec--CC--
Q 009373          241 EKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--GS--  311 (536)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~--  311 (536)
                          -...+.....++.+++|  +| ..|.+...|-.|.+|.+.+.+....-.  +.....++.++|++.+..+  |-  
T Consensus        83 ----w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd  158 (447)
T KOG4497|consen   83 ----WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKD  158 (447)
T ss_pred             ----eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHH
Confidence                34455667788999999  66 456778889999999998877654432  4445556668888776665  21  


Q ss_pred             ---------------------------------cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          312 ---------------------------------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       312 ---------------------------------~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                                                       .+.+||.--.-.+..+  ...-++..++|+|.+++|++|+.|+.+||
T Consensus       159 yv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrv  236 (447)
T KOG4497|consen  159 YVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRV  236 (447)
T ss_pred             HHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhh
Confidence                                             1223322111111111  12346888999999999999999999888


Q ss_pred             EEcccCccc------------------------------------------------------cccceeeec------cC
Q 009373          359 YEIINDCTE------------------------------------------------------ANVLLVATW------IP  378 (536)
Q Consensus       359 wd~~~~~~~------------------------------------------------------~~~~~~~~~------~~  378 (536)
                      .+--+-+.-                                                      .....+..+      ..
T Consensus       237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn  316 (447)
T KOG4497|consen  237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN  316 (447)
T ss_pred             hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence            653211100                                                      000011111      12


Q ss_pred             CCCCeEEEEEcC--CeEEEEeCC--CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EE
Q 009373          379 HTGPVNSLAFEF--PWLVSAAGD--GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI  452 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l  452 (536)
                      ....+.-++|++  .+++|-...  +.+-+||++..+.-.                  ...+.|  +|.++.+++.  .|
T Consensus       317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a------------------vLiQk~--piraf~WdP~~prL  376 (447)
T KOG4497|consen  317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA------------------VLIQKH--PIRAFEWDPGRPRL  376 (447)
T ss_pred             cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh------------------hhhhcc--ceeEEEeCCCCceE
Confidence            234567788876  355544332  568999998742111                  011233  3445555543  56


Q ss_pred             EEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373          453 VCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       453 ~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                      +.+.....+++|.......+.....   |        ..++.+.|..+|..++.|+-++.
T Consensus       377 ~vctg~srLY~W~psg~~~V~vP~~---G--------F~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  377 VVCTGKSRLYFWAPSGPRVVGVPKK---G--------FNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EEEcCCceEEEEcCCCceEEecCCC---C--------ceeeeEEecCCCcEEEEEcCCce
Confidence            5555566799999887554432222   2        34678999999999988765543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=2e-10  Score=113.65  Aligned_cols=214  Identities=12%  Similarity=0.017  Sum_probs=141.1

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeC---CCcEEEEECCCCcee--eeeCCCCceEEEEecCCCEEEEE-eCCC--cEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAG-GTDG--FIH  223 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~---dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg-~~dg--~i~  223 (536)
                      +.+..+...+.+.+|+|||+.|+..+.   +..+.+|++.+++..  ..+.++.. ...++|||+.|+.. +.+|  .|+
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEE
Confidence            455667788999999999998886543   457999999888543  33334332 35788999988754 4455  488


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC-Ce--EEEEeCCCceEeEeeeccccE--E
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-MT--VRVWDRALLKCLKVLRHSDWV--Y  296 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~v--~  296 (536)
                      +||+.++.              ...+..+...+....|  +++.|+..+.+ +.  |.++|+.+++...........  .
T Consensus       271 ~~d~~tg~--------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~  336 (429)
T PRK03629        271 VMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  336 (429)
T ss_pred             EEECCCCC--------------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence            88887652              2233344455677788  77878776654 44  555577666543322222222  4


Q ss_pred             EEeecCCEEEEec-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc---EEEEEcccCccccc
Q 009373          297 GLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA---IHMYEIINDCTEAN  369 (536)
Q Consensus       297 ~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~---i~iwd~~~~~~~~~  369 (536)
                      .++|+|+.++... +   ..|.+||+.+++.. .+...  .......|+|||+.|+.++.++.   +.++++...     
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-----  408 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-----  408 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-----
Confidence            4569999887755 2   35888999888644 33222  22346789999999999888765   566666433     


Q ss_pred             cceeeeccCCCCCeEEEEEcC
Q 009373          370 VLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~  390 (536)
                        ....+.+|.+.+...+|+|
T Consensus       409 --~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        409 --FKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             --CeEECccCCCCcCCcccCC
Confidence              3455667888888888876

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=9.1e-10  Score=98.36  Aligned_cols=246  Identities=19%  Similarity=0.199  Sum_probs=152.5

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC---CCCceEEEEecCC-CEEEEEeCCCcEEEEEcccCccce
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVAADK-KLLVAGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~  234 (536)
                      -.+..++|++.-..+|++..|-.|++||-.. .+...++   ..+..++++.|.+ ..|++|... -|.+|.........
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccc
Confidence            4567788988777788999999999999776 3333332   2333444555654 456666655 58899865321100


Q ss_pred             ecc-cCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCceEeEeee-ccccE--EEEeecCCEEEE
Q 009373          235 FDI-SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKVLR-HSDWV--YGLAPHDTTVAS  307 (536)
Q Consensus       235 ~~~-~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~v--~~~~~~~~~l~~  307 (536)
                      -.. ..+.....+....+| .+|+++.|  |+..+++++ .|..|.|||..++..+.... ..+.+  ...+|++.++++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence            000 011122334455566 78999999  778888887 46789999999988776664 33334  344599999998


Q ss_pred             ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc---------cceeeec-
Q 009373          308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN---------VLLVATW-  376 (536)
Q Consensus       308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~---------~~~~~~~-  376 (536)
                      +. |+..++|+............ ..+.|...+|+|+|.+|+.... |.-++|.+.-......         ...+..+ 
T Consensus       256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence            88 99999996554332222222 3458999999999987654432 3345565543321111         1111111 


Q ss_pred             -----cC---CCCCeEEEEEcC--CeEEEEeCCC--------cEEEEECCc
Q 009373          377 -----IP---HTGPVNSLAFEF--PWLVSAAGDG--------KLSLIDVRK  409 (536)
Q Consensus       377 -----~~---h~~~v~~l~~~~--~~l~s~s~dg--------~i~vwd~~~  409 (536)
                           .+   -.+++.+++|+|  .+|++.-..+        .|.+||.+.
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence                 11   256889999987  6888766543        356676654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.35  E-value=1.3e-09  Score=106.88  Aligned_cols=259  Identities=15%  Similarity=0.029  Sum_probs=158.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      ++..++.++.++.+..+|..+|+.+................+..++.++.+|.+..||..+++..- .....   .....
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~---~~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLW-TYSRV---TPALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceee-EEccC---CCcee
Confidence            467788889999999999999998876654322111112345678888899999999998875211 10000   00000


Q ss_pred             eeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecccc-----------E-EEEeecCCEEEEe-cCCcEEE
Q 009373          249 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-----------V-YGLAPHDTTVAST-SGSDVYI  315 (536)
Q Consensus       249 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~l~~~-~d~~i~i  315 (536)
                      .....    +....++.++.+..+|.+..+|..+++.+........           + .+....+..++.+ .++.+..
T Consensus       180 ~~~~~----sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a  255 (377)
T TIGR03300       180 LRGSA----SPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA  255 (377)
T ss_pred             ecCCC----CCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence            11111    1123346788888899999999999987765431100           0 0111233444444 4899999


Q ss_pred             EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEEEEcCCeEE
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLV  394 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~  394 (536)
                      +|..+|+.+.....  . ......  ..+..+++++.||.+..+|..++.      .+..... ......+....++.|+
T Consensus       256 ~d~~tG~~~W~~~~--~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~------~~W~~~~~~~~~~ssp~i~g~~l~  324 (377)
T TIGR03300       256 LDLRSGRVLWKRDA--S-SYQGPA--VDDNRLYVTDADGVVVALDRRSGS------ELWKNDELKYRQLTAPAVVGGYLV  324 (377)
T ss_pred             EECCCCcEEEeecc--C-CccCce--EeCCEEEEECCCCeEEEEECCCCc------EEEccccccCCccccCEEECCEEE
Confidence            99999988776541  1 111222  246778888899999999998883      3322211 1112233334568999


Q ss_pred             EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEE
Q 009373          395 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIW  464 (536)
Q Consensus       395 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW  464 (536)
                      +++.+|.|+++|..+++..++...+                  ......+....++.|+.++.||.|+.+
T Consensus       325 ~~~~~G~l~~~d~~tG~~~~~~~~~------------------~~~~~~sp~~~~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       325 VGDFEGYLHWLSREDGSFVARLKTD------------------GSGIASPPVVVGDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEcC------------------CCccccCCEEECCEEEEEeCCceEEEe
Confidence            9999999999999876443321110                  001122223445678899999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.35  E-value=9.4e-13  Score=85.10  Aligned_cols=45  Identities=33%  Similarity=0.637  Sum_probs=40.4

Q ss_pred             ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHH
Q 009373           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY  108 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~  108 (536)
                      +..||+|++.+||+||+++||.++++|||+|++++.++.+|+.++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            468999999999999999999999999999999999899999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1e-10  Score=116.07  Aligned_cols=205  Identities=17%  Similarity=0.149  Sum_probs=132.2

Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEe--eec
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKV--LRH  291 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~--~~~  291 (536)
                      +..|.+||....              ....+..|...+.+..|  +++.|+.++.+   ..|++||+.+++....  +..
T Consensus       183 ~~~i~i~d~dg~--------------~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g  248 (429)
T PRK01742        183 PYEVRVADYDGF--------------NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG  248 (429)
T ss_pred             eEEEEEECCCCC--------------CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC
Confidence            468999987543              23345677888999999  77888887654   3799999988764332  221


Q ss_pred             cccEEEEeecCCEEEEec--CCcE--EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCcc
Q 009373          292 SDWVYGLAPHDTTVASTS--GSDV--YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCT  366 (536)
Q Consensus       292 ~~~v~~~~~~~~~l~~~~--d~~i--~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~  366 (536)
                      ...-..++|+|+.|+.+.  ++.+  .+||+.+++.. .+. .+...+....|+|+|+.|+.++ .+|...||++.....
T Consensus       249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~  326 (429)
T PRK01742        249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG  326 (429)
T ss_pred             ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence            122245669999887754  5654  45577666543 343 3666788999999999766554 678899998765421


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS  444 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  444 (536)
                      .     ...+ .+..  ....|+|  ++|+.++.++ +.+||+.++....                   ....+.....+
T Consensus       327 ~-----~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-------------------lt~~~~~~~~~  378 (429)
T PRK01742        327 G-----ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-------------------LSSTFLDESPS  378 (429)
T ss_pred             C-----eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-------------------ecCCCCCCCce
Confidence            1     1111 2333  3466765  6787777765 6669987642110                   00111112345


Q ss_pred             EEecCCEEEEecCCCeEEEEeCC
Q 009373          445 VDIGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       445 ~~~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      +++++++|+.++.+|.+.+|.+.
T Consensus       379 ~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        379 ISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEE
Confidence            77888899999999999888864

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.34  E-value=2.1e-09  Score=103.25  Aligned_cols=288  Identities=14%  Similarity=0.125  Sum_probs=165.5

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEEEEEe-CCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVAGG-TDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~-~dg~i~vwd~  227 (536)
                      .+..+......-..+.|+|||+++++++.||.|.++|+.+++.+.++..... .-.++++||++++++. .++.+.++|.
T Consensus        28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred             EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence            4566665544445578999999999999999999999999999988865443 4467789999888775 6899999998


Q ss_pred             ccCccceecccCcccccceEEeeC-------CccCEEEEEE--eCCEEEEE-ecCCeEEEEeCCCceEe--EeeeccccE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWE-------HEGPITSLAL--DLTRIYSG-SWDMTVRVWDRALLKCL--KVLRHSDWV  295 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~--~~~~~~~~v  295 (536)
                      ++.+             .+..+..       ....+..+..  ....++.. -.-+.|-+-|....+.+  ..+......
T Consensus       108 ~tle-------------~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~  174 (369)
T PF02239_consen  108 ETLE-------------PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP  174 (369)
T ss_dssp             TT---------------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred             cccc-------------ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence            7754             2222211       2345666654  33434444 44588888887665433  233333333


Q ss_pred             E--EEeecCCEEEEec--CCcEEEEeCCCCcEEEEEcc---ccccceEEEEEeCCCCEE-EEEc---------CCCcEEE
Q 009373          296 Y--GLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFL-FTGG---------EDGAIHM  358 (536)
Q Consensus       296 ~--~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l-~tg~---------~dg~i~i  358 (536)
                      .  .+.+++++++++.  .+.|-++|..+++.+..+..   .|..+...+ .+|....+ +++.         ....+.+
T Consensus       175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v  253 (369)
T PF02239_consen  175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSV  253 (369)
T ss_dssp             EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred             cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCcccc
Confidence            3  3448888877765  68899999999988776642   355555444 34433222 2221         1223334


Q ss_pred             EEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEE----eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373          359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA----AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  432 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (536)
                      ||....      +.+.++....++ .-+..+|  .++.+.    ...+.|.++|.++.......                
T Consensus       254 ~d~~~w------kvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i----------------  310 (369)
T PF02239_consen  254 HDDYAW------KVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI----------------  310 (369)
T ss_dssp             STTTBT------SEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H----------------
T ss_pred             chhhcC------eEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE----------------
Confidence            554444      667777666666 6666676  677777    44589999999985221110                


Q ss_pred             eeeccccccEEEEEecC--C--EEEEecCCCeEEEEeCCchhhHHHHH
Q 009373          433 RMLHGFECNLLSVDIGA--D--RIVCGGEEGIVRIWNFSQAFEIERRA  476 (536)
Q Consensus       433 ~~~~~~~~~v~~~~~~~--~--~l~sg~~Dg~i~vW~~~~~~~~~~~~  476 (536)
                        ..+....+..+.++.  +  ++.....+|.|.+||..+.+++.+..
T Consensus       311 --~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  311 --TPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             --HHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             --eccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence              011112255555554  4  44455555589999999987776543

...

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.30  E-value=7.7e-10  Score=98.15  Aligned_cols=247  Identities=12%  Similarity=0.203  Sum_probs=151.6

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeeeCCCCc------------eEEEEe----cCCCEEEE
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGC------------TIRAVA----ADKKLLVA  215 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~~~~------------~v~~~~----~~~~~l~s  215 (536)
                      -.+-|.+|.|...|.+||||..+|.|.+|.-+...     ....++.|..            .|..+.    .+...++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            35678999999999999999999999999754332     2333444432            122222    24457888


Q ss_pred             EeCCCcEEEEEcccCccce--ecccCcc--------------------cccceEE-eeCCccCEEEEEE--eCCEEEEEe
Q 009373          216 GGTDGFIHCWRAVEVLPHL--FDISGSE--------------------KQNTQFR-LWEHEGPITSLAL--DLTRIYSGS  270 (536)
Q Consensus       216 g~~dg~i~vwd~~~~~~~~--~~~~~~~--------------------~~~~~~~-~~~h~~~v~~l~~--~~~~l~s~s  270 (536)
                      .+.|.+|++|.+.......  +......                    ...+... -..|+-.|.+|.+  |...++++ 
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence            8999999999986543222  0000000                    0001111 1257888999999  44555554 


Q ss_pred             cCCeEEEEeCCCce-EeEeee--------ccccEEEEe--ec-CC-EEEEecCCcEEEEeCCCCcEEE------------
Q 009373          271 WDMTVRVWDRALLK-CLKVLR--------HSDWVYGLA--PH-DT-TVASTSGSDVYIWDTNSGCLLT------------  325 (536)
Q Consensus       271 ~dg~i~iwd~~~~~-~~~~~~--------~~~~v~~~~--~~-~~-~l~~~~d~~i~i~d~~~~~~~~------------  325 (536)
                      .|=.|.+|+++-.. ......        ...-|++-.  |. -+ ++.+++.|+|++-|++.....-            
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            57789999986322 221111        111223322  22 23 4445558999999998532110            


Q ss_pred             ---EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC------------Ce---EEEE
Q 009373          326 ---VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG------------PV---NSLA  387 (536)
Q Consensus       326 ---~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~------------~v---~~l~  387 (536)
                         .+..+-...|..+.|+++|+++++-+. -+|++||+....     .++.+..-|..            .|   ..++
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~-----~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~  336 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA-----KPVETYPVHEYLRSKLCSLYENDAIFDKFECS  336 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC-----CcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence               111123346889999999999988543 579999996553     34444444421            22   3467


Q ss_pred             EcC--CeEEEEeCCCcEEEEECCcc
Q 009373          388 FEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       388 ~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      |++  .+++||+....++++++..+
T Consensus       337 ~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  337 WSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EcCCcceEecccccceEEEecCCCC
Confidence            776  49999999999999997654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.30  E-value=4.3e-10  Score=113.60  Aligned_cols=188  Identities=19%  Similarity=0.215  Sum_probs=147.0

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE------EEEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373          164 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI------RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       164 v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v------~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  237 (536)
                      ..+.-+...++.++.++.+.+||...+..........-..      .-.+++.-++++|+.-+.|.+|++....      
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn------  166 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN------  166 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC------
Confidence            3444567788888899999999998887666654433222      1223666789999999999999986321      


Q ss_pred             cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeE--eeeccccEEEEeecCCEEEEec-CCc
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK--VLRHSDWVYGLAPHDTTVASTS-GSD  312 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~-d~~  312 (536)
                             ....+.+|.+.|.++.+  ++.++++.|+|+++++|++++.+...  .+.|...|..+......+++++ |-+
T Consensus       167 -------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedct  239 (967)
T KOG0974|consen  167 -------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCT  239 (967)
T ss_pred             -------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceE
Confidence                   22268899999999999  99999999999999999999988765  4559999998884444788777 999


Q ss_pred             EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       313 i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      .++|+.. +..+..+.......|..++..++...++|++.||.+++||+....
T Consensus       240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             EEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence            9999655 444446654345589999999999999999999999999987653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=3.4e-11  Score=127.22  Aligned_cols=183  Identities=17%  Similarity=0.295  Sum_probs=136.6

Q ss_pred             eEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEE
Q 009373          202 TIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRV  277 (536)
Q Consensus       202 ~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~i  277 (536)
                      .+.++.  |...+.+||+.||.|++|....+.           ........+. +.|+.+.|  .|+.+..+..||.+.+
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~-----------~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ-----------QVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCC-----------eEEEeeccCc-chhhhhhhcccCCceeeeccCCceee
Confidence            344554  777899999999999999986543           1122222233 77888888  7899999999999999


Q ss_pred             EeCCCceEeEeee-ccccEEEEeecCCEEEEec----CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC
Q 009373          278 WDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE  352 (536)
Q Consensus       278 wd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~  352 (536)
                      |... .+.....+ |......+..-+..+++++    ++.+.+||..-.....-+...|.+.++++++.|..++|++|+.
T Consensus      2278 ~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2278 WQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             cccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence            9987 34444444 7777777765556666654    4789999976543333333579999999999999999999999


Q ss_pred             CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCccc
Q 009373          353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      +|.|++||++..      ...+++..       +. ...++++|+..|.|+||++....
T Consensus      2357 ~G~v~l~D~rqr------ql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQR------QLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             cCcEEEeehHHH------HHHHHhhh-------hh-hhheeeccCcccceEEEEccccc
Confidence            999999999887      44444433       22 35799999999999999998753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.28  E-value=7.5e-10  Score=110.12  Aligned_cols=215  Identities=14%  Similarity=0.113  Sum_probs=138.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeee--eCCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDG--FI  222 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg--~i  222 (536)
                      .+.+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++....  +.+. .....++|+|+.|+ +.+.+|  .|
T Consensus       196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l~~~~s~~g~~~I  274 (433)
T PRK04922        196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRLALTLSRDGNPEI  274 (433)
T ss_pred             ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEEEEEEeCCCCceE
Confidence            45667788889999999999999987743   4699999988865332  2221 22356789998765 455555  58


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CCe--EEEEeCCCceEeEeeeccccE--
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMT--VRVWDRALLKCLKVLRHSDWV--  295 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~v--  295 (536)
                      ++||+.++.              ...+..+.......+|  +++.|+.++. +|.  |.++|+.+++...........  
T Consensus       275 y~~d~~~g~--------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~  340 (433)
T PRK04922        275 YVMDLGSRQ--------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNAR  340 (433)
T ss_pred             EEEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccC
Confidence            889987652              2234445444556777  7777776664 444  666777766543322222222  


Q ss_pred             EEEeecCCEEEEec-C-C--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC---CcEEEEEcccCcccc
Q 009373          296 YGLAPHDTTVASTS-G-S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEA  368 (536)
Q Consensus       296 ~~~~~~~~~l~~~~-d-~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~  368 (536)
                      .+++|+|+.++..+ + +  .|.+||+.+++.. .+.  +........|+|+|++++..+.+   +.+.++++...    
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----  413 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----  413 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence            35669999888764 2 2  5999999888755 332  22234567899999987776653   34777776443    


Q ss_pred             ccceeeeccCCCCCeEEEEEcC
Q 009373          369 NVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                         ....+..+.+.+...+|+|
T Consensus       414 ---~~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        414 ---VRQRLVSADGEVREPAWSP  432 (433)
T ss_pred             ---ceEEcccCCCCCCCCccCC
Confidence               2333444455666666665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.28  E-value=6.2e-10  Score=105.84  Aligned_cols=205  Identities=18%  Similarity=0.166  Sum_probs=149.4

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373          168 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  247 (536)
Q Consensus       168 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  247 (536)
                      |...++|....||.+++|+..+++....+.+.              +..+..++-..|.+.-+..+.          ...
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~--------------~~~s~t~~~~~w~L~~~~s~~----------k~~   58 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPI--------------ASLSGTCTYTKWGLSADYSPM----------KWL   58 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccc--------------hhccCcceeEEEEEEeccchH----------HHH
Confidence            44678999999999999999998877766542              222233344445432211000          000


Q ss_pred             EeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCC
Q 009373          248 RLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG  321 (536)
Q Consensus       248 ~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~  321 (536)
                          ........+-+...++-|...|.|.+|+...++....+.   |.+.|.++.  .+-..|.+++ |..+..|+...+
T Consensus        59 ----~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~  134 (541)
T KOG4547|consen   59 ----SLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK  134 (541)
T ss_pred             ----hHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence                000111112244568889999999999999999988886   889999887  4445666766 899999999999


Q ss_pred             cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-------CC-eE
Q 009373          322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-------FP-WL  393 (536)
Q Consensus       322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-------~~-~l  393 (536)
                      +.++.+. .....+.+++++|||..+++++  +.|++||+.+.      +.+.++.+|.++|++++|-       +. +|
T Consensus       135 ~~~~~~~-~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  135 VIIRIWK-EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             eeeeeec-cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc------eEEEEecCCCcceEEEEEEEeccccccceee
Confidence            9988886 4677889999999999999886  57999999999      7899999999999999993       23 45


Q ss_pred             EEEeCCCcEEEEECCc
Q 009373          394 VSAAGDGKLSLIDVRK  409 (536)
Q Consensus       394 ~s~s~dg~i~vwd~~~  409 (536)
                      .+...+..+.+|-+..
T Consensus       206 ssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  206 SSAAAERGITVWVVEK  221 (541)
T ss_pred             eccccccceeEEEEEc
Confidence            5555677788887765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.27  E-value=4.6e-11  Score=115.79  Aligned_cols=286  Identities=14%  Similarity=0.231  Sum_probs=183.4

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-ce---eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-FS---IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-~~---~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      .+++.++..+|.|+-+|.++.-| +.+-|+... ..   +..+.+-...-+.++  +...+-++......-.+|++... 
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s-  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS-  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC-
Confidence            45677888999999999988776 455666543 22   233322222223343  34445555555556668887543 


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEe-Eeee-ccccEEEEe---ecCC
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCL-KVLR-HSDWVYGLA---PHDT  303 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~-~~~~v~~~~---~~~~  303 (536)
                               ......+.+.+|+..|+.+.|   +++.+++++.|-.+..||+++.... .... -......+.   .++.
T Consensus       102 ---------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen  102 ---------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN  172 (1081)
T ss_pred             ---------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence                     334566778899999999999   5678999999999999999876532 2222 112222333   5677


Q ss_pred             EEEEecCCcEEEEeCCCCc-EEEEEccccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          304 TVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       304 ~l~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      .+++..+..|.+||++.|. ++..++ +|...|+.+.|..- ...+.+++.||+|++||........+     .......
T Consensus       173 vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~-----~~vtt~~  246 (1081)
T KOG0309|consen  173 VLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK-----RTVTTNF  246 (1081)
T ss_pred             hhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc-----eeccccC
Confidence            7777778999999999875 555555 58889999988653 34688999999999999876532211     1122334


Q ss_pred             CeEEEEEcC---C-eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec---------
Q 009373          382 PVNSLAFEF---P-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---------  448 (536)
Q Consensus       382 ~v~~l~~~~---~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------  448 (536)
                      +|..-.+-|   . ++.---.+..+.+++-++....+         .......+...+.||...|..+-+-         
T Consensus       247 piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~---------n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~  317 (1081)
T KOG0309|consen  247 PIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW---------NVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY  317 (1081)
T ss_pred             cceeccccccCceeEeccccCCeeeeeccccchhhhh---------ccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence            555544433   1 22222222244444444322221         1112256677789999888776541         


Q ss_pred             -CC--EEEEecCCCeEEEEeCCch
Q 009373          449 -AD--RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       449 -~~--~l~sg~~Dg~i~vW~~~~~  469 (536)
                       .+  .|+|-+.|..+|+|.+.+.
T Consensus       318 d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  318 DSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             CccceeEEEeecCCceEeeeccHH
Confidence             11  7999999999999999864

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=1.2e-09  Score=108.20  Aligned_cols=217  Identities=15%  Similarity=0.109  Sum_probs=135.4

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeee--eCCCCceEEEEecCCCEEE-EEeCCCcEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLV-AGGTDGFIHC  224 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~-sg~~dg~i~v  224 (536)
                      .+.+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++....  +.+ ......++|||+.|+ +.+.+|...+
T Consensus       188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~I  266 (427)
T PRK02889        188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQI  266 (427)
T ss_pred             ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceE
Confidence            34566788899999999999998877653   3599999998865432  222 223456789998776 5677888777


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeC--CCceEeEeeeccc--cEEE
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDR--ALLKCLKVLRHSD--WVYG  297 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~--~~~~~~~~~~~~~--~v~~  297 (536)
                      |.+....            .....+..+.+......|  |++.|+..+. +|...+|.+  .+++.........  .-..
T Consensus       267 y~~d~~~------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~  334 (427)
T PRK02889        267 YTVNADG------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPR  334 (427)
T ss_pred             EEEECCC------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceE
Confidence            7653211            112334445555566677  7777776554 456666654  4444322221222  1235


Q ss_pred             EeecCCEEEEec-CC---cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-c--EEEEEcccCcccccc
Q 009373          298 LAPHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-A--IHMYEIINDCTEANV  370 (536)
Q Consensus       298 ~~~~~~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~--i~iwd~~~~~~~~~~  370 (536)
                      ++|+|+.++..+ ++   .|.+||+.+++..... .  ........|+|+|+.|+.++.++ .  +.+.++. +      
T Consensus       335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g------  404 (427)
T PRK02889        335 ISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G------  404 (427)
T ss_pred             ECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C------
Confidence            669999988765 32   5999999988754332 2  22346789999999888776554 3  4444542 2      


Q ss_pred             ceeeeccCCCCCeEEEEEcC
Q 009373          371 LLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~  390 (536)
                      .....+..+.+.+...+|+|
T Consensus       405 ~~~~~l~~~~g~~~~p~wsp  424 (427)
T PRK02889        405 RIKQRLSVQGGDVREPSWGP  424 (427)
T ss_pred             CceEEeecCCCCCCCCccCC
Confidence            22333344556666677765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.25  E-value=8.6e-10  Score=95.86  Aligned_cols=237  Identities=14%  Similarity=0.123  Sum_probs=159.7

Q ss_pred             cccEEEEEEec---CCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCc--------eEEEEecCCCEEEEEeCCCcEEEE
Q 009373          158 TEAVLTVFVLA---SAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC--------TIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       158 ~~~V~~v~~~~---~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      +..+..|.|..   +|. .++-+-.+|.|.++..........+.+-.+        -.+.+++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34455555553   334 556667788999998766555555544321        223344778889999999999855


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCC-CceEeEee--eccccEEEEe
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVL--RHSDWVYGLA  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~-~~~~~~~~--~~~~~v~~~~  299 (536)
                      +.....           .......+.|.-+..-..|   +++.+++|+.|+.+..||++ .++.+..-  .|...|.++.
T Consensus       149 ~~t~~~-----------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~  217 (339)
T KOG0280|consen  149 YETEMV-----------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIY  217 (339)
T ss_pred             ecceee-----------eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEe
Confidence            543321           2344467789888888888   77899999999999999998 33444332  2888899987


Q ss_pred             ---ecCCEEEEec-CCcEEEEeCCC-CcEEEEEccccccceEEEEEeCCC--CEEEEEcCCCcEEEEEcccCccccccce
Q 009373          300 ---PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       300 ---~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                         |.+.++++|+ |..|++||.++ ++++..-  .-.+.|..+..+|.-  ..|+++-.+| .+|-+......+ .-..
T Consensus       218 ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e-~~~~  293 (339)
T KOG0280|consen  218 SSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE-FQIV  293 (339)
T ss_pred             cCCCCCceEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc-hhee
Confidence               6678999999 99999999994 6666554  356899999999953  3444444444 777777666432 1123


Q ss_pred             eeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEE-EEECCc
Q 009373          373 VATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLS-LIDVRK  409 (536)
Q Consensus       373 ~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~-vwd~~~  409 (536)
                      ....+.|.+-+..-.|+.  .+|+|++ .|..++ +|-.-+
T Consensus       294 ~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t  334 (339)
T KOG0280|consen  294 LPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT  334 (339)
T ss_pred             eeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence            445567777777777743  4677765 366644 665433

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.24  E-value=1.7e-09  Score=96.60  Aligned_cols=235  Identities=18%  Similarity=0.238  Sum_probs=144.6

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE---eCCEEEEEecCCeEEEE
Q 009373          203 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL---DLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       203 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~---~~~~l~s~s~dg~i~iw  278 (536)
                      ..++++.-..++++..|-.|++|+-...              ....++ .....|++++|   .+..|+.|+. +-|.+|
T Consensus       103 ~~aWhqH~~~fava~nddvVriy~ksst--------------~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW  167 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIYDKSST--------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIW  167 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEeccCCC--------------CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEE
Confidence            3444454456888999999999986442              111222 23567999999   4456777765 568999


Q ss_pred             eCCCc----e--------EeEeee--ccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEE
Q 009373          279 DRALL----K--------CLKVLR--HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR  340 (536)
Q Consensus       279 d~~~~----~--------~~~~~~--~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~  340 (536)
                      .....    .        ....++  ...+|+++.  ++|..+++++  +..|.|||+.++..+.... ...+.++-+.|
T Consensus       168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkw  246 (445)
T KOG2139|consen  168 SDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKW  246 (445)
T ss_pred             EcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEE
Confidence            75421    1        112233  235788887  7889999888  6889999999987665543 35677889999


Q ss_pred             eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCC-C
Q 009373          341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGR-P  416 (536)
Q Consensus       341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~-~  416 (536)
                      +|||.+|++++-|+..++|+....      .....+.-..+.|....|+|   ..|++.+..-.++--.......... .
T Consensus       247 SPdgd~lfaAt~davfrlw~e~q~------wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~  320 (445)
T KOG2139|consen  247 SPDGDVLFAATCDAVFRLWQENQS------WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP  320 (445)
T ss_pred             cCCCCEEEEecccceeeeehhccc------ceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence            999999999999999999965443      12222233455899999987   3555665554443332222111111 1


Q ss_pred             CCCCceeeEEeeCCCe----eeeccccccEEEEEecCCEEEEecCCC
Q 009373          417 TSGKRVSRVIEVEPPQ----RMLHGFECNLLSVDIGADRIVCGGEEG  459 (536)
Q Consensus       417 ~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~l~sg~~Dg  459 (536)
                      ...+.+..+.++.+..    +.+-+.....++++++|.+||+.-..+
T Consensus       321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            1111111111111111    122344556778888888888755433

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.24  E-value=2.4e-10  Score=107.12  Aligned_cols=158  Identities=14%  Similarity=0.121  Sum_probs=114.8

Q ss_pred             ccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373          159 EAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       159 ~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  237 (536)
                      ..|+|+.|-|.+. .++.+-.+|.+.++|.+.      ..+...+.....+++..+.....-+.                
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------~~~~t~p~~~~~k~~~~f~i~t~ksk----------------  277 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------VCGATAPSYQALKDGDQFAILTSKSK----------------  277 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccc------cccCCCCcccccCCCCeeEEeeeecc----------------
Confidence            7899999999654 666677899999998721      11122222233344554443321110                


Q ss_pred             cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CC
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS  311 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  311 (536)
                         ....++..+.--.+.|..++|  |+.+|++.+.||.++|||..+.+.+...+ .-+...|++  |||+++++|+ |.
T Consensus       278 ---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD  354 (636)
T KOG2394|consen  278 ---KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD  354 (636)
T ss_pred             ---ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence               001233444444568999999  88999999999999999999988777766 445566665  9999999999 89


Q ss_pred             cEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373          312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  342 (536)
Q Consensus       312 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~  342 (536)
                      -|.||.+...+.+..-. +|...|+.++|+|
T Consensus       355 LVtVwSf~erRVVARGq-GHkSWVs~VaFDp  384 (636)
T KOG2394|consen  355 LVTVWSFEERRVVARGQ-GHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEEEeccceEEEecc-ccccceeeEeecc
Confidence            99999999999988875 7999999999987

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.22  E-value=8.4e-11  Score=124.34  Aligned_cols=224  Identities=17%  Similarity=0.233  Sum_probs=165.2

Q ss_pred             CccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEE--EEecCCCEEEEEeCCCcEE
Q 009373          147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIR--AVAADKKLLVAGGTDGFIH  223 (536)
Q Consensus       147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~--~~~~~~~~l~sg~~dg~i~  223 (536)
                      ++..-..++.|-..|.++.-+|...+.+||+.||.|++|....++.+..+...+ ..+.  .++..|+.+..+..||.+.
T Consensus      2197 ~~~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2197 SRGASVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred             cccceeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCcee
Confidence            333445666778889999999999999999999999999999888877764322 3343  3457899999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEe---cCCeEEEEeCCCceEeEe--eeccccEEEE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS---WDMTVRVWDRALLKCLKV--LRHSDWVYGL  298 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~--~~~~~~v~~~  298 (536)
                      +|.+.              ..+....+.|.....++.|-+..+++++   .++.+.+||..-......  ..|...++++
T Consensus      2277 l~q~~--------------pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2277 LWQAS--------------PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred             ecccC--------------CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence            99874              2356667789999999999667777764   578999999653322222  2377777777


Q ss_pred             e--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          299 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       299 ~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                      +  |...++++|+ +|.|++||++..+....+..          ++ ...++++|+..|.++||++....      .+.+
T Consensus      2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~------ll~~ 2405 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFG------LLHT 2405 (2439)
T ss_pred             EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccc------hhhc
Confidence            6  8999999999 89999999998887766642          33 56789999999999999998773      2222


Q ss_pred             cc---CCCC--Ce--EEEEEc-CCeEEEEeCCCc
Q 009373          376 WI---PHTG--PV--NSLAFE-FPWLVSAAGDGK  401 (536)
Q Consensus       376 ~~---~h~~--~v--~~l~~~-~~~l~s~s~dg~  401 (536)
                      +.   +|.+  .+  ..+... .++|.+++.||+
T Consensus      2406 ~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2406 FPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred             CchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence            21   1111  11  222222 278889888874

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=4.7e-09  Score=104.58  Aligned_cols=196  Identities=13%  Similarity=0.030  Sum_probs=129.2

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeC---CCcEEEEECCCCceeeeeCCCCce--EEEEecCCCEEE-EEeCCCc--E
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLV-AGGTDGF--I  222 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~---dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~-sg~~dg~--i  222 (536)
                      .+.+..|...|.+.+|+|||+.|+..+.   +..|.+||+.+++... +..+...  ..+++|+|+.|+ +.+.+|.  |
T Consensus       194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I  272 (435)
T PRK05137        194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI  272 (435)
T ss_pred             cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence            4667788899999999999998887764   4689999999886533 2222222  346779998765 5566665  6


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeeeccccEE-
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVY-  296 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~v~-  296 (536)
                      ++||+.++.              ...+..+.+......|  +++.++..+. +|  .|.++|+.+++..........+. 
T Consensus       273 y~~d~~~~~--------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~  338 (435)
T PRK05137        273 YTMDLRSGT--------------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST  338 (435)
T ss_pred             EEEECCCCc--------------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence            667776542              2334445555666777  7787777663 33  68888987665543332333333 


Q ss_pred             -EEeecCCEEEEec-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC------CcEEEEEcccC
Q 009373          297 -GLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED------GAIHMYEIIND  364 (536)
Q Consensus       297 -~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d------g~i~iwd~~~~  364 (536)
                       .++|+|+.++... +   ..|.+||+..+.. ..+..  ...+....|+|+|+.|+..+.+      ..+.++|+...
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence             3569999887765 2   3588889865543 33332  2346788999999988765443      25777777654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=8.3e-11  Score=110.38  Aligned_cols=204  Identities=20%  Similarity=0.247  Sum_probs=149.7

Q ss_pred             eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE
Q 009373          193 IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS  268 (536)
Q Consensus       193 ~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s  268 (536)
                      +..+.+|...|.++.  .+.+.+++++.|.+|++|.++...      .+.....+..++..|..+|.++.|  +..+++ 
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~Eg------D~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~-  800 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEG------DEIGTSACQFTYQAHKKPIHDIGFLADLRSIA-  800 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEecccc------CccccceeeeEhhhccCcccceeeeeccceee-
Confidence            345677888887776  567789999999999999986532      122234578889999999999999  444554 


Q ss_pred             EecCCeEEEEeCCCceEeEeee------ccccEEEEee-cCCEEEEe-c-CCcEEEEeCCCCcEEEEEc----cccccce
Q 009373          269 GSWDMTVRVWDRALLKCLKVLR------HSDWVYGLAP-HDTTVAST-S-GSDVYIWDTNSGCLLTVVN----GAHVGNT  335 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~-~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~----~~~~~~i  335 (536)
                       +.||.|.+||.--++.+....      ..+.|.++.. +...+.++ + ..+|+++|.+.++....++    .+...-+
T Consensus       801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~  879 (1034)
T KOG4190|consen  801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT  879 (1034)
T ss_pred             -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence             558999999987777665433      2344566653 55555555 4 7999999999988766654    2345678


Q ss_pred             EEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE-cCCeEEEEeCCCcEEE-EECCcc
Q 009373          336 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSL-IDVRKL  410 (536)
Q Consensus       336 ~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~v-wd~~~~  410 (536)
                      .+++..+.|+.+++|-.+|+|.+.|.+++      ..+..+.+.......++- +...|+....|.++.| |..-++
T Consensus       880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G------~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldg  950 (1034)
T KOG4190|consen  880 RAIAVADKGNKLAAALSNGCIAILDARNG------KVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDG  950 (1034)
T ss_pred             eEEEeccCcchhhHHhcCCcEEEEecCCC------ceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCC
Confidence            99999999999999999999999999999      556656555544444443 3367888888888888 875543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.19  E-value=1.1e-08  Score=100.77  Aligned_cols=265  Identities=10%  Similarity=0.031  Sum_probs=167.3

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc---------eEE--EEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC---------TIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~---------~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..+++++.+|.+.-+|.++|+.+........         ...  ....++..++.++.+|.+..+|.++++..-    
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W----  144 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW----  144 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcc----
Confidence            66788888899999999999998877643220         010  122356778889999999999998885211    


Q ss_pred             CcccccceEEeeCCccCEE-EEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEE-------EEeecCCEEEEecC
Q 009373          239 GSEKQNTQFRLWEHEGPIT-SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-------GLAPHDTTVASTSG  310 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~-------~~~~~~~~l~~~~d  310 (536)
                               +.... +.+. +....++.++.++.++.+..+|..+|+.+.......+..       -+..++..++...+
T Consensus       145 ---------~~~~~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~  214 (394)
T PRK11138        145 ---------QTKVA-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN  214 (394)
T ss_pred             ---------cccCC-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC
Confidence                     11111 1121 122356778888889999999999999988876332211       11134445555558


Q ss_pred             CcEEEEeCCCCcEEEEEcccccc------ceEEEEEeC--CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          311 SDVYIWDTNSGCLLTVVNGAHVG------NTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       311 ~~i~i~d~~~~~~~~~~~~~~~~------~i~~l~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      +.+..+|..+|+.+.........      ....+..+|  .+..++.++.+|.+..+|..+++      .+-...  .+.
T Consensus       215 g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~------~~W~~~--~~~  286 (394)
T PRK11138        215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ------IVWKRE--YGS  286 (394)
T ss_pred             CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC------EEEeec--CCC
Confidence            99999999999876654311110      011111122  24567777889999999998883      222111  112


Q ss_pred             eEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEE
Q 009373          383 VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVR  462 (536)
Q Consensus       383 v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~  462 (536)
                      ...+...++.|+.++.+|.+..+|..++...+.....                .+  ....+....+.+++.++.||.|.
T Consensus       287 ~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----------------~~--~~~~sp~v~~g~l~v~~~~G~l~  348 (394)
T PRK11138        287 VNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDL----------------LH--RLLTAPVLYNGYLVVGDSEGYLH  348 (394)
T ss_pred             ccCcEEECCEEEEEcCCCeEEEEECCCCcEEEccccc----------------CC--CcccCCEEECCEEEEEeCCCEEE
Confidence            2234556788999999999999999887554432110                00  00111222367888899999999


Q ss_pred             EEeCCchhhHHH
Q 009373          463 IWNFSQAFEIER  474 (536)
Q Consensus       463 vW~~~~~~~~~~  474 (536)
                      +.|..+|+.+.+
T Consensus       349 ~ld~~tG~~~~~  360 (394)
T PRK11138        349 WINREDGRFVAQ  360 (394)
T ss_pred             EEECCCCCEEEE
Confidence            999999876543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=1.6e-10  Score=108.59  Aligned_cols=240  Identities=17%  Similarity=0.194  Sum_probs=160.5

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-------CceeeeeCCCCceEEEEecCCCEEEEEeCCCc
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-------GFSIASSKPLGCTIRAVAADKKLLVAGGTDGF  221 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~  221 (536)
                      ..+..+.||+..|..++--.+.+-+++++.|++|++|.+..       ..+..+++.|..+|.++..-...-..++.||.
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g  805 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG  805 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence            45678889999999998888888999999999999999853       24667788999988877643333344567899


Q ss_pred             EEEEEcccCccceecccCcccccceEEe--eCCccCEEEEEE-eCCEEEEE-ecCCeEEEEeCCCceEeEeee------c
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRL--WEHEGPITSLAL-DLTRIYSG-SWDMTVRVWDRALLKCLKVLR------H  291 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~-~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~------~  291 (536)
                      |++||.--+...          .....-  .+..+.|.++.- +...++.| +...+|+++|.+..+-...++      .
T Consensus       806 iHlWDPFigr~L----------aq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P  875 (1034)
T KOG4190|consen  806 IHLWDPFIGRLL----------AQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP  875 (1034)
T ss_pred             ceeecccccchh----------HhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence            999996443210          000011  122334555544 44445444 789999999999887766665      2


Q ss_pred             cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE-EEcccCccc
Q 009373          292 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM-YEIINDCTE  367 (536)
Q Consensus       292 ~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i-wd~~~~~~~  367 (536)
                      ...+.+++  +.|+.++++- +|.|.+.|.++|+.+..... -......++ .|..+.|+....|.++.+ |...++   
T Consensus       876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldg---  950 (1034)
T KOG4190|consen  876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---  950 (1034)
T ss_pred             chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---
Confidence            23455554  8888888877 89999999999998877642 222233332 355677787778888888 876665   


Q ss_pred             cccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373          368 ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID  406 (536)
Q Consensus       368 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  406 (536)
                         ......++...+..-+.--+..|+++.....+.||.
T Consensus       951 ---imh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  951 ---IMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             ---eeeeccCCCCcchhhhhccCceeEEeccCcEEEEEe
Confidence               233333333333333333345677777777788885

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=2.7e-08  Score=94.27  Aligned_cols=284  Identities=12%  Similarity=0.134  Sum_probs=168.4

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEE-----eC-----CCcEEEEEc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG-----GT-----DGFIHCWRA  227 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-----~~-----dg~i~vwd~  227 (536)
                      ..+++..+++++|+++|.+. +..++|++..++..+.+.......-+-++|.+.+|.+=     ..     .-.+.+|++
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v  112 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV  112 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeee
Confidence            44467788999898877654 67899999998866555555444445566878777652     11     234779999


Q ss_pred             ccCccceecccCc--c----------c--------c--------cceEEeeCCccCEEEEEEeCC----EEE-----EEe
Q 009373          228 VEVLPHLFDISGS--E----------K--------Q--------NTQFRLWEHEGPITSLALDLT----RIY-----SGS  270 (536)
Q Consensus       228 ~~~~~~~~~~~~~--~----------~--------~--------~~~~~~~~h~~~v~~l~~~~~----~l~-----s~s  270 (536)
                      +++... +.+...  .          .        .        .....-.-|...|+.+.+.+.    .++     ..+
T Consensus       113 et~~~~-s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG  191 (566)
T KOG2315|consen  113 ETGVQR-SQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG  191 (566)
T ss_pred             ccceeh-hheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence            884321 100000  0          0        0        000011123344555555221    222     233


Q ss_pred             cCCeEEEEeCCCceEeEeee-----ccccEEEEe--ecCC--EEEEec--C---------CcEEEEeCCCCcEEEEEccc
Q 009373          271 WDMTVRVWDRALLKCLKVLR-----HSDWVYGLA--PHDT--TVASTS--G---------SDVYIWDTNSGCLLTVVNGA  330 (536)
Q Consensus       271 ~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~--~~~~--~l~~~~--d---------~~i~i~d~~~~~~~~~~~~~  330 (536)
                      .-+.|+||...-......+.     ..+.| .+.  ..|.  ++++.+  |         .+++++++........+  .
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~  268 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--L  268 (566)
T ss_pred             CCcEEEEeccccccccchhhhcccccccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--C
Confidence            44567777654222111111     11111 122  2222  222222  3         24888888744444443  3


Q ss_pred             cccceEEEEEeCCCCEEEE--EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEE
Q 009373          331 HVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLS  403 (536)
Q Consensus       331 ~~~~i~~l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~  403 (536)
                      ..++|.++.|+|++.-+++  |-.-..+.|||++..       ++..+  ..++=+++-|+|  ++|+.+|-+   |.|-
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-------~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mE  339 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-------PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDME  339 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-------EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceE
Confidence            6889999999999976554  566788999998765       34333  467778999987  677766654   8999


Q ss_pred             EEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC------CCeEEEEeCCchhhHHH
Q 009373          404 LIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQAFEIER  474 (536)
Q Consensus       404 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~i~vW~~~~~~~~~~  474 (536)
                      |||+.+.+...                   .+......++.++++|.+++|+..      |+.++||++.....-+.
T Consensus       340 vwDv~n~K~i~-------------------~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~  397 (566)
T KOG2315|consen  340 VWDVPNRKLIA-------------------KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK  397 (566)
T ss_pred             EEeccchhhcc-------------------ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence            99998843332                   234455778899999998877764      78899999876544443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2.8e-08  Score=98.48  Aligned_cols=206  Identities=12%  Similarity=0.089  Sum_probs=127.3

Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe---cCCeEEEEeCCCceEeEeeecccc-
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS---WDMTVRVWDRALLKCLKVLRHSDW-  294 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~-  294 (536)
                      .|.++|....              ....+..+...+.+.+|  +++.|+..+   .+..|.+||+.+++.......... 
T Consensus       180 ~l~~~d~dg~--------------~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~  245 (429)
T PRK03629        180 ELRVSDYDGY--------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN  245 (429)
T ss_pred             eEEEEcCCCC--------------CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc
Confidence            6888877543              12334456678888999  777877654   245799999988865443332222 


Q ss_pred             -EEEEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCcEEEE--EcccCcc
Q 009373          295 -VYGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMY--EIINDCT  366 (536)
Q Consensus       295 -v~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iw--d~~~~~~  366 (536)
                       -..++|+|+.|+...  ++  .|++||+.+++.....  .+...+....|+|+|+.|+..+. +|...||  |+.++. 
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-  322 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-  322 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence             245669999887653  34  5999999988765443  24456788999999998876665 4555555  544441 


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  441 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (536)
                            ...+..+........|+|  ++|+..+.+   ..|.+||+.++...             .+.      ......
T Consensus       323 ------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-------------~Lt------~~~~~~  377 (429)
T PRK03629        323 ------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-------------VLT------DTFLDE  377 (429)
T ss_pred             ------eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-------------EeC------CCCCCC
Confidence                  122223334455677876  567665543   35888998764211             000      111122


Q ss_pred             EEEEEecCCEEEEecCCCe---EEEEeCCc
Q 009373          442 LLSVDIGADRIVCGGEEGI---VRIWNFSQ  468 (536)
Q Consensus       442 v~~~~~~~~~l~sg~~Dg~---i~vW~~~~  468 (536)
                      ..++++++.+|+.++.|+.   +.+++++.
T Consensus       378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            3467788888888887765   67777754

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.13  E-value=5.1e-09  Score=93.09  Aligned_cols=196  Identities=14%  Similarity=0.175  Sum_probs=132.7

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC----CceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED----GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ..-..+++++.+.++...|+.|-..|++.-+.+..    ...++....|.+.+.++-  .....+++.+.|..+.---.+
T Consensus        65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e  144 (404)
T KOG1409|consen   65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE  144 (404)
T ss_pred             hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence            34457889999999999999999999999987643    345566677888887765  446688888888766322222


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCC--CceEeEeee-ccccEEEEe--ecCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA--LLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      .+..          . --..+   ...-+++.++-.+.+.|...|.|.+-.+.  .-..+.++. |.+.+.++.  +...
T Consensus       145 ~~~~----------l-g~Y~~---~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~  210 (404)
T KOG1409|consen  145 SGNR----------L-GGYNF---ETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR  210 (404)
T ss_pred             cCCc----------c-cceEe---eccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCc
Confidence            2210          0 00000   01111222222244455555555554432  334444554 888999988  5567


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .++++. |..+.+||+.-++-......+|...|..+...+--+.+++++.||.|.+|++...
T Consensus       211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            788887 8999999998766555555579999999998888889999999999999998653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.13  E-value=6.1e-08  Score=95.41  Aligned_cols=260  Identities=11%  Similarity=0.066  Sum_probs=158.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEe
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  249 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  249 (536)
                      +..++.++.+|.+..+|.++|+.+...........+-...+..++.++.+|.+..+|..+++..- .....   ......
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W-~~~~~---~~~~~~  195 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKW-TVNLD---VPSLTL  195 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEee-eecCC---CCcccc
Confidence            56677888999999999999998887654432111111235677788889999999998886321 11100   000001


Q ss_pred             eCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecccc--------EE----E-EeecCCEEEEecCCcEEEE
Q 009373          250 WEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW--------VY----G-LAPHDTTVASTSGSDVYIW  316 (536)
Q Consensus       250 ~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------v~----~-~~~~~~~l~~~~d~~i~i~  316 (536)
                      .+...++    ..++.++.++.+|.+..+|..+++.........+        ..    + +..++..++++.++.+..+
T Consensus       196 ~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al  271 (394)
T PRK11138        196 RGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL  271 (394)
T ss_pred             cCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence            1111222    2345677788899999999999987766541110        00    1 1134445555558999999


Q ss_pred             eCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEEEEcCCeEEE
Q 009373          317 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLVS  395 (536)
Q Consensus       317 d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s  395 (536)
                      |..+|+.+.....+.   ...+.  ..+..++.++.+|.+..+|..++.      .+-.... ......+....+.+|+.
T Consensus       272 d~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~------~~W~~~~~~~~~~~sp~v~~g~l~v  340 (394)
T PRK11138        272 DLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGV------ELWSQSDLLHRLLTAPVLYNGYLVV  340 (394)
T ss_pred             ECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCc------EEEcccccCCCcccCCEEECCEEEE
Confidence            999998876653211   11222  246678888899999999998873      2221111 01122233345688999


Q ss_pred             EeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeC
Q 009373          396 AAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF  466 (536)
Q Consensus       396 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~  466 (536)
                      ++.||.|.+.|..+++..++...                 .+ ..........++.|+.++.||.|+.++.
T Consensus       341 ~~~~G~l~~ld~~tG~~~~~~~~-----------------~~-~~~~s~P~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        341 GDSEGYLHWINREDGRFVAQQKV-----------------DS-SGFLSEPVVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EeCCCEEEEEECCCCCEEEEEEc-----------------CC-CcceeCCEEECCEEEEEeCCceEEEEeC
Confidence            99999999999988643322110                 00 0111122234668888999999988765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=3.6e-08  Score=98.32  Aligned_cols=207  Identities=11%  Similarity=0.039  Sum_probs=127.9

Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec---CCeEEEEeCCCceEeEeeeccccE
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRHSDWV  295 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~v  295 (536)
                      .|.++|....              ....+..|...+.+..|  +++.|+..+.   +..|.+||+.+++......+.+.+
T Consensus       183 ~l~~~d~dg~--------------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~  248 (435)
T PRK05137        183 RLAIMDQDGA--------------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMT  248 (435)
T ss_pred             EEEEECCCCC--------------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcc
Confidence            6777776443              23445677888999999  7788877663   468999999988764433344444


Q ss_pred             E--EEeecCCEEEEe-c-CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CC--cEEEEEcccCcc
Q 009373          296 Y--GLAPHDTTVAST-S-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCT  366 (536)
Q Consensus       296 ~--~~~~~~~~l~~~-~-d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~  366 (536)
                      .  .++|+|+.++.. + ++  .|.+||+.+++... +. .+........|+|||+.|+..+. +|  .|+++|+..+. 
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-  325 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-  325 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE-cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-
Confidence            3  455899877543 3 44  48888998876544 32 35556677899999998887664 33  57777876542 


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  441 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (536)
                            ...+..+.+.+....|+|  +.|+..+.+   ..|.+||+......                   ....+....
T Consensus       326 ------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-------------------~lt~~~~~~  380 (435)
T PRK05137        326 ------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-------------------ILTSGFLVE  380 (435)
T ss_pred             ------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-------------------eccCCCCCC
Confidence                  222233344566778876  577665543   35788887542110                   001112223


Q ss_pred             EEEEEecCCEEEEecC-C-----CeEEEEeCCch
Q 009373          442 LLSVDIGADRIVCGGE-E-----GIVRIWNFSQA  469 (536)
Q Consensus       442 v~~~~~~~~~l~sg~~-D-----g~i~vW~~~~~  469 (536)
                      ...++++++.|+..+. .     ..+.+.++..+
T Consensus       381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             CCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            3466777776554333 2     35777787654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.11  E-value=1.8e-08  Score=100.41  Aligned_cols=194  Identities=14%  Similarity=0.069  Sum_probs=123.0

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEE-EEeCCC--cEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLV-AGGTDG--FIH  223 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~-sg~~dg--~i~  223 (536)
                      .+.+..+...+.+.+|+|+|++|+.++.+   ..|++||+.+++........ .....+++|+++.|+ +.+.++  .|+
T Consensus       182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~  261 (417)
T TIGR02800       182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY  261 (417)
T ss_pred             CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence            45666777889999999999999887654   47999999988654322211 122356779998765 445444  588


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC-C--eEEEEeCCCceEeEeeeccccEE--
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSDWVY--  296 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~v~--  296 (536)
                      +|++.++.              ...+..+........|  +++.|+..+.. +  .|.++|+.+++......+...+.  
T Consensus       262 ~~d~~~~~--------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~  327 (417)
T TIGR02800       262 VMDLDGKQ--------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCC--------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence            88876652              1223333333445566  77777766543 3  58888887766543332333333  


Q ss_pred             EEeecCCEEEEec-CC---cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC---cEEEEEc
Q 009373          297 GLAPHDTTVASTS-GS---DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AIHMYEI  361 (536)
Q Consensus       297 ~~~~~~~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---~i~iwd~  361 (536)
                      .++++++.++.+. ++   .|.+||+.++.... +..  ........|+|+|+.|+..+.++   .+.+.+.
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~  396 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVST  396 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence            4458899888776 43   68999998865433 221  12234568999999888777654   3444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.10  E-value=5.8e-08  Score=85.95  Aligned_cols=264  Identities=16%  Similarity=0.137  Sum_probs=152.1

Q ss_pred             cccEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceeeeeCCCCceE--EEEecCCC-EEEEEeCCCcEEEEEcccCccc
Q 009373          158 TEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKK-LLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      -+.|.-+.|..|.-+++ ....|+.|.+|++...+-...+......+  .+++|+|+ .|.+...+-.|.||.+.+....
T Consensus        48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            45677788888776555 45678899999998877766665555544  45669995 6677788999999999775421


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe------------------------------------cCCeE
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS------------------------------------WDMTV  275 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s------------------------------------~dg~i  275 (536)
                      .              +.-....+..++|  ++++.+.++                                    ++..+
T Consensus       128 ~--------------~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l  193 (447)
T KOG4497|consen  128 L--------------LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL  193 (447)
T ss_pred             E--------------ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence            1              1111112223333  222222221                                    12233


Q ss_pred             EEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEE----------------------------
Q 009373          276 RVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLL----------------------------  324 (536)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~----------------------------  324 (536)
                      .+||.--.-.+..+...-.+..++  |.+++++.|+ |+.+++.+--+-+..                            
T Consensus       194 aVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~  273 (447)
T KOG4497|consen  194 AVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL  273 (447)
T ss_pred             EEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence            444422111111222222333333  5666666666 666555432211110                            


Q ss_pred             --------------------------------EEEc-----cccccceEEEEEeCCCCEEEEEcCC--CcEEEEEcccCc
Q 009373          325 --------------------------------TVVN-----GAHVGNTKSLARSHTGDFLFTGGED--GAIHMYEIINDC  365 (536)
Q Consensus       325 --------------------------------~~~~-----~~~~~~i~~l~~~~~~~~l~tg~~d--g~i~iwd~~~~~  365 (536)
                                                      ..++     ......+.-++|++|..+++|-.+.  ..+-+||++..+
T Consensus       274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~  353 (447)
T KOG4497|consen  274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK  353 (447)
T ss_pred             ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence                                            0000     0112346778999999998886543  568999998762


Q ss_pred             cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE
Q 009373          366 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL  443 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  443 (536)
                             +...-....+|....|+|  ..|+.+.....+++|..........+                  ..|....-+
T Consensus       354 -------l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP------------------~~GF~i~~l  408 (447)
T KOG4497|consen  354 -------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP------------------KKGFNIQKL  408 (447)
T ss_pred             -------hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC------------------CCCceeeeE
Confidence                   233334567899999998  56777777778999987653222111                  233344445


Q ss_pred             EEEecCCEEEEecCCCe
Q 009373          444 SVDIGADRIVCGGEEGI  460 (536)
Q Consensus       444 ~~~~~~~~l~sg~~Dg~  460 (536)
                      .+..+|+.++-.+.|..
T Consensus       409 ~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  409 QWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             EecCCCcEEEEEcCCce
Confidence            55567778888888864

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.09  E-value=2.9e-09  Score=91.00  Aligned_cols=200  Identities=18%  Similarity=0.210  Sum_probs=130.1

Q ss_pred             cCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccE-------EEEeecCCEEEEecC------CcEEEEeCCC
Q 009373          254 GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV-------YGLAPHDTTVASTSG------SDVYIWDTNS  320 (536)
Q Consensus       254 ~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v-------~~~~~~~~~l~~~~d------~~i~i~d~~~  320 (536)
                      ++-.....-++.++++..||.+.+++.+..   ..+.+.-++       .++...++++.++.-      +..+.|+++.
T Consensus        92 ~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p  168 (319)
T KOG4714|consen   92 DPNDACTMTDNRVCIGYADGSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP  168 (319)
T ss_pred             CCcccccccCCceEecCCCceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccc
Confidence            344455556788999999999999987651   111122211       222245555555442      4456666654


Q ss_pred             CcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEE
Q 009373          321 GCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSA  396 (536)
Q Consensus       321 ~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~  396 (536)
                      .+.+..-.. ....|++++-+|.. +.+++|+.||.+.+||.+...     .++..+..|..+|+.+-|+|   ..|+++
T Consensus       169 ~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----~p~S~l~ahk~~i~eV~FHpk~p~~Lft~  242 (319)
T KOG4714|consen  169 IKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----MPVSLLKAHKAEIWEVHFHPKNPEHLFTC  242 (319)
T ss_pred             ccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEccccc-----chHHHHHHhhhhhhheeccCCCchheeEe
Confidence            433222211 22348999999965 567788999999999999884     46777889999999999975   799999


Q ss_pred             eCCCcEEEEECCcc-cccC-------CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEe
Q 009373          397 AGDGKLSLIDVRKL-LRSG-------RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  465 (536)
Q Consensus       397 s~dg~i~vwd~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~  465 (536)
                      +.||.+-.||..+. ....       ....+..+....++.   ..+......|.+++..+..|++|+.-+.|++++
T Consensus       243 sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~---~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  243 SEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEIT---SLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             cCCCcEEEEcCCCceEEecCccccccccccCCcccceEeee---ccccccceeeeeeeccCceEEeccccceEEEec
Confidence            99999999998742 1110       001111111111111   123444566778888899999999999999875

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.09  E-value=1.7e-08  Score=87.84  Aligned_cols=108  Identities=19%  Similarity=0.314  Sum_probs=82.8

Q ss_pred             CccCEEEEEE--eCCEEEE--EecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec----CCcEEEEeCCCC
Q 009373          252 HEGPITSLAL--DLTRIYS--GSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS----GSDVYIWDTNSG  321 (536)
Q Consensus       252 h~~~v~~l~~--~~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~----d~~i~i~d~~~~  321 (536)
                      ..++|.+++|  +++.|++  |..++.|.+||++ ++.+..+. ...+..+.  |+|++++.++    .|.+.+||+++.
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~  135 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK  135 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            3457999999  5666544  4567899999996 55555554 34445554  9999999876    367999999998


Q ss_pred             cEEEEEccccccceEEEEEeCCCCEEEEEcC------CCcEEEEEcccC
Q 009373          322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGE------DGAIHMYEIIND  364 (536)
Q Consensus       322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~------dg~i~iwd~~~~  364 (536)
                      +.+....  |. .++.++|+|+|++|++++.      |..++||+....
T Consensus       136 ~~i~~~~--~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  136 KKISTFE--HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEeeccc--cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence            8887763  43 4789999999999999874      778999998543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.08  E-value=2.3e-07  Score=87.13  Aligned_cols=294  Identities=11%  Similarity=0.088  Sum_probs=185.8

Q ss_pred             cccEEEEEEecCCCEEEEEeCCC---------------cEEEEECCCCceeeeeCCCCce-----EEEEecCCCEEEEEe
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDS---------------IVRMWHLEDGFSIASSKPLGCT-----IRAVAADKKLLVAGG  217 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg---------------~v~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~l~sg~  217 (536)
                      ...|.-+.|+|.+++|.|=+..+               .+.+||..+|..+..+.....+     +..++.+..+++-- 
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-  149 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-  149 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence            35688899999999999876543               4999999999999888665443     77888777765544 


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEE-----EEecCCeEEEEeCCCceEeEe
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIY-----SGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~-----s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      ....++|+++ ++...         ..+...+.  ...|....+.    +..|+     ....++++++|.+..++.+.+
T Consensus       150 v~~sl~i~e~-t~n~~---------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t  217 (561)
T COG5354         150 VGSSLYIHEI-TDNIE---------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT  217 (561)
T ss_pred             ccCeEEEEec-CCccc---------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee
Confidence            3457889987 33210         11111111  2345555552    22333     246778999999886666554


Q ss_pred             ee---ccccEEEEeecCCEEEEe------------cCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE--Ec
Q 009373          289 LR---HSDWVYGLAPHDTTVAST------------SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GG  351 (536)
Q Consensus       289 ~~---~~~~v~~~~~~~~~l~~~------------~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t--g~  351 (536)
                      ..   ..+--.-..+.|+++..-            +...+++++++........  ...++|...+|.|.++.+++  |.
T Consensus       218 k~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~  295 (561)
T COG5354         218 KNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGY  295 (561)
T ss_pred             eeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecc
Confidence            33   111111122445444321            1246888888744333322  46889999999999887665  45


Q ss_pred             CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEE
Q 009373          352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                      .+-.+.++|++..      ..   +......=+.+.|+|  ++++.++-|   |.|-+||.....               
T Consensus       296 ~pa~~s~~~lr~N------l~---~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf---------------  351 (561)
T COG5354         296 MPASVSVFDLRGN------LR---FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF---------------  351 (561)
T ss_pred             cccceeecccccc------eE---EecCCcccccccccCcccEEEEecCCccccceEEeccCCce---------------
Confidence            7888999999876      11   123344556778877  677777665   789999986521               


Q ss_pred             eeCCCeeeeccccccEEEEEecCCEEEEec------CCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccC
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGADRIVCGG------EEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSK  500 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~------~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (536)
                         .....+.+.......+++++.++.+.-      .|..|+||++......                  ..+.+.|.|.
T Consensus       352 ---~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f------------------el~~~~W~p~  410 (561)
T COG5354         352 ---KVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF------------------ELTNITWDPS  410 (561)
T ss_pred             ---EEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh------------------hhhhccccCC
Confidence               111134555566777888888554432      4888999999865433                  1356778887


Q ss_pred             CCCcceeEeec
Q 009373          501 GGRTDQCSVAA  511 (536)
Q Consensus       501 g~~~~~~~~~~  511 (536)
                      |+...+.|...
T Consensus       411 ~~~~ttsSs~~  421 (561)
T COG5354         411 GQYVTTSSSCP  421 (561)
T ss_pred             cccceeeccCC
Confidence            77777655554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=8.3e-09  Score=91.74  Aligned_cols=254  Identities=11%  Similarity=0.160  Sum_probs=150.9

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC------------ccCEEEEEE----eCCEEE
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH------------EGPITSLAL----DLTRIY  267 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~----~~~~l~  267 (536)
                      ..+...|.+|++|..+|.|.++.-+.....        .......++.|            ...|..+.|    +...++
T Consensus        31 vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   31 VEFDHYGERLATGDKGGRVVLFEREKLYKG--------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             EEeecccceEeecCCCCeEEEeeccccccc--------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            344578999999999999999864332110        01112222233            245777888    345788


Q ss_pred             EEecCCeEEEEeCCCce-----------------------------------EeEeee--ccccEEEEe--ecCCEEEEe
Q 009373          268 SGSWDMTVRVWDRALLK-----------------------------------CLKVLR--HSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       268 s~s~dg~i~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~--~~~~~l~~~  308 (536)
                      ..+.|++|++|.+....                                   +.+.+.  |.-.|++++  .+...++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            88999999999764221                                   111111  455566666  678888998


Q ss_pred             cCCcEEEEeCCCCcEEE---EEcc----ccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccc----------cc
Q 009373          309 SGSDVYIWDTNSGCLLT---VVNG----AHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEA----------NV  370 (536)
Q Consensus       309 ~d~~i~i~d~~~~~~~~---~~~~----~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~----------~~  370 (536)
                      .|=.|.+|++.--..-.   .++.    ....-|++..|+|.. +.++-.+..|+|++-|++....-.          ..
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp  262 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP  262 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence            89999999987543222   2221    123468899999965 577888899999999998542110          00


Q ss_pred             ceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCce--eeEEeeCCCeeeeccccccEEEEE
Q 009373          371 LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV--SRVIEVEPPQRMLHGFECNLLSVD  446 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~  446 (536)
                      ....-+..-...|..+.|+.  +++++-+. -+|++||+....++.....-...  ..+..+.+...+     -.-+.+.
T Consensus       263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~I-----fdKFec~  336 (433)
T KOG1354|consen  263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAI-----FDKFECS  336 (433)
T ss_pred             cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccch-----hheeEEE
Confidence            11111222345778889964  56666543 58999999654322111000000  000000000001     1123455


Q ss_pred             ecCC--EEEEecCCCeEEEEeCCchhh
Q 009373          447 IGAD--RIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       447 ~~~~--~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                      ++|+  +++|||....+++++...|..
T Consensus       337 ~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  337 WSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             EcCCcceEecccccceEEEecCCCCcc
Confidence            6666  999999999999999766543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=6.3e-08  Score=96.69  Aligned_cols=215  Identities=15%  Similarity=0.070  Sum_probs=132.9

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeee--CCCCceEEEEecCCCEEE-EEeCCC--cE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLV-AGGTDG--FI  222 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~-sg~~dg--~i  222 (536)
                      .+.+..|...+....|+|||+.|+..+.+   ..|.+||+.+++.....  .++ .....++|+|+.|+ +.+.+|  .|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~-~~~~~~SpDG~~la~~~~~~g~~~I  269 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL-NGAPAWSPDGSKLAFVLSKDGNPEI  269 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC-cCCeEECCCCCEEEEEEccCCCceE
Confidence            45666778889999999999988876644   36899999988654322  222 22357789998776 444555  57


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeee--ccccE
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLR--HSDWV  295 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~--~~~~v  295 (536)
                      ++||+.++.              ...+..+........|  +++.++..+. +|  .|.++|+.+++......  .....
T Consensus       270 y~~d~~~~~--------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~  335 (430)
T PRK00178        270 YVMDLASRQ--------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR  335 (430)
T ss_pred             EEEECCCCC--------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence            788887653              2223344444555667  6777765553 33  57778887776433222  11223


Q ss_pred             EEEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-C--cEEEEEcccCcccc
Q 009373          296 YGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-G--AIHMYEIINDCTEA  368 (536)
Q Consensus       296 ~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-g--~i~iwd~~~~~~~~  368 (536)
                      ..++|+++.++...  ++  .|.++|+.+++... +...  .......|+|+|+.++..+.+ |  .+.++++...    
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----  408 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----  408 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence            35668999887765  33  58889998886533 3221  122356899999988776543 3  3566666433    


Q ss_pred             ccceeeeccCCCCCeEEEEEcC
Q 009373          369 NVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                         ....+..+.+.+...+|+|
T Consensus       409 ---~~~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        409 ---VRLPLPTAQGEVREPSWSP  427 (430)
T ss_pred             ---ceEECcCCCCCcCCCccCC
Confidence               1223334445566666665

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.07  E-value=1.8e-07  Score=85.39  Aligned_cols=214  Identities=15%  Similarity=0.090  Sum_probs=139.1

Q ss_pred             CCCcEEEEECCCCceeeeeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCcc
Q 009373          178 YDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG  254 (536)
Q Consensus       178 ~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~  254 (536)
                      .+|+|..||..+|+.+.....   ....+....+++..+++++.++.+..||..+++.             .........
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~-------------~W~~~~~~~   67 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV-------------LWRFDLPGP   67 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE-------------EEEEECSSC
T ss_pred             CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE-------------EEEeecccc
Confidence            368999999999999887743   3333333445777888889999999999988752             111111110


Q ss_pred             CEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEee-ecc----c--cEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEE
Q 009373          255 PITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHS----D--WVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTV  326 (536)
Q Consensus       255 ~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~----~--~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~  326 (536)
                      ........++.++.++.|+.+..+|..+++.+... ...    .  ........+..++++. ++.|..+|+.+|+.+..
T Consensus        68 ~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~  147 (238)
T PF13360_consen   68 ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWK  147 (238)
T ss_dssp             GGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred             ccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEE
Confidence            00013447788888889999999999999999884 311    1  1122334566666666 89999999999999887


Q ss_pred             Ecccccc---------ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE-EEEcCCeEEEE
Q 009373          327 VNGAHVG---------NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFPWLVSA  396 (536)
Q Consensus       327 ~~~~~~~---------~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~  396 (536)
                      .......         .+..-....++ .++.++.+|.+.-+|+.++.      .+....  ...+.. ...+...|+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~------~~w~~~--~~~~~~~~~~~~~~l~~~  218 (238)
T PF13360_consen  148 YPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE------KLWSKP--ISGIYSLPSVDGGTLYVT  218 (238)
T ss_dssp             EESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE------EEEEEC--SS-ECECEECCCTEEEEE
T ss_pred             eecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC------EEEEec--CCCccCCceeeCCEEEEE
Confidence            7532211         11222222234 77778888864444998883      222222  223444 55567889988


Q ss_pred             eCCCcEEEEECCccccc
Q 009373          397 AGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       397 s~dg~i~vwd~~~~~~~  413 (536)
                      +.++.|..||+++++..
T Consensus       219 ~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  219 SSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ETTTEEEEEETTTTEEE
T ss_pred             eCCCEEEEEECCCCCEE
Confidence            89999999999987543

...

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.06  E-value=4.5e-09  Score=91.52  Aligned_cols=117  Identities=18%  Similarity=0.305  Sum_probs=82.9

Q ss_pred             EEEEccccccceEEEEEeCCCCEEEE--EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC-
Q 009373          324 LTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-  398 (536)
Q Consensus       324 ~~~~~~~~~~~i~~l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-  398 (536)
                      ...+.....++|.+++|+|+|+.|++  |..++.|.+||++.       ..+..+  +...++.+.|+|  ++|++++. 
T Consensus        51 ~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-------~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~  121 (194)
T PF08662_consen   51 VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-------KKIFSF--GTQPRNTISWSPDGRFLVLAGFG  121 (194)
T ss_pred             cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-------cEeEee--cCCCceEEEECCCCCEEEEEEcc
Confidence            34443335567999999999998654  44678999999963       345544  356788999997  68888774 


Q ss_pred             --CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC------CCeEEEEeCCc
Q 009373          399 --DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE------EGIVRIWNFSQ  468 (536)
Q Consensus       399 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~------Dg~i~vW~~~~  468 (536)
                        .|.|.+||+++......                   .........+++|+|++++++..      |..++||++..
T Consensus       122 n~~G~l~~wd~~~~~~i~~-------------------~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  122 NLNGDLEFWDVRKKKKIST-------------------FEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCcEEEEEECCCCEEeec-------------------cccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence              46799999986433321                   12223455677778888888764      78899999964

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.04  E-value=1.3e-06  Score=82.14  Aligned_cols=263  Identities=14%  Similarity=0.080  Sum_probs=155.4

Q ss_pred             CcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeC----------CCcEEEEEcccCccceecccCcccccceEEe
Q 009373          180 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  249 (536)
Q Consensus       180 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  249 (536)
                      ++|.+.|..+++.+..+.....+-..+++|++.|+++..          +..|.+||..+.+.             ...+
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-------------~~~i   93 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-------------IADI   93 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-------------EeEE
Confidence            899999999999888875433333348999998888766          78999999988642             2222


Q ss_pred             e---------CCccCEEEEEEeCCEEEEEe-c-CCeEEEEeCCCceEeEeeeccccEEEE-eecCCEEEEecCCcEEEEe
Q 009373          250 W---------EHEGPITSLALDLTRIYSGS-W-DMTVRVWDRALLKCLKVLRHSDWVYGL-APHDTTVASTSGSDVYIWD  317 (536)
Q Consensus       250 ~---------~h~~~v~~l~~~~~~l~s~s-~-dg~i~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~d~~i~i~d  317 (536)
                      .         +.......+.-++++++... . +..|.+.|+.+++.+..+.-.+...-+ ..+....+.+.||......
T Consensus        94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~  173 (352)
T TIGR02658        94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVG  173 (352)
T ss_pred             ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEE
Confidence            1         11122344444888888665 3 789999999999999988743322222 2334444445555544433


Q ss_pred             CCC-CcEE-EEEccccc--cce-EEEEEeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeecc-------CCCCCeE
Q 009373          318 TNS-GCLL-TVVNGAHV--GNT-KSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-------PHTGPVN  384 (536)
Q Consensus       318 ~~~-~~~~-~~~~~~~~--~~i-~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~  384 (536)
                      +.+ |+.. ....-.+.  ..+ ..-.|.+ +|.++++..+ |.|.+.|+........ .....+.       -..+.+.
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q  251 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQ  251 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcce
Confidence            322 2211 11000011  000 0003455 8888888776 9999999755432111 1222111       1223334


Q ss_pred             EEEEcC--CeEEEEe----------CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-E
Q 009373          385 SLAFEF--PWLVSAA----------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-R  451 (536)
Q Consensus       385 ~l~~~~--~~l~s~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~  451 (536)
                      -+++++  +.++...          ..+.|.++|..+.+....                  ..-++...-..++++++ +
T Consensus       252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~------------------i~vG~~~~~iavS~Dgkp~  313 (352)
T TIGR02658       252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK------------------IELGHEIDSINVSQDAKPL  313 (352)
T ss_pred             eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE------------------EeCCCceeeEEECCCCCeE
Confidence            488874  5666532          125799999887533322                  12244444455666667 6


Q ss_pred             EEEec-CCCeEEEEeCCchhhHHHH
Q 009373          452 IVCGG-EEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       452 l~sg~-~Dg~i~vW~~~~~~~~~~~  475 (536)
                      |++.. .++.|.+.|..+++.+.+.
T Consensus       314 lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       314 LYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEeCCCCCcEEEEECcCCeEEeee
Confidence            65444 6889999999999887765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.02  E-value=6.1e-08  Score=96.52  Aligned_cols=207  Identities=14%  Similarity=0.114  Sum_probs=124.6

Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeecccc
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDW  294 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~  294 (536)
                      ..|.+||....              ....+..+...+.+.+|  +++.|+..+.+   ..|.+||+.+++........+.
T Consensus       184 ~~l~i~D~~g~--------------~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~  249 (433)
T PRK04922        184 YALQVADSDGY--------------NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI  249 (433)
T ss_pred             EEEEEECCCCC--------------CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC
Confidence            35888887433              23345566778888888  77888877643   4699999988776443333332


Q ss_pred             E--EEEeecCCEEEEe-c-CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCc--EEEEEcccCc
Q 009373          295 V--YGLAPHDTTVAST-S-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDC  365 (536)
Q Consensus       295 v--~~~~~~~~~l~~~-~-d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~--i~iwd~~~~~  365 (536)
                      .  ..++|+|+.++.. + ++  .|++||+.+++... +. .+.......+|+|+|+.|+.++. +|.  |+++|+.++.
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            2  3456899877543 3 43  59999999887543 32 34445567899999998877654 555  5555655542


Q ss_pred             cccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC---cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          366 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG---KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                             ...+..+.......+|+|  ++|+..+.++   .|.+||+.++... .                  ...+...
T Consensus       328 -------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~------------------Lt~~~~~  381 (433)
T PRK04922        328 -------AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T------------------LTPGSLD  381 (433)
T ss_pred             -------eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E------------------CCCCCCC
Confidence                   111112223344678875  6776655433   5999998764211 0                  0111112


Q ss_pred             cEEEEEecCCEEEEecC---CCeEEEEeCCc
Q 009373          441 NLLSVDIGADRIVCGGE---EGIVRIWNFSQ  468 (536)
Q Consensus       441 ~v~~~~~~~~~l~sg~~---Dg~i~vW~~~~  468 (536)
                      .-.++++++++++..+.   .+.|.++++..
T Consensus       382 ~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        382 ESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             CCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence            22366777776655444   34577777754

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.99  E-value=1.7e-07  Score=93.40  Aligned_cols=214  Identities=14%  Similarity=0.081  Sum_probs=129.6

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEE-EeCCCc--EE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYD-S--IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVA-GGTDGF--IH  223 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~d-g--~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s-g~~dg~--i~  223 (536)
                      +.+..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++...  .+.+.. .-..++|+|+.|+. .+.+|.  |+
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~-~~~~wSPDG~~La~~~~~~g~~~Iy  289 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN-GAPRFSPDGKKLALVLSKDGQPEIY  289 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc-CCeeECCCCCEEEEEEeCCCCeEEE
Confidence            4556667788899999999988876543 3  58889998876432  222222 23567899997764 566665  66


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeeecccc--EE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDW--VY  296 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~--v~  296 (536)
                      ++|+.++.              ...+..+.......+|  +++.++..+. ++  .|.++|+.+++..........  -.
T Consensus       290 ~~dl~tg~--------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~  355 (448)
T PRK04792        290 VVDIATKA--------------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG  355 (448)
T ss_pred             EEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence            77776542              2233344445566677  6777665543 33  466678877765432212111  23


Q ss_pred             EEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCc--EEEEEcccCccccc
Q 009373          297 GLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEAN  369 (536)
Q Consensus       297 ~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~  369 (536)
                      +++|+|+.++..+  ++  .|.++|+.+++... +....  ......|+|+|+.|+..+. +|.  +.+++....     
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-----  427 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-----  427 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-----
Confidence            5669999887765  33  46668888876533 32211  1224579999998776554 343  666665332     


Q ss_pred             cceeeeccCCCCCeEEEEEcC
Q 009373          370 VLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~  390 (536)
                        ....+..+.+.+...+|+|
T Consensus       428 --~~~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        428 --FKARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             --ceEECcCCCCCcCCCccCC
Confidence              3333444555666677765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.98  E-value=4.9e-06  Score=80.19  Aligned_cols=273  Identities=14%  Similarity=0.167  Sum_probs=159.9

Q ss_pred             EEEEeCC----CcEEEEEC--CCCce--eeee-CCCCceEEEEecCCCEEEEEeC----CCcEEEEEcccCccceecccC
Q 009373          173 LFTSGYD----SIVRMWHL--EDGFS--IASS-KPLGCTIRAVAADKKLLVAGGT----DGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       173 l~sgs~d----g~v~iwd~--~~~~~--~~~~-~~~~~~v~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      ++.|++.    +.|.+|++  ++++.  +... ......-+++++++++|++...    +|.|..|++....        
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~--------   73 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT--------   73 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT--------
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc--------
Confidence            4566666    68888887  44432  2222 3344455677899999999877    5789999876531        


Q ss_pred             cccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCC-ceEeEe---eec-----------cccEEEE--e
Q 009373          240 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LKCLKV---LRH-----------SDWVYGL--A  299 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~-~~~~~~---~~~-----------~~~v~~~--~  299 (536)
                       .....+............+++  ++++|+++. .+|+|.++++.. +.....   +.+           .....++  .
T Consensus        74 -g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~  152 (345)
T PF10282_consen   74 -GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS  152 (345)
T ss_dssp             -TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred             -ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence             011222233223344556777  677777776 589999999986 433322   211           1223344  4


Q ss_pred             ecCCEEEEec--CCcEEEEeCCCCc--E--EEEEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCc-cccccc
Q 009373          300 PHDTTVASTS--GSDVYIWDTNSGC--L--LTVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDC-TEANVL  371 (536)
Q Consensus       300 ~~~~~l~~~~--d~~i~i~d~~~~~--~--~~~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~-~~~~~~  371 (536)
                      |+++++++..  ...|.+|++....  .  ...+........+.+.|+|+++++.+. -.++.|.+|++.... ......
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~  232 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQ  232 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEE
Confidence            8899888876  4679999997754  3  223333456678999999999987655 457889999998321 111111


Q ss_pred             eeeeccC---CCCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE
Q 009373          372 LVATWIP---HTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  445 (536)
Q Consensus       372 ~~~~~~~---h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  445 (536)
                      .+..+..   .......|+++|  ++|+++. .++.|.+|++....        .....+...     ...+....-+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--------g~l~~~~~~-----~~~G~~Pr~~~~  299 (345)
T PF10282_consen  233 TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT--------GTLTLVQTV-----PTGGKFPRHFAF  299 (345)
T ss_dssp             EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT--------TTEEEEEEE-----EESSSSEEEEEE
T ss_pred             EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC--------CceEEEEEE-----eCCCCCccEEEE
Confidence            1222211   122577888875  6666655 56789999994310        011111100     012333445666


Q ss_pred             EecCCEEE-EecCCCeEEEEeCC
Q 009373          446 DIGADRIV-CGGEEGIVRIWNFS  467 (536)
Q Consensus       446 ~~~~~~l~-sg~~Dg~i~vW~~~  467 (536)
                      ++++++|+ +...++.|.+|+++
T Consensus       300 s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  300 SPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEE
T ss_pred             eCCCCEEEEEecCCCeEEEEEEe
Confidence            77888665 45578899999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.97  E-value=6.3e-08  Score=92.49  Aligned_cols=179  Identities=13%  Similarity=0.235  Sum_probs=140.8

Q ss_pred             CEEEEEecCCeEEEEeCCCceEeEeee----ccccEEE----Ee------------------ecCCEEEEec-CCcEEEE
Q 009373          264 TRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYG----LA------------------PHDTTVASTS-GSDVYIW  316 (536)
Q Consensus       264 ~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~----~~------------------~~~~~l~~~~-d~~i~i~  316 (536)
                      .+++..+.||.+++||...++....+.    ..+..++    +.                  .+...++-|. .|.|.+|
T Consensus         6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y   85 (541)
T KOG4547|consen    6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY   85 (541)
T ss_pred             heEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence            578899999999999999988877765    1121111    11                  1233566666 7999999


Q ss_pred             eCCCCcEEEEEc-cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC--eE
Q 009373          317 DTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP--WL  393 (536)
Q Consensus       317 d~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l  393 (536)
                      ++..|+....+. ..|.+.|.++.++.+-..|.+++.|+.+..|+....      ..+..+......+.+++.+|+  .+
T Consensus        86 s~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~------~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   86 SVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK------VIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc------eeeeeeccCCCccceEEEcCCCCEE
Confidence            999999988887 579999999999999899999999999999999888      678888888889999999886  77


Q ss_pred             EEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec-------CC-EEEEecCCCeEEEEe
Q 009373          394 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-------AD-RIVCGGEEGIVRIWN  465 (536)
Q Consensus       394 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~l~sg~~Dg~i~vW~  465 (536)
                      ++++  +.|++||+++                   .+....+.||...|.+++|.       |. .|.+...+..+.+|-
T Consensus       160 ~~as--~~ik~~~~~~-------------------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  160 LTAS--RQIKVLDIET-------------------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             Eecc--ceEEEEEccC-------------------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            7665  5799999998                   44556788899888887763       23 455666677788888


Q ss_pred             CCch
Q 009373          466 FSQA  469 (536)
Q Consensus       466 ~~~~  469 (536)
                      +...
T Consensus       219 v~~~  222 (541)
T KOG4547|consen  219 VEKE  222 (541)
T ss_pred             EEcc
Confidence            7763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.96  E-value=4.3e-07  Score=82.85  Aligned_cols=216  Identities=16%  Similarity=0.144  Sum_probs=134.8

Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEE-
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-  296 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~-  296 (536)
                      +|+|..||..+++..           -...+..-.....+... +++.+++++.++.+..||..+|+.+..+.....+. 
T Consensus         2 ~g~l~~~d~~tG~~~-----------W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~   70 (238)
T PF13360_consen    2 DGTLSALDPRTGKEL-----------WSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG   70 (238)
T ss_dssp             TSEEEEEETTTTEEE-----------EEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS
T ss_pred             CCEEEEEECCCCCEE-----------EEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc
Confidence            577888888766411           01111111222332234 88889999999999999999999988877333221 


Q ss_pred             -EEeecCCEEEEecCCcEEEEeCCCCcEEEEE-cccc--ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373          297 -GLAPHDTTVASTSGSDVYIWDTNSGCLLTVV-NGAH--VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       297 -~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~-~~~~--~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                       .+..++..++...++.++.+|..+|+.+... ....  ............++.++++..++.|..+|++++.      .
T Consensus        71 ~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~------~  144 (238)
T PF13360_consen   71 APVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK------L  144 (238)
T ss_dssp             GEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTE------E
T ss_pred             eeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCc------E
Confidence             2335555555666889999999999998874 3211  0112222233347888888889999999999983      3


Q ss_pred             eeeccCCCCC-----------eEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373          373 VATWIPHTGP-----------VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  441 (536)
Q Consensus       373 ~~~~~~h~~~-----------v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (536)
                      +.........           ...+.+....++.++.++.+.-+|+.++...+...                     ...
T Consensus       145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~---------------------~~~  203 (238)
T PF13360_consen  145 LWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP---------------------ISG  203 (238)
T ss_dssp             EEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC---------------------SS-
T ss_pred             EEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec---------------------CCC
Confidence            3333322211           13334444688888888864334998864332110                     011


Q ss_pred             EEE-EEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          442 LLS-VDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       442 v~~-~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ... ....++.|+.++.|+.|..||+.+|+.+
T Consensus       204 ~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  204 IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             ccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            222 5567778888879999999999998754

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.96  E-value=1.9e-06  Score=81.00  Aligned_cols=224  Identities=11%  Similarity=0.035  Sum_probs=136.5

Q ss_pred             EecCCCEEEEEeC----------CCcEEEEECCCCceeeeeCCCC---------ceEEEEecCCCEEEEEe-C-CCcEEE
Q 009373          166 VLASAKLLFTSGY----------DSIVRMWHLEDGFSIASSKPLG---------CTIRAVAADKKLLVAGG-T-DGFIHC  224 (536)
Q Consensus       166 ~~~~~~~l~sgs~----------dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~l~sg~-~-dg~i~v  224 (536)
                      ++||++.|+.+..          +..|.+||+.+++.+..+....         ....++++||++|++.. . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8999998777655          7899999999999998875322         23678889999998776 3 689999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCC-ceE-eEe--eecc-------c
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-LKC-LKV--LRHS-------D  293 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~-~~~-~~~--~~~~-------~  293 (536)
                      .|+.+++.             +..+.- .+...-+......+.+.+.||......+.+ ++. ...  +-+.       .
T Consensus       133 vD~~~~kv-------------v~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~r  198 (352)
T TIGR02658       133 VDLEGKAF-------------VRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINH  198 (352)
T ss_pred             EECCCCcE-------------EEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccC
Confidence            99987642             111111 111111111111122223333333322211 110 000  0011       1


Q ss_pred             cEEEEe-ecCCEEEEecCCcEEEEeCCCC-----cEEEEEccc------cccceEEEEEeCCCCEEEEEc----------
Q 009373          294 WVYGLA-PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGA------HVGNTKSLARSHTGDFLFTGG----------  351 (536)
Q Consensus       294 ~v~~~~-~~~~~l~~~~d~~i~i~d~~~~-----~~~~~~~~~------~~~~i~~l~~~~~~~~l~tg~----------  351 (536)
                      +  .+. .+++.++.+..|+|.+.|+...     +....+..+      ..+.+.-++++|+++.+++..          
T Consensus       199 P--~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~  276 (352)
T TIGR02658       199 P--AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT  276 (352)
T ss_pred             C--ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence            1  223 3788888888899999996443     333332111      233445599999999888743          


Q ss_pred             CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-eEEEEe-CCCcEEEEECCcccc
Q 009373          352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLR  412 (536)
Q Consensus       352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~  412 (536)
                      ..+.|.++|..+.      +.+..+.. ...+..+++++  + +|++.. .++.|.++|..+.+.
T Consensus       277 ~~~~V~ViD~~t~------kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       277 ASRFLFVVDAKTG------KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             CCCEEEEEECCCC------eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            1247999999888      44444432 44788999986  4 666665 578899999988543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.96  E-value=2.7e-08  Score=86.76  Aligned_cols=190  Identities=19%  Similarity=0.201  Sum_probs=128.7

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      -.++.|++.+.-++++..+|.+.+-+......  ++..++|.-.+....   .+.+++++|+.||.+..||++-..    
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~----  199 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK----  199 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc----
Confidence            35778899899999999999998666554433  346778877665444   567899999999999999997332    


Q ss_pred             cccCcccccceEE-eeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCC-CceEeEeeeccccEEEEeec----CCEEE
Q 009373          236 DISGSEKQNTQFR-LWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVLRHSDWVYGLAPH----DTTVA  306 (536)
Q Consensus       236 ~~~~~~~~~~~~~-~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~----~~~l~  306 (536)
                              ..+.. ..-|...|.+|.-   .+.++++|+.|-.|++||.+ -++++..-...+.|..+...    ..+++
T Consensus       200 --------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~  271 (339)
T KOG0280|consen  200 --------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA  271 (339)
T ss_pred             --------ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHH
Confidence                    12222 4468889999988   45699999999999999998 45566555566788887722    33455


Q ss_pred             EecCCcEEEEeCCCCcE----EEEEccccccceEEEEEeCCCCEEEEEc-CCCcEE-EEEcc
Q 009373          307 STSGSDVYIWDTNSGCL----LTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIH-MYEII  362 (536)
Q Consensus       307 ~~~d~~i~i~d~~~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~-iwd~~  362 (536)
                      ++--+..+|-+...+..    .......|.+-++.-.|......|+|++ .|..++ +|-.-
T Consensus       272 ~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~  333 (339)
T KOG0280|consen  272 ACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI  333 (339)
T ss_pred             HHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence            55555566666554421    2222235777777777755556788865 355544 55433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=6.8e-07  Score=84.82  Aligned_cols=306  Identities=13%  Similarity=0.069  Sum_probs=185.6

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeC-----------CCcEEEEEcccC
Q 009373          162 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT-----------DGFIHCWRAVEV  230 (536)
Q Consensus       162 ~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~  230 (536)
                      +-+.|||-|.||+|--.-| |.+|--++-..++.+.........++|..++|+|-+.           ...+.|||+.+|
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG  292 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG  292 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence            4577999999999987655 7899877777777777777888899999999998653           256999999998


Q ss_pred             ccceecccCcccccceEEeeCCc--cCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHE--GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l  305 (536)
                      ...          .....+.+..  -++..-++|+++++--.. .+|.||+..+...+-.-. ....|..++  |.+.+|
T Consensus       293 ~lk----------rsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll  361 (698)
T KOG2314|consen  293 LLK----------RSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL  361 (698)
T ss_pred             chh----------cceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence            521          1111111111  122222337777766555 678999877644332221 233444444  777777


Q ss_pred             EEec---C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc----------CCCcEEEEEcccCccccc
Q 009373          306 ASTS---G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG----------EDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       306 ~~~~---d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~  369 (536)
                      +--.   +   ..+.+-.+.+++.+++..- +.-.=..+.|-.+|.+|+.--          .-..+.|+.++....   
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---  437 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---  437 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---
Confidence            7654   1   3477778888777776542 333333466777888876532          122366677666532   


Q ss_pred             cceeeeccCCCCCeEEEEEcC--CeEEEEeC---CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE
Q 009373          370 VLLVATWIPHTGPVNSLAFEF--PWLVSAAG---DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS  444 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  444 (536)
                        ++... .-...|...+|.|  +.+++-+.   ..++.+|.+++....               ......+.....+-..
T Consensus       438 --pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~---------------~~lVk~~dk~~~N~vf  499 (698)
T KOG2314|consen  438 --PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK---------------PSLVKELDKKFANTVF  499 (698)
T ss_pred             --Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc---------------hhhhhhhcccccceEE
Confidence              22211 2356788889977  44443333   357889988752111               1111223333455567


Q ss_pred             EEecCCEEEE---ecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373          445 VDIGADRIVC---GGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       445 ~~~~~~~l~s---g~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      ++|.|++++.   +|..|.+.++|.+-......-..          .+-.-..+.|.|.|+.+.+|+.--
T Consensus       500 wsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~----------eh~~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  500 WSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP----------EHFAATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             EcCCCcEEEEEEecccccceEEEecchhhhhhccCc----------cccccccceECCCCCEEEEeeehh
Confidence            7888886654   44578999999885221111000          112235799999999999986533

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.94  E-value=2e-07  Score=80.31  Aligned_cols=193  Identities=12%  Similarity=0.047  Sum_probs=128.7

Q ss_pred             EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEE---EEeCCEEEEEecCCeEEEEeCCC
Q 009373          206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL---ALDLTRIYSGSWDMTVRVWDRAL  282 (536)
Q Consensus       206 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l---~~~~~~l~s~s~dg~i~iwd~~~  282 (536)
                      +.-.-.+|+.|+..|...+|...+...            .......|...|+-+   +-..-.+..++.|.++++.++.-
T Consensus        80 ~~~kc~~la~gG~~g~fd~~~~~tn~~------------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~  147 (344)
T KOG4532|consen   80 FINKCVTLADGGASGQFDLFACNTNDG------------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG  147 (344)
T ss_pred             hhccccEEEeccccceeeeecccCccc------------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence            334456899999999999999876532            222222333333222   22334577788999999998865


Q ss_pred             ceEeEeee-ccccEEE--EeecCCEEEEecC-CcEEEEeCCCC-c-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373          283 LKCLKVLR-HSDWVYG--LAPHDTTVASTSG-SDVYIWDTNSG-C-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  356 (536)
Q Consensus       283 ~~~~~~~~-~~~~v~~--~~~~~~~l~~~~d-~~i~i~d~~~~-~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i  356 (536)
                      +....... ..-.+.+  ++++++++++.+| ..|..|.+... + .+..........-.+..|+.....+|++..||++
T Consensus       148 ~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~  227 (344)
T KOG4532|consen  148 DSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC  227 (344)
T ss_pred             CcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE
Confidence            43322222 1112444  4489999999885 77888887653 2 2232222344556678899999999999999999


Q ss_pred             EEEEcccCccccccceeeeccCCCCCeEEEEEcC----CeEEEEeCCCcEEEEECCccc
Q 009373          357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      .|||++....+.. ....+-..|.+.+..+.|++    ++|+..-.-+.+.|-|+++..
T Consensus       228 ~I~DVR~~~tpm~-~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~  285 (344)
T KOG4532|consen  228 AIYDVRNMATPMA-EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV  285 (344)
T ss_pred             EEEEecccccchh-hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence            9999998753221 12233345899999999985    577777777899999999853

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.90  E-value=5.6e-07  Score=89.72  Aligned_cols=154  Identities=19%  Similarity=0.186  Sum_probs=100.9

Q ss_pred             EEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeeccccEE--EEeecCCEEEEe-c-C--CcEEE
Q 009373          247 FRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVAST-S-G--SDVYI  315 (536)
Q Consensus       247 ~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~-d--~~i~i  315 (536)
                      ..+..+...+.+..|  ++++|+.++.+   ..|++||+.+++......+...+.  .++|+++.|+.. . +  ..|++
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            334456667888888  77888876644   479999999886554433333333  445888877643 3 3  35999


Q ss_pred             EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CC--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--  390 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--  390 (536)
                      ||+.++......  .+........|+|+|+.|+..+. ++  .|+++|+.++.       ...+..+...+....|+|  
T Consensus       263 ~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-------~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       263 MDLDGKQLTRLT--NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-------VRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             EECCCCCEEECC--CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-------EEEeecCCCCccCeEECCCC
Confidence            999887654332  24444556789999998876554 34  47777766552       223333455667778876  


Q ss_pred             CeEEEEeCCC---cEEEEECCc
Q 009373          391 PWLVSAAGDG---KLSLIDVRK  409 (536)
Q Consensus       391 ~~l~s~s~dg---~i~vwd~~~  409 (536)
                      .+++.++.++   .|.+||+.+
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~  355 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDG  355 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCC
Confidence            6777777765   788888876

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=5.8e-07  Score=89.25  Aligned_cols=156  Identities=21%  Similarity=0.158  Sum_probs=96.2

Q ss_pred             EeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeeccccE--EEEeecCCEEEE-ec-CCc--EEEE
Q 009373          248 RLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAS-TS-GSD--VYIW  316 (536)
Q Consensus       248 ~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~-~~-d~~--i~i~  316 (536)
                      .+..+...+.+.+|  +++.|+..+.+   ..|.+||+.+++........+.+  ..++|+++.++. .+ ++.  |.++
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            34467778888888  77888776643   45999999988765433333333  345589988764 34 565  4445


Q ss_pred             eCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeE
Q 009373          317 DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWL  393 (536)
Q Consensus       317 d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l  393 (536)
                      |+..+. ...+. .+........|+|||+.|+..+. +|...+|.+.....  ....+ ++.+  ......+|+|  ++|
T Consensus       270 d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~l-t~~g--~~~~~~~~SpDG~~I  342 (427)
T PRK02889        270 NADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG--AAQRV-TFTG--SYNTSPRISPDGKLL  342 (427)
T ss_pred             ECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC--ceEEE-ecCC--CCcCceEECCCCCEE
Confidence            665554 34443 24455667889999998776554 56777776643211  11111 1222  2334567775  677


Q ss_pred             EEEeCCC---cEEEEECCcc
Q 009373          394 VSAAGDG---KLSLIDVRKL  410 (536)
Q Consensus       394 ~s~s~dg---~i~vwd~~~~  410 (536)
                      +..+.++   .|.+||+.++
T Consensus       343 a~~s~~~g~~~I~v~d~~~g  362 (427)
T PRK02889        343 AYISRVGGAFKLYVQDLATG  362 (427)
T ss_pred             EEEEccCCcEEEEEEECCCC
Confidence            7766554   6999998764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.88  E-value=2.5e-06  Score=84.25  Aligned_cols=115  Identities=17%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeC----------CCcEEEEECCcccccC
Q 009373          346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAG----------DGKLSLIDVRKLLRSG  414 (536)
Q Consensus       346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~----------dg~i~vwd~~~~~~~~  414 (536)
                      +++.|...|+|.++|+.++      .....+..|.+.|.++.|-+ ..|++.+.          -+.+.|=|++++....
T Consensus       439 LvAvGT~sGTV~vvdvst~------~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~  512 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTN------AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR  512 (1062)
T ss_pred             eEEeecCCceEEEEEecch------hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc
Confidence            6889999999999999998      67778889999999999976 44555443          2456778888764332


Q ss_pred             CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhh
Q 009373          415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALR  480 (536)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~  480 (536)
                      .....              .-.........++..++||+..-.|.-+.+||+.+-..+.....+++
T Consensus       513 fR~l~--------------~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P  564 (1062)
T KOG1912|consen  513 FRGLQ--------------KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALP  564 (1062)
T ss_pred             cccCC--------------CCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCC
Confidence            11000              00112234455666788999999999999999988877776665555

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=4.2e-07  Score=88.68  Aligned_cols=213  Identities=15%  Similarity=0.144  Sum_probs=130.8

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---------------eeeeeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---------------SIASSKPLGCTIRAVA--ADKKLLVAGGTDG  220 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---------------~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg  220 (536)
                      .....|+.|+....++|.|+.||.++|-.+.+..               .-+++.+|...|.-+.  .+.+.|-+...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4557899999999999999999999999886532               1234678888876665  5567899999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEE--------EEeCC---------
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR--------VWDRA---------  281 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~--------iwd~~---------  281 (536)
                      .|.||-+-.+...           ....-....+.|.+++|  +|..++....||.|.        ||.-+         
T Consensus        94 lIiVWmlykgsW~-----------EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv  162 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWC-----------EEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHV  162 (1189)
T ss_pred             eEEEEeeecccHH-----------HHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccce
Confidence            9999988655310           11111123445666666  555555555555443        44211         


Q ss_pred             --------------CceEeE-----------------eee-----ccccEEEE----------eecCCEEEEec-CCcEE
Q 009373          282 --------------LLKCLK-----------------VLR-----HSDWVYGL----------APHDTTVASTS-GSDVY  314 (536)
Q Consensus       282 --------------~~~~~~-----------------~~~-----~~~~v~~~----------~~~~~~l~~~~-d~~i~  314 (536)
                                    .+++..                 ...     .+..+..+          .|+...++.+. +|.+.
T Consensus       163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q  242 (1189)
T KOG2041|consen  163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ  242 (1189)
T ss_pred             eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence                          011000                 000     00001111          13455666666 57666


Q ss_pred             EEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC---------cEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373          315 IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------AIHMYEIINDCTEANVLLVATWIPHTGPVNS  385 (536)
Q Consensus       315 i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  385 (536)
                      +-.-.+......+.  ..-.+....|+++|..|++++.+.         .|.+|..-.       ..+.+++.....|++
T Consensus       243 iMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-------~i~gtlkvpg~~It~  313 (1189)
T KOG2041|consen  243 IMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-------HIVGTLKVPGSCITG  313 (1189)
T ss_pred             hhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-------hheEEEecCCceeee
Confidence            65444333333332  335788899999999999988653         455555332       356777777888999


Q ss_pred             EEEcC
Q 009373          386 LAFEF  390 (536)
Q Consensus       386 l~~~~  390 (536)
                      ++|.+
T Consensus       314 lsWEg  318 (1189)
T KOG2041|consen  314 LSWEG  318 (1189)
T ss_pred             eEEcC
Confidence            99965

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.84  E-value=3.4e-08  Score=98.76  Aligned_cols=179  Identities=18%  Similarity=0.271  Sum_probs=134.8

Q ss_pred             eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEE
Q 009373          262 DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLA  339 (536)
Q Consensus       262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~  339 (536)
                      ++..++.|+....+..+|+++.+..+... ..+.|.-+..+++++.+|. .|+|.+-|.++.+.+.++. .|.+.|..+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aHs~siSDfD  224 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-AHSGSISDFD  224 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee-ccccceeeee
Confidence            66778888888899999999998888777 4446888889999999999 7999999999999999996 6999998765


Q ss_pred             EeCCCCEEEEEcC---------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEEC
Q 009373          340 RSHTGDFLFTGGE---------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       340 ~~~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~  407 (536)
                      .  .|+.|++++.         |.-|+|||++..      +.+..+.-+.++ .-+.|.|   ..+++++..|...+-|.
T Consensus       225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm------ral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMM------RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             c--cCCeEEEeecccccccccccchhhhhhhhhh------hccCCcccccCc-hhhhhcccccceEEEEecccceeeccc
Confidence            5  5899999886         445899999988      333333334433 4566776   68999999999999985


Q ss_pred             CcccccCCCCCCCceeeEEeeCCCeeeec--cccccEEEEEecCCEEEEecCCCeEEEEe
Q 009373          408 RKLLRSGRPTSGKRVSRVIEVEPPQRMLH--GFECNLLSVDIGADRIVCGGEEGIVRIWN  465 (536)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~  465 (536)
                      .+...+.               ......+  +.....++++.+++.++-|..+|.|.+|.
T Consensus       296 ~~lsNP~---------------~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  296 ATLSNPP---------------AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccCCCc---------------cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            4432110               0011112  22234556667778999999999999998

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.83  E-value=7.6e-08  Score=82.52  Aligned_cols=243  Identities=19%  Similarity=0.176  Sum_probs=139.5

Q ss_pred             ceeeeeCccc-cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee------------eCC--CCceEEEEecCCCEEE
Q 009373          150 SIDVLYGHTE-AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS------------SKP--LGCTIRAVAADKKLLV  214 (536)
Q Consensus       150 ~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~------------~~~--~~~~v~~~~~~~~~l~  214 (536)
                      .+....+|.+ .|+.+.++. ...|+++..++.+.......+.+...            +..  ...+..+++.-++.++
T Consensus        27 ~vD~i~~~~d~~~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~  105 (319)
T KOG4714|consen   27 LVDEIMQHADVKLSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVC  105 (319)
T ss_pred             chhhcccccceEEEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceE
Confidence            3444445544 245555553 44677777777776666554433221            111  1223334444567899


Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE--eCCEEEEEe-----cCCeEEEEeCCCceEe
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGS-----WDMTVRVWDRALLKCL  286 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s-----~dg~i~iwd~~~~~~~  286 (536)
                      ++..||.+.+.+.+....            ...+.. .|.+. .+.++  .++.+.++.     .-+..++|+++..+..
T Consensus       106 ~~~~dg~~~v~s~~~~~~------------~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~  172 (319)
T KOG4714|consen  106 IGYADGSLAVFSTDKDLA------------LMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL  172 (319)
T ss_pred             ecCCCceEEEEechHHHh------------hhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccc
Confidence            999999999998754210            000000 11111 11111  333333322     1234455655433322


Q ss_pred             Eeee-ccccEEEEe--ecCC-EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEE
Q 009373          287 KVLR-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       287 ~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd  360 (536)
                      ..-. ....|.+++  |..+ .+++|+ ||.+.+||.+.......+...|+.+++.+.|+| ++..|+++++||.+--||
T Consensus       173 ~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  173 IPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             cccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            2111 333477776  5544 455555 799999999998666666568999999999999 467899999999999999


Q ss_pred             cccCccc-----------------cc-cceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373          361 IINDCTE-----------------AN-VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID  406 (536)
Q Consensus       361 ~~~~~~~-----------------~~-~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  406 (536)
                      ..+....                 .. +.....+......|+++...+..|++|+.-+.|++++
T Consensus       253 as~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  253 ASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             CCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            7742110                 00 0011111223345666666778999999989898875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.82  E-value=7.2e-06  Score=89.64  Aligned_cols=245  Identities=10%  Similarity=0.006  Sum_probs=143.6

Q ss_pred             EEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeeeCC--C--------------CceEEEEecCCCEEEEEe-CCCcEE
Q 009373          162 LTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKP--L--------------GCTIRAVAADKKLLVAGG-TDGFIH  223 (536)
Q Consensus       162 ~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~--------------~~~v~~~~~~~~~l~sg~-~dg~i~  223 (536)
                      ..+++++. ++++++-+.++.|++||.. +..+..+.+  .              ...-+++.++++.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            35778764 6677888888999999976 444433322  0              112245556777666554 457799


Q ss_pred             EEEcccCccceecccCcccccceEEeeC-------CccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeeec--
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWE-------HEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLRH--  291 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--  291 (536)
                      ++|+.++....+.-.+....    ...+       .-..-..++++   +..+++.+.++.|++||..++........  
T Consensus       650 ~id~~~~~V~tlag~G~~g~----~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~  725 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGS----DYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY  725 (1057)
T ss_pred             EEecCCCEEEEEeccCcccC----CCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence            99987654222111100000    0000       01122467773   34566777889999999887654321110  


Q ss_pred             -------c------ccE--EEEeecCCEEEE-ec-CCcEEEEeCCCCcEEEEEc-----------cc---------cccc
Q 009373          292 -------S------DWV--YGLAPHDTTVAS-TS-GSDVYIWDTNSGCLLTVVN-----------GA---------HVGN  334 (536)
Q Consensus       292 -------~------~~v--~~~~~~~~~l~~-~~-d~~i~i~d~~~~~~~~~~~-----------~~---------~~~~  334 (536)
                             .      ...  .++++++..+++ .. ++.|++||+.++.......           .+         ....
T Consensus       726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~  805 (1057)
T PLN02919        726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH  805 (1057)
T ss_pred             cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence                   0      112  234477774444 44 6899999998765321110           00         1113


Q ss_pred             eEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce-e------eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEE
Q 009373          335 TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL-V------ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLI  405 (536)
Q Consensus       335 i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~------~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vw  405 (536)
                      ...++++++|.++++-+.++.|++||..++........ .      ....+.-.....|++++  ..+++-+.++.|++|
T Consensus       806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence            56899999999999999999999999877621100000 0      00112223567888864  677777889999999


Q ss_pred             ECCccc
Q 009373          406 DVRKLL  411 (536)
Q Consensus       406 d~~~~~  411 (536)
                      |+.+..
T Consensus       886 d~~~~~  891 (1057)
T PLN02919        886 DLNKGE  891 (1057)
T ss_pred             ECCCCc
Confidence            998753

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.81  E-value=2e-05  Score=75.95  Aligned_cols=242  Identities=14%  Similarity=0.132  Sum_probs=147.5

Q ss_pred             cccEEEEEEecCCCEEEEEeC----CCcEEEEECCCC--c--eeeee--CCCCceEEEEecCCCEEEEEe-CCCcEEEEE
Q 009373          158 TEAVLTVFVLASAKLLFTSGY----DSIVRMWHLEDG--F--SIASS--KPLGCTIRAVAADKKLLVAGG-TDGFIHCWR  226 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~----dg~v~iwd~~~~--~--~~~~~--~~~~~~v~~~~~~~~~l~sg~-~dg~i~vwd  226 (536)
                      ......++++|++++|++...    ++.|..|.+...  .  .+...  .+....-.++.+++++|+++. .+|.|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            344566789999999999877    578999988764  2  22222  233334466779999888886 489999999


Q ss_pred             cccCccceecccCcccccceEEe--------eCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCce--Ee--Eeee-
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRL--------WEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLK--CL--KVLR-  290 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~~--~~--~~~~-  290 (536)
                      +........       .......        ........++.+  +++++++.. ....|.+|++....  ..  ..+. 
T Consensus       116 l~~~g~l~~-------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~  188 (345)
T PF10282_consen  116 LDDDGSLGE-------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV  188 (345)
T ss_dssp             ECTTSEEEE-------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred             ccCCcccce-------eeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence            976311000       0000000        012244667777  566776654 34579999987654  22  2222 


Q ss_pred             -ccccEEE--EeecCCEEEEec--CCcEEEEeCC--CCc--EEEEEcc---cc--ccceEEEEEeCCCCEEEEEc-CCCc
Q 009373          291 -HSDWVYG--LAPHDTTVASTS--GSDVYIWDTN--SGC--LLTVVNG---AH--VGNTKSLARSHTGDFLFTGG-EDGA  355 (536)
Q Consensus       291 -~~~~v~~--~~~~~~~l~~~~--d~~i~i~d~~--~~~--~~~~~~~---~~--~~~i~~l~~~~~~~~l~tg~-~dg~  355 (536)
                       .......  +.+++++++...  +++|.+|++.  ++.  .+..+..   +.  ......++++|+|++|.++. .++.
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence             3333444  448888887766  6889999888  442  2222221   11  12578899999999887765 4678


Q ss_pred             EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECC
Q 009373          356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR  408 (536)
Q Consensus       356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~  408 (536)
                      |.+|++....  ..+..+..........+.++++|  ++|+++. .++.|.+|++.
T Consensus       269 I~vf~~d~~~--g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  269 ISVFDLDPAT--GTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEECTTT--TTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEEecCC--CceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            9999994321  12233444443344578999965  7777776 56789999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.80  E-value=1.9e-08  Score=62.22  Aligned_cols=37  Identities=16%  Similarity=0.460  Sum_probs=35.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  186 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd  186 (536)
                      .++++++|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5789999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.80  E-value=1.1e-06  Score=82.62  Aligned_cols=296  Identities=14%  Similarity=0.141  Sum_probs=182.1

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCC---------------
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG---------------  220 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg---------------  220 (536)
                      .-.-++..+++||.|.+|++.... -|.+|.-..+..+..+......-+.++|.+++|.+=+..+               
T Consensus        30 ~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          30 SENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             ccCcchhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            356788899999999999987654 4899999888877777777777788899999999865543               


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccC-----EEEEEEeCCEEEEEecCCeEEEEeCCCceEeE-eee--cc
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP-----ITSLALDLTRIYSGSWDMTVRVWDRALLKCLK-VLR--HS  292 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~--~~  292 (536)
                      .+.+||+.++.             .+..+.....+     +.....+..+++-. ....++|+++ ++.... .+.  ..
T Consensus       109 ~~~vwd~~sg~-------------iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~  173 (561)
T COG5354         109 NVFVWDIASGM-------------IVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP  173 (561)
T ss_pred             ceeEEeccCce-------------eEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence            48999998774             22333332222     44444466554433 2356889986 333221 111  12


Q ss_pred             ccEEEEe--ec--CCEEEEe------cCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc-----------
Q 009373          293 DWVYGLA--PH--DTTVAST------SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-----------  351 (536)
Q Consensus       293 ~~v~~~~--~~--~~~l~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-----------  351 (536)
                      ..+..++  |.  +..|+.-      ..+.+++|.+..+..+.+..- ....-..+.|.+.|++|+.--           
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf  252 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF  252 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEEEeeeccccee
Confidence            3333333  33  2233332      246799999987776655421 222334678888888765421           


Q ss_pred             CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--Ce--EEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PW--LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~--l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      .+..+++++++...       +.....-.++|....|+|  +.  +++|-.+-.+.++|++....-.             
T Consensus       253 gesnLyl~~~~e~~-------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~-------------  312 (561)
T COG5354         253 GESNLYLLRITERS-------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFY-------------  312 (561)
T ss_pred             ccceEEEEeecccc-------cceeccccccceeeeecccCCceeEEecccccceeecccccceEEe-------------
Confidence            13457888887442       222225578999999976  33  4445678899999998632111             


Q ss_pred             eCCCeeeeccccccEEEEEecCCEEEEecCC---CeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCc
Q 009373          428 VEPPQRMLHGFECNLLSVDIGADRIVCGGEE---GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT  504 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D---g~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  504 (536)
                             +.........++++.++++.+|.|   |.|-+|+......+.....+...           .-.+|+|||..+
T Consensus       313 -------~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~-----------s~~~wspd~qF~  374 (561)
T COG5354         313 -------FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT-----------SYCDWSPDGQFY  374 (561)
T ss_pred             -------cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc-----------eEeeccCCceEE
Confidence                   111112233455666777776654   56889988876655422222221           245789999887


Q ss_pred             ce
Q 009373          505 DQ  506 (536)
Q Consensus       505 ~~  506 (536)
                      .+
T Consensus       375 ~~  376 (561)
T COG5354         375 DT  376 (561)
T ss_pred             Ee
Confidence            76

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.79  E-value=6e-06  Score=83.35  Aligned_cols=277  Identities=13%  Similarity=0.077  Sum_probs=162.5

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc------eEE--EEecCC-CEEEEEeCCCcEEEEEcccCccceecccCc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC------TIR--AVAADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGS  240 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~------~v~--~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  240 (536)
                      +..++.++.++.|.-.|..+|+.+..+.....      .+.  .+...+ ..++.++.+|.|..+|.++++..-. .   
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~-~---  136 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWK-F---  136 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeee-e---
Confidence            55677788899999999999988877644322      111  112223 7888899999999999988863211 0   


Q ss_pred             ccccceEEeeCC---ccCE-EEEEEeCCEEEEEe---------cCCeEEEEeCCCceEeEeeecc-c-------------
Q 009373          241 EKQNTQFRLWEH---EGPI-TSLALDLTRIYSGS---------WDMTVRVWDRALLKCLKVLRHS-D-------------  293 (536)
Q Consensus       241 ~~~~~~~~~~~h---~~~v-~~l~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~~~-~-------------  293 (536)
                             ....+   ...+ .+..+.++.++.++         .+|.+..+|..+++.+..+... .             
T Consensus       137 -------~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~  209 (488)
T cd00216         137 -------GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQ  209 (488)
T ss_pred             -------cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcc
Confidence                   00011   0001 11223445565554         4688999999999988877521 1             


Q ss_pred             -------cE---EEEeecCCEEEEec-CC------------------cEEEEeCCCCcEEEEEcccccc-----ceEEEE
Q 009373          294 -------WV---YGLAPHDTTVASTS-GS------------------DVYIWDTNSGCLLTVVNGAHVG-----NTKSLA  339 (536)
Q Consensus       294 -------~v---~~~~~~~~~l~~~~-d~------------------~i~i~d~~~~~~~~~~~~~~~~-----~i~~l~  339 (536)
                             .+   ..+.+.+..++.++ ++                  .+.-+|..+|+..-.+...+..     ......
T Consensus       210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~  289 (488)
T cd00216         210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS  289 (488)
T ss_pred             eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence                   01   12223345555554 44                  6999999999998876532211     101111


Q ss_pred             Ee----CCCC---EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEe---------------
Q 009373          340 RS----HTGD---FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA---------------  397 (536)
Q Consensus       340 ~~----~~~~---~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---------------  397 (536)
                      +.    -++.   .+++++.+|.+...|..+++      .+-.....   ...++.+++.++.++               
T Consensus       290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~------~~W~~~~~---~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~  360 (488)
T cd00216         290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK------LISARPEV---EQPMAYDPGLVYLGAFHIPLGLPPQKKKRC  360 (488)
T ss_pred             EEeccccCCCeeEEEEEECCCceEEEEECCCCc------EeeEeEee---ccccccCCceEEEccccccccCcccccCCC
Confidence            11    1333   68888999999999999984      33221110   112233444444432               


Q ss_pred             ---CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHH
Q 009373          398 ---GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       398 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                         .+|.|.-.|+.+++..++..........        . .+.......+...++.++.|+.||.|+.+|..+|+++.+
T Consensus       361 ~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~--------~-~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~  431 (488)
T cd00216         361 KKPGKGGLAALDPKTGKVVWEKREGTIRDSW--------N-IGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWK  431 (488)
T ss_pred             CCCCceEEEEEeCCCCcEeeEeeCCcccccc--------c-cCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeE
Confidence               4678888888887766654332110000        0 000011112344678899999999999999999988876


Q ss_pred             H
Q 009373          475 R  475 (536)
Q Consensus       475 ~  475 (536)
                      .
T Consensus       432 ~  432 (488)
T cd00216         432 F  432 (488)
T ss_pred             E
Confidence            4

The alignment model contains an 8-bladed beta-propeller.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.79  E-value=1.4e-07  Score=94.49  Aligned_cols=180  Identities=14%  Similarity=0.218  Sum_probs=136.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      ++..++.|+.-..+..+|+.+.+..+...-....+.-+..+++.+.+|...|+|.+-|..+.             ..+.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~-------------~~iht  212 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSF-------------ETIHT  212 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcC-------------ceeee
Confidence            45567778877888889999888877776655557777789999999999999999998664             47888


Q ss_pred             eeCCccCEEEEEEeCCEEEEEec---------CCeEEEEeCCCceEeEeee-ccc-cEEEEee--cCCEEEEecCCcEEE
Q 009373          249 LWEHEGPITSLALDLTRIYSGSW---------DMTVRVWDRALLKCLKVLR-HSD-WVYGLAP--HDTTVASTSGSDVYI  315 (536)
Q Consensus       249 ~~~h~~~v~~l~~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~-~~~-~v~~~~~--~~~~l~~~~d~~i~i  315 (536)
                      +..|++.|.++...|+.|++++.         |.-|+|||++..+.+..+. +.+ ....+.|  ..+.+++...|...+
T Consensus       213 ~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  213 FDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             eeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceee
Confidence            99999999999999999999985         5568999999888777666 222 2222332  233444455899999


Q ss_pred             EeCC---CCc-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373          316 WDTN---SGC-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       316 ~d~~---~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~  362 (536)
                      -|..   ... -+..+ ......+.+++++++|+.++.|..+|.|.+|.-+
T Consensus       293 vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             ccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            9843   221 12222 2355569999999999999999999999999843

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.77  E-value=8.1e-09  Score=64.76  Aligned_cols=40  Identities=35%  Similarity=0.514  Sum_probs=38.5

Q ss_pred             CcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHH
Q 009373           67 LPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKE  106 (536)
Q Consensus        67 Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~  106 (536)
                      ||+|++.+||.+|++.++..+++|||+|+.++.++.+|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999974

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.77  E-value=5e-09  Score=68.20  Aligned_cols=45  Identities=38%  Similarity=0.624  Sum_probs=39.4

Q ss_pred             ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHH
Q 009373           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFY  108 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~  108 (536)
                      +.+||+|++.+||+||++.++..+++||+.|++++.++.+|...+
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            678999999999999999999999999999999999999998743

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.77  E-value=1.1e-07  Score=86.69  Aligned_cols=147  Identities=16%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             CCEEEEEecCCeEEEEeCCCce----EeEeee---ccccEEEEeecCCEEEEecC---CcEEEEeCCCCcEEEEEccccc
Q 009373          263 LTRIYSGSWDMTVRVWDRALLK----CLKVLR---HSDWVYGLAPHDTTVASTSG---SDVYIWDTNSGCLLTVVNGAHV  332 (536)
Q Consensus       263 ~~~l~s~s~dg~i~iwd~~~~~----~~~~~~---~~~~v~~~~~~~~~l~~~~d---~~i~i~d~~~~~~~~~~~~~~~  332 (536)
                      +.+++.+..+....+++.....    ......   ....+..+..+...+++-.-   ..+.+|....+.....+  ||-
T Consensus        74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l--Ghv  151 (390)
T KOG3914|consen   74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL--GHV  151 (390)
T ss_pred             ceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh--hhh
Confidence            3456666666665566554322    222222   22223333344444444333   44555555555555444  799


Q ss_pred             cceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee-ccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcc
Q 009373          333 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       333 ~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ..++.++++||+++|+++..|..|+|-.....      ..+.. ..||..-|..++.-+ ..|++||.|++|++||++++
T Consensus       152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~------f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT------FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hhhheeeecCCCCEEEEecCCceEEEEecCcc------cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccC
Confidence            99999999999999999999999999887665      23333 347999999999976 56799999999999999998


Q ss_pred             cccCCCC
Q 009373          411 LRSGRPT  417 (536)
Q Consensus       411 ~~~~~~~  417 (536)
                      .......
T Consensus       226 k~L~t~d  232 (390)
T KOG3914|consen  226 KLLDTCD  232 (390)
T ss_pred             Ccccccc
Confidence            7765443

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.74  E-value=2.8e-05  Score=72.79  Aligned_cols=172  Identities=13%  Similarity=0.100  Sum_probs=119.6

Q ss_pred             ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCccccccceeeeccC
Q 009373          300 PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       300 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      .+|.+++..+-|...+.+...+-.++.   ++.+.|.-..+.-+++-++.|..|| .+-|||..++       .+..+..
T Consensus       330 ~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-------e~kr~e~  399 (668)
T COG4946         330 VNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-------EVKRIEK  399 (668)
T ss_pred             CCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-------eEEEeeC
Confidence            457777777777777777666554443   5777788888888888899999999 8999999887       3555667


Q ss_pred             CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEE
Q 009373          379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVC  454 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s  454 (536)
                      .-+.|-++..++  .+++.+.....|-+.|+.++...                   ..-.....-++.+.++++  ++|-
T Consensus       400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~-------------------~idkS~~~lItdf~~~~nsr~iAY  460 (668)
T COG4946         400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR-------------------LIDKSEYGLITDFDWHPNSRWIAY  460 (668)
T ss_pred             CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee-------------------EecccccceeEEEEEcCCceeEEE
Confidence            788999999976  67888888888999999875211                   111222344566665554  7775


Q ss_pred             ecCCC----eEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373          455 GGEEG----IVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       455 g~~Dg----~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      +--+|    .|+++|+.+++.......           .-...+-+|.|||+.+--.|..+
T Consensus       461 afP~gy~tq~Iklydm~~~Kiy~vTT~-----------ta~DfsPaFD~d~ryLYfLs~Rs  510 (668)
T COG4946         461 AFPEGYYTQSIKLYDMDGGKIYDVTTP-----------TAYDFSPAFDPDGRYLYFLSARS  510 (668)
T ss_pred             ecCcceeeeeEEEEecCCCeEEEecCC-----------cccccCcccCCCCcEEEEEeccc
Confidence            55554    589999998765532211           12246778999999887654433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.72  E-value=1.2e-07  Score=83.41  Aligned_cols=291  Identities=15%  Similarity=0.144  Sum_probs=161.6

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      ..+.|+++.|...|.+|++|...|.|.+|.-+...     ....+++|...                      +|.    
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~E----------------------FDY----   78 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELE----------------------FDY----   78 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccc----------------------hhh----
Confidence            35679999999999999999999999999855332     11112222111                      000    


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeee----------ccccEEE
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR----------HSDWVYG  297 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~v~~  297 (536)
                                    ...+ .-...|..+.|    ....++..+.|++|++|.+........-+          ..+++++
T Consensus        79 --------------LkSl-eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s  143 (460)
T COG5170          79 --------------LKSL-EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTS  143 (460)
T ss_pred             --------------hhhc-cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCC
Confidence                          0000 12345667777    22467788899999999986542211111          1222222


Q ss_pred             Ee--------ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373          298 LA--------PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       298 ~~--------~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                      ..        .+..+++ +             .+.+.+...|.-.|+++.++.|...++++ .|=.|.+|++.-....  
T Consensus       144 ~~~l~lprls~hd~iia-a-------------~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~s--  206 (460)
T COG5170         144 TKELLLPRLSEHDEIIA-A-------------KPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGS--  206 (460)
T ss_pred             HHHhhcccccccceEEE-e-------------ccceeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCc--
Confidence            11        0111111 1             12223335688899999999998887775 5778999998654221  


Q ss_pred             cceeeeccCC-----CCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccccc
Q 009373          370 VLLVATWIPH-----TGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN  441 (536)
Q Consensus       370 ~~~~~~~~~h-----~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (536)
                       ..+...++|     +..|++..|+|   ..+.-.+..|.|++-|++....-...   ...............+.+...+
T Consensus       207 -FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~---~klfe~~~D~v~~~ff~eivsS  282 (460)
T COG5170         207 -FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS---KKLFELTIDGVDVDFFEEIVSS  282 (460)
T ss_pred             -eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc---hhhhhhccCcccchhHHHHhhh
Confidence             223334444     34788999988   67777888999999999842111000   0000000001111123333445


Q ss_pred             EEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcc------cchhHHHhhhhccccccCCCCcceeEee
Q 009373          442 LLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGI------RLENRMRRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       442 v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      +..+.|++  +++++-+. -+|++||+...+..-.....+...      .-+.-.--.+..+.||.|+..+.++++.
T Consensus       283 ISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~  358 (460)
T COG5170         283 ISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS  358 (460)
T ss_pred             hcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence            55666554  46666654 589999998654321111100000      0111222345778999999998887653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.72  E-value=1.7e-05  Score=86.72  Aligned_cols=263  Identities=9%  Similarity=0.035  Sum_probs=138.6

Q ss_pred             EEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeC
Q 009373          205 AVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDR  280 (536)
Q Consensus       205 ~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~  280 (536)
                      ++.+ ++.++++-+.++.|.++|............+......-..-..+-.....+++  +++.|+.+. ..+.|+++|.
T Consensus       574 avd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~  653 (1057)
T PLN02919        574 AIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDF  653 (1057)
T ss_pred             EEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEec
Confidence            4444 45567777778889999875432111100000000000000011223467777  356555554 4578999998


Q ss_pred             CCceEeEeeec-----------------cccE--EEEee-cCCEEEEec-CCcEEEEeCCCCcEEEEEcc-------c--
Q 009373          281 ALLKCLKVLRH-----------------SDWV--YGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNG-------A--  330 (536)
Q Consensus       281 ~~~~~~~~~~~-----------------~~~v--~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-------~--  330 (536)
                      .++........                 -...  .++.+ ++.++++.. ++.|++||..++........       +  
T Consensus       654 ~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~  733 (1057)
T PLN02919        654 VNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS  733 (1057)
T ss_pred             CCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc
Confidence            77653221110                 0011  23446 455555555 68899999988754321110       0  


Q ss_pred             ----cccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCcccccc-------ceeeeccC--------CCCCeEEEEEcC
Q 009373          331 ----HVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANV-------LLVATWIP--------HTGPVNSLAFEF  390 (536)
Q Consensus       331 ----~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~--------h~~~v~~l~~~~  390 (536)
                          .......++++|+++ ++++-+.++.|++||+.++......       .....+..        .-....++++++
T Consensus       734 ~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~  813 (1057)
T PLN02919        734 GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK  813 (1057)
T ss_pred             cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence                112456799999998 5556667799999998865311000       00000100        111345788875


Q ss_pred             --CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCc
Q 009373          391 --PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       391 --~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~  468 (536)
                        ..+++-+.++.|++||..+.........+..-  ... ... ..-......-.+++.+++.+++-+.++.|++||+.+
T Consensus       814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G--~~d-G~~-~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG--FKD-GKA-LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC--CCC-Ccc-cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence              57777778899999998764322111000000  000 000 000001122345666777889999999999999998


Q ss_pred             hhh
Q 009373          469 AFE  471 (536)
Q Consensus       469 ~~~  471 (536)
                      +..
T Consensus       890 ~~~  892 (1057)
T PLN02919        890 GEA  892 (1057)
T ss_pred             Ccc
Confidence            765

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=5.6e-05  Score=68.72  Aligned_cols=251  Identities=13%  Similarity=0.113  Sum_probs=159.2

Q ss_pred             CccceeeeeCccccEEEEEEecCCCEEEEEeCC---CcEEEEECCC--Cceee----eeCCCCceEEEEecCCCEEEEEe
Q 009373          147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYD---SIVRMWHLED--GFSIA----SSKPLGCTIRAVAADKKLLVAGG  217 (536)
Q Consensus       147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~--~~~~~----~~~~~~~~v~~~~~~~~~l~sg~  217 (536)
                      |......+-.+.+.++-|+|+|++++|+++-.+   |.|-.|.++.  |+...    ...++...-.++++++++++++.
T Consensus        28 g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An  107 (346)
T COG2706          28 GELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN  107 (346)
T ss_pred             cccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE
Confidence            444455566778889999999999999988654   7788877764  43321    22344445567889999988887


Q ss_pred             C-CCcEEEEEcccCccceecccCcccccceEEeeCCccC----------EEEEEE--eCCEEEEEec-CCeEEEEeCCCc
Q 009373          218 T-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP----------ITSLAL--DLTRIYSGSW-DMTVRVWDRALL  283 (536)
Q Consensus       218 ~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~--~~~~l~s~s~-dg~i~iwd~~~~  283 (536)
                      . .|.|.++-+.+...          .........|.+.          +....+  ++++|++.+. --.|.+|++..+
T Consensus       108 Y~~g~v~v~p~~~dG~----------l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg  177 (346)
T COG2706         108 YHSGSVSVYPLQADGS----------LQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG  177 (346)
T ss_pred             ccCceEEEEEcccCCc----------cccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence            5 48899998865311          1122222233333          555556  6677777653 246889999876


Q ss_pred             eEeEee----eccccEE--EEeecCCEEEEec--CCcEEEEeCCCC-c---EEEEE---ccc--cccceEEEEEeCCCCE
Q 009373          284 KCLKVL----RHSDWVY--GLAPHDTTVASTS--GSDVYIWDTNSG-C---LLTVV---NGA--HVGNTKSLARSHTGDF  346 (536)
Q Consensus       284 ~~~~~~----~~~~~v~--~~~~~~~~l~~~~--d~~i~i~d~~~~-~---~~~~~---~~~--~~~~i~~l~~~~~~~~  346 (536)
                      +....-    .......  .+.|++++.....  +++|.+|..... .   .++.+   +..  -.....++..+|+|++
T Consensus       178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF  257 (346)
T COG2706         178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF  257 (346)
T ss_pred             ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence            554322    2223333  3448999887777  799999988773 2   22222   111  2335678889999999


Q ss_pred             EEEEcC-CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC-CcEEEEECCc
Q 009373          347 LFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD-GKLSLIDVRK  409 (536)
Q Consensus       347 l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d-g~i~vwd~~~  409 (536)
                      |.++.. ...|-+|.+.....  .+..+.....+....+...+++  ++|+++..+ ..|.+|.+..
T Consensus       258 LYasNRg~dsI~~f~V~~~~g--~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         258 LYASNRGHDSIAVFSVDPDGG--KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             EEEecCCCCeEEEEEEcCCCC--EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            988754 34688888766532  1233333344444466777754  788888775 4688887764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=5.9e-06  Score=81.71  Aligned_cols=219  Identities=15%  Similarity=0.080  Sum_probs=123.5

Q ss_pred             eeeeCccccEEEEEEecCCCE---EEEEeCCC--cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeC-CC---
Q 009373          152 DVLYGHTEAVLTVFVLASAKL---LFTSGYDS--IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGT-DG---  220 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~---l~sgs~dg--~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~-dg---  220 (536)
                      +.+......+.+-+|+|||+.   +++...+|  .|.+.++.+++...  .+.+.. ..-.++|||+.|+..+. +|   
T Consensus       178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~-~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQ-LMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCc-cceEECCCCCEEEEEECCCCCcc
Confidence            345555666778899999974   23444444  57777888775433  333322 23578899988876553 23   


Q ss_pred             -cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEE--eCCC-ceEeEeee-cc
Q 009373          221 -FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVW--DRAL-LKCLKVLR-HS  292 (536)
Q Consensus       221 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iw--d~~~-~~~~~~~~-~~  292 (536)
                       .+..|++..+.          .........++.+.....+|  ||+.|+..+ .+|...+|  ++.. +.....+. ..
T Consensus       257 i~~~~~~~~~g~----------~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~  326 (428)
T PRK01029        257 LFIQSFSLETGA----------IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY  326 (428)
T ss_pred             eeEEEeecccCC----------CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence             33445654321          00111112122233445677  777777655 46655555  4432 22233333 22


Q ss_pred             ccE--EEEeecCCEEEEec--C--CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC---CCcEEEEEccc
Q 009373          293 DWV--YGLAPHDTTVASTS--G--SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIIN  363 (536)
Q Consensus       293 ~~v--~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~  363 (536)
                      ..+  ..++|+|+.|+...  +  ..|.+||+.+++......  ....+....|+|+|+.|+..+.   ...|.++|+..
T Consensus       327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            232  34569999887665  2  369999999887654332  2345678899999998775433   34578888876


Q ss_pred             CccccccceeeeccCCCCCeEEEEEcC
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                      +.      . ..+....+.+...+|+|
T Consensus       405 g~------~-~~Lt~~~g~~~~p~Ws~  424 (428)
T PRK01029        405 KK------T-RKIVIGSGEKRFPSWGA  424 (428)
T ss_pred             CC------E-EEeecCCCcccCceecC
Confidence            62      1 12222334455566665

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.69  E-value=3.3e-07  Score=83.64  Aligned_cols=153  Identities=16%  Similarity=0.163  Sum_probs=103.7

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCce----eeeeC-CCCceEEEEecCCCEEEEEeCC---CcEEEEEcccCcc
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS----IASSK-PLGCTIRAVAADKKLLVAGGTD---GFIHCWRAVEVLP  232 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~----~~~~~-~~~~~v~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~  232 (536)
                      +..+..++++++||.+..+....++++.....    +.... +.......+..+......+..-   ..+.+|....   
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~---  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS---  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc---
Confidence            44556778889999998888877777754432    11111 1111122222333333333333   4444444322   


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe-ecCCEEEE
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVAS  307 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~  307 (536)
                                 .......||-+-++++++  |+.+++++..|..|++-.......+..+-  |...|..++ .++..|++
T Consensus       142 -----------~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS  210 (390)
T KOG3914|consen  142 -----------GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLS  210 (390)
T ss_pred             -----------cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeee
Confidence                       234456699999999999  88999999999999998877666666554  999999998 55666677


Q ss_pred             ec-CCcEEEEeCCCCcEEEEE
Q 009373          308 TS-GSDVYIWDTNSGCLLTVV  327 (536)
Q Consensus       308 ~~-d~~i~i~d~~~~~~~~~~  327 (536)
                      ++ |+++++||+++|+.+.++
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             cCCCCcEEEEecccCCccccc
Confidence            66 999999999999988766

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.68  E-value=8.5e-05  Score=79.89  Aligned_cols=305  Identities=14%  Similarity=0.131  Sum_probs=178.3

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEE----ECCCCc--eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcc-
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMW----HLEDGF--SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV-  228 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iw----d~~~~~--~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~-  228 (536)
                      ...+.|.++.+-++...++.+..+|.|.+.    +..+..  .+.. -..+....+++||+..|+..+.+|++.+-+-. 
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~-vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS-VDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE-EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            345789999999999999999999999999    544432  2222 23345556777999999999999998776321 


Q ss_pred             ---c---------Cccce---------ecccCccccc-------c------eEEeeCCccCEEEEEE--eCCEEEEEec-
Q 009373          229 ---E---------VLPHL---------FDISGSEKQN-------T------QFRLWEHEGPITSLAL--DLTRIYSGSW-  271 (536)
Q Consensus       229 ---~---------~~~~~---------~~~~~~~~~~-------~------~~~~~~h~~~v~~l~~--~~~~l~s~s~-  271 (536)
                         .         +....         ..+.++....       +      ...+. +.+.-..|+|  ||.++++.+. 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence               0         00000         0001111000       0      01122 3445668889  8889888764 


Q ss_pred             --C---CeEEEEeCCCceEeEeee---ccccEEEEeecCCEEEEec--C--CcEEEEeCCCCcEEEEEcc---ccccceE
Q 009373          272 --D---MTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS--G--SDVYIWDTNSGCLLTVVNG---AHVGNTK  336 (536)
Q Consensus       272 --d---g~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~---~~~~~i~  336 (536)
                        .   +.++||+-+ |....+-+   .-....+..|.|+++++..  .  ..|.+|.- +|-....|..   .....|.
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~  308 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVI  308 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceee
Confidence              2   579999976 55444333   1112233449999999887  2  34666653 4433333321   3456899


Q ss_pred             EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc-CCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccc
Q 009373          337 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR  412 (536)
Q Consensus       337 ~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~  412 (536)
                      .+.|++++..||.-..|. |.+|-..+..    +-.-+.+. .....+..+.|+|   ..|...+.+|.+..+++.-...
T Consensus       309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH----WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~  383 (928)
T PF04762_consen  309 ELAWNSDSEILAVWLEDR-VQLWTRSNYH----WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVS  383 (928)
T ss_pred             EEEECCCCCEEEEEecCC-ceEEEeeCCE----EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEE
Confidence            999999999999977665 9999987762    11111222 2233455599986   5677777777776655432111


Q ss_pred             --cCCCC-CCCceeeEE------------eeCCCeeee-ccccccEEEEEecCC--EEEEecCCCeEEEEeCCch
Q 009373          413 --SGRPT-SGKRVSRVI------------EVEPPQRML-HGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       413 --~~~~~-~~~~~~~~~------------~~~~~~~~~-~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~  469 (536)
                        ..... ....+..+.            .+++|.... -....+|.+++++.+  .+++-..||.|.+|.....
T Consensus       384 ~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  384 RSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             ecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence              11111 111111111            112222111 122345666666554  6999999999999996654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=7.6e-05  Score=67.88  Aligned_cols=266  Identities=11%  Similarity=0.118  Sum_probs=156.5

Q ss_pred             CCcEEEEECCCCce----eeee-CCCCceEEEEecCCCEEEEEeCC---CcEEEEEccc--CccceecccCcccccceEE
Q 009373          179 DSIVRMWHLEDGFS----IASS-KPLGCTIRAVAADKKLLVAGGTD---GFIHCWRAVE--VLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       179 dg~v~iwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~l~sg~~d---g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~  248 (536)
                      +.-|.+|++++..-    +... .....+-+.+.++++.|+++..+   |.|..|.+..  |...           .+-.
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-----------~ln~   83 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-----------FLNR   83 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-----------Eeec
Confidence            46799999874321    1111 22344567788999989888655   7777777654  2211           1111


Q ss_pred             eeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeCCC-ceEe---Eeeecccc----------EEE--EeecCCEEEEec
Q 009373          249 LWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRAL-LKCL---KVLRHSDW----------VYG--LAPHDTTVASTS  309 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~~~-~~~~---~~~~~~~~----------v~~--~~~~~~~l~~~~  309 (536)
                      ......+-+.+++  ++++++++.. -|.|.++-++. |...   ..+.|.+.          +-.  +.|+++++++..
T Consensus        84 ~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D  163 (346)
T COG2706          84 QTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD  163 (346)
T ss_pred             cccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence            1111223356666  6677777654 57899998865 3322   33334433          333  349999999988


Q ss_pred             --CCcEEEEeCCCCcEEEEEc--cccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCc-cccccceeeeccC---CC
Q 009373          310 --GSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDC-TEANVLLVATWIP---HT  380 (536)
Q Consensus       310 --d~~i~i~d~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~-~~~~~~~~~~~~~---h~  380 (536)
                        -..|.+|++..|+....-.  -......+-|.|+|++++....++ +++|.+|...... ....+..+.++..   -.
T Consensus       164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~  243 (346)
T COG2706         164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT  243 (346)
T ss_pred             cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence              4679999999876533211  124557889999999998766654 8999999998751 1111122222221   12


Q ss_pred             CCeEEEEEc--CCeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecC
Q 009373          381 GPVNSLAFE--FPWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGE  457 (536)
Q Consensus       381 ~~v~~l~~~--~~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~  457 (536)
                      ....+|..+  +++|+++.. ...|.++.+......        .. +.    ......|....-+.+++++++|++++.
T Consensus       244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~--------L~-~~----~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK--------LE-LV----GITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE--------EE-EE----EEeccCCcCCccceeCCCCCEEEEEcc
Confidence            344455555  467777654 347888877642110        00 00    011124444566788888887666654


Q ss_pred             -CCeEEEEeCCc
Q 009373          458 -EGIVRIWNFSQ  468 (536)
Q Consensus       458 -Dg~i~vW~~~~  468 (536)
                       +..|.+|..+.
T Consensus       311 ~sd~i~vf~~d~  322 (346)
T COG2706         311 KSDNITVFERDK  322 (346)
T ss_pred             CCCcEEEEEEcC
Confidence             55688888764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.68  E-value=9.6e-06  Score=81.05  Aligned_cols=155  Identities=19%  Similarity=0.174  Sum_probs=95.9

Q ss_pred             EEeeCCccCEEEEEE--eCCEEEEEecC---CeEEEEeCCCceEeEeeeccccE--EEEeecCCEEEEe-c-CC--cEEE
Q 009373          247 FRLWEHEGPITSLAL--DLTRIYSGSWD---MTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAST-S-GS--DVYI  315 (536)
Q Consensus       247 ~~~~~h~~~v~~l~~--~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~-~-d~--~i~i  315 (536)
                      ..+..+...+....|  +++.|+..+.+   ..|.+||+.+++........+.+  ..++|+|+.++.. . ++  .|.+
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            334456778888888  77888766543   36899999888664433322222  3556899887643 3 33  6888


Q ss_pred             EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CC--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--  390 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--  390 (536)
                      +|+.+++... +. .+........|+|+|+.|+..+. +|  .|+++|+.++..    ..+ +..+  .......|+|  
T Consensus       272 ~d~~~~~~~~-lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~----~~l-t~~~--~~~~~~~~Spdg  342 (430)
T PRK00178        272 MDLASRQLSR-VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA----ERV-TFVG--NYNARPRLSADG  342 (430)
T ss_pred             EECCCCCeEE-cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEe-ecCC--CCccceEECCCC
Confidence            9999886543 32 34455667889999997766553 44  466667665521    111 1122  2223456765  


Q ss_pred             CeEEEEeC-CC--cEEEEECCcc
Q 009373          391 PWLVSAAG-DG--KLSLIDVRKL  410 (536)
Q Consensus       391 ~~l~s~s~-dg--~i~vwd~~~~  410 (536)
                      +.|+..+. ++  .|.+||+.++
T Consensus       343 ~~i~~~~~~~~~~~l~~~dl~tg  365 (430)
T PRK00178        343 KTLVMVHRQDGNFHVAAQDLQRG  365 (430)
T ss_pred             CEEEEEEccCCceEEEEEECCCC
Confidence            56666554 33  5788888764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.66  E-value=1.3e-07  Score=92.57  Aligned_cols=213  Identities=17%  Similarity=0.183  Sum_probs=134.0

Q ss_pred             eeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCCc-eeeeeC--CCCceEEEEecCCCEEEEEeCCCcEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGF-SIASSK--PLGCTIRAVAADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~~-~~~~~~--~~~~~v~~~~~~~~~l~sg~~dg~i~vwd  226 (536)
                      --.+.||+.+|+.+.|+|.. ..+++++.|..|..||+.+.. .+..+.  ....+-+.+......+.+.+....|.+||
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd  186 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD  186 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence            35788999999999999965 589999999999999998753 233322  12234445553333445556677899999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeE--eeeccccEEEEeec
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLK--VLRHSDWVYGLAPH  301 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~  301 (536)
                      .+.+            ..+...+.+|...|..+.|+   ...+.+++.||+|+.||........  +.....+|..    
T Consensus       187 ~r~g------------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~----  250 (1081)
T KOG0309|consen  187 LRKG------------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR----  250 (1081)
T ss_pred             ccCC------------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee----
Confidence            9877            34677788899999999993   4678999999999999976432211  1111111110    


Q ss_pred             CCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          302 DTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       302 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      ++++                         .-+.-.++-+...++.+-.-.-+..-..|+..+..     .++.++.||..
T Consensus       251 ~r~~-------------------------Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~-----~pVh~F~GH~D  300 (1081)
T KOG0309|consen  251 GRYL-------------------------PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN-----TPVHTFVGHDD  300 (1081)
T ss_pred             cccc-------------------------ccCceeEeccccCCeeeeeccccchhhhhccccCC-----cceeeecCcch
Confidence            0000                         00011111111111111111112223344444442     67899999999


Q ss_pred             CeEEEEEc------C------CeEEEEeCCCcEEEEECCc
Q 009373          382 PVNSLAFE------F------PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       382 ~v~~l~~~------~------~~l~s~s~dg~i~vwd~~~  409 (536)
                      .|....|-      +      -.|+|-|.|..+++|-+.+
T Consensus       301 ~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  301 VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            99877772      1      2699999999999999865

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=1.4e-07  Score=84.27  Aligned_cols=135  Identities=12%  Similarity=0.140  Sum_probs=103.8

Q ss_pred             EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc-----eEe
Q 009373          214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----KCL  286 (536)
Q Consensus       214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~-----~~~  286 (536)
                      ++.+.+..|-+-|++++..              ..+ ...+.|.++.|  .++.++.|...|.|..+|++..     .+.
T Consensus       228 fs~G~sqqv~L~nvetg~~--------------qsf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQ--------------QSF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             ecccccceeEEEEeecccc--------------ccc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            5566677788888887632              112 25677888888  5688999999999999999854     566


Q ss_pred             EeeeccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcE---EEEEccccccceEE--EEEeCCCCEEEEEcCCCcEE
Q 009373          287 KVLRHSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCL---LTVVNGAHVGNTKS--LARSHTGDFLFTGGEDGAIH  357 (536)
Q Consensus       287 ~~~~~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~i~~--l~~~~~~~~l~tg~~dg~i~  357 (536)
                      ..+-|...|+++.   .++.+|++.+ +|+|.+||++.-++   +..+. ||...-.-  +...+....+++++.|...+
T Consensus       293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~GdDcytR  371 (425)
T KOG2695|consen  293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGDDCYTR  371 (425)
T ss_pred             EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEccCeeEEE
Confidence            7777999999987   4677777777 99999999998776   77774 57553332  23455667889999999999


Q ss_pred             EEEcccC
Q 009373          358 MYEIIND  364 (536)
Q Consensus       358 iwd~~~~  364 (536)
                      ||.++.+
T Consensus       372 iWsl~~g  378 (425)
T KOG2695|consen  372 IWSLDSG  378 (425)
T ss_pred             EEecccC
Confidence            9999988

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=5.2e-08  Score=86.86  Aligned_cols=155  Identities=16%  Similarity=0.213  Sum_probs=110.9

Q ss_pred             ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          300 PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       300 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      ..+..+.+|.+..+-+-|+.+|.....   ...+.|.++.|...+++++.|..+|.|..+|++....... .+... .-|
T Consensus       223 i~gyhfs~G~sqqv~L~nvetg~~qsf---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~r-lyh  297 (425)
T KOG2695|consen  223 IMGYHFSVGLSQQVLLTNVETGHQQSF---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQR-LYH  297 (425)
T ss_pred             cceeeecccccceeEEEEeeccccccc---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCC-cceEE-EEc
Confidence            344445566688888899888754332   2567788999999899999999999999999998743222 22222 248


Q ss_pred             CCCeEEEE---EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE----EEEEecCCEE
Q 009373          380 TGPVNSLA---FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL----LSVDIGADRI  452 (536)
Q Consensus       380 ~~~v~~l~---~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~l  452 (536)
                      .+.|+++.   |+..+|++.+.+|+|++||.+..+...                ......||....    ..+......+
T Consensus       298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----------------~V~qYeGHvN~~a~l~~~v~~eeg~I  361 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----------------SVMQYEGHVNLSAYLPAHVKEEEGSI  361 (425)
T ss_pred             CcchhhhhhhccccceEeeccCcCceeEeeehhhhccc----------------ceeeeecccccccccccccccccceE
Confidence            88888875   467899999999999999998643211                122234443322    2334445589


Q ss_pred             EEecCCCeEEEEeCCchhhHHHH
Q 009373          453 VCGGEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       453 ~sg~~Dg~i~vW~~~~~~~~~~~  475 (536)
                      +++|.|...|||.+..|..+.+.
T Consensus       362 ~s~GdDcytRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  362 FSVGDDCYTRIWSLDSGHLLCTI  384 (425)
T ss_pred             EEccCeeEEEEEecccCceeecc
Confidence            99999999999999998877654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.63  E-value=7.9e-06  Score=70.76  Aligned_cols=191  Identities=10%  Similarity=-0.001  Sum_probs=124.0

Q ss_pred             eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe----ecCCEEEEecCCcEEEEeCCCCcEEEEEcccccc--
Q 009373          262 DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVG--  333 (536)
Q Consensus       262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~--  333 (536)
                      .-.+|+.|+.-|...+|...+.+....+-  +...|.-+.    .....+.+..|.++++.++.-+......   |..  
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---h~~~~  159 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---HNQNL  159 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee---ecccc
Confidence            44689999999999999998766544433  333333222    3344555555888888877655433333   322  


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee-eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA-TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ...+++++++++++++.+....|..|.+......    .+. .....+..-.+..|+.  ..+|++..||++.|||++..
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey----~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~  235 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY----IENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM  235 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccce----eeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence            3789999999999999999999999999876421    111 2233344446677764  68999999999999999976


Q ss_pred             cccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--C--CEEEEecCCCeEEEEeCCchhhHH
Q 009373          411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--A--DRIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      ..+......              .-..|.+.+....|+  +  ++|.-.-.-+.+.+-|+.++...+
T Consensus       236 ~tpm~~~ss--------------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  236 ATPMAEISS--------------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             ccchhhhcc--------------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            433221111              112355555555555  2  255544456789999999876544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.62  E-value=0.00015  Score=68.08  Aligned_cols=165  Identities=16%  Similarity=0.163  Sum_probs=118.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCC-cEEEEEcccCccceecccCcccccceE
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG-FIHCWRAVEVLPHLFDISGSEKQNTQF  247 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~  247 (536)
                      +|++++..|. |.+.|.+...+-.++.-......-..+..+++-++.|..|| .+-|+|..++              ...
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--------------e~k  395 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--------------EVK  395 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc--------------eEE
Confidence            4677777775 66777776666555543333333445556777899999999 8999998876              334


Q ss_pred             EeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-C----CcEEEEe
Q 009373          248 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-G----SDVYIWD  317 (536)
Q Consensus       248 ~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d----~~i~i~d  317 (536)
                      .+.+.-+.|.++..  +|+.++.+.....+-+.|+.++.....-+ ..+-|+.+.  +++++++-+- +    ..|++||
T Consensus       396 r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd  475 (668)
T COG4946         396 RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD  475 (668)
T ss_pred             EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence            45566788999988  77889988888899999999987654443 556677766  8888988876 4    3599999


Q ss_pred             CCCCcEEEEEccccccceEEEEEeCCCCEEEEE
Q 009373          318 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG  350 (536)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg  350 (536)
                      +..++......  ..+.=.+-+|.|++++|.--
T Consensus       476 m~~~Kiy~vTT--~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         476 MDGGKIYDVTT--PTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             cCCCeEEEecC--CcccccCcccCCCCcEEEEE
Confidence            99988765542  33334466788999876543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=1.9e-05  Score=78.81  Aligned_cols=153  Identities=16%  Similarity=0.127  Sum_probs=90.8

Q ss_pred             eeCCccCEEEEEE--eCCEEEEEecC-C--eEEEEeCCCceEeEeeeccc--cEEEEeecCCEEEEec--CC--cEEEEe
Q 009373          249 LWEHEGPITSLAL--DLTRIYSGSWD-M--TVRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTS--GS--DVYIWD  317 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~--d~--~i~i~d  317 (536)
                      +..+...+.+..|  |++.|+..+.+ +  .|.+||+.+++.........  .-..++|+++.++...  ++  .|.++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            4455667888888  77777766543 3  58889998876533322222  2235569999776543  44  488889


Q ss_pred             CCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCc--EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--Ce
Q 009373          318 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PW  392 (536)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~  392 (536)
                      +.+++... +. .+........|+|+|+.|+..+. +|.  |.++|+.++..    ..+ ++.++  .....+|+|  ++
T Consensus       293 l~tg~~~~-lt-~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~----~~L-t~~g~--~~~~~~~SpDG~~  363 (448)
T PRK04792        293 IATKALTR-IT-RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV----SRL-TFEGE--QNLGGSITPDGRS  363 (448)
T ss_pred             CCCCCeEE-Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEE-ecCCC--CCcCeeECCCCCE
Confidence            98876543 32 24455677899999998766553 444  55556655521    111 12222  233457765  56


Q ss_pred             EEEEeC-CC--cEEEEECCcc
Q 009373          393 LVSAAG-DG--KLSLIDVRKL  410 (536)
Q Consensus       393 l~s~s~-dg--~i~vwd~~~~  410 (536)
                      |+..+. ++  .|.++|+.++
T Consensus       364 l~~~~~~~g~~~I~~~dl~~g  384 (448)
T PRK04792        364 MIMVNRTNGKFNIARQDLETG  384 (448)
T ss_pred             EEEEEecCCceEEEEEECCCC
Confidence            655544 44  3555676653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=2.5e-06  Score=84.24  Aligned_cols=232  Identities=12%  Similarity=0.017  Sum_probs=154.4

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cC------------CCEEEEEeCCCcEE
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--AD------------KKLLVAGGTDGFIH  223 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~------------~~~l~sg~~dg~i~  223 (536)
                      ...-.++.|+|.| ++|-|+ ...|.+-|..+-+.+..+.-|...|..+.  |.            .-.|+++...|.|.
T Consensus        15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            3345678898755 566665 46788999999999999988888777654  21            12678888899999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE-----eC-CEEEEEecCCeEEEEeCCCceEeEeeeccccE-E
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DL-TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV-Y  296 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v-~  296 (536)
                      +||+..+.             ....+..|.+++..++|     +. +.|++-....++.+|+..+|+..........+ .
T Consensus        93 l~d~~~~s-------------~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs  159 (1062)
T KOG1912|consen   93 LVDFVLAS-------------VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS  159 (1062)
T ss_pred             EEEehhhh-------------hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence            99987653             44556778899999999     23 56777788899999999999999888744444 3


Q ss_pred             EEe---ecCC-EEEEecCCcEEEEeCCC-------CcEEEEEcccccc------------c-------------eEEEEE
Q 009373          297 GLA---PHDT-TVASTSGSDVYIWDTNS-------GCLLTVVNGAHVG------------N-------------TKSLAR  340 (536)
Q Consensus       297 ~~~---~~~~-~l~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~------------~-------------i~~l~~  340 (536)
                      |+.   .+.+ +.+.++.|.+.+-+.-.       ++..+.- ..|..            .             .-.++|
T Consensus       160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~-sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT-SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe-cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            455   3333 44555577666655422       1222211 11211            0             112456


Q ss_pred             eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE--cC--CeEEEEeCCCcEEEEECCccc
Q 009373          341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EF--PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~--~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      +|.-+.++-......+.++|+.-.      .++....-..+.+.-+.+  +|  +.|++.-.||.+.+|--+...
T Consensus       239 ~p~~rn~lfi~~prellv~dle~~------~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~  307 (1062)
T KOG1912|consen  239 SPHWRNILFITFPRELLVFDLEYE------CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP  307 (1062)
T ss_pred             ChhhhceEEEEeccceEEEcchhh------ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence            776554444556777999999877      444444334444444555  33  689999999999999876543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.58  E-value=1.2e-06  Score=86.97  Aligned_cols=150  Identities=19%  Similarity=0.100  Sum_probs=115.4

Q ss_pred             ccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcccc
Q 009373          253 EGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH  331 (536)
Q Consensus       253 ~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~  331 (536)
                      ...+.|.++.+..|+.|+.+|.|++++.... ....+.|...    ...|.++++|+ ||+|.|..+-+.+...++.  .
T Consensus        39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f  111 (846)
T KOG2066|consen   39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGN-PKTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--F  111 (846)
T ss_pred             hhHHHHHHhhcceeeeccccceEEEEecCCc-cccccccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe--c
Confidence            4567777888999999999999999987533 2333334333    56799999999 8999999999988887764  6


Q ss_pred             ccceEEEEEeCC-----CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373          332 VGNTKSLARSHT-----GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID  406 (536)
Q Consensus       332 ~~~i~~l~~~~~-----~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd  406 (536)
                      ..++.+++++|+     .+.+++|+.-| +.++.-+--+..   ..+ .+....++|.++.|.+++++=++.+| |+|||
T Consensus       112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk---~~v-~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd  185 (846)
T KOG2066|consen  112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK---DSV-VLSEGEGPIHSIKWRGNLIAWANDDG-VKVYD  185 (846)
T ss_pred             CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc---cce-eeecCccceEEEEecCcEEEEecCCC-cEEEe
Confidence            678999999997     46799999999 777764332111   112 45566889999999999999999887 89999


Q ss_pred             CCcccccCC
Q 009373          407 VRKLLRSGR  415 (536)
Q Consensus       407 ~~~~~~~~~  415 (536)
                      +.+......
T Consensus       186 ~~~~~~l~~  194 (846)
T KOG2066|consen  186 TPTRQRLTN  194 (846)
T ss_pred             ccccceeec
Confidence            988655543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=2.4e-05  Score=74.77  Aligned_cols=225  Identities=12%  Similarity=0.127  Sum_probs=140.8

Q ss_pred             EEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCCCceEEEEecC--CCEEEE-----EeCCCcEEEEEcccCccc
Q 009373          162 LTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLGCTIRAVAAD--KKLLVA-----GGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       162 ~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~--~~~l~s-----g~~dg~i~vwd~~~~~~~  233 (536)
                      ++..|++|..+.+ =-..+.|.+|++.+.+. ...+......-..++|.  ...+++     ++.-+.|++|........
T Consensus       129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~  207 (566)
T KOG2315|consen  129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH  207 (566)
T ss_pred             cccccccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence            5778887765433 22346799999876432 33344444455566654  334444     455577999987522110


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEEe--C-CEEE--EEecC---------CeEEEEeCCCceEeEeeeccccEEEEe
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLALD--L-TRIY--SGSWD---------MTVRVWDRALLKCLKVLRHSDWVYGLA  299 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~--s~s~d---------g~i~iwd~~~~~~~~~~~~~~~v~~~~  299 (536)
                              .......+.  ...=..+.|+  + ..|+  +..-|         .++++.++....+...+...++|.++.
T Consensus       208 --------~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~  277 (566)
T KOG2315|consen  208 --------QPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT  277 (566)
T ss_pred             --------chhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence                    000011110  1112234442  1 1222  22223         478888888667777777899999998


Q ss_pred             --ecCCEEEEec---CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC---CCcEEEEEcccCccccccc
Q 009373          300 --PHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       300 --~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~  371 (536)
                        ++++-++++.   -..+.|||++ +.++..+   ..++=+++-|+|.|++++.++-   -|.|-|||+.+.      +
T Consensus       278 W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~------K  347 (566)
T KOG2315|consen  278 WSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR------K  347 (566)
T ss_pred             ECCCCCEEEEEEecccceEEEEcCC-CCEeEeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch------h
Confidence              6676666655   4889999987 4556655   4556678999999999888775   488999999887      5


Q ss_pred             eeeeccCCCCCeEEEEEcC--CeEEEEeC------CCcEEEEECCc
Q 009373          372 LVATWIPHTGPVNSLAFEF--PWLVSAAG------DGKLSLIDVRK  409 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~~--~~l~s~s~------dg~i~vwd~~~  409 (536)
                      ++..+.....  +-..|+|  .+++|+..      |+.++||+...
T Consensus       348 ~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  348 LIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             hccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence            6666554443  3456765  68887765      78899999853

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.54  E-value=0.0004  Score=63.53  Aligned_cols=206  Identities=14%  Similarity=0.028  Sum_probs=125.6

Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373          163 TVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  241 (536)
Q Consensus       163 ~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  241 (536)
                      ++.|.+ ++.++++--..+.|..|+..++.......+. ..-..+...+..++.+..++. .++|..++..         
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~---------   72 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKV---------   72 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EEEEEEECTTSEEEEEETTCE-EEEETTTTEE---------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-CceEEEEccCCEEEEEEcCce-EEEecCCCcE---------
Confidence            567887 6777778778999999999887654422222 223334423455666665544 4558776531         


Q ss_pred             cccceEEee--C-CccCEEEEEE--eCCEEEEEecC--------CeEEEEeCCCceEeEeeeccccEEEE--eecCCEEE
Q 009373          242 KQNTQFRLW--E-HEGPITSLAL--DLTRIYSGSWD--------MTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA  306 (536)
Q Consensus       242 ~~~~~~~~~--~-h~~~v~~l~~--~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~  306 (536)
                        .......  . .....+++++  +|+..++....        |.|..++.. ++.......-...+.+  +++++.|+
T Consensus        73 --~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   73 --TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             --EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEE
T ss_pred             --EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchhee
Confidence              1222221  1 3456778888  55655554433        567777877 5554444433444444  48888776


Q ss_pred             Eec--CCcEEEEeCCCCcE----EEEEcc--ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          307 STS--GSDVYIWDTNSGCL----LTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       307 ~~~--d~~i~i~d~~~~~~----~~~~~~--~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      .+.  .+.|..|++.....    ...+..  ...+..-.+++..+|++.++....+.|.++|.. +      ..+..+..
T Consensus       150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G------~~~~~i~~  222 (246)
T PF08450_consen  150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G------KLLREIEL  222 (246)
T ss_dssp             EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S------CEEEEEE-
T ss_pred             ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c------cEEEEEcC
Confidence            544  68899998863221    122211  122347789999999988888889999999987 5      34444444


Q ss_pred             CCCCeEEEEEc
Q 009373          379 HTGPVNSLAFE  389 (536)
Q Consensus       379 h~~~v~~l~~~  389 (536)
                      ....+++++|.
T Consensus       223 p~~~~t~~~fg  233 (246)
T PF08450_consen  223 PVPRPTNCAFG  233 (246)
T ss_dssp             SSSSEEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            45588999994

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=1.6e-05  Score=75.81  Aligned_cols=239  Identities=14%  Similarity=0.152  Sum_probs=136.5

Q ss_pred             cEEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCceeeeeCCC-----CceEEEEecCCCEEEEEeCCCcEE
Q 009373          160 AVLTVFVLASAKLLFTSGY-----------DSIVRMWHLEDGFSIASSKPL-----GCTIRAVAADKKLLVAGGTDGFIH  223 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~-----------dg~v~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~~l~sg~~dg~i~  223 (536)
                      .|.-+.|||+.+||+|-|.           ...+.|||+.+|...+.+...     .-++..++.|++++|--.. .+|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence            4778899999999999764           257999999999988887652     2356778899998887666 4677


Q ss_pred             EEEcccCcc------ce-----ecccC-----------cccccceEEe------------eCCccCEEEEEE--eCCEEE
Q 009373          224 CWRAVEVLP------HL-----FDISG-----------SEKQNTQFRL------------WEHEGPITSLAL--DLTRIY  267 (536)
Q Consensus       224 vwd~~~~~~------~~-----~~~~~-----------~~~~~~~~~~------------~~h~~~v~~l~~--~~~~l~  267 (536)
                      ||+...-..      .+     |....           .........+            .-|.-.=..+.|  +|++|+
T Consensus       330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc  409 (698)
T KOG2314|consen  330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC  409 (698)
T ss_pred             EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence            887643110      00     00000           0000000000            001111112333  455554


Q ss_pred             EEe----------cCCeEEEEeCCCce-EeEeeeccccEEEEe--ecCCEEEEec----CCcEEEEeCCC-C---cEEEE
Q 009373          268 SGS----------WDMTVRVWDRALLK-CLKVLRHSDWVYGLA--PHDTTVASTS----GSDVYIWDTNS-G---CLLTV  326 (536)
Q Consensus       268 s~s----------~dg~i~iwd~~~~~-~~~~~~~~~~v~~~~--~~~~~l~~~~----d~~i~i~d~~~-~---~~~~~  326 (536)
                      .--          .-..+-|+.++... ++..+.....|..++  |.|..+++-+    ..++.+|-+++ .   +.+..
T Consensus       410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~  489 (698)
T KOG2314|consen  410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE  489 (698)
T ss_pred             EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence            321          11123334333222 122233556666666  7787666544    36799998874 2   23333


Q ss_pred             EccccccceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC--
Q 009373          327 VNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD--  399 (536)
Q Consensus       327 ~~~~~~~~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d--  399 (536)
                      +   .....+.+.|+|.|++++.+.   ..|.+.++|+...      ....+-.......+.+.|+|  .|+++++.-  
T Consensus       490 ~---dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a------~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr  560 (698)
T KOG2314|consen  490 L---DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA------DLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR  560 (698)
T ss_pred             h---cccccceEEEcCCCcEEEEEEecccccceEEEecchh------hhhhccCccccccccceECCCCCEEEEeeehhh
Confidence            3   235677899999999988764   5788999998753      11111122233557788987  788888763  


Q ss_pred             ----CcEEEEECC
Q 009373          400 ----GKLSLIDVR  408 (536)
Q Consensus       400 ----g~i~vwd~~  408 (536)
                          .--++|++.
T Consensus       561 hk~d~GYri~tfq  573 (698)
T KOG2314|consen  561 HKVDNGYRIFTFQ  573 (698)
T ss_pred             hccccceEEEEee
Confidence                334556554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=3.9e-06  Score=83.49  Aligned_cols=182  Identities=14%  Similarity=0.117  Sum_probs=129.6

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  237 (536)
                      .+.++|++++  +++|+-|+.+|.|++.+....-  .+...|...    ..+|.++++|+.||+|.|-.+-+..      
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~------  104 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD------  104 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc----ccCCceEEEecCCCcEEEeeccCCc------
Confidence            4677888886  7899999999999999976432  222223222    5679999999999999998876542      


Q ss_pred             cCcccccceEEeeCCccCEEEEEEeC-------CEEEEEecCCeEEEEeCCC---ceEeEeeeccccEEEEeecCCEEEE
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLALDL-------TRIYSGSWDMTVRVWDRAL---LKCLKVLRHSDWVYGLAPHDTTVAS  307 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~v~~~~~~~~~l~~  307 (536)
                             .. .......++.++++++       +.+++|+.-| +.++.-+-   ...+..-...++|.++.+.|++++-
T Consensus       105 -------~~-~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAW  175 (846)
T KOG2066|consen  105 -------EI-TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAW  175 (846)
T ss_pred             -------cc-eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEE
Confidence                   11 1123456788888855       4689999888 77775431   1222112267899999999999999


Q ss_pred             ecCCcEEEEeCCCCcEEEEEcccccc-----ceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          308 TSGSDVYIWDTNSGCLLTVVNGAHVG-----NTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       308 ~~d~~i~i~d~~~~~~~~~~~~~~~~-----~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      ++|-.|++||+.+++.+..+...+..     -...+.|.++ ..|+.|-.| +|+|..++.+
T Consensus       176 and~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~v~i~~I~~~  235 (846)
T KOG2066|consen  176 ANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-SVKICSIKKR  235 (846)
T ss_pred             ecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-eEEEEEEecc
Confidence            99999999999999988887654422     1234667654 456666544 6999998833

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=6.4e-05  Score=73.97  Aligned_cols=188  Identities=12%  Similarity=0.008  Sum_probs=113.6

Q ss_pred             cEEEEEEecCCCE-EEEEeCC---CcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEE-EeCC--CcEEEEEcccCc
Q 009373          160 AVLTVFVLASAKL-LFTSGYD---SIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVA-GGTD--GFIHCWRAVEVL  231 (536)
Q Consensus       160 ~V~~v~~~~~~~~-l~sgs~d---g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s-g~~d--g~i~vwd~~~~~  231 (536)
                      .+..-.|+|||+. ++..+.+   ..|.++|+.+++...-.... ......++|||+.++. .+.+  ..|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            7788999999984 6544443   56899999888655433322 2234568899986654 3334  457777765542


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC--eEEEEeCCCceEeEeeeccccEEEEeecCCEEE
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM--TVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA  306 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~  306 (536)
                                    ...+..+.+......|  ||+.|+..+. .+  .|.+.|+.+++.............++|+|+.++
T Consensus       269 --------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia  334 (419)
T PRK04043        269 --------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIV  334 (419)
T ss_pred             --------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEE
Confidence                          2223233322223356  7777666553 23  678888887776443332222346779999887


Q ss_pred             Eec-C---------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-Cc--EEEEEcccC
Q 009373          307 STS-G---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-GA--IHMYEIIND  364 (536)
Q Consensus       307 ~~~-d---------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-g~--i~iwd~~~~  364 (536)
                      ... .         ..|.+.|+.++... .+..+  .......|+|||+.|+..+.+ +.  +.+.++...
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            665 2         25888899888653 33221  223357899999977665543 33  555555443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.49  E-value=4.4e-07  Score=55.99  Aligned_cols=38  Identities=29%  Similarity=0.551  Sum_probs=34.6

Q ss_pred             cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          322 CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      +++..+. +|.+.|++++|+|++.+|++|+.|+.|++||
T Consensus         2 ~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4566775 7999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.48  E-value=0.0002  Score=62.15  Aligned_cols=272  Identities=14%  Similarity=0.112  Sum_probs=133.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCC-CceEEEE-ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAV-AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  247 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~-~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  247 (536)
                      |++++.|.+.|.+++-+.++|.....+... ...+.+. .+++..+..|+.|++.+..|..+..             .+.
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-------------cVy  129 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-------------CVY  129 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc-------------eEE
Confidence            778999999999999999999777766443 2344443 4899999999999999999986642             333


Q ss_pred             EeeCCccCEEE--EEEeCCEEEEEecCCeEEEEeCCCc--eEeEeeeccccEEEE-eecCCEE-EEecCCcEEEEeCCCC
Q 009373          248 RLWEHEGPITS--LALDLTRIYSGSWDMTVRVWDRALL--KCLKVLRHSDWVYGL-APHDTTV-ASTSGSDVYIWDTNSG  321 (536)
Q Consensus       248 ~~~~h~~~v~~--l~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~v~~~-~~~~~~l-~~~~d~~i~i~d~~~~  321 (536)
                      ..+...+...+  ++.-+..|+.+...|.|.--..++.  ..+.......++.+- ..-+..+ .++-||.+.-+| ..|
T Consensus       130 kskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG  208 (354)
T KOG4649|consen  130 KSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESG  208 (354)
T ss_pred             ecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCC
Confidence            32221111111  2222344555555565554444433  222222223333321 1112222 233366666666 555


Q ss_pred             cEEEEEccccccceEEE-EE-eCCCCEEEEEcCCCc--------EEEEEcccCccccc-cceeeeccCCCCCeEEEEEcC
Q 009373          322 CLLTVVNGAHVGNTKSL-AR-SHTGDFLFTGGEDGA--------IHMYEIINDCTEAN-VLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       322 ~~~~~~~~~~~~~i~~l-~~-~~~~~~l~tg~~dg~--------i~iwd~~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~  390 (536)
                      +++.++.  ..++|..- +- .|..+.+..+.++..        --+|....+..... ..+-..+..|.-.+.    .+
T Consensus       209 ~qvwr~~--t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S----~~  282 (354)
T KOG4649|consen  209 RQVWRPA--TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGIS----YP  282 (354)
T ss_pred             cEEEeec--CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCc----ch
Confidence            5555442  33333210 11 133344444443332        23444444310000 000000111111110    04


Q ss_pred             CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          391 PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       391 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      .+|..++.||++.|--.+...... ...+..+..+...+-...++   +.++.    -+.+|+.|+.|..|+-||+.+.
T Consensus       283 ~ll~~~s~dgkv~il~~~~sl~~~-~s~~g~lq~~~~~el~~eIF---sSPvi----i~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  283 KLLRRSSGDGKVMILMTSKSLAEI-SSNGGELQNLEAIELSNEIF---SSPVI----IDGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             hhhhhhcCCCcEEEEEeccccccc-ccCCCccceEEEeecCcccc---cCCeE----EccEEEEEEccCeEEEEecccc
Confidence            678888999999887655432111 11222222222111111111   11111    1246888999999999999864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.46  E-value=4.3e-05  Score=75.26  Aligned_cols=156  Identities=17%  Similarity=0.160  Sum_probs=104.3

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC--CCCc-eEEEEecCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--PLGC-TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~-~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      ..|.--+++..+.+++.|+.-|.+.+|+-..++....-.  .+.. .+.+++++..++|.|+..|.|.++-+....+.- 
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-  112 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-  112 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-
Confidence            334444456678999999999999999988776554333  2333 334566888899999999999999876543211 


Q ss_pred             cccCcccccceEE-eeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc-----eEeEeeeccccEEEEeecCCEEEE
Q 009373          236 DISGSEKQNTQFR-LWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVAS  307 (536)
Q Consensus       236 ~~~~~~~~~~~~~-~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~  307 (536)
                             ...... -..|...|++++|  ++..+++|...|+|..-.+.+.     .....+.....|..+..-..++..
T Consensus       113 -------~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLV  185 (726)
T KOG3621|consen  113 -------LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLV  185 (726)
T ss_pred             -------ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehH
Confidence                   111111 1137889999999  7889999999999999888762     111222366778788855555555


Q ss_pred             ecCCcEEEEeCCCCc
Q 009373          308 TSGSDVYIWDTNSGC  322 (536)
Q Consensus       308 ~~d~~i~i~d~~~~~  322 (536)
                      ++-....+++++.+.
T Consensus       186 Stl~r~~Lc~tE~et  200 (726)
T KOG3621|consen  186 STLTRCILCQTEAET  200 (726)
T ss_pred             hhhhhhheeecchhH
Confidence            554445566665543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=6e-06  Score=80.93  Aligned_cols=204  Identities=9%  Similarity=0.132  Sum_probs=130.6

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccceec--ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEe
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD--ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd  279 (536)
                      ..+..+..+++.|+.||.++|..+.+.......  +........-.++.||.+.|.-+.|  +...|-+...+|.|.+|-
T Consensus        20 ~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWm   99 (1189)
T KOG2041|consen   20 AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWM   99 (1189)
T ss_pred             EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEe
Confidence            344467789999999999999998775432211  1122333445678899999999999  446788899999999998


Q ss_pred             CCCceEeEeee---ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373          280 RALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       280 ~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      +-.+.-.....   ..+.|.+++  .+|..+.... ||.|.+=.+..++....-.  .......+.|++|.+.++.+-.+
T Consensus       100 lykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~~~~Lf~~an  177 (1189)
T KOG2041|consen  100 LYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDLEQALFKKAN  177 (1189)
T ss_pred             eecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc--chheccceeecccHHHHHhhhcC
Confidence            76654332221   445566666  5666666666 7777666555443221110  11223467899999988888899


Q ss_pred             CcEEEEEcccCcccc-ccce----eeeccCCCCCeEEEEEc--------C--CeEEEEeCCCcEEEEECCc
Q 009373          354 GAIHMYEIINDCTEA-NVLL----VATWIPHTGPVNSLAFE--------F--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       354 g~i~iwd~~~~~~~~-~~~~----~~~~~~h~~~v~~l~~~--------~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      |.+.+||....-... ...+    ...+......|..+.|.        |  ..|+.+-.+|.+.+-.-.+
T Consensus       178 ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eN  248 (1189)
T KOG2041|consen  178 GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEN  248 (1189)
T ss_pred             CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcC
Confidence            999999976542110 0011    11122222346666662        1  5889999999888765443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.8e-05  Score=72.58  Aligned_cols=237  Identities=12%  Similarity=0.167  Sum_probs=138.8

Q ss_pred             eeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe---cCCCEEEEEeCCCcEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~---~~~~~l~sg~~dg~i~vwd  226 (536)
                      .+.+.+|...|..++|+|..+ ++..++.+..|+|.|+++..++..+..+ ..+++++   .+.++|+.|..+|.|.+||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            457778899999999999877 8889999999999999999888888776 4555444   3467899999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--------eCCEEEEEecCCeEEEEeCC----CceEeEeeecccc
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--------DLTRIYSGSWDMTVRVWDRA----LLKCLKVLRHSDW  294 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~~~~  294 (536)
                      ++.....+..+...-          ...+|..++.        .+..++..+.+  ...|++.    ...++..++..+.
T Consensus       265 ~R~~~~~~~e~~a~~----------t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~  332 (463)
T KOG1645|consen  265 MRQPEGPLMELVANV----------TINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI  332 (463)
T ss_pred             ccCCCchHhhhhhhh----------ccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence            987643222221111          2234444443        23334333332  3455442    2223333334555


Q ss_pred             EEEEeec--CCEEEEec--CC---cEE----EEeCCCCcEEEEEcccccc-ce------EEEEEeCCCCEE-EEEcCCCc
Q 009373          295 VYGLAPH--DTTVASTS--GS---DVY----IWDTNSGCLLTVVNGAHVG-NT------KSLARSHTGDFL-FTGGEDGA  355 (536)
Q Consensus       295 v~~~~~~--~~~l~~~~--d~---~i~----i~d~~~~~~~~~~~~~~~~-~i------~~l~~~~~~~~l-~tg~~dg~  355 (536)
                      +.+++.+  .+.++...  +.   +++    --|-.+|.++.....++.+ .-      .++.-.++.+++ .+|+..+.
T Consensus       333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~  412 (463)
T KOG1645|consen  333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE  412 (463)
T ss_pred             eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence            6666532  23333332  21   111    1233445544443333321 11      111112344444 45556678


Q ss_pred             EEEEEcccCccccccceeeeccCCCCCeEEEEEc---C-CeEEEEeCCCcEEEEECC
Q 009373          356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F-PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~-~~l~s~s~dg~i~vwd~~  408 (536)
                      +.+||+.+.      ..++++.- ..+|..+...   + .+|++-. |..++||..+
T Consensus       413 lil~D~~s~------evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  413 LILQDPHSF------EVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eEEeccchh------heeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            999999988      55555543 3788877763   2 4666554 4568887654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.3e-06  Score=79.23  Aligned_cols=265  Identities=14%  Similarity=0.134  Sum_probs=168.6

Q ss_pred             CCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC
Q 009373          198 PLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM  273 (536)
Q Consensus       198 ~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg  273 (536)
                      -|...|..+. ...+++++++.||.++.|.-..-          .....+..+..|.+.|.+++.  ++-.+.|.+. |.
T Consensus         7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~i----------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dh   76 (558)
T KOG0882|consen    7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRI----------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDH   76 (558)
T ss_pred             cccceeeeEeeehhheEEeeecchhhhhcCCCCc----------cceeehhhhHHHHHHHHhhhccccceeEeeccCccc
Confidence            3556666555 45679999999999999964221          112234445567788887776  7778888777 99


Q ss_pred             eEEEEeCCCceEeEeee---ccccEEEEeecC---CEEEEec--CCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC
Q 009373          274 TVRVWDRALLKCLKVLR---HSDWVYGLAPHD---TTVASTS--GSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG  344 (536)
Q Consensus       274 ~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~---~~l~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~  344 (536)
                      .++++|+.+...+..+.   .++.+..+...|   ..++++.  ++.+.++|-.... +...+..-|..+|..+.+.+.+
T Consensus        77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~  156 (558)
T KOG0882|consen   77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG  156 (558)
T ss_pred             ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence            99999998776654444   455555555333   2344444  6899999987654 4445555699999999999999


Q ss_pred             CEEEEEcCCCcEEEEEcccCcccc------cc---ceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccccc
Q 009373          345 DFLFTGGEDGAIHMYEIINDCTEA------NV---LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       345 ~~l~tg~~dg~i~iwd~~~~~~~~------~~---~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      ..+++....|.|.-|.....-..+      ++   .-+..+.-......++.|+|  ..+.+-+.|..|++++++++...
T Consensus       157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            999999999999999977311000      00   11122223455678888876  68888889999999999886544


Q ss_pred             CCCCCCCcee--------eEE--eeC---CCeeeecccc---ccEEEEEecCCEEEEecCCCeEEEEeCCchhhHH
Q 009373          414 GRPTSGKRVS--------RVI--EVE---PPQRMLHGFE---CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       414 ~~~~~~~~~~--------~~~--~~~---~~~~~~~~~~---~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      ..........        .+.  ++.   ...+.+..|.   ..-..++-++++|+-|+-=| |++.++.++..++
T Consensus       237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r  311 (558)
T KOG0882|consen  237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR  311 (558)
T ss_pred             hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence            3221110000        000  000   0001111122   22334556677888777666 8888888876544

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.41  E-value=8.4e-05  Score=73.62  Aligned_cols=198  Identities=12%  Similarity=0.005  Sum_probs=108.0

Q ss_pred             CCccCEEEEEE--eCCE--E-EEEecCC--eEEEEeCCCceEeEeeeccc--cEEEEeecCCEEEEecC--C--cE--EE
Q 009373          251 EHEGPITSLAL--DLTR--I-YSGSWDM--TVRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTSG--S--DV--YI  315 (536)
Q Consensus       251 ~h~~~v~~l~~--~~~~--l-~s~s~dg--~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~d--~--~i--~i  315 (536)
                      .....+.+-.|  ||+.  + ++...+|  .|.+.++.+++........+  ....++|+|+.|+...+  |  .+  ..
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            34445556677  5544  2 2444443  57777888776544433222  23356699988876652  3  33  44


Q ss_pred             EeCCCC--cEEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--
Q 009373          316 WDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--  390 (536)
Q Consensus       316 ~d~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--  390 (536)
                      |++..+  .....+..+..+.....+|+|||+.|+..+ .+|...+|.+......   .....+..+...+....|+|  
T Consensus       262 ~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        262 FSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---QSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             eecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---cceEEeccCCCCccceeECCCC
Confidence            677653  122233222333446789999999777655 4676666654321000   11233334445667788986  


Q ss_pred             CeEEEEeCC---CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCCEEE-Eec--CCCeEEE
Q 009373          391 PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGADRIV-CGG--EEGIVRI  463 (536)
Q Consensus       391 ~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~-sg~--~Dg~i~v  463 (536)
                      +.|+..+.+   ..|.+||+.++....                   ...+ .......++++++.|+ ++.  ..+.|++
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-------------------Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~  399 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQ-------------------LTTSPENKESPSWAIDSLHLVYSAGNSNESELYL  399 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEE-------------------ccCCCCCccceEECCCCCEEEEEECCCCCceEEE
Confidence            566655443   468999987642210                   0011 1122245666777555 333  2457888


Q ss_pred             EeCCchh
Q 009373          464 WNFSQAF  470 (536)
Q Consensus       464 W~~~~~~  470 (536)
                      |++.+++
T Consensus       400 vdl~~g~  406 (428)
T PRK01029        400 ISLITKK  406 (428)
T ss_pred             EECCCCC
Confidence            9988764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.35  E-value=0.00021  Score=63.13  Aligned_cols=188  Identities=14%  Similarity=0.093  Sum_probs=103.6

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC-------CceEEEEe---cC-----CCEEEEEeCCCcEE
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-------GCTIRAVA---AD-----KKLLVAGGTDGFIH  223 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-------~~~v~~~~---~~-----~~~l~sg~~dg~i~  223 (536)
                      -.=+-++|+||+.+||.+...|+|++||+... .+..+.+.       ...|..+.   ..     ...|++-..+|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            34467899999999999999999999998753 33333221       12232222   11     22566677777777


Q ss_pred             EEEcccCccceecccCcccccceEEeeCC-ccCEEEEEEeC--CEEEEEecCCe-EEEEeCCCceEeEeeeccccEEEEe
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLALDL--TRIYSGSWDMT-VRVWDRALLKCLKVLRHSDWVYGLA  299 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~--~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~v~~~~  299 (536)
                      -|-+..+...      .-.....+.+..| ...|.++.+++  +.|+.|+.... -..+.          .....+++..
T Consensus       123 Sy~vs~gt~q------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~----------a~~~GLtaWR  186 (282)
T PF15492_consen  123 SYLVSVGTNQ------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK----------ASSCGLTAWR  186 (282)
T ss_pred             eEEEEcccCC------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc----------ccccCceEEE
Confidence            7765332100      0111223334333 67899999954  45555553221 00000          0011111111


Q ss_pred             -----ecCCEEEEecCC------cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          300 -----PHDTTVASTSGS------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       300 -----~~~~~l~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                           |.-+.+....++      +-.+|.+-+.+.... .......|..+..+|||..||+...+|.|.+|++..-
T Consensus       187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             EcCCCCcEEEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence                 222221211111      112333332222111 1235678999999999999999999999999999876

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.4e-05  Score=74.24  Aligned_cols=216  Identities=13%  Similarity=0.098  Sum_probs=136.6

Q ss_pred             CccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCc
Q 009373          252 HEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGC  322 (536)
Q Consensus       252 h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~  322 (536)
                      |.+.|+.+.. ..+++++++.||.++.|--..-.-+....    |...+.++.  .++.++.+.+  |..++++|+.+-.
T Consensus         8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D   87 (558)
T KOG0882|consen    8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD   87 (558)
T ss_pred             ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence            7777877766 67899999999999999754322222222    666666554  7777888755  6899999998765


Q ss_pred             EEEEEccccccceEEEEEeC-CC---CEEEEE-cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEE
Q 009373          323 LLTVVNGAHVGNTKSLARSH-TG---DFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS  395 (536)
Q Consensus       323 ~~~~~~~~~~~~i~~l~~~~-~~---~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s  395 (536)
                      .+..++..  .....+.|.. .|   ..++++ -.+|.+.|+|-.....    .....-.-|..+|..+.+.+  +.+++
T Consensus        88 minmiKL~--~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   88 MINMIKLV--DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             hhhhcccc--cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCceEEEEeeccccceee
Confidence            55433211  1111222222 22   134443 4578999999776632    23344456999999999976  77888


Q ss_pred             EeCCCcEEEEECCc-ccccCCC--CCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          396 AAGDGKLSLIDVRK-LLRSGRP--TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       396 ~s~dg~i~vwd~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ....|.|.-|.... .+.+...  ..-+....+..+..     .......+.+++++..+.+-+.|..|+++++.+|..+
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-----~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-----AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccc-----cccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            88889999999873 1111110  00000111111111     1122345677777889999999999999999999988


Q ss_pred             HHHHHh
Q 009373          473 ERRARA  478 (536)
Q Consensus       473 ~~~~~~  478 (536)
                      +.....
T Consensus       237 qeiDE~  242 (558)
T KOG0882|consen  237 QEIDEV  242 (558)
T ss_pred             hhhhcc
Confidence            766443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=0.00077  Score=58.64  Aligned_cols=218  Identities=16%  Similarity=0.138  Sum_probs=123.8

Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccc
Q 009373          166 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ  243 (536)
Q Consensus       166 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  243 (536)
                      ..+++.++..|+.|++...-|..+..++...+-.+....  ++.+....|+.+...|.+.--+..+.             
T Consensus       101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~-------------  167 (354)
T KOG4649|consen  101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY-------------  167 (354)
T ss_pred             EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC-------------
Confidence            456789999999999999999999988887655443322  33454556666677776655544332             


Q ss_pred             cceEEeeCC--ccCEEEE-EEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEE---Ee-ecCCEEEEecCC-----
Q 009373          244 NTQFRLWEH--EGPITSL-ALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG---LA-PHDTTVASTSGS-----  311 (536)
Q Consensus       244 ~~~~~~~~h--~~~v~~l-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~---~~-~~~~~l~~~~d~-----  311 (536)
                       ....+..|  .++|.+- .+-+..+..+.-||.+.-+| ..|+.+..+...++|..   .+ |..+.+..+..+     
T Consensus       168 -~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~  245 (354)
T KOG4649|consen  168 -SSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAP  245 (354)
T ss_pred             -CcceehhhhcCCccccCceeccceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEe
Confidence             11222222  2344332 22344555566777777777 56666666655555542   22 333444444433     


Q ss_pred             ----cEEEEeCCCCcEEEEEccccccceEEEEEe-C---CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          312 ----DVYIWDTNSGCLLTVVNGAHVGNTKSLARS-H---TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       312 ----~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~-~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                          .-.+|..++|.....+...    -...+++ |   ..++|..++.||.+.|.-.+..        +.....|.+.+
T Consensus       246 ~p~~ghL~w~~~~g~t~~vy~~p----~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s--------l~~~~s~~g~l  313 (354)
T KOG4649|consen  246 LPIAGHLLWATQSGTTLHVYLSP----KLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS--------LAEISSNGGEL  313 (354)
T ss_pred             ccccceEEEEecCCcEEEEEeCc----ccceeccCCCCcchhhhhhhcCCCcEEEEEeccc--------ccccccCCCcc
Confidence                3345555555333332110    0011111 1   1356778889998877754332        33333444433


Q ss_pred             EEEE--------E-cC----CeEEEEeCCCcEEEEECCcc
Q 009373          384 NSLA--------F-EF----PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       384 ~~l~--------~-~~----~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ..+.        | +|    ..|+.|+.|..++-||+.+.
T Consensus       314 q~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  314 QNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             ceEEEeecCcccccCCeEEccEEEEEEccCeEEEEecccc
Confidence            3322        2 23    68999999999999999763

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.27  E-value=6e-07  Score=89.76  Aligned_cols=188  Identities=10%  Similarity=0.118  Sum_probs=129.9

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec--CCCEEEEEeCCC--cEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA--DKKLLVAGGTDG--FIHCW  225 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~dg--~i~vw  225 (536)
                      ..++++.|+...+|++|+-+.++|+.|+..|.|++|++.+|........|+.+++-+.|  +|..+++.+...  ...+|
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            35688999999999999999999999999999999999999999999999999998875  566666554433  46788


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCCceEeEeee-------ccccEE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVY  296 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~v~  296 (536)
                      ++.+.            ......+    ..-.++.|..  ..-+.|..-..+.+||+.++..+.++-       ......
T Consensus      1173 ~~~s~------------~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1173 DASST------------GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred             ccccc------------cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence            87442            1122222    2334566622  222334444678899999988776632       112222


Q ss_pred             EEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          297 GLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       297 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .++|...+++--  |  .+||++..+.+..|.. .. .--.-.|+|.|.-++..+     .|||+++-
T Consensus      1237 ~FsP~D~LIlnd--G--vLWDvR~~~aIh~FD~-ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1237 HFSPCDTLILND--G--VLWDVRIPEAIHRFDQ-FT-DYGGGGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred             ccCCCcceEeeC--c--eeeeeccHHHHhhhhh-he-ecccccccCCCceEEeec-----hhhhhHHH
Confidence            344666655432  2  5799998877777642 22 112335999999888875     48999987

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=98.27  E-value=4.5e-07  Score=80.42  Aligned_cols=76  Identities=25%  Similarity=0.357  Sum_probs=59.1

Q ss_pred             ccCCcHHHHHHHhcC-----CChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCC-CCCCCCCCCchhhhhh
Q 009373           64 ITDLPPALISEILNC-----LDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPL-GAGFSDDKSWKELFVE  137 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~-----L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~-~~~~~~~~~Wk~~~~~  137 (536)
                      |..||+|+++.||..     ||.++|.++++|||.|+..++++.+|+..|.+.|+........ .........|+.++.+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            678999999999976     7889999999999999999999999999888999754332211 1113335678887776


Q ss_pred             hh
Q 009373          138 RE  139 (536)
Q Consensus       138 ~~  139 (536)
                      |-
T Consensus       187 Rp  188 (366)
T KOG2997|consen  187 RP  188 (366)
T ss_pred             Cc
Confidence            43

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.00012  Score=73.92  Aligned_cols=194  Identities=15%  Similarity=0.143  Sum_probs=124.3

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCce-EEEEe--cCCCEEEEEeCCC-----cEEEEEcccCc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVA--ADKKLLVAGGTDG-----FIHCWRAVEVL  231 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~--~~~~~l~sg~~dg-----~i~vwd~~~~~  231 (536)
                      .|.|  +++.+..++.|+.+|.|.+.+- .-+.+..++.+... +..+.  ....+|++.+.|+     .+++|+++.-.
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            6665  5778889999999999887772 23344667766665 33333  2335777777664     48999986542


Q ss_pred             cceecccCcccccce--EEeeC-----CccCEEEEEE--eCCEEEEEecCCeEEEEeCC--C--c-eEeEeeeccccEEE
Q 009373          232 PHLFDISGSEKQNTQ--FRLWE-----HEGPITSLAL--DLTRIYSGSWDMTVRVWDRA--L--L-KCLKVLRHSDWVYG  297 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~--~~~~~-----h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~--~--~-~~~~~~~~~~~v~~  297 (536)
                      .       .....+.  ....+     ...++.+++.  +-..++.|-.||.|..+.-+  .  + +.........+|+.
T Consensus       104 ~-------n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITg  176 (933)
T KOG2114|consen  104 K-------NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITG  176 (933)
T ss_pred             C-------CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCcee
Confidence            1       0101111  12222     2456777777  55788999999999998421  1  1 11112226678998


Q ss_pred             Ee--ecCCE-EEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          298 LA--PHDTT-VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       298 ~~--~~~~~-l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +.  .++.. +++++...|.+|.+....+.......|....+|..+++....+++++.. .+.+||....
T Consensus       177 L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~  245 (933)
T KOG2114|consen  177 LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGR  245 (933)
T ss_pred             eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCc
Confidence            87  44544 6666778899999984443334334688899999998866645555443 5999998765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.0005  Score=69.55  Aligned_cols=189  Identities=13%  Similarity=0.138  Sum_probs=122.2

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccC-EEEEEE-eC-CEEEEEecCC-----
Q 009373          202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP-ITSLAL-DL-TRIYSGSWDM-----  273 (536)
Q Consensus       202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~-~~-~~l~s~s~dg-----  273 (536)
                      .+.++++.+..++.|+.+|.|.+.+-.              ......+..+... |..+.. ++ +.|++.+.|+     
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln~s--------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~   92 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILNSS--------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV   92 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEeccc--------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence            788889999999999999999888731              2233455566655 555544 33 5788877765     


Q ss_pred             eEEEEeCCC------ceEe---Eeee-----ccccEEEE--eecCCEEEEec-CCcEEEEeCC--CCc-EEEEEcccccc
Q 009373          274 TVRVWDRAL------LKCL---KVLR-----HSDWVYGL--APHDTTVASTS-GSDVYIWDTN--SGC-LLTVVNGAHVG  333 (536)
Q Consensus       274 ~i~iwd~~~------~~~~---~~~~-----~~~~v~~~--~~~~~~l~~~~-d~~i~i~d~~--~~~-~~~~~~~~~~~  333 (536)
                      .++|||++.      ..++   ..+.     .+.++.++  +.+-+.+|+|- +|.|..+.-.  ..+ ....+......
T Consensus        93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~  172 (933)
T KOG2114|consen   93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKE  172 (933)
T ss_pred             EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCC
Confidence            489999863      3344   2222     12334444  46677788887 8888888421  111 11222223566


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-Ce-EEEEeCCCcEEEEECCcc
Q 009373          334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PW-LVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~-l~s~s~dg~i~vwd~~~~  410 (536)
                      +|+.+.+..++..++-...-..|.+|.+....     .....+..|..+++|..+++ .. +++++ +..+.+||....
T Consensus       173 pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~  245 (933)
T KOG2114|consen  173 PITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR  245 (933)
T ss_pred             CceeeEEecCCceeEEEEecceeEEEEecCCC-----cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence            99999999988873333344569999998441     23455778888999999975 33 44444 346999998753

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.20  E-value=0.0026  Score=64.68  Aligned_cols=186  Identities=13%  Similarity=0.041  Sum_probs=113.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEE----------EEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIR----------AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~----------~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..|+.++.++.|.-.|..+|+.+..+..... .+.          .+...+..++.++.|+.+...|..+++..-..  
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~--  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK--  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec--
Confidence            55777788889999999999998887643211 111          11234567888899999999999888632110  


Q ss_pred             CcccccceEEeeCCc--cCEEE-EEEeCCEEEEEec------CCeEEEEeCCCceEeEeee--ccc--------------
Q 009373          239 GSEKQNTQFRLWEHE--GPITS-LALDLTRIYSGSW------DMTVRVWDRALLKCLKVLR--HSD--------------  293 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~--~~~--------------  293 (536)
                               ....+.  ..+++ -...++.++.+..      +|.|..+|.++|+.+..+.  ...              
T Consensus       147 ---------~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~  217 (527)
T TIGR03075       147 ---------KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGE  217 (527)
T ss_pred             ---------ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccc
Confidence                     000111  11211 1223445655543      6899999999999887765  111              


Q ss_pred             ----------------cE---EEEeecCCEEEEec-C-----C-----------cEEEEeCCCCcEEEEEccc-ccc---
Q 009373          294 ----------------WV---YGLAPHDTTVASTS-G-----S-----------DVYIWDTNSGCLLTVVNGA-HVG---  333 (536)
Q Consensus       294 ----------------~v---~~~~~~~~~l~~~~-d-----~-----------~i~i~d~~~~~~~~~~~~~-~~~---  333 (536)
                                      .+   .++.+...++..+. +     +           +|.-.|+++|+..-.+... |..   
T Consensus       218 ~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~  297 (527)
T TIGR03075       218 PGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY  297 (527)
T ss_pred             cccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence                            01   13334444554443 1     1           5777899999988776532 211   


Q ss_pred             ----ceEEEEEeCCCC---EEEEEcCCCcEEEEEcccCcc
Q 009373          334 ----NTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       334 ----~i~~l~~~~~~~---~l~tg~~dg~i~iwd~~~~~~  366 (536)
                          ...-+....+|+   .++.+..+|.+++.|-.+++.
T Consensus       298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  337 (527)
T TIGR03075       298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL  337 (527)
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence                112222334665   788999999999999988854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.17  E-value=0.0033  Score=67.96  Aligned_cols=238  Identities=13%  Similarity=0.057  Sum_probs=139.9

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECC-------------CC----------ceeeeeCCC-------------
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-------------DG----------FSIASSKPL-------------  199 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~-------------~~----------~~~~~~~~~-------------  199 (536)
                      .-..+|.+++||||+.+|+..+.++++.+-+-.             -|          +.-..|+|.             
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            346789999999999999999999988776421             00          111111110             


Q ss_pred             -------------CceEEEEecCCCEEEEEeC---C---CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEE
Q 009373          200 -------------GCTIRAVAADKKLLVAGGT---D---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA  260 (536)
Q Consensus       200 -------------~~~v~~~~~~~~~l~sg~~---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  260 (536)
                                   ...-.++..||.++++.+.   .   ..++||+-+ |.             ....-..-.+--.+++
T Consensus       198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-------------L~stSE~v~gLe~~l~  263 (928)
T PF04762_consen  198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-------------LQSTSEPVDGLEGALS  263 (928)
T ss_pred             CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-------------EEeccccCCCccCCcc
Confidence                         1122344578899998875   2   468888754 21             1111111122233567


Q ss_pred             E--eCCEEEEEec---CCeEEEEeCCCceEeEeee-----ccccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEE--EE
Q 009373          261 L--DLTRIYSGSW---DMTVRVWDRALLKCLKVLR-----HSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLL--TV  326 (536)
Q Consensus       261 ~--~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~--~~  326 (536)
                      |  .|+.+++.-.   ...|.+|.- +|-....|.     ....|..+.  +++..|+......|.+|-..+-...  +.
T Consensus       264 WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqe  342 (928)
T PF04762_consen  264 WRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQE  342 (928)
T ss_pred             CCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEE
Confidence            7  6777777654   345666664 333333333     345677776  7788888877767999988775422  22


Q ss_pred             EccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEccc----Ccc--c------------------------cccceeee
Q 009373          327 VNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIIN----DCT--E------------------------ANVLLVAT  375 (536)
Q Consensus       327 ~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~----~~~--~------------------------~~~~~~~~  375 (536)
                      +.......+..+.|+|.. ..|...+.+|.+..+++.-    ...  .                        +.+-....
T Consensus       343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~  422 (928)
T PF04762_consen  343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE  422 (928)
T ss_pred             EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence            221233345558899854 4566666667766655421    100  0                        00001111


Q ss_pred             ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          376 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       376 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      + .-..+|.+++|++  ..+++-..||.|.+|....
T Consensus       423 l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  423 L-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             E-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence            1 1356899999976  3499999999999998654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.16  E-value=0.0014  Score=66.39  Aligned_cols=232  Identities=16%  Similarity=0.187  Sum_probs=133.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeCCCCce-----EE-EEecCCCEEEEEe---------CCCcEEEEEcccCcccee
Q 009373          171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----IR-AVAADKKLLVAGG---------TDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~  235 (536)
                      ..++.++.++.|.-+|.++|+.+.........     +. .....+..++.++         .+|.+..+|..+++..- 
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W-  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW-  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee-
Confidence            67888889999999999999998877543220     11 1112235566654         36788999998886322 


Q ss_pred             cccCcccccceEE-------eeCCc-cCEE-EEEE--eCCEEEEEecCC------------------eEEEEeCCCceEe
Q 009373          236 DISGSEKQNTQFR-------LWEHE-GPIT-SLAL--DLTRIYSGSWDM------------------TVRVWDRALLKCL  286 (536)
Q Consensus       236 ~~~~~~~~~~~~~-------~~~h~-~~v~-~l~~--~~~~l~s~s~dg------------------~i~iwd~~~~~~~  286 (536)
                      .............       ...+. ..|. +.++  .++.++.++.++                  .|.-+|..+++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            1111000000000       00111 1121 2333  356777777665                  7999999999999


Q ss_pred             Eeeecc---cc---------EEEEe-ecCC---EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE
Q 009373          287 KVLRHS---DW---------VYGLA-PHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT  349 (536)
Q Consensus       287 ~~~~~~---~~---------v~~~~-~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t  349 (536)
                      ..++..   ..         +..+. -++.   .++.++ +|.+..+|.++|+.+-.....    ...+..+|  ..++.
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv  343 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYL  343 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEE
Confidence            887621   11         11111 1232   455555 899999999999988776421    11223333  22332


Q ss_pred             E------------------cCCCcEEEEEcccCccccccceeeeccCC--C------CCe--EEEEEcCCeEEEEeCCCc
Q 009373          350 G------------------GEDGAIHMYEIINDCTEANVLLVATWIPH--T------GPV--NSLAFEFPWLVSAAGDGK  401 (536)
Q Consensus       350 g------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~------~~v--~~l~~~~~~l~s~s~dg~  401 (536)
                      +                  ..+|.+.-.|+.+++.      +-.....  .      .+.  ..+...++.|+.++.||.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~------~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~  417 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV------VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY  417 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEEEEEeCCCCcE------eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe
Confidence            2                  2356787888877732      2211111  0      111  234556789999999999


Q ss_pred             EEEEECCcccccCC
Q 009373          402 LSLIDVRKLLRSGR  415 (536)
Q Consensus       402 i~vwd~~~~~~~~~  415 (536)
                      |+.+|.++++..++
T Consensus       418 l~ald~~tG~~lW~  431 (488)
T cd00216         418 FRAFDATTGKELWK  431 (488)
T ss_pred             EEEEECCCCceeeE
Confidence            99999999766554

The alignment model contains an 8-bladed beta-propeller.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.10  E-value=0.0077  Score=55.06  Aligned_cols=183  Identities=20%  Similarity=0.179  Sum_probs=113.1

Q ss_pred             Eec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC
Q 009373          206 VAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL  282 (536)
Q Consensus       206 ~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~  282 (536)
                      +.+ ++.++++--..+.|..|+..++..              ..+... . ...+++  .++.++.+..++ +.++|..+
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------~~~~~~-~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~   69 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEV--------------EVIDLP-G-PNGMAFDRPDGRLYVADSGG-IAVVDPDT   69 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEE--------------EEEESS-S-EEEEEEECTTSEEEEEETTC-EEEEETTT
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeE--------------EEEecC-C-CceEEEEccCCEEEEEEcCc-eEEEecCC
Confidence            344 556666666788899998866531              111111 2 555566  356777777655 45559988


Q ss_pred             ceEeEeeec------cccEEEEe--ecCCEEEEecC---------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC
Q 009373          283 LKCLKVLRH------SDWVYGLA--PHDTTVASTSG---------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  345 (536)
Q Consensus       283 ~~~~~~~~~------~~~v~~~~--~~~~~l~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~  345 (536)
                      ++.......      ....+.+.  ++|++.++...         +.+..++.. ++.....  ......+.++|+|+++
T Consensus        70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~--~~~~~pNGi~~s~dg~  146 (246)
T PF08450_consen   70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA--DGLGFPNGIAFSPDGK  146 (246)
T ss_dssp             TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE--EEESSEEEEEEETTSS
T ss_pred             CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe--cCcccccceEECCcch
Confidence            866554442      23344444  88887777652         347777777 5543333  2456688999999998


Q ss_pred             EEE-EEcCCCcEEEEEcccCcc-ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          346 FLF-TGGEDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       346 ~l~-tg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      .|+ +-+..+.|..|++..... ......+..+....+..-.++++.  ++.++....+.|.++|.+
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence            665 667788899999875432 112223333333334578899974  555555678899999976

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.06  E-value=0.0021  Score=58.72  Aligned_cols=192  Identities=22%  Similarity=0.304  Sum_probs=111.6

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeC-----CCcEEEEECC-CCceeeeeCCCCceE--EEEecCCCEEEEEeC----
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGY-----DSIVRMWHLE-DGFSIASSKPLGCTI--RAVAADKKLLVAGGT----  218 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~-----dg~v~iwd~~-~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~----  218 (536)
                      -+.|.||      -.|++||++|+|.-.     .|.|-|||.. +-+.+..+..+...-  +.+.||+..|+++-.    
T Consensus        49 gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T  122 (305)
T PF07433_consen   49 GRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET  122 (305)
T ss_pred             CCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence            4678888      359999999998644     5889999998 556777776655433  234688877776532    


Q ss_pred             ---CCcEEEEEcccCccceecc-cCcccccceEEe--eCCccCEEEEEEeC-CEEEEEe-cCC-------eEEEEeCCCc
Q 009373          219 ---DGFIHCWRAVEVLPHLFDI-SGSEKQNTQFRL--WEHEGPITSLALDL-TRIYSGS-WDM-------TVRVWDRALL  283 (536)
Q Consensus       219 ---dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~--~~h~~~v~~l~~~~-~~l~s~s-~dg-------~i~iwd~~~~  283 (536)
                         .|..++ |+.+..+.+.-+ ...........+  ..|..+|..+++++ ..++.|. ..|       -|-+++..  
T Consensus       123 hpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--  199 (305)
T PF07433_consen  123 HPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--  199 (305)
T ss_pred             CcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--
Confidence               133322 333333332222 111112223334  34777888888833 2333332 222       23333322  


Q ss_pred             eEeEeee--------ccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373          284 KCLKVLR--------HSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       284 ~~~~~~~--------~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                      +.+..+.        ...++-+|+  .++..+++++  .+.+.+||..+++.+....   -..+..++..+++ ++++. 
T Consensus       200 ~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ss-  274 (305)
T PF07433_consen  200 GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSS-  274 (305)
T ss_pred             CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeC-
Confidence            2222222        345677777  5677887777  7899999999999887763   3446667666666 55544 


Q ss_pred             CCCcE
Q 009373          352 EDGAI  356 (536)
Q Consensus       352 ~dg~i  356 (536)
                      ..|.+
T Consensus       275 G~G~~  279 (305)
T PF07433_consen  275 GQGQL  279 (305)
T ss_pred             CCccE
Confidence            44543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.05  E-value=0.003  Score=56.06  Aligned_cols=99  Identities=18%  Similarity=0.078  Sum_probs=64.6

Q ss_pred             cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--------ccccEEEEe---------ecCCEEEEecCCcEE
Q 009373          254 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGLA---------PHDTTVASTSGSDVY  314 (536)
Q Consensus       254 ~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~---------~~~~~l~~~~d~~i~  314 (536)
                      ..-..++|  |+..|+.+...|+|++||+..... ..+.        ....|..+.         ...++++....|.++
T Consensus        44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             chheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            34567788  778999999999999999875333 3332        123344332         233567777788777


Q ss_pred             EEeCCCC-----cEEE--EEccccccceEEEEEeCCCCEEEEEcCC
Q 009373          315 IWDTNSG-----CLLT--VVNGAHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       315 i~d~~~~-----~~~~--~~~~~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      -|-+..+     +...  .+...+...|.++.++|..++|++|+..
T Consensus       123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~  168 (282)
T PF15492_consen  123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCE  168 (282)
T ss_pred             eEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccC
Confidence            7665322     2222  2333457799999999998888877654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.01  E-value=0.0069  Score=57.86  Aligned_cols=216  Identities=16%  Similarity=0.158  Sum_probs=123.8

Q ss_pred             cEEEEECCCCceeeeeCC-CCceEEEEe----c-----CCCEEEEEeC----------CCcEEEEEcccCccceecccCc
Q 009373          181 IVRMWHLEDGFSIASSKP-LGCTIRAVA----A-----DKKLLVAGGT----------DGFIHCWRAVEVLPHLFDISGS  240 (536)
Q Consensus       181 ~v~iwd~~~~~~~~~~~~-~~~~v~~~~----~-----~~~~l~sg~~----------dg~i~vwd~~~~~~~~~~~~~~  240 (536)
                      .|++.|..+.+.+.++.- ....+.++.    .     ...+|++|..          .|.|.++++.....      ..
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------~~   76 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------NN   76 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc------cc
Confidence            577888777776655422 122333332    1     1457777753          28899999876300      00


Q ss_pred             ccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCce-EeEeee--ccccEEEEeecCCEEEEec-CCcEEEE
Q 009373          241 EKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR--HSDWVYGLAPHDTTVASTS-GSDVYIW  316 (536)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~l~~~~-d~~i~i~  316 (536)
                      ...... .-....++|++++.-+++|+.+. .+.|.+|++...+ ....-.  ....+.++...+++++.|. -..+.++
T Consensus        77 ~~l~~i-~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~  154 (321)
T PF03178_consen   77 FKLKLI-HSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLL  154 (321)
T ss_dssp             -EEEEE-EEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEE
T ss_pred             eEEEEE-EEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEE
Confidence            011111 22345789999998555555444 5899999998777 443333  4557888888788888887 6777766


Q ss_pred             --eCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc----c-ccceeeeccCCCCCeEEE---
Q 009373          317 --DTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE----A-NVLLVATWIPHTGPVNSL---  386 (536)
Q Consensus       317 --d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~----~-~~~~~~~~~~h~~~v~~l---  386 (536)
                        +....+....-.......++++.+-++++.++++..+|.+.++........    . .+.....+. ....|+++   
T Consensus       155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~  233 (321)
T PF03178_consen  155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRG  233 (321)
T ss_dssp             EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE-
T ss_pred             EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEE
Confidence              442222222222234557889999877779999999999999998642111    1 112222222 24567777   


Q ss_pred             EEcC----------CeEEEEeCCCcEEEE
Q 009373          387 AFEF----------PWLVSAAGDGKLSLI  405 (536)
Q Consensus       387 ~~~~----------~~l~s~s~dg~i~vw  405 (536)
                      .+.+          ..++.++.+|.|.+.
T Consensus       234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  234 SLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             -SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EeeecCCCCcccccceEEEEecCCEEEEE
Confidence            3322          148888889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.01  E-value=0.013  Score=54.66  Aligned_cols=228  Identities=14%  Similarity=0.146  Sum_probs=130.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCC-ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCc-cccc
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDG-FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS-EKQN  244 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~  244 (536)
                      .++.|+.|..+| +.++++... ..........  |..+.  ++-+.+++-+ |+.+.++++..-.......... ....
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~--I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS--ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeecce--EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            578899999998 899998333 2222222222  55554  5555555544 4999999986643211100000 0000


Q ss_pred             ceEEeeCCccCEEEEE----EeCCEEEEEecCCeEEEEeCCCc-----eEeEeeeccccEEEEeecCCEEEEecCCcEEE
Q 009373          245 TQFRLWEHEGPITSLA----LDLTRIYSGSWDMTVRVWDRALL-----KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYI  315 (536)
Q Consensus       245 ~~~~~~~h~~~v~~l~----~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i  315 (536)
                      ...........+..++    ..+...+.....+.|.+|.....     +..+.+...+.+.++...++.++.+......+
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~  161 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYL  161 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEE
Confidence            0001112334455555    13444455555669998877543     45566667888999998899999998888999


Q ss_pred             EeCCCCcEEEEEcccc-----------ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          316 WDTNSGCLLTVVNGAH-----------VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~-----------~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      .|+.++.....+....           ..++..+.. +++.+|++-  |..-.+.|..... ..  .....+   ...+.
T Consensus       162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~-~r--~~~i~W---~~~p~  232 (275)
T PF00780_consen  162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEP-SR--KSTIQW---SSAPQ  232 (275)
T ss_pred             EecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCc-Cc--ccEEEc---CCchh
Confidence            9999876554432111           112333333 345666543  3333444543321 10  112222   23567


Q ss_pred             EEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373          385 SLAFEFPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       385 ~l~~~~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ++++...+|++.+.++ |.||++.++
T Consensus       233 ~~~~~~pyli~~~~~~-iEV~~~~~~  257 (275)
T PF00780_consen  233 SVAYSSPYLIAFSSNS-IEVRSLETG  257 (275)
T ss_pred             EEEEECCEEEEECCCE-EEEEECcCC
Confidence            7888878888877755 999999985

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.00041  Score=63.97  Aligned_cols=153  Identities=18%  Similarity=0.054  Sum_probs=92.8

Q ss_pred             EEEEECCCCceeeeeCCCCceEEEEe--cCCC-EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEE
Q 009373          182 VRMWHLEDGFSIASSKPLGCTIRAVA--ADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS  258 (536)
Q Consensus       182 v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  258 (536)
                      |++.+..+.+....+..++..|..++  |..+ ++..++.+..|+|.|+++..             ....+..+ ..+.+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-------------~vssy~a~-~~~wS  240 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-------------VVSSYIAY-NQIWS  240 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-------------eeeheecc-CCcee
Confidence            56666555555555566666676554  5544 88999999999999997742             44455556 78999


Q ss_pred             EEE---eCCEEEEEecCCeEEEEeCCCceEeE-eee---ccccEEEEe--------ecCCEEEEecCCcEEEEeCCC--C
Q 009373          259 LAL---DLTRIYSGSWDMTVRVWDRALLKCLK-VLR---HSDWVYGLA--------PHDTTVASTSGSDVYIWDTNS--G  321 (536)
Q Consensus       259 l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~---~~~~v~~~~--------~~~~~l~~~~d~~i~i~d~~~--~  321 (536)
                      ++|   +.++++.|...|.|.+||++..+-.. .+.   ...+|..++        +.+.+++... -.+..|.+..  +
T Consensus       241 C~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~  319 (463)
T KOG1645|consen  241 CCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAE  319 (463)
T ss_pred             eeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhcccc
Confidence            999   45789999999999999998654322 121   334455544        2233333322 2344454432  2


Q ss_pred             cEEEEEccccccceEEEEEeCCCCEEEE
Q 009373          322 CLLTVVNGAHVGNTKSLARSHTGDFLFT  349 (536)
Q Consensus       322 ~~~~~~~~~~~~~i~~l~~~~~~~~l~t  349 (536)
                      ........+..+...++.+++..+.++.
T Consensus       320 ~~p~vlele~pG~cismqy~~~snh~l~  347 (463)
T KOG1645|consen  320 CLPCVLELEPPGICISMQYHGVSNHLLL  347 (463)
T ss_pred             CCCcccccCCCcceeeeeecCccceEEE
Confidence            2222222234566667777765554443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.99  E-value=0.0024  Score=62.79  Aligned_cols=226  Identities=12%  Similarity=0.092  Sum_probs=114.9

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeC
Q 009373          202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~  280 (536)
                      ..++.+|+|+.+++ ..||.-.++.....               ...   ..+.-...+| ..+.+++-...++|.++.-
T Consensus        36 ~~ls~npngr~v~V-~g~geY~iyt~~~~---------------r~k---~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   36 QSLSHNPNGRFVLV-CGDGEYEIYTALAW---------------RNK---AFGSGLSFVWSSRNRYAVLESSSTIKIYKN   96 (443)
T ss_dssp             SEEEE-TTSSEEEE-EETTEEEEEETTTT---------------EEE---EEEE-SEEEE-TSSEEEEE-TTS-EEEEET
T ss_pred             eeEEECCCCCEEEE-EcCCEEEEEEccCC---------------ccc---ccCceeEEEEecCccEEEEECCCeEEEEEc
Confidence            34556688888888 55667767763211               111   1234445667 5577888888899999743


Q ss_pred             CCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          281 ALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       281 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      -+.+....+..+..+..+-. |.+|...+++.|.+||..+++.++.+.  . ..|..+.|+++|.+++..+.+ .+.|++
T Consensus        97 ~~~~~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~--v-~~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen   97 FKNEVVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRID--V-SAVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             TEE-TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CccccceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEe--c-CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            23333334443333444444 888888888899999999999999984  2 248999999999999988766 577776


Q ss_pred             cccCc----cccccc-eeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee
Q 009373          361 IINDC----TEANVL-LVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  435 (536)
Q Consensus       361 ~~~~~----~~~~~~-~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (536)
                      .....    ...... .+.....-...|.+..|.++.++-.+.. .|+.+-  .+          ....+..+.      
T Consensus       172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~--~G----------e~~~i~~ld------  232 (443)
T PF04053_consen  172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLV--NG----------ETGIIAHLD------  232 (443)
T ss_dssp             E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEE--TT----------EEEEEEE-S------
T ss_pred             ecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEE--cC----------CcceEEEcC------
Confidence            54330    000000 1222222256788888877654444444 666532  11          001111111      


Q ss_pred             ccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          436 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       436 ~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                        ...-++...+..+.+.....|+.|..+.++.....
T Consensus       233 --~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~  267 (443)
T PF04053_consen  233 --KPLYLLGYLPKENRLYLIDRDGNVISYELDLSELE  267 (443)
T ss_dssp             --S--EEEEEETTTTEEEEE-TT--EEEEE--HHHHH
T ss_pred             --CceEEEEEEccCCEEEEEECCCCEEEEEECHHHHH
Confidence              11223333333478999999999999998865543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.98  E-value=0.0025  Score=67.22  Aligned_cols=205  Identities=16%  Similarity=0.135  Sum_probs=124.6

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-eeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEc----ccCcc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-IASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRA----VEVLP  232 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~----~~~~~  232 (536)
                      .+.|.++.|..+++-++.+..+|.|.+-|.++... +......+..+.+++||+..++..+..+++.+-+-    -...+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            36899999999999999999999999999887643 23333445566777899999999998888876432    11110


Q ss_pred             c---------ee---------cccCcccccceEEeeC---------CccCEEEEEE--eCCEEEE-----EecCCeEEEE
Q 009373          233 H---------LF---------DISGSEKQNTQFRLWE---------HEGPITSLAL--DLTRIYS-----GSWDMTVRVW  278 (536)
Q Consensus       233 ~---------~~---------~~~~~~~~~~~~~~~~---------h~~~v~~l~~--~~~~l~s-----~s~dg~i~iw  278 (536)
                      .         ..         .+.++...........         -.+.=++++|  ||+++++     ...-+.|++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence            0         00         0000000000000000         1112245788  7778876     2333899999


Q ss_pred             eCCCceEeEeee---ccccEEEEeecCCEEEEec----CCcEEEEeCCCC---cEEEEEccccccceEEEEEeCCCCEEE
Q 009373          279 DRALLKCLKVLR---HSDWVYGLAPHDTTVASTS----GSDVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       279 d~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~----d~~i~i~d~~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      |.+ |..-..-.   ......+..|.|..+++-.    ++.|.+|.-+.-   +-...+. ....++..++|+.++..|+
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p-~de~~ve~L~Wns~sdiLA  305 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP-LDEKEVEELAWNSNSDILA  305 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc-ccccchheeeecCCCCcee
Confidence            987 33322221   2223344448888888754    467888875432   1111121 1333489999999999988


Q ss_pred             E---EcCCCcEEEEEcccC
Q 009373          349 T---GGEDGAIHMYEIIND  364 (536)
Q Consensus       349 t---g~~dg~i~iwd~~~~  364 (536)
                      +   ......|++|-+.+.
T Consensus       306 v~~~~~e~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  306 VVTSNLENSLVQLWTTGNY  324 (1265)
T ss_pred             eeecccccceEEEEEecCe
Confidence            7   555556999988765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.94  E-value=0.013  Score=57.79  Aligned_cols=143  Identities=9%  Similarity=0.083  Sum_probs=86.9

Q ss_pred             EEEecCCCE-EEEEeCC---CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecC--Ce
Q 009373          204 RAVAADKKL-LVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWD--MT  274 (536)
Q Consensus       204 ~~~~~~~~~-l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~d--g~  274 (536)
                      -.++|+|+. ++..+.+   ..|.++|+.++.              ...+....+......|  |++.++ +.+.+  ..
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------------~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~  258 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------------KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPD  258 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------------EEEEecCCCcEEeeEECCCCCEEEEEEccCCCcE
Confidence            456799984 5544433   568888887763              1222223444445556  776654 34333  56


Q ss_pred             EEEEeCCCceEeEeeeccc--cEEEEeecCCEEEEecC--C--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373          275 VRVWDRALLKCLKVLRHSD--WVYGLAPHDTTVASTSG--S--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       275 i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      |.++|+.+++......+..  .-..++|+|+.++..++  +  .|.+.|+.+++..+....+.    ....|+|+|+.|+
T Consensus       259 Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia  334 (419)
T PRK04043        259 IYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIV  334 (419)
T ss_pred             EEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEE
Confidence            8888988776443322322  22346699987777663  2  68888998887644432221    1248999999887


Q ss_pred             EEcCC---------CcEEEEEcccC
Q 009373          349 TGGED---------GAIHMYEIIND  364 (536)
Q Consensus       349 tg~~d---------g~i~iwd~~~~  364 (536)
                      ..+..         ..|.+.|+.++
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g  359 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSD  359 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCC
Confidence            66543         25777787666

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.94  E-value=0.00024  Score=69.13  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      .....|.|++++|+...|+.|+.||+|.+||...+.....-..-.....+++|+|..+++|+..|.+.+||+.-...
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence            46778999999999999999999999999999877554443334456678889999999999999999999865543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.85  E-value=0.022  Score=52.17  Aligned_cols=219  Identities=14%  Similarity=0.101  Sum_probs=129.3

Q ss_pred             EEEEec-CCCEEEEEeCCCc-EEEEECCCCceeeeeCCCCceE----EEEecCCCEEEEEeC-----CCcEEEEEcccCc
Q 009373          163 TVFVLA-SAKLLFTSGYDSI-VRMWHLEDGFSIASSKPLGCTI----RAVAADKKLLVAGGT-----DGFIHCWRAVEVL  231 (536)
Q Consensus       163 ~v~~~~-~~~~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sg~~-----dg~i~vwd~~~~~  231 (536)
                      .++.+| ....++.+-.-|+ ..+||..+++....+......-    -.+++||++|++.-.     .|.|-|||...+.
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            566788 4556666666654 6789999998887775544332    367899999998644     4889999997432


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEE------------------ecCCeEEEEeCCCceEeEeee-
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG------------------SWDMTVRVWDRALLKCLKVLR-  290 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~------------------s~dg~i~iwd~~~~~~~~~~~-  290 (536)
                                  ..+..+..|.-.-..+.+  ++..|+.+                  +.+-++...|..+++.+.... 
T Consensus        89 ------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   89 ------------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             ------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence                        233334333322333333  44344433                  234456666777888776643 


Q ss_pred             ----ccccEEEEe--ecCCEEEEec-CCc-------EEEEeCCCCcEEEEEc------cccccceEEEEEeCCCCEEEEE
Q 009373          291 ----HSDWVYGLA--PHDTTVASTS-GSD-------VYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTG  350 (536)
Q Consensus       291 ----~~~~v~~~~--~~~~~l~~~~-d~~-------i~i~d~~~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~tg  350 (536)
                          |...+.-++  .+|..++... .+.       +-+++...  .+..+.      ..-.+.+-+|++++++.++++.
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence                445566555  5555555544 221       33443332  222221      1234578899999999877655


Q ss_pred             c-CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEE
Q 009373          351 G-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLS  403 (536)
Q Consensus       351 ~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~  403 (536)
                      + .-|.+.+||..++      ..+...  .-..+..++..+.-++..+..|.+.
T Consensus       235 sPrGg~~~~~d~~tg------~~~~~~--~l~D~cGva~~~~~f~~ssG~G~~~  280 (305)
T PF07433_consen  235 SPRGGRVAVWDAATG------RLLGSV--PLPDACGVAPTDDGFLVSSGQGQLI  280 (305)
T ss_pred             CCCCCEEEEEECCCC------CEeecc--ccCceeeeeecCCceEEeCCCccEE
Confidence            5 5678999999988      333322  2234566666553344444445543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=1.3e-05  Score=71.06  Aligned_cols=44  Identities=39%  Similarity=0.559  Sum_probs=41.5

Q ss_pred             ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHH
Q 009373           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~  107 (536)
                      ...||+||++.||+.|.-++|.+++.|||+|+++++|+.+|..+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l  141 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL  141 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence            45899999999999999999999999999999999999999863

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.80  E-value=0.03  Score=55.15  Aligned_cols=206  Identities=16%  Similarity=0.082  Sum_probs=101.1

Q ss_pred             cEEEEECCCCceeeeeCCCCceEEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEE
Q 009373          181 IVRMWHLEDGFSIASSKPLGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL  259 (536)
Q Consensus       181 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  259 (536)
                      .|.||+.. |+.+.++.=..+.+.++.. +...|+.-..||.++++|+....  .+.+..     ......-....+...
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~-----~i~~~~v~e~~i~~~  133 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGE-----EIEEEKVLECRIFAI  133 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhh-----hccccCccccccccc
Confidence            58999864 5666655333367777773 45678888899999999985332  111100     010111111222222


Q ss_pred             EE-eCCEEEEEecCCeEEEEeCCCce-EeEeee-c------------cccEEEEeecCCEEEEec-CCcEEEEeCCCCcE
Q 009373          260 AL-DLTRIYSGSWDMTVRVWDRALLK-CLKVLR-H------------SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCL  323 (536)
Q Consensus       260 ~~-~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~------------~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~  323 (536)
                      .+ +.+ ++.-..++.+.+.+-.... ....+. .            ...+..+..+....+... ++.+.+.+....+.
T Consensus       134 ~~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~  212 (410)
T PF04841_consen  134 WFYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ  212 (410)
T ss_pred             ccCCCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc
Confidence            33 223 2222334444443221111 111110 0            001111222233323222 44555444332211


Q ss_pred             EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEEEEcCCeEEEEeCCCcE
Q 009373          324 LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEFPWLVSAAGDGKL  402 (536)
Q Consensus       324 ~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i  402 (536)
                         +  ...+++..+++||+|+++|.-..+|.+.+.+..-.      ..+..+.. -......+.|.++-.+.......|
T Consensus       213 ---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~------~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l  281 (410)
T PF04841_consen  213 ---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS------EKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDEL  281 (410)
T ss_pred             ---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc------ceeEEeecCcCCCCcEEEEECCCcEEEEeCCEE
Confidence               1  13468999999999999999999999988875444      22333222 234566777776422222224445


Q ss_pred             EEEE
Q 009373          403 SLID  406 (536)
Q Consensus       403 ~vwd  406 (536)
                      .+..
T Consensus       282 ~lvg  285 (410)
T PF04841_consen  282 LLVG  285 (410)
T ss_pred             EEEC
Confidence            5554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.79  E-value=0.006  Score=59.23  Aligned_cols=199  Identities=14%  Similarity=0.060  Sum_probs=113.0

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-------------------------------------------ee
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-------------------------------------------SS  196 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~-------------------------------------------~~  196 (536)
                      .|+.+.|.++..-|+.|...|.|.||.....+...                                           -+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999998999999999999999653221110                                           01


Q ss_pred             CCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-------eC---CE
Q 009373          197 KPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-------DL---TR  265 (536)
Q Consensus       197 ~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-------~~---~~  265 (536)
                      +...++|.++. .+=.+++.|..+|.+.|.|++... .++...-.+    ...-......|+++.|       |+   -.
T Consensus        83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa-vI~~~~i~~----~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA-VIYNENIRE----SFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE-EEEEEEGGG------T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe-EEeeccccc----cccccccccCeeEEEEEEEecCCCcccceE
Confidence            22345666776 466799999999999999996543 222211000    0001123456777877       22   35


Q ss_pred             EEEEecCCeEEEEeCC--C-ceEeE----ee-eccccEEEEee------------------------cCCEEEEecCCcE
Q 009373          266 IYSGSWDMTVRVWDRA--L-LKCLK----VL-RHSDWVYGLAP------------------------HDTTVASTSGSDV  313 (536)
Q Consensus       266 l~s~s~dg~i~iwd~~--~-~~~~~----~~-~~~~~v~~~~~------------------------~~~~l~~~~d~~i  313 (536)
                      +++|...|.+.+|.+.  . +....    .. .+.+.|..+.+                        -..+++++++..+
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i  237 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI  237 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence            8899999999999764  1 21111    11 24455544431                        0236788889999


Q ss_pred             EEEeCCCCcEEEEEccccccceEEEEEe-----CCCCEEEEEcCCCcEEEEEcccC
Q 009373          314 YIWDTNSGCLLTVVNGAHVGNTKSLARS-----HTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       314 ~i~d~~~~~~~~~~~~~~~~~i~~l~~~-----~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +++...+.+....... .......+.+-     ..+..|++-..+|.|++|.+..-
T Consensus       238 rv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L  292 (395)
T PF08596_consen  238 RVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL  292 (395)
T ss_dssp             EEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred             EEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence            9999998877666542 22233334442     35667888889999999999776

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PHA02713 hypothetical protein; Provisional

Probab=97.77  E-value=0.0032  Score=64.66  Aligned_cols=214  Identities=11%  Similarity=0.035  Sum_probs=114.5

Q ss_pred             CcEEEEECCCCcee--eeeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEcccCccceecccCcccccceEEeeC
Q 009373          180 SIVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  251 (536)
Q Consensus       180 g~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  251 (536)
                      ..+..||..+++-.  ..+............++..++.||.+      ..+..||..+...           .....+..
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-----------~~~~~m~~  340 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIH-----------VELPPMIK  340 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeE-----------eeCCCCcc
Confidence            35677888776422  22221111112233577788888754      3467777655421           11111111


Q ss_pred             CccCEEEEEEeCCEEEEEecCC-----eEEEEeCCCceEeE--eeecc-ccEEEEeecCCEEEEec-C------------
Q 009373          252 HEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLK--VLRHS-DWVYGLAPHDTTVASTS-G------------  310 (536)
Q Consensus       252 h~~~v~~l~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~--~~~~~-~~v~~~~~~~~~l~~~~-d------------  310 (536)
                      ..........++...+.|+.++     ++..||..+.+-..  .+... .....+..++.+.+.|+ +            
T Consensus       341 ~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~  420 (557)
T PHA02713        341 NRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN  420 (557)
T ss_pred             hhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccc
Confidence            1122233444777778888764     47889987654322  11211 11122335677777665 3            


Q ss_pred             -----------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC------cEEEEEccc-Cccccccce
Q 009373          311 -----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG------AIHMYEIIN-DCTEANVLL  372 (536)
Q Consensus       311 -----------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg------~i~iwd~~~-~~~~~~~~~  372 (536)
                                 ..+..||+.+.+....-. -.......-...-++++.+.|+.++      .+..||..+ ..    +..
T Consensus       421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~-m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~----W~~  495 (557)
T PHA02713        421 SIDMEEDTHSSNKVIRYDTVNNIWETLPN-FWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG----WEL  495 (557)
T ss_pred             cccccccccccceEEEECCCCCeEeecCC-CCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC----eeE
Confidence                       247788988775432211 1111111111223567777777542      467888876 31    234


Q ss_pred             eeeccCCCCCeEEEEEcCCeEEEEeCCC--cEEEEECCc
Q 009373          373 VATWIPHTGPVNSLAFEFPWLVSAAGDG--KLSLIDVRK  409 (536)
Q Consensus       373 ~~~~~~h~~~v~~l~~~~~~l~s~s~dg--~i~vwd~~~  409 (536)
                      +..+.........+.+++...++|+.||  .+..||+.+
T Consensus       496 ~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        496 ITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ccccCcccccceeEEECCEEEEEeeecceeehhhcCccc
Confidence            4445445555666667788888999888  677888776

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.77  E-value=1.6e-05  Score=77.30  Aligned_cols=242  Identities=16%  Similarity=0.160  Sum_probs=139.1

Q ss_pred             cccEEEEEEecCC--CEEEEEeCCCcEEEEECCCCce--eeeeCCCCceEEEEe---cCCCEEEEEe----CCCcEEEEE
Q 009373          158 TEAVLTVFVLASA--KLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA---ADKKLLVAGG----TDGFIHCWR  226 (536)
Q Consensus       158 ~~~V~~v~~~~~~--~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~---~~~~~l~sg~----~dg~i~vwd  226 (536)
                      ...+.|+++.-+.  .+++.|..+|.|.+-.+....-  .....++..++.+++   .|.+.||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3456677665443  4788999999999988754322  233345555565555   3556777763    357799999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE-eEeeeccccEE--EEee-
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC-LKVLRHSDWVY--GLAP-  300 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~v~--~~~~-  300 (536)
                      +.++....+       ....+.- +-.....+++|  +.+.+++|...+.+.++|++.... ...+ ....+.  .+.| 
T Consensus       136 i~s~ltvPk-------e~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nTk~vqG~tVdp~  206 (783)
T KOG1008|consen  136 INSLLTVPK-------ESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NTKYVQGITVDPF  206 (783)
T ss_pred             cccccCCCc-------ccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hhhhcccceecCC
Confidence            987632110       1111111 13344557888  667889999999999999873221 1111 122233  3445 


Q ss_pred             cCCEEEEecCCcEEEEe-CCCCc-EEEEEc---cccccceEEEEEeCCCC-EEEEEcC-CCcEEEEEcccCcccccc---
Q 009373          301 HDTTVASTSGSDVYIWD-TNSGC-LLTVVN---GAHVGNTKSLARSHTGD-FLFTGGE-DGAIHMYEIINDCTEANV---  370 (536)
Q Consensus       301 ~~~~l~~~~d~~i~i~d-~~~~~-~~~~~~---~~~~~~i~~l~~~~~~~-~l~tg~~-dg~i~iwd~~~~~~~~~~---  370 (536)
                      .+.++++..+|.|.+|| .+.-+ ++..+.   ......+..++|+|... .+++... .++|+.||+.........   
T Consensus       207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~  286 (783)
T KOG1008|consen  207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS  286 (783)
T ss_pred             CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence            78898888899999999 33322 222221   11223588999999643 4455444 578999998654322110   


Q ss_pred             --ceeee---ccCC--CCCeEEEEEcC----CeEEEEeCCCcEEEEECC
Q 009373          371 --LLVAT---WIPH--TGPVNSLAFEF----PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       371 --~~~~~---~~~h--~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~  408 (536)
                        .....   ++..  ...|.+..|++    ...+++-..-.+.-+++.
T Consensus       287 ~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~  335 (783)
T KOG1008|consen  287 VFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH  335 (783)
T ss_pred             ceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence              01111   1111  24566666654    345555555555555554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.75  E-value=0.0037  Score=64.08  Aligned_cols=225  Identities=16%  Similarity=0.138  Sum_probs=129.5

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEcccCccce
Q 009373          169 SAKLLFTSGYDS------IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRAVEVLPHL  234 (536)
Q Consensus       169 ~~~~l~sgs~dg------~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~~~~~~~  234 (536)
                      .+.+++.|+.++      .+..+|..+++-..  .+............++...++|+.|      .++..||..++.   
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~---  360 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ---  360 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc---
Confidence            466777887773      67888888773322  2222222333334677888999998      346667765543   


Q ss_pred             ecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCe-----EEEEeCCCceEeEeeeccccE---EEEeecCCEEE
Q 009373          235 FDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMT-----VRVWDRALLKCLKVLRHSDWV---YGLAPHDTTVA  306 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~v---~~~~~~~~~l~  306 (536)
                              ......+............++...+.|+.||.     |-.||..+.+-...-......   -....++.+.+
T Consensus       361 --------W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi  432 (571)
T KOG4441|consen  361 --------WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI  432 (571)
T ss_pred             --------eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE
Confidence                    22222232233333334448888899999874     677887665433322211122   22236777777


Q ss_pred             Eec-C------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc-----EEEEEcccCccccccceee
Q 009373          307 STS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-----IHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       307 ~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~-----i~iwd~~~~~~~~~~~~~~  374 (536)
                      +|+ +      .++..||..++.....-.-.....-..++. -++.+.+.|+.|+.     |..||..+..    +..+.
T Consensus       433 ~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~----W~~v~  507 (571)
T KOG4441|consen  433 IGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ----WTMVA  507 (571)
T ss_pred             EcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc----eeEcc
Confidence            776 4      248899998876433221001111111222 25778888887763     7778887762    23444


Q ss_pred             eccCCCCCeEEEEEcCCeEEEEeCCC-----cEEEEECCc
Q 009373          375 TWIPHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRK  409 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~  409 (536)
                      .+......+.....+....++|+.||     +|..||..+
T Consensus       508 ~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~  547 (571)
T KOG4441|consen  508 PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPET  547 (571)
T ss_pred             cCccccccccEEEECCEEEEEecccCccccceeEEcCCCC
Confidence            44455556666666777888888775     466666554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.73  E-value=0.026  Score=52.61  Aligned_cols=221  Identities=14%  Similarity=0.153  Sum_probs=124.9

Q ss_pred             ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce
Q 009373          207 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK  284 (536)
Q Consensus       207 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~  284 (536)
                      ...++.|+.|..+| +.+++.....            .....  .+...|..+..  +-+.+++-+ |+.+.++++....
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~------------~~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~   67 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPS------------KPTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE   67 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCc------------cceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence            35678899999998 8899872211            11111  12333888888  345555554 5999999987554


Q ss_pred             EeE---------------eeeccccEEEEe-----ecCCEEEEecCCcEEEEeCCCC-----cEEEEEccccccceEEEE
Q 009373          285 CLK---------------VLRHSDWVYGLA-----PHDTTVASTSGSDVYIWDTNSG-----CLLTVVNGAHVGNTKSLA  339 (536)
Q Consensus       285 ~~~---------------~~~~~~~v~~~~-----~~~~~l~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~i~~l~  339 (536)
                      ...               .+.....+..++     .....++++...+|.+|.....     +....+.  -...+.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~  145 (275)
T PF00780_consen   68 PVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIA  145 (275)
T ss_pred             cccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEE
Confidence            433               222223333333     3344566666778888877653     4555553  557888999


Q ss_pred             EeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc----------CCCCCeEEEEEcC-CeEEEEeCCCcEEEEECC
Q 009373          340 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----------PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       340 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~  408 (536)
                      |.  ++.++.|..++ ..+.|+.++..    ..+....          ....++..+..+. .+|++-  |..-.+.|..
T Consensus       146 ~~--~~~i~v~~~~~-f~~idl~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~  216 (275)
T PF00780_consen  146 FL--GNKICVGTSKG-FYLIDLNTGSP----SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN  216 (275)
T ss_pred             Ee--CCEEEEEeCCc-eEEEecCCCCc----eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC
Confidence            98  56777776555 78889886632    1111111          1223455555553 444432  2233333332


Q ss_pred             cccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHH
Q 009373          409 KLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      . ....                . ..+. -.....++.....||+..+.++ |.||++.+++.++.
T Consensus       217 G-~~~r----------------~-~~i~-W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~  262 (275)
T PF00780_consen  217 G-EPSR----------------K-STIQ-WSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQT  262 (275)
T ss_pred             C-CcCc----------------c-cEEE-cCCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEE
Confidence            2 1110                0 0011 1123345555667888887755 99999999966543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.72  E-value=0.026  Score=53.90  Aligned_cols=132  Identities=14%  Similarity=0.171  Sum_probs=89.7

Q ss_pred             CeEEEEeCCCc-----eE--eEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCc-EEEEEccccccceEEEEEeCCC
Q 009373          273 MTVRVWDRALL-----KC--LKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTKSLARSHTG  344 (536)
Q Consensus       273 g~i~iwd~~~~-----~~--~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~i~~l~~~~~~  344 (536)
                      |.|.++++...     +.  +......++|+++.+-+..++++.++.|.+|++...+ ....-.......+.++...  +
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~  139 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K  139 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--c
Confidence            89999999884     22  2333478999999976777888889999999998887 4444321223355555554  6


Q ss_pred             CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCc
Q 009373          345 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       345 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~  409 (536)
                      +++++|..-..+.++.++...  ..+..+.. ......++++.|-  .+.++.+..+|.+.++....
T Consensus       140 ~~I~vgD~~~sv~~~~~~~~~--~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  140 NYILVGDAMKSVSLLRYDEEN--NKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             TEEEEEESSSSEEEEEEETTT--E-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             cEEEEEEcccCEEEEEEEccC--CEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            799999998899988766531  11222222 2234457777773  46999999999999998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=3.8e-05  Score=77.42  Aligned_cols=191  Identities=13%  Similarity=0.086  Sum_probs=117.2

Q ss_pred             eeeeeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE
Q 009373          192 SIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY  267 (536)
Q Consensus       192 ~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~  267 (536)
                      ..++++.+....+  +|+.+.+.|+.|+..|.|+++++.+|.             ......+|.++|+-+..  +|..++
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------------~e~s~ncH~SavT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------------MEESVNCHQSAVTLVEPSVDGSTQL 1159 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------------ccccccccccccccccccCCcceee
Confidence            3445555655444  455678899999999999999998874             44456789999999987  777666


Q ss_pred             EEec-CC-eEEEEeCCC-ceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccc---cccceEEEEE
Q 009373          268 SGSW-DM-TVRVWDRAL-LKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLAR  340 (536)
Q Consensus       268 s~s~-dg-~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~  340 (536)
                      +.+. .. -..+|++.+ +...+.+.....| .++.....-+.|. .....+||++++..+.++..+   ....-++..|
T Consensus      1160 tsss~S~PlsaLW~~~s~~~~~Hsf~ed~~v-kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFDEDKAV-KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             eeccccCchHHHhccccccCcccccccccee-ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence            5443 33 467899764 3344444322221 1222222223333 577899999999887764322   2223367889


Q ss_pred             eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccccc
Q 009373          341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      +|+..+++   .||  .+||++..      ..++.+...+..+ .=.|+|  .-++.-+     .|||+++....
T Consensus      1239 sP~D~LIl---ndG--vLWDvR~~------~aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIP------EAIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             CCCcceEe---eCc--eeeeeccH------HHHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHH
Confidence            99988776   466  46999887      3444433222111 113444  3444433     47888876443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.65  E-value=0.0046  Score=47.00  Aligned_cols=96  Identities=23%  Similarity=0.276  Sum_probs=66.1

Q ss_pred             EEEEEE---eC---CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEE
Q 009373          256 ITSLAL---DL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVV  327 (536)
Q Consensus       256 v~~l~~---~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~  327 (536)
                      |+++++   ++   +.|++||.|..|++|+-  .+.+..+...+.|.++. ..+..++.+. +|+|-+|+-.  ..+..+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeee
Confidence            566665   33   58999999999999984  46778888888899888 3334455444 8999999763  233334


Q ss_pred             ccccccceEEEEEeC-CC---CEEEEEcCCCcEE
Q 009373          328 NGAHVGNTKSLARSH-TG---DFLFTGGEDGAIH  357 (536)
Q Consensus       328 ~~~~~~~i~~l~~~~-~~---~~l~tg~~dg~i~  357 (536)
                      +  ....+.++.+.. ++   .-|++|-.+|.|-
T Consensus        78 K--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 K--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3  333466666543 32   3689999999874

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.61  E-value=0.00043  Score=67.43  Aligned_cols=89  Identities=22%  Similarity=0.264  Sum_probs=67.0

Q ss_pred             EEEEeCCCCcE--EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373          313 VYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       313 i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                      -.+|++..++.  +....-.....+.+++++|+...++.|+.||+|.+||...+        +..+....-.++.++|+|
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp  309 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHP  309 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcC
Confidence            44566655432  22222247889999999999999999999999999998766        222223445678999987


Q ss_pred             --CeEEEEeCCCcEEEEECCc
Q 009373          391 --PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       391 --~~l~s~s~dg~i~vwd~~~  409 (536)
                        ..+++|+.-|.+.+||+.-
T Consensus       310 ~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  310 DGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CCcEEEEEcCCceEEEEEeec
Confidence              5999999999999999863

>smart00320 WD40 WD40 repeats

Probab=97.60  E-value=0.00016  Score=43.70  Aligned_cols=37  Identities=27%  Similarity=0.492  Sum_probs=33.7

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  186 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd  186 (536)
                      ....+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3567789999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.59  E-value=0.022  Score=55.38  Aligned_cols=249  Identities=19%  Similarity=0.178  Sum_probs=110.0

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccce------------------------ecccC------cccccceEEeeCCc
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHL------------------------FDISG------SEKQNTQFRLWEHE  253 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~------------------------~~~~~------~~~~~~~~~~~~h~  253 (536)
                      .+++++...|++|...|.|.+|.+......-                        .+...      .+...+...+....
T Consensus         7 vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~   86 (395)
T PF08596_consen    7 VSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQ   86 (395)
T ss_dssp             EEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S
T ss_pred             EEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccC
Confidence            4556788899999999999999886543211                        00000      00011122222334


Q ss_pred             cCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccc
Q 009373          254 GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHV  332 (536)
Q Consensus       254 ~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~  332 (536)
                      ++|++++. |=.+++.|..+|.+.|.|++....+..-.-..                               ........
T Consensus        87 g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-------------------------------~~~~~~~~  135 (395)
T PF08596_consen   87 GPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-------------------------------SFLSKSSS  135 (395)
T ss_dssp             -SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---------------------------------T-SS--
T ss_pred             CcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccc-------------------------------cccccccc
Confidence            55555555 44555555555555555555444443321110                               00000122


Q ss_pred             cceEEEEEeC-----CC---CEEEEEcCCCcEEEEEccc-CccccccceeeeccCCCCCeEEEEE-cC------------
Q 009373          333 GNTKSLARSH-----TG---DFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAF-EF------------  390 (536)
Q Consensus       333 ~~i~~l~~~~-----~~---~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~-~~------------  390 (536)
                      ..++++.|..     |+   -.+++|+..|.+.+|.+.- ...............+.++|..|.. +.            
T Consensus       136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~  215 (395)
T PF08596_consen  136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISA  215 (395)
T ss_dssp             --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHH
T ss_pred             cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhH
Confidence            2455555542     22   3678888888888888752 2111122222222345566655542 10            


Q ss_pred             ----------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE-----EecCCEEEEe
Q 009373          391 ----------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV-----DIGADRIVCG  455 (536)
Q Consensus       391 ----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~l~sg  455 (536)
                                +.++....+..++++...+.+...+..           ..      .......++     ...+..|++-
T Consensus       216 ~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-----------~~------~~~~~~~~vv~~~~~~~~~~Lv~l  278 (395)
T PF08596_consen  216 MQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-----------DD------PFLCSSASVVPTISRNGGYCLVCL  278 (395)
T ss_dssp             HHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE------------SS-------EEEEEEEEEEEE-EEEEEEEEEE
T ss_pred             hhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-----------cc------ccccceEEEEeecccCCceEEEEE
Confidence                      234444556779999887643221111           00      001111122     1234488899


Q ss_pred             cCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcce
Q 009373          456 GEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQ  506 (536)
Q Consensus       456 ~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  506 (536)
                      ..||.|+++.++.-+++....-.      ...-.+......++++|..+..
T Consensus       279 ~~~G~i~i~SLP~Lkei~~~~l~------~~~d~~~~~~ssis~~Gdi~~~  323 (395)
T PF08596_consen  279 FNNGSIRIYSLPSLKEIKSVSLP------PPLDSRRLSSSSISRNGDIFYW  323 (395)
T ss_dssp             ETTSEEEEEETTT--EEEEEE-S------S---HHHHTT-EE-TTS-EEEE
T ss_pred             ECCCcEEEEECCCchHhhcccCC------CccccccccccEECCCCCEEEE
Confidence            99999999999986665433221      1111233456777888886654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.52  E-value=0.022  Score=56.13  Aligned_cols=223  Identities=12%  Similarity=0.049  Sum_probs=114.2

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE-Eccc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW-RAVE  229 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw-d~~~  229 (536)
                      ++.+....-....+.++|+|++++.++ ||.-.|+.....+....-.   +.-..+.. .+.+++-..+++|.++ ++..
T Consensus        25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G~---g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFGS---GLSFVWSS-RNRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEEE----SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred             eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccCc---eeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence            344555555678999999999998854 7777888844443332211   11233444 4557777778889986 3322


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEE
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAS  307 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~  307 (536)
                      ..            .....+   ...+..|-. |..|...+. +.|.+||..+++.+..+.... |..+.  +++++++.
T Consensus       100 ~~------------~k~i~~---~~~~~~If~-G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val  161 (443)
T PF04053_consen  100 EV------------VKSIKL---PFSVEKIFG-GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVAL  161 (443)
T ss_dssp             -T------------T--------SS-EEEEE--SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEE
T ss_pred             cc------------ceEEcC---CcccceEEc-CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEE
Confidence            10            001111   112333322 666665554 489999999999999998654 66665  66889999


Q ss_pred             ecCCcEEEEeCCCC-----------cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373          308 TSGSDVYIWDTNSG-----------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       308 ~~d~~i~i~d~~~~-----------~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                      .++.++.+++....           .....+. .....|.+.+|..+  .++-.+.. .++.  +..+..    ..+..+
T Consensus       162 ~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~----~~i~~l  231 (443)
T PF04053_consen  162 VTKDSIYILKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET----GIIAHL  231 (443)
T ss_dssp             E-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE----EEEEE-
T ss_pred             EeCCeEEEEEecchhcccccccCchhceEEEE-EecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc----ceEEEc
Confidence            99888888775443           0222221 12457888888765  44433333 5665  444421    223322


Q ss_pred             cCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          377 IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       377 ~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                         ..++.=+.+.+  +.++....|+.|..+.+..
T Consensus       232 ---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  232 ---DKPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ---SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ---CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence               34566666666  7888888888888887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.48  E-value=0.012  Score=60.30  Aligned_cols=226  Identities=16%  Similarity=0.170  Sum_probs=119.7

Q ss_pred             CCCEEEEEeCCC------cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecC------CeE
Q 009373          209 DKKLLVAGGTDG------FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWD------MTV  275 (536)
Q Consensus       209 ~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d------g~i  275 (536)
                      .+.+++.|+.++      .+..+|..++.           ......+.... .-.+++. ++...++|+.|      .++
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~-----------w~~~a~m~~~r-~~~~~~~~~~~lYv~GG~~~~~~~l~~v  351 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE-----------WSSLAPMPSPR-CRVGVAVLNGKLYVVGGYDSGSDRLSSV  351 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCc-----------EeecCCCCccc-ccccEEEECCEEEEEccccCCCcccceE
Confidence            355667777663      57777776652           11122222222 2334444 77778889888      357


Q ss_pred             EEEeCCCceEeEeee--ccccEEEEe-ecCCEEEEec-CC-----cEEEEeCCCCcEEEEEccccccceEEEE-EeCCCC
Q 009373          276 RVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVASTS-GS-----DVYIWDTNSGCLLTVVNGAHVGNTKSLA-RSHTGD  345 (536)
Q Consensus       276 ~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~~~-d~-----~i~i~d~~~~~~~~~~~~~~~~~i~~l~-~~~~~~  345 (536)
                      ..||..+.+-...-.  ....-.+++ .+|.+.++|+ ||     ++-.||..+.+.-..-.  ......... ..-+|.
T Consensus       352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~  429 (571)
T KOG4441|consen  352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGK  429 (571)
T ss_pred             EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCE
Confidence            788887766333211  111112233 6777777777 64     48889988865432221  111111111 122577


Q ss_pred             EEEEEcCCC------cEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCc-----EEEEECCcccccC
Q 009373          346 FLFTGGEDG------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGK-----LSLIDVRKLLRSG  414 (536)
Q Consensus       346 ~l~tg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~-----i~vwd~~~~~~~~  414 (536)
                      +.++||.++      ++..||..++.    +..+..+..-........+++...+.||.|+.     |..||..+.+-. 
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~----W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-  504 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNT----WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWT-  504 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCc----eeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCcee-
Confidence            888888654      46788877763    12233332222333344456677777887763     677877653111 


Q ss_pred             CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCe-----EEEEeCCch
Q 009373          415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGI-----VRIWNFSQA  469 (536)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~-----i~vW~~~~~  469 (536)
                                  ..    ..+......+-....++...+.||.||.     |..||..++
T Consensus       505 ------------~v----~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  505 ------------MV----APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ------------Ec----ccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence                        00    0011122223334455668889998876     455655543

>PHA02713 hypothetical protein; Provisional

Probab=97.46  E-value=0.018  Score=59.26  Aligned_cols=188  Identities=9%  Similarity=-0.030  Sum_probs=95.5

Q ss_pred             EeCCEEEEEecC------CeEEEEeCCCceEeEee--ec-cccEEEEeecCCEEEEec-CC-----cEEEEeCCCCcEEE
Q 009373          261 LDLTRIYSGSWD------MTVRVWDRALLKCLKVL--RH-SDWVYGLAPHDTTVASTS-GS-----DVYIWDTNSGCLLT  325 (536)
Q Consensus       261 ~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~--~~-~~~v~~~~~~~~~l~~~~-d~-----~i~i~d~~~~~~~~  325 (536)
                      .++..++.|+.+      ..+..||..+..-...-  .. .........++++.+.|+ ++     ++..||..+++...
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            366777777754      34778888766432211  11 112223336777777776 42     48889998775433


Q ss_pred             EEccccccceEEEEEeCCCCEEEEEcCCC-----------------------cEEEEEcccCccccccceeeeccCCCCC
Q 009373          326 VVNGAHVGNTKSLARSHTGDFLFTGGEDG-----------------------AIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       326 ~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      .-.-.....-.+++ .-+|.+.+.|+.++                       .+..||..+..    +..+..+......
T Consensus       382 ~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~----W~~v~~m~~~r~~  456 (557)
T PHA02713        382 LPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI----WETLPNFWTGTIR  456 (557)
T ss_pred             CCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe----EeecCCCCccccc
Confidence            11101111111121 22577777787653                       47778876652    1222222222222


Q ss_pred             eEEEEEcCCeEEEEeCCC------cEEEEECCc-ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEe
Q 009373          383 VNSLAFEFPWLVSAAGDG------KLSLIDVRK-LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG  455 (536)
Q Consensus       383 v~~l~~~~~~l~s~s~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  455 (536)
                      ...+.+.+...+.|+.++      .+..||..+ ..  +.           ...+    +.......-....++...+.|
T Consensus       457 ~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~-----------~~~~----m~~~r~~~~~~~~~~~iyv~G  519 (557)
T PHA02713        457 PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WE-----------LITT----TESRLSALHTILHDNTIMMLH  519 (557)
T ss_pred             CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCC--ee-----------Eccc----cCcccccceeEEECCEEEEEe
Confidence            223445566666666542      356788765 21  11           0011    111112223344567788999


Q ss_pred             cCCC--eEEEEeCCchh
Q 009373          456 GEEG--IVRIWNFSQAF  470 (536)
Q Consensus       456 ~~Dg--~i~vW~~~~~~  470 (536)
                      |.||  .+..||+.+++
T Consensus       520 g~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        520 CYESYMLQDTFNVYTYE  536 (557)
T ss_pred             eecceeehhhcCccccc
Confidence            9998  66667766643

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.44  E-value=0.014  Score=58.75  Aligned_cols=160  Identities=14%  Similarity=0.090  Sum_probs=85.6

Q ss_pred             ecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-------------------------
Q 009373          300 PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-------------------------  352 (536)
Q Consensus       300 ~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-------------------------  352 (536)
                      ++|+.+...+  .+.+.+.|..+.+...++.  -.+....+.++|+|+++++.+.                         
T Consensus       202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~--Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVM--VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             CCCCEeecccceeEEEEEEECccceEEEEEE--eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            4555554333  3567777887776666653  2234456677777777766641                         


Q ss_pred             ---------------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEE-EeCCCcEEEEECCcccccC
Q 009373          353 ---------------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVS-AAGDGKLSLIDVRKLLRSG  414 (536)
Q Consensus       353 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-~s~dg~i~vwd~~~~~~~~  414 (536)
                                     ++.|.+.|.++.... . ..+.....-......++++|  .++++ +..+.+|.|.|+.+....+
T Consensus       280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~-~-~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANA-G-SALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             HHHHhhhCCCEEEECCCEEEEEECCccccC-C-cceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                           233555554440000 0 11122222334556778876  55554 4558999999998865432


Q ss_pred             CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      .-...-......+      ..-|-...-+.++..+....|---|..|..||+...
T Consensus       358 ~~~~~~~~~vvae------vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a  406 (635)
T PRK02888        358 DGKIKPRDAVVAE------PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAA  406 (635)
T ss_pred             hccCCccceEEEe------eccCCCcceEEECCCCCEEEeEeecceeEEEehHHH
Confidence            1110000000000      001222223455555568888888999999999874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.44  E-value=0.0014  Score=66.27  Aligned_cols=107  Identities=17%  Similarity=0.167  Sum_probs=80.8

Q ss_pred             EEEEEecCCCEEEEEeC----CCcEEEEECCCCceeeee-CCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          162 LTVFVLASAKLLFTSGY----DSIVRMWHLEDGFSIASS-KPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       162 ~~v~~~~~~~~l~sgs~----dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      +-.+|+|...+++.++.    .|.|.||- ++|++.... .+.....+|++|..-.|+.|-.-|.+.+|...+.+     
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-----   92 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-----   92 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-----
Confidence            34569999999988864    58888885 566644332 22223347778888899999999999999876542     


Q ss_pred             ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL  282 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~  282 (536)
                              .......|..+|..+.|  +|+.++++..-|.|.+|....
T Consensus        93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence                    22334469999999999  889999999999999998763

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.43  E-value=0.11  Score=48.53  Aligned_cols=271  Identities=13%  Similarity=0.108  Sum_probs=138.7

Q ss_pred             CcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCccceecccCcccccceEEe
Q 009373          180 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL  249 (536)
Q Consensus       180 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  249 (536)
                      +.+.|+|.++++.+..+...-..-..++|+++.+++++          ..-.|.+||..+-.... ++.-...  +.. .
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-EI~iP~k--~R~-~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-EIEIPPK--PRA-Q   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-EEEETTS---B---
T ss_pred             ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-eEecCCc--chh-e
Confidence            47999999999888777655455566889999888753          34568999987753211 0000000  000 0


Q ss_pred             eCCccCEEEEEEeCCEEEEE--ecCCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEecCCcEEEEeCC-CCcEEE
Q 009373          250 WEHEGPITSLALDLTRIYSG--SWDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTN-SGCLLT  325 (536)
Q Consensus       250 ~~h~~~v~~l~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~-~~~~~~  325 (536)
                      .........+.-++++++..  +--..|.|-|+...+.+..+..++...-.- .+..+...|.||++.-..+. .|+...
T Consensus        93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence            01111222333356655443  334567778888888877777554333332 34456677779999888887 455442


Q ss_pred             EEc---cccccc-eEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC----------CCCCeEEEEEcC-
Q 009373          326 VVN---GAHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP----------HTGPVNSLAFEF-  390 (536)
Q Consensus       326 ~~~---~~~~~~-i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------h~~~v~~l~~~~-  390 (536)
                      +..   .....+ +..-++...+..++--+.+|.|+--|+......    ....+..          -.+.-.-+++++ 
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~----~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~  248 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK----FGKPWSLLTDAEKADGWRPGGWQLIAYHAA  248 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE----EEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred             eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc----ccCcccccCccccccCcCCcceeeeeeccc
Confidence            221   111111 222334445555555788999998888776321    1111110          011223355543 


Q ss_pred             -CeEEEEe---C-----CC--cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEE-EecC
Q 009373          391 -PWLVSAA---G-----DG--KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIV-CGGE  457 (536)
Q Consensus       391 -~~l~s~s---~-----dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~-sg~~  457 (536)
                       +.|+.--   .     |+  .|-++|+.+.++..         ++.         -.+......++-+.. +|. ....
T Consensus       249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~---------Ri~---------l~~~~~Si~Vsqd~~P~L~~~~~~  310 (342)
T PF06433_consen  249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA---------RIP---------LEHPIDSIAVSQDDKPLLYALSAG  310 (342)
T ss_dssp             TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE---------EEE---------EEEEESEEEEESSSS-EEEEEETT
T ss_pred             cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE---------EEe---------CCCccceEEEccCCCcEEEEEcCC
Confidence             3333321   1     12  35555666543221         111         112222334443344 554 4567


Q ss_pred             CCeEEEEeCCchhhHHHHH
Q 009373          458 EGIVRIWNFSQAFEIERRA  476 (536)
Q Consensus       458 Dg~i~vW~~~~~~~~~~~~  476 (536)
                      ++.+.+||..+|+.+.+..
T Consensus       311 ~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  311 DGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             TTEEEEEETTT--EEEEE-
T ss_pred             CCeEEEEeCcCCcEEeehh
Confidence            8999999999998776543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.085  Score=47.35  Aligned_cols=276  Identities=12%  Similarity=0.051  Sum_probs=166.6

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee--CCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      +.+..+.++  ++++..+..+.-++|.|+.+.......  -...+...++.-.|++..++..|.-+.+.|+.+...    
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss----  160 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS----  160 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC----
Confidence            344555665  667788888888999999876543322  223356677788899999999777778889876532    


Q ss_pred             ccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeE---eeeccccEEEEeecCCEE-EEecCCc
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK---VLRHSDWVYGLAPHDTTV-ASTSGSD  312 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~l-~~~~d~~  312 (536)
                            ......+......-..++..|++-+.+..|+-+.+-|+.......   .......+.++.+.+++. ++..+..
T Consensus       161 ------P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg  234 (370)
T COG5276         161 ------PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG  234 (370)
T ss_pred             ------ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc
Confidence                  222333334445557788899999999999999999987654433   333555778888554444 4444777


Q ss_pred             EEEEeCCCCcEEEEEccccccceEEE-EEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC
Q 009373          313 VYIWDTNSGCLLTVVNGAHVGNTKSL-ARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP  391 (536)
Q Consensus       313 i~i~d~~~~~~~~~~~~~~~~~i~~l-~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~  391 (536)
                      +.+-|....+....+-.-....+.++ .+.-.+++......+.-+.+-|+.++..+   .....+......-..+...+.
T Consensus       235 vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp---fl~ss~~t~g~~a~gi~ay~~  311 (370)
T COG5276         235 VLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP---FLSSSLDTAGYQAAGIRAYGN  311 (370)
T ss_pred             eEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC---chhccccCCCccccceEEecC
Confidence            88888877765544422122222222 22224666666666767778888776321   222222222334456666777


Q ss_pred             eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373          392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       392 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      ++..+..+ ...+-+....+.......              ....   ....++..+.+.+-+...++-+.+|+..
T Consensus       312 y~yiadkn-~g~vV~~s~~s~m~~~~g--------------~~ti---~~s~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         312 YNYIADKN-TGAVVDASPPSMMDKRPG--------------RPTI---GQSCDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             eeEeccCC-ceEEEeCCChhhcccccC--------------cceE---eeecceEEEeeEEEEeecCCCEEEEEec
Confidence            77777666 555666554322211100              0001   1122333445578888889999999853

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.41  E-value=0.077  Score=53.60  Aligned_cols=179  Identities=12%  Similarity=-0.094  Sum_probs=107.9

Q ss_pred             EecCCCEEE-EEeCCCcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEEEeCCC----cEEEEEcccCccceecccC
Q 009373          166 VLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDG----FIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       166 ~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg----~i~vwd~~~~~~~~~~~~~  239 (536)
                      +.|||+.+. +.-+.+.+.+.|.++.+...++.-. ......+.++++++++.+.+.    ++..-+..+          
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e----------  269 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE----------  269 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc----------
Confidence            445665443 3334577888888887766655332 233556778888888776432    122211110          


Q ss_pred             cccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCC-----ceEeEeeeccccEE--EEeecCCEEEEec--C
Q 009373          240 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRAL-----LKCLKVLRHSDWVY--GLAPHDTTVASTS--G  310 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~v~--~~~~~~~~l~~~~--d  310 (536)
                         ......+.  -..+..+.-++++...  .++.|.+.|..+     .+....+.-.....  .++|+|+++++++  +
T Consensus       270 ---~d~~vvfn--i~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        270 ---RDWVVVFN--IARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             ---CceEEEEc--hHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC
Confidence               00000000  0001111115555554  367899999988     45666666444444  4559999999888  7


Q ss_pred             CcEEEEeCCCCcE------------EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEccc
Q 009373          311 SDVYIWDTNSGCL------------LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  363 (536)
Q Consensus       311 ~~i~i~d~~~~~~------------~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~  363 (536)
                      .++.|+|+.+.+.            .....  -.......+|.++|....+-.-|..|..|++..
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            9999999988653            33332  233445678999998888888899999999876

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.40  E-value=0.00065  Score=60.43  Aligned_cols=238  Identities=13%  Similarity=0.169  Sum_probs=121.6

Q ss_pred             CccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce-Ee----Eeee-c------------cccEEEEe---e--cCCEEE
Q 009373          252 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK-CL----KVLR-H------------SDWVYGLA---P--HDTTVA  306 (536)
Q Consensus       252 h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~-~~----~~~~-~------------~~~v~~~~---~--~~~~l~  306 (536)
                      ....|+++.|  .|.++++|...|.|.+|.-.... |.    ..++ |            ...|..+.   +  ...+|+
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3467889999  56899999999999999754322 11    1121 2            22344444   2  345788


Q ss_pred             EecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee-ccCCCCCeEE
Q 009373          307 STSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNS  385 (536)
Q Consensus       307 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~  385 (536)
                      ++.|.+|++|.+........-.......+    -+|.+.-+.+..   .+++=.+..........+.+. -..|...|++
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~~---~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTSTK---ELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             ecCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCHH---HhhcccccccceEEEeccceeccccceeEeee
Confidence            88899999999876532221111011111    111111010000   000000000000000011111 2578889999


Q ss_pred             EEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeE
Q 009373          386 LAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIV  461 (536)
Q Consensus       386 l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i  461 (536)
                      +.|.. .-.+..+.|=.|.+|++.-....+..         ..+.+  ..+..-...+++..|++.   .+.-.+..|.|
T Consensus       178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnI---------VDiKP--~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNI---------VDIKP--HNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             eeecCchheeeeccceeeeeccccccCCceEE---------EeccC--ccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            99975 33344456778999998753222111         11111  001112233455555554   56666778999


Q ss_pred             EEEeCCchhhHHHHHH----hhhc--ccchhHHHhhhhccccccCCCCccee
Q 009373          462 RIWNFSQAFEIERRAR----ALRG--IRLENRMRRRKLQTEMSSKGGRTDQC  507 (536)
Q Consensus       462 ~vW~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~  507 (536)
                      ++-|+.....-.....    ..-+  ..-....-+.+..+.|+++|+.|++-
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR  298 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR  298 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence            9999984332211111    1111  11233455667889999999999874

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.37  E-value=0.11  Score=55.64  Aligned_cols=190  Identities=16%  Similarity=0.114  Sum_probs=117.1

Q ss_pred             ceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEE
Q 009373          201 CTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVR  276 (536)
Q Consensus       201 ~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~  276 (536)
                      ..|.++.  .+++.++.+..+|.|.+-|.++..              ......-.+.|.+++|  |.+.++..+.++++.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--------------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll  134 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--------------LEIVGNVDNGISAASWSPDEELLALITGRQTLL  134 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccc--------------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence            4666666  678889999999999999876642              2223334678999999  777888888878876


Q ss_pred             EEeC----CCceEe-------------------Eeee-------------c---------cccEEEEe--ecCCEEEEe-
Q 009373          277 VWDR----ALLKCL-------------------KVLR-------------H---------SDWVYGLA--PHDTTVAST-  308 (536)
Q Consensus       277 iwd~----~~~~~~-------------------~~~~-------------~---------~~~v~~~~--~~~~~l~~~-  308 (536)
                      +-+-    -..+.+                   ..+.             +         .+.=++++  .+|.++++. 
T Consensus       135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~  214 (1265)
T KOG1920|consen  135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF  214 (1265)
T ss_pred             EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence            6431    111111                   0111             0         00112244  678888873 


Q ss_pred             ----cC-CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCccccccceeeeccCCC
Q 009373          309 ----SG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       309 ----~d-~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                          .+ ..|++||-+ |..-. ......+.-.+++|-|.|..+++-.   .|+.|.+|.-+.-.. .  .....+....
T Consensus       215 ~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g--~f~l~~p~de  289 (1265)
T KOG1920|consen  215 VESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-G--EFVLPFPLDE  289 (1265)
T ss_pred             EeccCCceeEEEeccc-chhhc-ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-c--ccccCCcccc
Confidence                34 679999987 43322 2223444556899999999988753   456799998543311 1  1122233334


Q ss_pred             CCeEEEEEcC--CeEEE---EeCCCcEEEEECCc
Q 009373          381 GPVNSLAFEF--PWLVS---AAGDGKLSLIDVRK  409 (536)
Q Consensus       381 ~~v~~l~~~~--~~l~s---~s~dg~i~vwd~~~  409 (536)
                      .+|..++|+.  +.|++   ......|++|-+.+
T Consensus       290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             cchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            4589999964  56665   44445599998875

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.36  E-value=7.3e-05  Score=72.86  Aligned_cols=194  Identities=13%  Similarity=0.148  Sum_probs=118.0

Q ss_pred             ccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEe-Eee--eccccEEEEe---ecCCEEEEec-----CCcEEEEe
Q 009373          253 EGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCL-KVL--RHSDWVYGLA---PHDTTVASTS-----GSDVYIWD  317 (536)
Q Consensus       253 ~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~-~~~--~~~~~v~~~~---~~~~~l~~~~-----d~~i~i~d  317 (536)
                      ...+.|+++    +...++.|..+|.|.+-..+..... ..+  .+....++++   -+.+.|++|-     +..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            345666665    2246788999999999877654333 222  2566677776   3456777775     35699999


Q ss_pred             CCCC--cEE--EEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc---C
Q 009373          318 TNSG--CLL--TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE---F  390 (536)
Q Consensus       318 ~~~~--~~~--~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~  390 (536)
                      +.++  .+.  ..+..+......+++|..+.+++.+|.....+.++|++...       .....-.+..+..+..+   +
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------~~~~svnTk~vqG~tVdp~~~  208 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------DSVSSVNTKYVQGITVDPFSP  208 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-------hhhhhhhhhhcccceecCCCC
Confidence            9887  222  22222234456689999889999999999999999998542       11111223345555555   4


Q ss_pred             CeEEEEeCCCcEEEEE-CCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEec-CCCeEEEEe
Q 009373          391 PWLVSAAGDGKLSLID-VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGG-EEGIVRIWN  465 (536)
Q Consensus       391 ~~l~s~s~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~-~Dg~i~vW~  465 (536)
                      +++++-. ||.|.+|| .++.+.+.......              -......++.+++.+.   .+++.. ..++|++++
T Consensus       209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~--------------~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd  273 (783)
T KOG1008|consen  209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRN--------------ENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD  273 (783)
T ss_pred             Cceeccc-cCceeeccchhhhccHHHHHhhC--------------CCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence            7887776 99999999 44432221111000              0001123556666554   455444 457889998


Q ss_pred             CCc
Q 009373          466 FSQ  468 (536)
Q Consensus       466 ~~~  468 (536)
                      +..
T Consensus       274 i~~  276 (783)
T KOG1008|consen  274 ICV  276 (783)
T ss_pred             ccc
Confidence            763

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=97.35  E-value=0.00013  Score=63.37  Aligned_cols=78  Identities=22%  Similarity=0.346  Sum_probs=60.6

Q ss_pred             cccccCCcHHHHHHHhcCC-ChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhh
Q 009373           61 RSTITDLPPALISEILNCL-DPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVER  138 (536)
Q Consensus        61 ~~~l~~Lp~ei~~~I~~~L-~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~  138 (536)
                      -..+.+||.|+.+.|+..| |..||..++||--..+.+.++..+||+++.-+|....-......+......||.+|...
T Consensus       199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L  277 (332)
T KOG3926|consen  199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQL  277 (332)
T ss_pred             CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence            3458899999999999766 79999999999999999999999999987766753332223333444457899998763

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.33  E-value=0.0011  Score=65.70  Aligned_cols=114  Identities=18%  Similarity=0.243  Sum_probs=83.7

Q ss_pred             EEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          295 VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       295 v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      .+|++..+++++.|+ -|.+++|+-..++....-..+..+.+..+..+++..++|+|+..|.|.++-+........ ..+
T Consensus        38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~-~~~  116 (726)
T KOG3621|consen   38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL-DYV  116 (726)
T ss_pred             EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc-eee
Confidence            356667777777777 577888877766655444344556677778899999999999999999999887533222 222


Q ss_pred             ee-ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          374 AT-WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       374 ~~-~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      .. -..|...|+++.|++  ..+++|..-|+|..-.+.+
T Consensus       117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            22 234788999999986  6899999999999988876

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.28  E-value=0.0058  Score=63.68  Aligned_cols=135  Identities=16%  Similarity=0.131  Sum_probs=97.1

Q ss_pred             eCCCcEEEEECCCCceeeeeCCCCc-eEEEEecC-------CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          177 GYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAAD-------KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       177 s~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~-------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      .....|+-.|++.|+.+..+..+.. ++..+.|+       +...+.|-.+..+..||.+-....+.       ..... 
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-------~~~~k-  572 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-------DSQSK-  572 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-------ecccc-
Confidence            4567899999999999999987764 48888764       34567888889999999864321110       00011 


Q ss_pred             eeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEecCCcEEEEeCC
Q 009373          249 LWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN  319 (536)
Q Consensus       249 ~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~  319 (536)
                      .........|++- ..++|+.|+.+|.||+||--..+....+. ...+|..|.  .+|++++++++..+.+++..
T Consensus       573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence            1133456777777 66899999999999999954333333343 578898887  89999999999999998863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.27  E-value=0.16  Score=47.35  Aligned_cols=190  Identities=15%  Similarity=0.127  Sum_probs=112.7

Q ss_pred             EEEecCCCEEEEEe--CCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373          164 VFVLASAKLLFTSG--YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  241 (536)
Q Consensus       164 v~~~~~~~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  241 (536)
                      .+++.|+++++...  --..|.|-|+..++.+..+...++...--. .++.+.+-+.||++.-..+......        
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~--------  170 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKE--------  170 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSE--------
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec-CCCceEEEecCCceEEEEECCCCCE--------
Confidence            45677888766543  345688888888888877765544322212 2346888899999988888643211        


Q ss_pred             cccceEEeeCCccCEE-EEEE--eCCEEEEEecCCeEEEEeCCCceEe--Eeee-------------ccccEEEEee-cC
Q 009373          242 KQNTQFRLWEHEGPIT-SLAL--DLTRIYSGSWDMTVRVWDRALLKCL--KVLR-------------HSDWVYGLAP-HD  302 (536)
Q Consensus       242 ~~~~~~~~~~h~~~v~-~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~-------------~~~~v~~~~~-~~  302 (536)
                      .......+..-..++. .-++  .++.++.-+.+|.|+--|+......  ..+.             ..-.+.++.+ .+
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence            1111111222223332 2222  3456777888899988887654322  1221             1113455553 34


Q ss_pred             CEEEEec---CC-------cEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEE-EcCCCcEEEEEcccC
Q 009373          303 TTVASTS---GS-------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFT-GGEDGAIHMYEIIND  364 (536)
Q Consensus       303 ~~l~~~~---d~-------~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~t-g~~dg~i~iwd~~~~  364 (536)
                      ++++.-.   ++       .|-++|+.+++.+.++.  -..++.++..+.+.+ +|++ ...++.+.+||..++
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG  322 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG  322 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence            4443322   12       38899999999999986  345677899998775 5544 456899999999998

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.17  E-value=0.054  Score=41.33  Aligned_cols=97  Identities=13%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             EEEEEEec-CC---CEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          161 VLTVFVLA-SA---KLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       161 V~~v~~~~-~~---~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      |++|++.. ++   +.|+.||.|..||+|+-+  +.+..+.. ...+..+. ..+..++.|..+|+|-+|+-..      
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCcc------
Confidence            66777664 22   589999999999999944  44444443 34455555 4557899999999999997422      


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE-eC-----CEEEEEecCCeEE
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL-DL-----TRIYSGSWDMTVR  276 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~-----~~l~s~s~dg~i~  276 (536)
                               ....... ...++++++ |-     ..|++|-.+|.|-
T Consensus        73 ---------RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   73 ---------RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ---------eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                     2222222 233666666 22     2688888888764

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.15  E-value=0.011  Score=61.65  Aligned_cols=136  Identities=11%  Similarity=0.087  Sum_probs=88.0

Q ss_pred             CEEEEE-eCCCcEEEEEcccCccceecccCcccccceEEeeCCcc-CEEEEEE-------eCCEEEEEecCCeEEEEeCC
Q 009373          211 KLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG-PITSLAL-------DLTRIYSGSWDMTVRVWDRA  281 (536)
Q Consensus       211 ~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~-------~~~~l~s~s~dg~i~iwd~~  281 (536)
                      ++|+.. .....|+-.|++.|+             .+.....|.. +|..++.       .+...+.|-.+..+..||.+
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GK-------------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR  560 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGK-------------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR  560 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCc-------------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence            344433 345778888887764             3444444443 3677765       23456778888999999988


Q ss_pred             Cce--EeE----eeeccccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373          282 LLK--CLK----VLRHSDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       282 ~~~--~~~----~~~~~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      -..  ++.    .+.......|++ ...-+||+|+ +|.||+||- .|+.-.+...+...+|..|..+.||++|++.+ +
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~  638 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-K  638 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-c
Confidence            532  221    122444556666 3334555555 899999994 44444444446788999999999999987765 4


Q ss_pred             CcEEEEEc
Q 009373          354 GAIHMYEI  361 (536)
Q Consensus       354 g~i~iwd~  361 (536)
                      ..+.+++.
T Consensus       639 tyLlLi~t  646 (794)
T PF08553_consen  639 TYLLLIDT  646 (794)
T ss_pred             ceEEEEEE
Confidence            56777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=97.05  E-value=0.0018  Score=38.70  Aligned_cols=37  Identities=32%  Similarity=0.653  Sum_probs=31.5

Q ss_pred             EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      ....+. .|...|.++.|++.+..+++++.|+.+++|+
T Consensus         4 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            444453 5888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.02  E-value=0.017  Score=58.80  Aligned_cols=68  Identities=12%  Similarity=0.063  Sum_probs=58.2

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcc
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      +++++|+|..-.|+.|-.-|.+.+|...+.+.......|..++  +.++++|+.++++..-|.|.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            5679999999999999999999999988877666666676655  5667999999999999999999875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.88  E-value=0.31  Score=43.83  Aligned_cols=178  Identities=15%  Similarity=0.091  Sum_probs=107.5

Q ss_pred             EEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeeeeCCCC-ceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          161 VLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPLG-CTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~~-~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.+|+......-.. .---.+. .++....-.=.++...+||..+-+     
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~-----  121 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK-----  121 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE-----
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccce-----
Confidence            34677767788888887766  78999999998765542211 1111122 233444445567888888876532     


Q ss_pred             ccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEE---Ee-ecCCEEEEec
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYG---LA-PHDTTVASTS  309 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~---~~-~~~~~l~~~~  309 (536)
                              ...++ ...+.=..++.+++.|+.......+.++|..+.+....+.   ...+|..   +. .+|...+-.-
T Consensus       122 --------~~~~~-~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW  192 (264)
T PF05096_consen  122 --------KIGTF-PYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVW  192 (264)
T ss_dssp             --------EEEEE-E-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEET
T ss_pred             --------EEEEE-ecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC
Confidence                    22222 2234556777888888888888899999999888877776   3334443   33 4454444444


Q ss_pred             -CCcEEEEeCCCCcEEEEEcc--------------ccccceEEEEEeCCCCEEEEEcC
Q 009373          310 -GSDVYIWDTNSGCLLTVVNG--------------AHVGNTKSLARSHTGDFLFTGGE  352 (536)
Q Consensus       310 -d~~i~i~d~~~~~~~~~~~~--------------~~~~~i~~l~~~~~~~~l~tg~~  352 (536)
                       ...|...|..+|+....+.-              ....-.+.++++|..+.|...+.
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence             67899999999998877631              01345889999998765554443

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.88  E-value=0.32  Score=43.89  Aligned_cols=200  Identities=12%  Similarity=0.096  Sum_probs=101.9

Q ss_pred             eeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCC---ceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373          152 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      +.+.+-.+.+..++|+|+.+ ++++....+.|...+. +|+.++.+.-.+   ..-.++.-++.++++.-.++.+.+.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            46677777899999999755 6667777888888886 477777663322   223333355556665556899999988


Q ss_pred             ccCccceecccCcccccceEE--e-eCCccCEEEEEEeC--CEEEEEecCCeEEEEeCCC---ceEeEeee---------
Q 009373          228 VEVLPHLFDISGSEKQNTQFR--L-WEHEGPITSLALDL--TRIYSGSWDMTVRVWDRAL---LKCLKVLR---------  290 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~--~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~iwd~~~---~~~~~~~~---------  290 (536)
                      ......+..     .......  + ..++..+-.++|+.  +.|+.+-......+|.+..   ........         
T Consensus        94 ~~~~~~~~~-----~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~  168 (248)
T PF06977_consen   94 DDDTTSLDR-----ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL  168 (248)
T ss_dssp             ----TT--E-----EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred             eccccccch-----hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence            443211100     0000111  1 13556789999944  6777777777777776643   22222111         


Q ss_pred             ccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcEEEEEc--ccc------ccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          291 HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVN--GAH------VGNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       291 ~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~--~~~------~~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                      ....+.+++  | .+++++.+. +..+..+| .+|+.+..+.  .+.      -.+.-.|+|.++|.+.+++ +-+..++
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence            112234444  3 355666655 67788899 6777666553  211      1367889999998755554 5555554


Q ss_pred             E
Q 009373          359 Y  359 (536)
Q Consensus       359 w  359 (536)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            4

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.83  E-value=0.00056  Score=63.96  Aligned_cols=44  Identities=27%  Similarity=0.533  Sum_probs=41.5

Q ss_pred             ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHH
Q 009373           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~  107 (536)
                      ...||+|+++++|++||..+|++++++|+.|+.++.|..-|..+
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i  115 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI  115 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence            45699999999999999999999999999999999999999875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.75  E-value=0.4  Score=43.19  Aligned_cols=176  Identities=15%  Similarity=0.093  Sum_probs=101.3

Q ss_pred             cCCCEEEEEeCCC--cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEE-EEecCCeEEEEeCCCce
Q 009373          208 ADKKLLVAGGTDG--FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY-SGSWDMTVRVWDRALLK  284 (536)
Q Consensus       208 ~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~s~dg~i~iwd~~~~~  284 (536)
                      .++.++-+.+.-|  .|+.+|+.+++..           ....+ ...---..++.-++.|+ -.=.++...+||..+.+
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~-----------~~~~l-~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~  121 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVL-----------QSVPL-PPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLK  121 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEE-----------EEEE--TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEE-----------EEEEC-CccccceeEEEECCEEEEEEecCCeEEEEccccce
Confidence            5666777777666  6888998887421           11111 11112233444344444 34467889999999999


Q ss_pred             EeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccc----cccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          285 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       285 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      .+.++.....=..++.++..|+.+. ...++++|..+.+....+.-.    .-..++-+.+- +|...|=.-....|...
T Consensus       122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I  200 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI  200 (264)
T ss_dssp             EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence            9999987777778887777766666 688999999988777666421    12245566665 56666666666778888


Q ss_pred             EcccCccccccce--e-e------eccCCCCCeEEEEEcC---CeEEEE
Q 009373          360 EIINDCTEANVLL--V-A------TWIPHTGPVNSLAFEF---PWLVSA  396 (536)
Q Consensus       360 d~~~~~~~~~~~~--~-~------~~~~h~~~v~~l~~~~---~~l~s~  396 (536)
                      |..++........  + .      ...+.....+.||++|   .+++||
T Consensus       201 dp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  201 DPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             ETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            8877743221100  0 0      0011246789999976   355555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA03098 kelch-like protein; Provisional

Probab=96.70  E-value=0.2  Score=51.77  Aligned_cols=184  Identities=11%  Similarity=0.038  Sum_probs=92.4

Q ss_pred             CCCEEEEEeCCC------cEEEEECCCCceeee--eCCCCceEEEEecCCCEEEEEeCC-----CcEEEEEcccCcccee
Q 009373          169 SAKLLFTSGYDS------IVRMWHLEDGFSIAS--SKPLGCTIRAVAADKKLLVAGGTD-----GFIHCWRAVEVLPHLF  235 (536)
Q Consensus       169 ~~~~l~sgs~dg------~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~  235 (536)
                      ++.+++.|+.++      .+..||..+.+-...  +............++..++.||.+     ..+..||..++...  
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~--  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWR--  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCcee--
Confidence            466777777543      577788776643221  111111222334577788888875     34667776654311  


Q ss_pred             cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC------CeEEEEeCCCceEeEeee---ccccEEEEeecCCEEE
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD------MTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVA  306 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~  306 (536)
                               ....+............++..++.|+.+      ..+..||..+.+-...-.   ......++..++.+++
T Consensus       372 ---------~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv  442 (534)
T PHA03098        372 ---------EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV  442 (534)
T ss_pred             ---------eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE
Confidence                     1111111111112223466666777632      457889987654332211   1111122335666666


Q ss_pred             Eec-C--------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccC
Q 009373          307 STS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND  364 (536)
Q Consensus       307 ~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~  364 (536)
                      .|+ +        ..+.+||..+++....-.......-.+++. -++.+++.|+.+     ..+.+||+.+.
T Consensus       443 ~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        443 IGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             ECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            665 2        128889998876443211111111111222 256777777764     46888887765

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.69  E-value=1.1  Score=47.37  Aligned_cols=303  Identities=11%  Similarity=0.088  Sum_probs=153.6

Q ss_pred             cccEEEEEEecCC------CEEEEEeCCCcEEEEEC-CCCceeeee--CCC--CceE--EEEecCCCEEEEEeCCCcEEE
Q 009373          158 TEAVLTVFVLASA------KLLFTSGYDSIVRMWHL-EDGFSIASS--KPL--GCTI--RAVAADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       158 ~~~V~~v~~~~~~------~~l~sgs~dg~v~iwd~-~~~~~~~~~--~~~--~~~v--~~~~~~~~~l~sg~~dg~i~v  224 (536)
                      ...|.|+.++|-|      ++++.|.++..+.+--. .+...+...  .+.  .-.+  .++.-+..+|.++..||.+.-
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            4578999999742      38999998877665543 333322222  111  1122  334456889999999999988


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe-
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA-  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~-  299 (536)
                      +.+....-...+         .....-...++.--.|  .+..-+.+..|+-..+|-.+..-+...+.  .-..+..+. 
T Consensus       610 fv~d~~tg~lsd---------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s  680 (1096)
T KOG1897|consen  610 FVLDINTGQLSD---------RKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNS  680 (1096)
T ss_pred             EEEEcccceEcc---------ccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhccccc
Confidence            766543211111         1101112334444444  33333444456666666554333333332  222333333 


Q ss_pred             -ecCCEEEEecCCcEEEEeCCCCc--EEEEEccccccceEEEEEeCCCCEEEEEcC-----------CC---cEEEEEcc
Q 009373          300 -PHDTTVASTSGSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGDFLFTGGE-----------DG---AIHMYEII  362 (536)
Q Consensus       300 -~~~~~l~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-----------dg---~i~iwd~~  362 (536)
                       .-+..++.+..+.+.+.-+..-+  .++++.  -......+++.+....+++.+.           ..   .++++|-.
T Consensus       681 ~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n  758 (1096)
T KOG1897|consen  681 DAYPDSLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN  758 (1096)
T ss_pred             ccCCceEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC
Confidence             33556777777887777655422  233332  4445667777764444444332           11   24555544


Q ss_pred             cCccccccceeeeccCC--CCCeEEEEEc--C-CeEEEEeC----------CCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          363 NDCTEANVLLVATWIPH--TGPVNSLAFE--F-PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       363 ~~~~~~~~~~~~~~~~h--~~~v~~l~~~--~-~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      +-..    .....+...  ...|.+..|.  | .+++.|..          .|.|.|+.+....                
T Consensus       759 Tf~v----l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~----------------  818 (1096)
T KOG1897|consen  759 TFEV----LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN----------------  818 (1096)
T ss_pred             ceeE----EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC----------------
Confidence            3310    111111111  1234444563  2 46666653          3556666554411                


Q ss_pred             eCCCeeeecc--ccccEEEEE-ecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCc
Q 009373          428 VEPPQRMLHG--FECNLLSVD-IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT  504 (536)
Q Consensus       428 ~~~~~~~~~~--~~~~v~~~~-~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  504 (536)
                         .....+.  -.+.+.++. +++.++|.-+  ..|++|++.++++++......          .....+...-.|..+
T Consensus       819 ---~L~~v~e~~v~Gav~aL~~fngkllA~In--~~vrLye~t~~~eLr~e~~~~----------~~~~aL~l~v~gdeI  883 (1096)
T KOG1897|consen  819 ---SLELVAETVVKGAVYALVEFNGKLLAGIN--QSVRLYEWTTERELRIECNIS----------NPIIALDLQVKGDEI  883 (1096)
T ss_pred             ---ceeeeeeeeeccceeehhhhCCeEEEecC--cEEEEEEccccceehhhhccc----------CCeEEEEEEecCcEE
Confidence               1111111  223445544 5666666554  589999999986665444332          223455666666666


Q ss_pred             ce
Q 009373          505 DQ  506 (536)
Q Consensus       505 ~~  506 (536)
                      ++
T Consensus       884 ~V  885 (1096)
T KOG1897|consen  884 AV  885 (1096)
T ss_pred             EE
Confidence            66

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.69  E-value=0.78  Score=45.64  Aligned_cols=231  Identities=16%  Similarity=0.099  Sum_probs=118.3

Q ss_pred             cEEEEEEecCCCEEEEE-eCCC----cEEEEECCCCceeeee-CCCCceEEEEecCCCEEEEEeCCC-----------cE
Q 009373          160 AVLTVFVLASAKLLFTS-GYDS----IVRMWHLEDGFSIASS-KPLGCTIRAVAADKKLLVAGGTDG-----------FI  222 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sg-s~dg----~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sg~~dg-----------~i  222 (536)
                      .+....++|+|+++|-+ +..|    +++++|+++|+.+... ......-..+.++++.|+....+.           .|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            44467899999988854 3334    5999999999776533 222222267778877665554333           36


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccC--EEEEEE--eCCEEEEEecC----CeEEEEeCCCc-----eEeEee
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP--ITSLAL--DLTRIYSGSWD----MTVRVWDRALL-----KCLKVL  289 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~--~~~~l~s~s~d----g~i~iwd~~~~-----~~~~~~  289 (536)
                      +.|++.++.           ......+......  ...+..  ++++++..+..    ..+.+.|+..+     ......
T Consensus       205 ~~~~~gt~~-----------~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~  273 (414)
T PF02897_consen  205 YRHKLGTPQ-----------SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS  273 (414)
T ss_dssp             EEEETTS-G-----------GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE
T ss_pred             EEEECCCCh-----------HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe
Confidence            777775542           1112233333322  445555  66776543322    34777788764     233333


Q ss_pred             ecc-ccEEEEeecCC-EEEEec----CCcEEEEeCCCCcE---EEEEcccccc--ceEEEEEeCCCCEEEE-EcCCC--c
Q 009373          290 RHS-DWVYGLAPHDT-TVASTS----GSDVYIWDTNSGCL---LTVVNGAHVG--NTKSLARSHTGDFLFT-GGEDG--A  355 (536)
Q Consensus       290 ~~~-~~v~~~~~~~~-~l~~~~----d~~i~i~d~~~~~~---~~~~~~~~~~--~i~~l~~~~~~~~l~t-g~~dg--~  355 (536)
                      ... +....+...+. +++.+.    .+.|.-.++.....   ...+. .+..  .+..+..  .+++|+. ...++  .
T Consensus       274 ~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~  350 (414)
T PF02897_consen  274 PREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSR  350 (414)
T ss_dssp             ESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEE
T ss_pred             CCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccE
Confidence            333 33344443344 444443    25677788887652   22332 3444  3444443  4555544 44444  4


Q ss_pred             EEEEEcc-cCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeC---CCcEEEEECCcc
Q 009373          356 IHMYEII-NDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAG---DGKLSLIDVRKL  410 (536)
Q Consensus       356 i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~---dg~i~vwd~~~~  410 (536)
                      |+++++. ..      ........-.+.|..+..++   .+.++.+.   =++++.||+.++
T Consensus       351 l~v~~~~~~~------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~  406 (414)
T PF02897_consen  351 LRVYDLDDGK------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG  406 (414)
T ss_dssp             EEEEETT-TE------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEEEECCCCc------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            8888888 33      11111122234455555432   23333332   256778888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.021  Score=59.93  Aligned_cols=68  Identities=19%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-----cCCCEEEEEeCCCcEEEEEc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-----ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-----~~~~~l~sg~~dg~i~vwd~  227 (536)
                      .++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..++.+...+-     .++..++++...|.  +|.+
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            57899999999999999999999999999999988887766555443332     33446777777776  5654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.62  E-value=0.34  Score=49.53  Aligned_cols=105  Identities=14%  Similarity=0.042  Sum_probs=65.3

Q ss_pred             eCCEEEEEecCCeEEEEeCCCceEeEeeeccc--cEE----------EEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEc
Q 009373          262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVY----------GLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN  328 (536)
Q Consensus       262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~----------~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  328 (536)
                      .++.++.++.++.|.-.|..+++.+..+....  .+.          .+. .+++.++...++.+.-+|..+|+.+-...
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            46778888888999999999999988776321  111          122 23444544459999999999999987764


Q ss_pred             cccccceEEEEEeC--CCCEEEEEcC------CCcEEEEEcccCcc
Q 009373          329 GAHVGNTKSLARSH--TGDFLFTGGE------DGAIHMYEIINDCT  366 (536)
Q Consensus       329 ~~~~~~i~~l~~~~--~~~~l~tg~~------dg~i~iwd~~~~~~  366 (536)
                      ......-..+.-+|  .+..++++..      +|.|.-+|..+++.
T Consensus       148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCce
Confidence            22111001111111  1234555432      68899999988743

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.008  Score=62.84  Aligned_cols=107  Identities=18%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             ccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373          293 DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       293 ~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                      ..+.+.+..+..++.|+ .|.+...|.+..-....-...-.++|++++|+.+|..++.|-.+|.|.+||+..+      +
T Consensus        90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~------k  163 (1206)
T KOG2079|consen   90 AGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA------K  163 (1206)
T ss_pred             cceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC------c
Confidence            34444555566667776 6888888887642211111234678999999999999999999999999999988      5


Q ss_pred             eeeeccCCCCCeEEEEEc----C-CeEEEEeCCCcEEEEEC
Q 009373          372 LVATWIPHTGPVNSLAFE----F-PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~----~-~~l~s~s~dg~i~vwd~  407 (536)
                      .++.+..|..+.+++-+.    . ..++++..-|.  +|.+
T Consensus       164 ~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  164 ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            667777777777666653    2 45777777776  5554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.52  E-value=0.0091  Score=37.82  Aligned_cols=34  Identities=15%  Similarity=0.060  Sum_probs=29.9

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS  192 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~  192 (536)
                      ...|.+++|+|..+++|.|+.||.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999998 5544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=1  Score=44.16  Aligned_cols=188  Identities=18%  Similarity=0.184  Sum_probs=124.8

Q ss_pred             EEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEEEeC---CCcEEEEEcccCccceec
Q 009373          162 LTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       162 ~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~  236 (536)
                      ..++.++.++ ..++...++.|.+.|..+........ +....-..+.++++.++++..   ++++.+.|..+..     
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-----  151 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-----  151 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-----
Confidence            4567777777 45555556899999988777766653 334455677788887777665   6788888876653     


Q ss_pred             ccCcccccceEEeeCCccCEEEEEE--eCCEEEEE-ecCCeEEEEeCCCceEeE-e----ee--ccccEEEEeecCCEEE
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSG-SWDMTVRVWDRALLKCLK-V----LR--HSDWVYGLAPHDTTVA  306 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~-s~dg~i~iwd~~~~~~~~-~----~~--~~~~v~~~~~~~~~l~  306 (536)
                              .......-..+ ..+++  +++.++.+ ..++.|.+.|..+..... .    ..  .......+.+++..+.
T Consensus       152 --------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y  222 (381)
T COG3391         152 --------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY  222 (381)
T ss_pred             --------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEE
Confidence                    22222222233 66666  66755544 478999999987766553 1    22  2233455668888666


Q ss_pred             Eec--C--CcEEEEeCCCCcEEEE-EccccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccC
Q 009373          307 STS--G--SDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIIND  364 (536)
Q Consensus       307 ~~~--d--~~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~  364 (536)
                      ...  +  +.+...|..++..... ...+.. ....+..+|+|..+.+... .+.+.+.|..+.
T Consensus       223 V~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         223 VANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             EEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            655  2  4899999998877765 222222 5667889999998887744 488999998776

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.41  E-value=1.1  Score=44.19  Aligned_cols=144  Identities=17%  Similarity=0.099  Sum_probs=74.7

Q ss_pred             cCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee---c-----cccEEEEe-ecCCEEEEecCCcEEEEeCCCCc-
Q 009373          254 GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR---H-----SDWVYGLA-PHDTTVASTSGSDVYIWDTNSGC-  322 (536)
Q Consensus       254 ~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~-----~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~-  322 (536)
                      +.|.++.| +...|+....||.+++||+.... ...+.   .     ...+.... .+.-.++...++.+.+.+-.... 
T Consensus        81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~  159 (410)
T PF04841_consen   81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPV  159 (410)
T ss_pred             CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccc
Confidence            78999999 66788899999999999986333 11111   1     11122222 21223344445555444322221 


Q ss_pred             EEEEE---ccc----ccc-ceEE-EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C
Q 009373          323 LLTVV---NGA----HVG-NTKS-LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P  391 (536)
Q Consensus       323 ~~~~~---~~~----~~~-~i~~-l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~  391 (536)
                      ..+.+   ...    +.. .... ..++.+....+....++.+.+.+-...      ..    ....+++..++.+|  +
T Consensus       160 ~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~------~~----i~~~~~i~~iavSpng~  229 (410)
T PF04841_consen  160 KLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF------KQ----IDSDGPIIKIAVSPNGK  229 (410)
T ss_pred             hhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc------cc----ccCCCCeEEEEECCCCC
Confidence            11111   100    000 0000 223444444444445555554442221      01    12346899999986  6


Q ss_pred             eEEEEeCCCcEEEEECC
Q 009373          392 WLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       392 ~l~s~s~dg~i~vwd~~  408 (536)
                      +|+.-..+|.+.+....
T Consensus       230 ~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  230 FIALFTDSGNLWVVSSD  246 (410)
T ss_pred             EEEEEECCCCEEEEECc
Confidence            88888888998887643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.35  E-value=0.024  Score=56.02  Aligned_cols=73  Identities=16%  Similarity=0.040  Sum_probs=61.2

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE---EEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI---RAVAADKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v---~~~~~~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      ...|.-+.|+|.-.++|++..+|.|-+..+. .+.+.++..++..+   +|+.|||+.|++|-.||+|++-|++++.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            3457788999999999999999999999887 77777776555444   4666999999999999999999998764

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.76  Score=41.53  Aligned_cols=120  Identities=17%  Similarity=0.229  Sum_probs=83.5

Q ss_pred             eEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccc-cceEEEEEeCCCCEEEEEcCCCcEEEEEccc
Q 009373          286 LKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  363 (536)
Q Consensus       286 ~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~  363 (536)
                      +..+...+-+..+...++++..+. +..++++|+.+......+..-.. +--+++..  .|++..++..|.-+.+.|+.+
T Consensus        80 ~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsd  157 (370)
T COG5276          80 LSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             EEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCC
Confidence            334445555666667777777777 68899999988765444321112 33344444  588888888666688999988


Q ss_pred             CccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +..   +............-..++.++++-+.+..|+-+.+-|+...
T Consensus       158 pss---P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp  201 (370)
T COG5276         158 PSS---PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNP  201 (370)
T ss_pred             CCC---ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCC
Confidence            743   24444555555556788899999999999999999999874

>PHA02790 Kelch-like protein; Provisional

Probab=96.34  E-value=0.29  Score=49.57  Aligned_cols=182  Identities=12%  Similarity=0.005  Sum_probs=91.8

Q ss_pred             CCCEEEEEeCCC-----cEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeCC--CcEEEEEcccCccceecccC
Q 009373          169 SAKLLFTSGYDS-----IVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD--GFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       169 ~~~~l~sgs~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~  239 (536)
                      ++.+++.|+.++     ++..||..++.-..  .+............++...+.|+.+  .++..||..++.        
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~--------  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAA--------  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCe--------
Confidence            456677787653     46678877654222  2221111222234677777888764  357777764432        


Q ss_pred             cccccceEEeeCCccCEEEEEEeCCEEEEEecCC---eEEEEeCCCceEeEee--ecc-ccEEEEeecCCEEEEecCCcE
Q 009373          240 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM---TVRVWDRALLKCLKVL--RHS-DWVYGLAPHDTTVASTSGSDV  313 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~--~~~-~~v~~~~~~~~~l~~~~d~~i  313 (536)
                         ......+............++...+.|+.++   .+..||..+.+-...-  ... .....+..++++.+.|  |.+
T Consensus       343 ---W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~  417 (480)
T PHA02790        343 ---WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNA  417 (480)
T ss_pred             ---EEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--Cce
Confidence               1111111111112223344777777777654   4678887765433221  111 1112223566666665  356


Q ss_pred             EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccC
Q 009373          314 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND  364 (536)
Q Consensus       314 ~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~  364 (536)
                      .+||..+++-...-...+...-.+++. -++++.+.|+.+     ..+..||..++
T Consensus       418 e~ydp~~~~W~~~~~m~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EEecCCCCcEeEcCCCCCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            789988775443221111111112222 356777888754     34667776655

>PHA03098 kelch-like protein; Provisional

Probab=96.33  E-value=0.23  Score=51.28  Aligned_cols=189  Identities=11%  Similarity=0.017  Sum_probs=92.4

Q ss_pred             EEecCCCEEEEEeCCC------cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC-----C
Q 009373          205 AVAADKKLLVAGGTDG------FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----M  273 (536)
Q Consensus       205 ~~~~~~~~l~sg~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g  273 (536)
                      ++..++..++.|+.++      .+..||..+....           ....+.........+..++..++.|+.+     .
T Consensus       290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-----------~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~  358 (534)
T PHA03098        290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-----------KVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLN  358 (534)
T ss_pred             EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee-----------ECCCCCcccccceEEEECCEEEEEeCCCCCEecc
Confidence            3446677778887653      4667776654311           1101111111222334477777777765     3


Q ss_pred             eEEEEeCCCceEeEe--eeccc-cEEEEeecCCEEEEec-C------CcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373          274 TVRVWDRALLKCLKV--LRHSD-WVYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  343 (536)
Q Consensus       274 ~i~iwd~~~~~~~~~--~~~~~-~v~~~~~~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~  343 (536)
                      .+..||..+.+-...  +.... .......++.+++.|+ +      ..+..||+.+++....-.......-.++. ..+
T Consensus       359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~  437 (534)
T PHA03098        359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHD  437 (534)
T ss_pred             eEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EEC
Confidence            577788776543221  11111 1112235666666665 2      35889998876543221100111111222 235


Q ss_pred             CCEEEEEcCCC--------cEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCc
Q 009373          344 GDFLFTGGEDG--------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  409 (536)
Q Consensus       344 ~~~l~tg~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  409 (536)
                      +.+++.|+.++        .+.+||..+..=    ..+..+.........+.+++..++.|+.+     ..|.+||..+
T Consensus       438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKW----TELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CEEEEECCccCCCCCcccceEEEecCCCCce----eeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence            66667776432        378888876521    11211111112222334455666666654     4677888765

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.31  E-value=0.0078  Score=51.77  Aligned_cols=138  Identities=17%  Similarity=0.090  Sum_probs=78.8

Q ss_pred             EEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEE-EEEccccccceEEEEE
Q 009373          265 RIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLL-TVVNGAHVGNTKSLAR  340 (536)
Q Consensus       265 ~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~i~~l~~  340 (536)
                      .+..-+.||.|+-++++..+....-.  +... ..+. .+..+++.+++|.|.+|+..-.... ..+..+.......+.-
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~  110 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN  110 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence            35566788999888876543322211  2222 3444 3444444455999999987632111 1111111112222333


Q ss_pred             eCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC-CCeEEEEEc--CCeEEEE--eCCCcEEEEECCc
Q 009373          341 SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFE--FPWLVSA--AGDGKLSLIDVRK  409 (536)
Q Consensus       341 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~--~~~l~s~--s~dg~i~vwd~~~  409 (536)
                      ..++.+..+++.||.|+.|++...      +.+.....|+ .++..+...  ..+++.+  |.|..++.|++..
T Consensus       111 ~~~~~~~c~~~~dg~ir~~n~~p~------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  111 GRDSSLGCVGAQDGRIRACNIKPN------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccceeEEeccCCceeeeccccC------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            345568899999999999998877      4444445555 444444432  3566666  7777777777765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.24  E-value=0.081  Score=51.33  Aligned_cols=135  Identities=17%  Similarity=0.145  Sum_probs=92.4

Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCC-------EEEEEeCCCcEEEEEcccCccceecccCccccc
Q 009373          173 LFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKK-------LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN  244 (536)
Q Consensus       173 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~-------~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  244 (536)
                      |.++..-..++--|++.|+.+....-+.. ++..+.|+.+       .-+.|-.|..|.-||.+-..           ..
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~-----------~~  417 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG-----------KN  417 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccC-----------cc
Confidence            44555556677788999999988877665 6666665432       34567788889999976321           11


Q ss_pred             ceEEeeCC----ccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEe--ecCCEEEEecCCcEEE
Q 009373          245 TQFRLWEH----EGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTVASTSGSDVYI  315 (536)
Q Consensus       245 ~~~~~~~h----~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l~~~~d~~i~i  315 (536)
                      .+....+|    .....|++- ...+++.||.+|-|++||- .+...++ +. ...+|..+.  .+|+.++++++..+.+
T Consensus       418 kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlL  496 (644)
T KOG2395|consen  418 KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLL  496 (644)
T ss_pred             eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEE
Confidence            11122222    234556655 6689999999999999997 4444333 33 667787766  8999999999999888


Q ss_pred             EeCC
Q 009373          316 WDTN  319 (536)
Q Consensus       316 ~d~~  319 (536)
                      .++.
T Consensus       497 i~t~  500 (644)
T KOG2395|consen  497 IDTL  500 (644)
T ss_pred             EEEe
Confidence            8764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.02  Score=56.49  Aligned_cols=85  Identities=18%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceE-EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK-SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      |.-.++|.+. +|.+.+..+. .+.+.++.. +...++ +++|.|||+.|++|-.||+|++.|+..+...     .....
T Consensus        30 P~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l-----~~~~~  102 (665)
T KOG4640|consen   30 PKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL-----VSFLF  102 (665)
T ss_pred             CccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce-----ecccc
Confidence            3334445444 4555555555 344444432 444555 9999999999999999999999999988421     22123


Q ss_pred             CCCCCeEEEEEcCC
Q 009373          378 PHTGPVNSLAFEFP  391 (536)
Q Consensus       378 ~h~~~v~~l~~~~~  391 (536)
                      .-...|.++-|++.
T Consensus       103 s~e~~is~~~w~~~  116 (665)
T KOG4640|consen  103 SVETDISKGIWDRI  116 (665)
T ss_pred             ccccchheeecccc
Confidence            34567777777643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.18  E-value=2.2  Score=45.50  Aligned_cols=68  Identities=18%  Similarity=0.072  Sum_probs=48.1

Q ss_pred             eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEE-------------EEe-----ecCCEEEEec----------CCcE
Q 009373          262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY-------------GLA-----PHDTTVASTS----------GSDV  313 (536)
Q Consensus       262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~-------------~~~-----~~~~~l~~~~----------d~~i  313 (536)
                      .+++++.++.|+.+.-.|.++|+....+...+.|.             .+.     .++..++.++          +|.|
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            44688899999999999999999987765433321             111     2344444432          4679


Q ss_pred             EEEeCCCCcEEEEEcc
Q 009373          314 YIWDTNSGCLLTVVNG  329 (536)
Q Consensus       314 ~i~d~~~~~~~~~~~~  329 (536)
                      +-+|.++|+.+-.+..
T Consensus       339 ~A~Da~TGkl~W~~~~  354 (764)
T TIGR03074       339 RAFDVNTGALVWAWDP  354 (764)
T ss_pred             EEEECCCCcEeeEEec
Confidence            9999999999988753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.11  E-value=2.5  Score=45.17  Aligned_cols=195  Identities=14%  Similarity=0.022  Sum_probs=113.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCce--------EEEEe------------------cCCCEEEEEeCCCcEE
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT--------IRAVA------------------ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~--------v~~~~------------------~~~~~l~sg~~dg~i~  223 (536)
                      +..|+.++.++.|.-.|..+|+.+..+......        +..+.                  ..+..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            667888888999999999999998877543211        10111                  1345888999999999


Q ss_pred             EEEcccCccce-ecccCcccccceEEeeCCcc---CEEE-EEEeCCEEEEEec----------CCeEEEEeCCCceEeEe
Q 009373          224 CWRAVEVLPHL-FDISGSEKQNTQFRLWEHEG---PITS-LALDLTRIYSGSW----------DMTVRVWDRALLKCLKV  288 (536)
Q Consensus       224 vwd~~~~~~~~-~~~~~~~~~~~~~~~~~h~~---~v~~-l~~~~~~l~s~s~----------dg~i~iwd~~~~~~~~~  288 (536)
                      -.|.++|+..- +...+.  ......+.....   .+++ -...++.++.|+.          +|.|+-+|.++|+.+..
T Consensus       274 ALDA~TGk~~W~fg~~G~--vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       274 ALDADTGKLCEDFGNNGT--VDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             EEECCCCCEEEEecCCCc--eeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence            99999886431 111000  000000000000   0111 1224556666643          68999999999999887


Q ss_pred             eecc----------cc-----------EEEEeecCCEEEEec-------------------CCcEEEEeCCCCcEEEEEc
Q 009373          289 LRHS----------DW-----------VYGLAPHDTTVASTS-------------------GSDVYIWDTNSGCLLTVVN  328 (536)
Q Consensus       289 ~~~~----------~~-----------v~~~~~~~~~l~~~~-------------------d~~i~i~d~~~~~~~~~~~  328 (536)
                      +...          +.           ..++.+...+++...                   .++|.-.|.++|+..-.+.
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q  431 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ  431 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence            6511          11           111222222222211                   2457778889998887775


Q ss_pred             cccc-c-------ceEEEEEeC-CCC---EEEEEcCCCcEEEEEcccCcc
Q 009373          329 GAHV-G-------NTKSLARSH-TGD---FLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       329 ~~~~-~-------~i~~l~~~~-~~~---~l~tg~~dg~i~iwd~~~~~~  366 (536)
                      ..|. .       ...-+.+.. +|+   .++.++.+|.+.++|-++++.
T Consensus       432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            4221 1       112222322 553   799999999999999988854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=96.00  E-value=0.48  Score=48.00  Aligned_cols=183  Identities=7%  Similarity=-0.066  Sum_probs=91.4

Q ss_pred             cCCCEEEEEeCCC-----cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC--CeEEEEeC
Q 009373          208 ADKKLLVAGGTDG-----FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD--MTVRVWDR  280 (536)
Q Consensus       208 ~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--g~i~iwd~  280 (536)
                      .++..+++|+.++     ++..||..++..           .....+.........+..++...+.|+.+  .++..||.
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W-----------~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp  338 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNW-----------IPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFH  338 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEE-----------EECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEEC
Confidence            4556677777653     466677655421           11111111111122234467777777754  35778887


Q ss_pred             CCceEeEe--eeccc-cEEEEeecCCEEEEec-C---CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373          281 ALLKCLKV--LRHSD-WVYGLAPHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       281 ~~~~~~~~--~~~~~-~v~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      .+.+-...  +.... .......++++.+.|+ +   ..+..||..+++....-.......-.+++ .-++.+.+.|+  
T Consensus       339 ~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG--  415 (480)
T PHA02790        339 GDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR--  415 (480)
T ss_pred             CCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC--
Confidence            65533221  22111 1222336777777766 3   35778998876544321111111111222 23566666663  


Q ss_pred             CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCc
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  409 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  409 (536)
                       .+.+||..++.    ...+..+.........+..++...+.||.+     ..+..||..+
T Consensus       416 -~~e~ydp~~~~----W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        416 -NAEFYCESSNT----WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             -ceEEecCCCCc----EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence             57789886652    223333332233334455566777777754     3466777665

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.95  E-value=0.014  Score=50.22  Aligned_cols=102  Identities=13%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             eCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEeecC---CEEEEec-CCcEEEEeCCCCcEEEEEccccc-cc
Q 009373          262 DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLAPHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAHV-GN  334 (536)
Q Consensus       262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~  334 (536)
                      .+..++.|+.+|.|.+|+......... +. ....|-++-|.+   .+..++. ++.|+.|++.-++.+.... .|. .+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~  147 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFES  147 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec-cccCCC
Confidence            557789999999999998762211111 11 223333333433   3444444 8999999999888777663 465 44


Q ss_pred             eEEEEEeCCCCEEEEE--cCCCcEEEEEcccC
Q 009373          335 TKSLARSHTGDFLFTG--GEDGAIHMYEIIND  364 (536)
Q Consensus       335 i~~l~~~~~~~~l~tg--~~dg~i~iwd~~~~  364 (536)
                      +..+..+..+..++.+  |.|..++.|++...
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            5555555555666666  66666666766543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.86  E-value=1.8  Score=41.47  Aligned_cols=164  Identities=16%  Similarity=0.121  Sum_probs=78.7

Q ss_pred             ECCCCceeeeeCCCCceEE-------EEecCCCEEEEE-eCCCc--EEEEEcccCccceecccCcccccceEEeeCCcc-
Q 009373          186 HLEDGFSIASSKPLGCTIR-------AVAADKKLLVAG-GTDGF--IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG-  254 (536)
Q Consensus       186 d~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg-~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-  254 (536)
                      |..||..+..+........       ++..+|+.|+.+ ..||.  +.+.|+.++.              ..++....+ 
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--------------i~QLTdg~g~   81 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--------------ITQLTDGPGD   81 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------------EEE---SS-B
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--------------EEECccCCCC
Confidence            5677877777766555443       445677655554 44555  5555666552              222332221 


Q ss_pred             --CEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccE---EEE-eecCCEEEEec----C-------------
Q 009373          255 --PITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV---YGL-APHDTTVASTS----G-------------  310 (536)
Q Consensus       255 --~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v---~~~-~~~~~~l~~~~----d-------------  310 (536)
                        .-..++-+.+.++-......|+-.|+.+.+....+. ....+   +-+ ..++..++...    +             
T Consensus        82 ~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~  161 (386)
T PF14583_consen   82 NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF  161 (386)
T ss_dssp             -TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred             CccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence              112233355666555556788888999887766555 33332   222 24555554432    1             


Q ss_pred             ------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC----c-EEEEEcccCc
Q 009373          311 ------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG----A-IHMYEIINDC  365 (536)
Q Consensus       311 ------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg----~-i~iwd~~~~~  365 (536)
                            ..|.-.|+.+|+....+.  ....+.-+.|+|....+++=+.+|    . -|||-+++..
T Consensus       162 ~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg  225 (386)
T PF14583_consen  162 YEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG  225 (386)
T ss_dssp             HHC---EEEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS
T ss_pred             HhhCCCceEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC
Confidence                  126667888887665553  455677888999766555544333    1 4778777653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.79  E-value=1.7  Score=40.76  Aligned_cols=178  Identities=19%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-e-CCEEEEEecCCeEEEEeCCCceEeEee
Q 009373          212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-D-LTRIYSGSWDMTVRVWDRALLKCLKVL  289 (536)
Q Consensus       212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~-~~~l~s~s~dg~i~iwd~~~~~~~~~~  289 (536)
                      ++.+--..+.|.-|+..++..              ..+ .+.+.+.++.. + +..|+++.  ..+.+++.+++.....+
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~--------------~~~-~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKK--------------RVF-PSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLL  101 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCce--------------EEE-ECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEe
Confidence            445555566777777654421              111 22333444444 3 34555543  33556666555543322


Q ss_pred             e---cc---ccEE--EEeecCCEEEEecC------------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE
Q 009373          290 R---HS---DWVY--GLAPHDTTVASTSG------------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT  349 (536)
Q Consensus       290 ~---~~---~~v~--~~~~~~~~l~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t  349 (536)
                      .   ..   ...+  .+.++|.+.++...            |.++.+|. .+...+.+. .+-...+.++||||++.|..
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~SpDg~tly~  179 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECCCCCEEEE
Confidence            2   11   1222  23377777776443            33555554 455554443 45667789999999987777


Q ss_pred             EcC-CCcEEEEEccc-CccccccceeeeccCCCCCeEEEEEcC-CeEE-EEeCCC-cEEEEECC
Q 009373          350 GGE-DGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAFEF-PWLV-SAAGDG-KLSLIDVR  408 (536)
Q Consensus       350 g~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~-s~s~dg-~i~vwd~~  408 (536)
                      +.. .+.|.-|++.. ............+....+..-.++.+. ..+. ++..+| .|.+|+..
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence            655 47788888763 111111122222223445556666653 3333 444444 88888876

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.62  E-value=0.74  Score=41.41  Aligned_cols=197  Identities=18%  Similarity=0.258  Sum_probs=99.8

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCC-ceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYD-----SIVRMWHLEDG-FSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIH  223 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~d-----g~v~iwd~~~~-~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~  223 (536)
                      +.+.||.      .|+|||.+|+..-.|     |.|-|||...+ +.+..+..|...-  +.+.+||+.++.+..  -|.
T Consensus       113 RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIe  184 (366)
T COG3490         113 RHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIE  184 (366)
T ss_pred             ceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--cee
Confidence            4555663      389999999876544     78999998755 3455555555433  445589998887643  232


Q ss_pred             EE--------EcccCccceeccc-CcccccceEEee--CCccCEEEEEEe-CCEEEEEe-cCCe-----EEEEeCCCceE
Q 009373          224 CW--------RAVEVLPHLFDIS-GSEKQNTQFRLW--EHEGPITSLALD-LTRIYSGS-WDMT-----VRVWDRALLKC  285 (536)
Q Consensus       224 vw--------d~~~~~~~~~~~~-~~~~~~~~~~~~--~h~~~v~~l~~~-~~~l~s~s-~dg~-----i~iwd~~~~~~  285 (536)
                      .-        |+++.++.+.-+. .........++.  .+.-.|..++.+ .+.+..|. ..|.     -.+=-...++.
T Consensus       185 thpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~  264 (366)
T COG3490         185 THPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEP  264 (366)
T ss_pred             cccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCc
Confidence            22        2222221111111 001111112222  334456666662 22222222 1110     01111122333


Q ss_pred             eEeee--------ccccEEEEee--cCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC
Q 009373          286 LKVLR--------HSDWVYGLAP--HDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       286 ~~~~~--------~~~~v~~~~~--~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      +..+.        ....|-+++.  +..+++.++  ++...+||..+|..+..-.-   .....+  .+...-+++.+.+
T Consensus       265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l---~daaGv--a~~~~gf~vssg~  339 (366)
T COG3490         265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL---PDAAGV--AAAKGGFAVSSGQ  339 (366)
T ss_pred             CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc---cccccc--eeccCceEEecCC
Confidence            33332        2345556663  355566555  56788999999987765421   112222  2334456777788


Q ss_pred             CcEEEEEc
Q 009373          354 GAIHMYEI  361 (536)
Q Consensus       354 g~i~iwd~  361 (536)
                      |.+.++.-
T Consensus       340 G~~~~~s~  347 (366)
T COG3490         340 GRIIFYSR  347 (366)
T ss_pred             ceEEeccc
Confidence            99988853

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.7  Score=39.52  Aligned_cols=168  Identities=19%  Similarity=0.157  Sum_probs=96.6

Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCceeeeeCCCCceEEE--EecCCCEEE-EEeCCCcEEEEEcccCccceecccCcccc
Q 009373          169 SAKLLFTSGY--DSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDISGSEKQ  243 (536)
Q Consensus       169 ~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  243 (536)
                      +|.++.+.+.  ...|++||+.+|+.+....-....+..  +..-++.+. -.-.+|.-..+|..+.+            
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~------------  122 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE------------  122 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh------------
Confidence            4566666554  346999999999887654322111111  111223222 23345666677765432            


Q ss_pred             cceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe----ecCCEEEEec-CCcEEE
Q 009373          244 NTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA----PHDTTVASTS-GSDVYI  315 (536)
Q Consensus       244 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~----~~~~~l~~~~-d~~i~i  315 (536)
                       ....+ .-.+.=..++.++..|+.++...+++.-|.++.....++.   ...+|..+.    -+|...+-.- ...|..
T Consensus       123 -~lg~~-~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~r  200 (262)
T COG3823         123 -ELGRF-SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIAR  200 (262)
T ss_pred             -hhccc-ccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEE
Confidence             11111 2245556777778778887777788888887766555544   333444333    3455544443 566777


Q ss_pred             EeCCCCcEEEEEc-----------cccccceEEEEEeCCCC-EEEEE
Q 009373          316 WDTNSGCLLTVVN-----------GAHVGNTKSLARSHTGD-FLFTG  350 (536)
Q Consensus       316 ~d~~~~~~~~~~~-----------~~~~~~i~~l~~~~~~~-~l~tg  350 (536)
                      .|..+|+.+..+.           ..+..-.+.+++.|++. +++||
T Consensus       201 I~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         201 IDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            7777777665542           13455678899999885 45554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.58  E-value=0.036  Score=35.11  Aligned_cols=31  Identities=23%  Similarity=0.406  Sum_probs=28.5

Q ss_pred             cccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          331 HVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       331 ~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                      ....|.+++|+|..++||.|+.+|.|.+|.+
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            4457899999999999999999999999998

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.54  E-value=1.9  Score=44.69  Aligned_cols=69  Identities=14%  Similarity=0.081  Sum_probs=40.0

Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEE
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSL  404 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~v  404 (536)
                      ...+..+.|.+++.++ ++..++...+|.+.-.....   ....-.....++.+|+-++..++....+|.+.+
T Consensus       496 ~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~---~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l  564 (591)
T PRK13616        496 GDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNS---DALPSRNLSAPVVAVAASPSTVYVTDARAVLQL  564 (591)
T ss_pred             CCccccceEecCCEEE-EEecCCCCceEEEecCCccc---cccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence            3345788999988854 55555555566654432111   110111135677888877777777777774443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=95.38  E-value=0.88  Score=44.95  Aligned_cols=185  Identities=15%  Similarity=0.045  Sum_probs=101.7

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEe---CC-CcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEE-EeCCCcEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSG---YD-SIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVA-GGTDGFIHC  224 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs---~d-g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~s-g~~dg~i~v  224 (536)
                      .+.+..-...+..-+|+|++..++-.+   .. ..+.++++.+++...... ......-.++|||+.|+. ...||...+
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            445555556677778999887655432   22 458999999886554443 222344578899886654 455666544


Q ss_pred             E--EcccCccceecccCcccccceEEeeCCccC--EEEEEEeCCEEEEEe-cCCe--EEEEeCCCceEeEee-e-ccccE
Q 009373          225 W--RAVEVLPHLFDISGSEKQNTQFRLWEHEGP--ITSLALDLTRIYSGS-WDMT--VRVWDRALLKCLKVL-R-HSDWV  295 (536)
Q Consensus       225 w--d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~~~l~s~s-~dg~--i~iwd~~~~~~~~~~-~-~~~~v  295 (536)
                      |  |+.++.              ...+..-.+.  -.++.-+|+.++..+ ..|.  |.+.|.+........ . .....
T Consensus       265 y~~dl~~~~--------------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~  330 (425)
T COG0823         265 YLMDLDGKN--------------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSN  330 (425)
T ss_pred             EEEcCCCCc--------------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcC
Confidence            4  554432              1112111111  112222777766554 4443  566676655542222 1 22224


Q ss_pred             EEEeecCCEEEEec--CCc--EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373          296 YGLAPHDTTVASTS--GSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       296 ~~~~~~~~~l~~~~--d~~--i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                      -.++|+|+.++..+  +|.  |.+.|+.++...+.+.  .......-.+.|+|..+...+
T Consensus       331 p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s  388 (425)
T COG0823         331 PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSS  388 (425)
T ss_pred             ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEec
Confidence            45569999988877  455  7777777666444432  333333445666666555433

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.28  E-value=4.3  Score=43.15  Aligned_cols=134  Identities=15%  Similarity=0.108  Sum_probs=91.6

Q ss_pred             CCeEEEEeCCCceEeE---eeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373          272 DMTVRVWDRALLKCLK---VLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      .|.|.++.+...+.+.   ...-.+.+.++..-+..++++-+..|++|+..+++.++.- ..+..++..+...-.|+.++
T Consensus       806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~  884 (1096)
T KOG1897|consen  806 NGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIE-CNISNPIIALDLQVKGDEIA  884 (1096)
T ss_pred             cceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehhh-hcccCCeEEEEEEecCcEEE
Confidence            4677777766533332   2336677888874444555666889999999998766654 35888899999999999999


Q ss_pred             EEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE-cCCeEEEEeCCCcEEEEECCc
Q 009373          349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~  409 (536)
                      +|.-=+++.+-..+..+  ..+..+. -.-+...++++.+ +.+.++.+..+|.+.+-...+
T Consensus       885 VgDlm~Sitll~y~~~e--g~f~evA-rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  885 VGDLMRSITLLQYKGDE--GNFEEVA-RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             EeeccceEEEEEEeccC--CceEEee-hhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence            99988888877766552  1111221 1235566777776 557777777888888876654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.17  E-value=2  Score=41.61  Aligned_cols=231  Identities=11%  Similarity=0.059  Sum_probs=100.2

Q ss_pred             CCEEEEEe-cCCeEEEEeCC----CceEeEeeec-----cccEE---EE-e-ecCCEEEEec---C----CcEEEEeCCC
Q 009373          263 LTRIYSGS-WDMTVRVWDRA----LLKCLKVLRH-----SDWVY---GL-A-PHDTTVASTS---G----SDVYIWDTNS  320 (536)
Q Consensus       263 ~~~l~s~s-~dg~i~iwd~~----~~~~~~~~~~-----~~~v~---~~-~-~~~~~l~~~~---d----~~i~i~d~~~  320 (536)
                      .++|+..+ ..+.|.|.|+.    ..+..++++.     ...+.   .+ + |+|++++++-   +    |.+.++|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            45666665 77899999987    4455555541     11111   12 2 7787777753   2    4599999998


Q ss_pred             CcEEEEEcccc--ccceEEEEEeCCCCEEEEEcC--------------------CCcEEEEEcccCccccccceeeeccC
Q 009373          321 GCLLTVVNGAH--VGNTKSLARSHTGDFLFTGGE--------------------DGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       321 ~~~~~~~~~~~--~~~i~~l~~~~~~~~l~tg~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      .+.........  ..--+.+-+.|..+.+++...                    ..++.+||+...      +.++++.-
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r------~~~Q~idL  240 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR------KLLQTIDL  240 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT------EEEEEEES
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC------cEeeEEec
Confidence            88877765422  234566778888888887642                    346999999998      45555443


Q ss_pred             C--CCCeEEEEE--cC--Ce-EEEEeCCCcEEEEEC-CcccccCCCCCCCceeeEEeeCCC----------eeeeccccc
Q 009373          379 H--TGPVNSLAF--EF--PW-LVSAAGDGKLSLIDV-RKLLRSGRPTSGKRVSRVIEVEPP----------QRMLHGFEC  440 (536)
Q Consensus       379 h--~~~v~~l~~--~~--~~-l~s~s~dg~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~  440 (536)
                      -  ...+..|.|  +|  .+ ++.+.-.++|..|-- ..+.  +      .+..+.++...          .+.+.....
T Consensus       241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~--W------~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~  312 (461)
T PF05694_consen  241 GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE--W------AAEKVIDIPAKKVEGWILPEMLKPFGAVPP  312 (461)
T ss_dssp             -TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE--E------EEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred             CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC--e------eeeEEEECCCcccCcccccccccccccCCC
Confidence            2  234667777  34  22 333334445554433 2211  0      01111111111          011111123


Q ss_pred             cEEE--EEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhh-h--------cccchhHHHhhhhccccccCCCCccee
Q 009373          441 NLLS--VDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARAL-R--------GIRLENRMRRRKLQTEMSSKGGRTDQC  507 (536)
Q Consensus       441 ~v~~--~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~  507 (536)
                      -++.  ++.+++ +.++.=.+|.||.||++.....+...... .        ......+....++-+..|.||+++-.+
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            3445  445555 45666679999999999755433221100 0        111122334445678899999999875

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.82  E-value=3  Score=37.77  Aligned_cols=160  Identities=13%  Similarity=0.056  Sum_probs=88.0

Q ss_pred             EeeCCccCEEEEEEeC--C-EEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCEEEEec-CCcEEEEeCC
Q 009373          248 RLWEHEGPITSLALDL--T-RIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTN  319 (536)
Q Consensus       248 ~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~  319 (536)
                      .+.+-...+..++|++  + .+++....+.|..++. +|+.+..+.  ..+..-.+.  .++.++++.. ++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4556666799999943  4 5566677788888886 578887776  223445555  4444555444 7888888883


Q ss_pred             CCc------EEEEEc----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc-----eeeeccCCCCCeE
Q 009373          320 SGC------LLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL-----LVATWIPHTGPVN  384 (536)
Q Consensus       320 ~~~------~~~~~~----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~h~~~v~  384 (536)
                      ...      ....+.    ..+...+-.++|+|.++.|+++-+..-..+|.+..........     ...........+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            321      112221    1244568999999998888888887778888887511000000     0111223445678


Q ss_pred             EEEEcC---CeEEEEeCCCcEEEEECC
Q 009373          385 SLAFEF---PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       385 ~l~~~~---~~l~s~s~dg~i~vwd~~  408 (536)
                      +++++|   .+++.......|..+|..
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d~~  201 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELDRQ  201 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEECCC
Confidence            899987   366666667788888844

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.80  E-value=3  Score=37.71  Aligned_cols=225  Identities=11%  Similarity=0.049  Sum_probs=120.8

Q ss_pred             EEEEecCCC-EEEEEeCCCc-EEEEECCCCceeeeeCCCCceE----EEEecCCCEEEEEeCC-----CcEEEEEcccCc
Q 009373          163 TVFVLASAK-LLFTSGYDSI-VRMWHLEDGFSIASSKPLGCTI----RAVAADKKLLVAGGTD-----GFIHCWRAVEVL  231 (536)
Q Consensus       163 ~v~~~~~~~-~l~sgs~dg~-v~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~  231 (536)
                      .|+|+|... -++.+=.-|+ ..++|..+.+...++......-    -.+++||.+|+..-.|     |.|-|||.+.+.
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            566777543 4555555554 5689998887666553332221    2578999999886544     789999987653


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec------------------CCeEEEEeCCCceEeEeee-
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------------------DMTVRVWDRALLKCLKVLR-  290 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------------------dg~i~iwd~~~~~~~~~~~-  290 (536)
                                  ..+-.+..|.-.-..+.+  ||..++.+..                  .-.+.+.|..++..+.+.. 
T Consensus       152 ------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L  219 (366)
T COG3490         152 ------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL  219 (366)
T ss_pred             ------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence                        234445555555555555  7776665432                  1123333444444443332 


Q ss_pred             ----ccccEEEEe--ecCCEEEEec-CCc-----EEEEeCCCCcEEEEEcc------ccccceEEEEEeCCCCEEEEEcC
Q 009373          291 ----HSDWVYGLA--PHDTTVASTS-GSD-----VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGE  352 (536)
Q Consensus       291 ----~~~~v~~~~--~~~~~l~~~~-d~~-----i~i~d~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l~tg~~  352 (536)
                          +.-.+.-++  .++..++.+. .|.     -.+=-...++.+..+.-      .....|-+++.+.+..+++..+-
T Consensus       220 p~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP  299 (366)
T COG3490         220 PASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP  299 (366)
T ss_pred             chhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC
Confidence                222333333  5555555543 111     11111122333333321      12234667777766666665555


Q ss_pred             C-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEEC
Q 009373          353 D-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       353 d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~  407 (536)
                      . +...+||..++.      .+..-  .-.....++-...-++..+.+|.+.++.-
T Consensus       300 ~GN~~vi~da~tG~------vv~~a--~l~daaGva~~~~gf~vssg~G~~~~~s~  347 (366)
T COG3490         300 RGNRAVIWDAATGA------VVSEA--ALPDAAGVAAAKGGFAVSSGQGRIIFYSR  347 (366)
T ss_pred             CCCeEEEEEcCCCc------EEecc--cccccccceeccCceEEecCCceEEeccc
Confidence            4 457889999983      22211  11122334444566677778888888743

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=94.75  E-value=4.6  Score=39.57  Aligned_cols=85  Identities=15%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             EEEEecCCCEEEEEeCCCcEEE---EECC-----CCceeeee----CCC-CceEEEEe-------------cCCCEEEEE
Q 009373          163 TVFVLASAKLLFTSGYDSIVRM---WHLE-----DGFSIASS----KPL-GCTIRAVA-------------ADKKLLVAG  216 (536)
Q Consensus       163 ~v~~~~~~~~l~sgs~dg~v~i---wd~~-----~~~~~~~~----~~~-~~~v~~~~-------------~~~~~l~sg  216 (536)
                      .++.+|++++||.|..+..+.+   |+..     .+......    ... ...|+++.             +|...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4577899999999988777665   6431     11111111    111 13444332             345689999


Q ss_pred             eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE
Q 009373          217 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL  261 (536)
Q Consensus       217 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  261 (536)
                      ..+|.|++|.-..              ..+..-.-|..+|..+..
T Consensus        86 ~ssG~vrfyte~G--------------~LL~~Q~~h~~pV~~ik~  116 (415)
T PF14655_consen   86 TSSGYVRFYTENG--------------VLLLSQLLHEEPVLKIKC  116 (415)
T ss_pred             ecccEEEEEeccc--------------hHHHHHhcCccceEEEEe
Confidence            9999999998522              133333457888888887

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.65  E-value=0.83  Score=44.74  Aligned_cols=135  Identities=16%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             EEEEecCCeEEEEeCCCceEeEeeeccccE--EEEeec--------CCEEEEecCCcEEEEeCCCCcE-EEEEcccc---
Q 009373          266 IYSGSWDMTVRVWDRALLKCLKVLRHSDWV--YGLAPH--------DTTVASTSGSDVYIWDTNSGCL-LTVVNGAH---  331 (536)
Q Consensus       266 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~~--------~~~l~~~~d~~i~i~d~~~~~~-~~~~~~~~---  331 (536)
                      |.++.....++-.|++.|+.+........|  ..+.|+        ...|+.-++..|.-||++-... ......+|   
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            455666677888899999999888733333  333333        3456777789999999985322 11111122   


Q ss_pred             -ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373          332 -VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       332 -~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~  408 (536)
                       .....|.+-..+ .++++||.+|.|++||- .+.     ..-..+.+-..+|..+..+  +.+|++. .+..+.+.++.
T Consensus       429 ~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~-----~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  429 TKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGR-----RAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             cccccceeeecCC-ceEEEeecCCcEEeehh-hhh-----hhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEe
Confidence             223455554444 47999999999999996 331     2233456677888888774  5555544 45677777764

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.45  E-value=5.1  Score=38.81  Aligned_cols=64  Identities=11%  Similarity=0.067  Sum_probs=42.9

Q ss_pred             ecCCCEEEEE---------eCCCcEEEEECCCCceeeeeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEcccCc
Q 009373          167 LASAKLLFTS---------GYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       167 ~~~~~~l~sg---------s~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      |||+++++..         +..+...|+|+++++....... ....-..++|+|+.++... ++.|.+++..++.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence            5677766653         2346789999999765544333 3455667889999888775 5789999876663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=7.2  Score=40.33  Aligned_cols=51  Identities=14%  Similarity=0.252  Sum_probs=36.1

Q ss_pred             CCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccC
Q 009373          179 DSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       179 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      --.|+||+.. |+.+.++.-..+.+..+. .+...|+.-..+|++++|++-..
T Consensus        63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge  114 (829)
T KOG2280|consen   63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE  114 (829)
T ss_pred             ceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence            3568888864 666655544344677777 45667888999999999998543

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=94.05  E-value=0.062  Score=41.63  Aligned_cols=68  Identities=22%  Similarity=0.410  Sum_probs=51.4

Q ss_pred             ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhh
Q 009373           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVE  137 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~  137 (536)
                      +..+|.+++.-||..+.|..|..+..-|....  ..++.||+.++.+.|+.....    ....+...|+.+|..
T Consensus         4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l~--~~tdeLW~~~i~rdFp~~~~~----~~~~~~~~Wr~~Y~~   71 (109)
T PF06881_consen    4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHLI--EDTDELWKKLIKRDFPEESKR----QKPKEPESWRELYEK   71 (109)
T ss_pred             cCCCCHHHHHHHHccCCHHHHHHHHHhCCCcc--hhhHHHHHHHHHhHCcChhhc----ccccccchHHHHHHH
Confidence            77899999999999999999999998884332  357899999988899641111    122334589999865

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.50  E-value=2.7  Score=36.86  Aligned_cols=48  Identities=10%  Similarity=0.122  Sum_probs=40.0

Q ss_pred             EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373          337 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       337 ~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                      .+++..+|.+.++.-..|+|...|+.++      +.+.++.-....|+|++|-+
T Consensus       216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tG------K~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  216 GMTIDTEGNLYVATFNGGTVQKVDPTTG------KILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cceEccCCcEEEEEecCcEEEEECCCCC------cEEEEEEcCCCceEEEEecC
Confidence            3445668898888888999999999999      67777777799999999975

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.23  E-value=8.8  Score=37.40  Aligned_cols=95  Identities=15%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             cCCeEEEEeCCCceEeEeeecc---ccEEEEe----ecCCEEEEec--CCcEEEEeC-CCCc----EEEEEccc------
Q 009373          271 WDMTVRVWDRALLKCLKVLRHS---DWVYGLA----PHDTTVASTS--GSDVYIWDT-NSGC----LLTVVNGA------  330 (536)
Q Consensus       271 ~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~----~~~~~l~~~~--d~~i~i~d~-~~~~----~~~~~~~~------  330 (536)
                      ...++.+||+.+.+.++++...   .-...+.    |+..+-+++.  .++|..|-- ..++    .+..+...      
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            3478999999999999999832   2223333    4444444333  666655543 4443    22222110      


Q ss_pred             ----------cccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCc
Q 009373          331 ----------HVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDC  365 (536)
Q Consensus       331 ----------~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~  365 (536)
                                -..-|+.+.+|.|.++|..+. .+|.|+.||+.+..
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence                      024578999999999876654 58999999998874

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=93.09  E-value=8.7  Score=36.94  Aligned_cols=187  Identities=14%  Similarity=0.098  Sum_probs=81.6

Q ss_pred             EEecCCCEEEE-EeCCCc--EEEEECCCCceeeeeCCCC--ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccC
Q 009373          165 FVLASAKLLFT-SGYDSI--VRMWHLEDGFSIASSKPLG--CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       165 ~~~~~~~~l~s-gs~dg~--v~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      +|.++|+.|+- +..||.  +.+-|+.+++..+-..+..  ..-..++++.+.++-...+..|.-.|+.+.+.       
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-------  114 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-------  114 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-------
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-------
Confidence            46778865554 444554  6666788876655443221  11245567777776555556788888877642       


Q ss_pred             cccccceEEeeCCccCEEEEEE----eCCEEEE----------------------EecCCeEEEEeCCCceEeEeeeccc
Q 009373          240 SEKQNTQFRLWEHEGPITSLAL----DLTRIYS----------------------GSWDMTVRVWDRALLKCLKVLRHSD  293 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s----------------------~s~dg~i~iwd~~~~~~~~~~~~~~  293 (536)
                          ..+..+  ....+-...|    ++..++-                      +-....|.--|+.+++....+....
T Consensus       115 ----~~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~  188 (386)
T PF14583_consen  115 ----RVVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD  188 (386)
T ss_dssp             ----EEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS
T ss_pred             ----EEEEEC--CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc
Confidence                111111  2222222222    2222211                      1112355666788888777777667


Q ss_pred             cEEEEe---ecCCEEEEecCC-----cEEEEeCCC-CcEEEEEcccc-ccceEEEEEeCCCCEEEEE-----cCCCcEEE
Q 009373          294 WVYGLA---PHDTTVASTSGS-----DVYIWDTNS-GCLLTVVNGAH-VGNTKSLARSHTGDFLFTG-----GEDGAIHM  358 (536)
Q Consensus       294 ~v~~~~---~~~~~l~~~~d~-----~i~i~d~~~-~~~~~~~~~~~-~~~i~~l~~~~~~~~l~tg-----~~dg~i~i  358 (536)
                      ++.-+.   .++.+++-|..|     .-+||-+++ +.....+.... ...+.-=-|.|+|..|.--     +.+..|.-
T Consensus       189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~  268 (386)
T PF14583_consen  189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG  268 (386)
T ss_dssp             -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred             cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence            766665   455566666532     236665543 33333332111 1223333478888765432     22445666


Q ss_pred             EEcccC
Q 009373          359 YEIIND  364 (536)
Q Consensus       359 wd~~~~  364 (536)
                      +|+.++
T Consensus       269 ~d~~t~  274 (386)
T PF14583_consen  269 YDPDTG  274 (386)
T ss_dssp             E-TTT-
T ss_pred             eCCCCC
Confidence            777665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.92  E-value=9.5  Score=36.93  Aligned_cols=212  Identities=15%  Similarity=0.065  Sum_probs=107.6

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CC------------------CCceEEEEecCCCEEEEEeC
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KP------------------LGCTIRAVAADKKLLVAGGT  218 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~------------------~~~~v~~~~~~~~~l~sg~~  218 (536)
                      ...+....|+|+|+.++-.. ++.|.+++..++...+-. .+                  .....+-++||++.|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            66788899999999988876 678999998877544322 11                  11234567788888887655


Q ss_pred             C-CcEEEEEcccCccceecccCcccccceEEeeCCc---cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-e-
Q 009373          219 D-GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE---GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-  290 (536)
Q Consensus       219 d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-  290 (536)
                      | ..|..+.+..                   .....   ..+..+.+  -|..-..    -.+.++|+.+++....- . 
T Consensus       121 d~~~v~~~~~~~-------------------~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~  177 (353)
T PF00930_consen  121 DEREVPEYPLPD-------------------YSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPN  177 (353)
T ss_dssp             E-TTS-EEEEEE-------------------ESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---H
T ss_pred             CCcCCceEEeec-------------------cCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeecc
Confidence            4 3444443311                   11111   12334443  1211111    14566788777653211 1 


Q ss_pred             ----ccccEEEEe--ecCC-EEEEec--C---CcEEEEeCCCCcEEEEEccccccc---eEEEEEe-CCCC-EEEEEcCC
Q 009373          291 ----HSDWVYGLA--PHDT-TVASTS--G---SDVYIWDTNSGCLLTVVNGAHVGN---TKSLARS-HTGD-FLFTGGED  353 (536)
Q Consensus       291 ----~~~~v~~~~--~~~~-~l~~~~--d---~~i~i~d~~~~~~~~~~~~~~~~~---i~~l~~~-~~~~-~l~tg~~d  353 (536)
                          ....+..+.  +++. +++.-.  +   ..+.++|..+++..........+.   .....+. +++. ++.....|
T Consensus       178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence                233444554  6666 343333  2   237778888776544333222222   2244554 5554 55566678


Q ss_pred             CcEEEEEcccCccccccceeeeccCCCCCeEE-EEEcC--C-eEEEEeC
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEF--P-WLVSAAG  398 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~-~l~s~s~  398 (536)
                      |.-+||-+....     .....+....-.|+. +.+++  + ..+++..
T Consensus       258 G~~hly~~~~~~-----~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~  301 (353)
T PF00930_consen  258 GYRHLYLYDLDG-----GKPRQLTSGDWEVTSILGWDEDNNRIYFTANG  301 (353)
T ss_dssp             SSEEEEEEETTS-----SEEEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred             CCcEEEEEcccc-----cceeccccCceeecccceEcCCCCEEEEEecC
Confidence            876666555442     123345555666755 44554  3 3445554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.76  E-value=1.3  Score=39.38  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=29.5

Q ss_pred             cCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373          254 GPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       254 ~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      .++..+..+++++++.+.+|.+++||+.+++.+..
T Consensus        13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~   47 (219)
T PF07569_consen   13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLP   47 (219)
T ss_pred             CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccC
Confidence            45666777999999999999999999999877544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.66  E-value=6.2  Score=40.77  Aligned_cols=104  Identities=20%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe--CCCCEEEEEcCCCcEEEEEcc-----cCccccccce
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS--HTGDFLFTGGEDGAIHMYEII-----NDCTEANVLL  372 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~l~tg~~dg~i~iwd~~-----~~~~~~~~~~  372 (536)
                      -++..++.+ ...+.|||.+.+.......-...+.|..+.|.  |+|+.+++.+..+.|.+|.-.     ...  +...+
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~--p~w~~  117 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG--PSWAP  117 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC--cccce
Confidence            344444444 56799999999875544332357789999885  678888888888999988542     111  11222


Q ss_pred             eee--ccCCC-CCeEEEEEcC-CeEEEEeCCCcEEEEEC
Q 009373          373 VAT--WIPHT-GPVNSLAFEF-PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       373 ~~~--~~~h~-~~v~~l~~~~-~~l~s~s~dg~i~vwd~  407 (536)
                      +..  +..|+ .+|.+..|-+ ..+++|+ ++.+.|+|-
T Consensus       118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  118 IRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             eEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence            222  23444 5788899965 5666555 446888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.64  E-value=0.6  Score=28.71  Aligned_cols=32  Identities=16%  Similarity=0.021  Sum_probs=26.6

Q ss_pred             ccEEEEEEecCC---CEEEEEeCCCcEEEEECCCC
Q 009373          159 EAVLTVFVLASA---KLLFTSGYDSIVRMWHLEDG  190 (536)
Q Consensus       159 ~~V~~v~~~~~~---~~l~sgs~dg~v~iwd~~~~  190 (536)
                      ++|.+|.|+|++   .+|+.+-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            478999999854   48888888899999999853

It contains a characteristic DLL sequence motif.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.61  E-value=11  Score=37.01  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=78.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCce----eeeeCCCCceEEEEec-------CCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFS----IASSKPLGCTIRAVAA-------DKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~----~~~~~~~~~~v~~~~~-------~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      ...+++||..|.++||+...+..    +.--..-..+|+.+..       +...|++ =.-..+.+|.+......   ..
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~---~~  112 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT---VE  112 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC---cc
Confidence            45899999999999999854431    1111223456666651       1223333 45566777776322100   00


Q ss_pred             CcccccceEEeeCCcc--CEEEEE---E---e-CCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEeecCCEEE
Q 009373          239 GSEKQNTQFRLWEHEG--PITSLA---L---D-LTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVA  306 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~--~v~~l~---~---~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~  306 (536)
                      . ...........|.-  ....++   |   . .+.++.-+.||.+.+|+-+.......+.   .++++.-+...+.++.
T Consensus       113 ~-g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt  191 (418)
T PF14727_consen  113 H-GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVT  191 (418)
T ss_pred             c-CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEE
Confidence            0 00112222223322  222222   3   2 3678999999999999977655444444   5555544444444555


Q ss_pred             EecCCcEEEEeC
Q 009373          307 STSGSDVYIWDT  318 (536)
Q Consensus       307 ~~~d~~i~i~d~  318 (536)
                      +.++..+..|..
T Consensus       192 ~sss~~l~~Yky  203 (418)
T PF14727_consen  192 ASSSWTLECYKY  203 (418)
T ss_pred             ecCceeEEEecH
Confidence            555677777754

>PF13013 F-box-like_2: F-box-like domain

Probab=92.28  E-value=0.18  Score=38.58  Aligned_cols=33  Identities=24%  Similarity=0.212  Sum_probs=29.1

Q ss_pred             ccccCCcHHHHHHHhcCCChhhHHHHhhhhHHH
Q 009373           62 STITDLPPALISEILNCLDPKELGIVSCVSPIL   94 (536)
Q Consensus        62 ~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~   94 (536)
                      -.+.+||.||+..||.|.+..++..++.+|+..
T Consensus        20 ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~   52 (109)
T PF13013_consen   20 LTLLDLPWELLQLIFDYCNDPILLALSRTCRAY   52 (109)
T ss_pred             cchhhChHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence            347889999999999999999999999998833

>PRK13616 lipoprotein LpqB; Provisional

Probab=92.27  E-value=13  Score=38.75  Aligned_cols=74  Identities=16%  Similarity=0.020  Sum_probs=43.8

Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCcEEEEEc---ccCccccccceeeeccC-CCCCeEEEEEcC-CeEEEEeCCCcEEEEE
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEI---INDCTEANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLID  406 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~---~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd  406 (536)
                      .+.|..+.|+|||..++... +|.|.+=-+   ..+.  ..+.....+.. -...+.++.|.+ ..|+.+..++...+|.
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~  523 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWY  523 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEE
Confidence            45799999999999887765 577777332   2221  11111122222 233468899964 4566666666556666


Q ss_pred             CC
Q 009373          407 VR  408 (536)
Q Consensus       407 ~~  408 (536)
                      +.
T Consensus       524 v~  525 (591)
T PRK13616        524 VN  525 (591)
T ss_pred             Ee
Confidence            54

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.12  E-value=5.1  Score=31.92  Aligned_cols=97  Identities=8%  Similarity=0.079  Sum_probs=66.2

Q ss_pred             EEEEEecCCeEEEEeCCC--------ceEeEeeeccccEEEEe-------ecCCEEEEecCCcEEEEeCCCCcEEEEEcc
Q 009373          265 RIYSGSWDMTVRVWDRAL--------LKCLKVLRHSDWVYGLA-------PHDTTVASTSGSDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       265 ~l~s~s~dg~i~iwd~~~--------~~~~~~~~~~~~v~~~~-------~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~  329 (536)
                      .|+.++.-|.|.|++...        ...+..+.....|++++       .....|+.|+...+..||+.....+..-  
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyk--   89 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYK--   89 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhh--
Confidence            577788889999998763        33556677778888886       2356899999999999999887665433  


Q ss_pred             ccccceEEEEEeC----CCCEEEEEcCCCcEEEEEcccC
Q 009373          330 AHVGNTKSLARSH----TGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       330 ~~~~~i~~l~~~~----~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .-...++++.+-.    ...++++| .+..|.-||....
T Consensus        90 e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~  127 (136)
T PF14781_consen   90 EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN  127 (136)
T ss_pred             hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence            2446677777633    23444444 4556666665443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.12  E-value=9.3  Score=34.94  Aligned_cols=156  Identities=14%  Similarity=0.149  Sum_probs=95.5

Q ss_pred             CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccc--cEEEEe--ecCCEEEEec-CCcEEEEeCCCCcE
Q 009373          251 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL  323 (536)
Q Consensus       251 ~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~  323 (536)
                      +-...|.++.|  +.+.|++......-.++=...|+.+.++...+  ..-++.  -++.++++-. +..+.++.+.....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence            44556999999  45678888877777787777888888876211  112233  3344444444 67777776655422


Q ss_pred             EEEE-----c---ccc-ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCC-------CCCeEEEE
Q 009373          324 LTVV-----N---GAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH-------TGPVNSLA  387 (536)
Q Consensus       324 ~~~~-----~---~~~-~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h-------~~~v~~l~  387 (536)
                      +...     .   ..+ ....-.++|+|....|+.+-+-.-+.||.+......   ..+.....+       -..|.++.
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccce
Confidence            2111     1   112 556789999999999999988888888887754211   111111122       23466777


Q ss_pred             EcC---CeEEEEeCCCcEEEEECCc
Q 009373          388 FEF---PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       388 ~~~---~~l~s~s~dg~i~vwd~~~  409 (536)
                      |++   ..|+-+..++.+.-.|...
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCC
Confidence            874   4666666677777676653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=91.99  E-value=4  Score=40.43  Aligned_cols=128  Identities=16%  Similarity=0.195  Sum_probs=73.9

Q ss_pred             CeEEEEeCCCceEeEeee--ccccEEEEeecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCE
Q 009373          273 MTVRVWDRALLKCLKVLR--HSDWVYGLAPHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF  346 (536)
Q Consensus       273 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  346 (536)
                      ..+.++|+.+++......  .....-.++|+|+.++.+.  ++  .|.++|+..+...+ +.. ..+.-..=.|+|+|+.
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~-~~gi~~~Ps~spdG~~  295 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTN-GFGINTSPSWSPDGSK  295 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-ccc-CCccccCccCCCCCCE
Confidence            468899999887766655  4445556779999888776  44  48888998877443 432 2222235568999997


Q ss_pred             EEEEc-CCCc--EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC-CCc--EEEEECCc
Q 009373          347 LFTGG-EDGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGK--LSLIDVRK  409 (536)
Q Consensus       347 l~tg~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~--i~vwd~~~  409 (536)
                      ++-.+ ..|.  |.+++.....     ....+..+-...  .-.++|  ++++..+. +|.  |.+.|+.+
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~-----~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQ-----VTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCc-----eeEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence            76554 4565  4444444442     112222222222  333444  56665554 344  55555544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=91.96  E-value=0.59  Score=28.72  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=26.3

Q ss_pred             cceEEEEEeCCC---CEEEEEcCCCcEEEEEcccC
Q 009373          333 GNTKSLARSHTG---DFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       333 ~~i~~l~~~~~~---~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +.+.++.|+|.+   ++|+.+-.-|.|.|+|+++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468899999854   48888888899999999964

It contains a characteristic DLL sequence motif.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=91.94  E-value=13  Score=36.31  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=10.7

Q ss_pred             EEEecCCEEEEecCC
Q 009373          444 SVDIGADRIVCGGEE  458 (536)
Q Consensus       444 ~~~~~~~~l~sg~~D  458 (536)
                      ++..++..++.||..
T Consensus       339 av~~~~~iyv~GG~~  353 (376)
T PRK14131        339 SVSWNNGVLLIGGET  353 (376)
T ss_pred             EEEeCCEEEEEcCCC
Confidence            556677788888764

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.89  E-value=20  Score=38.22  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=27.8

Q ss_pred             cccceEEEEEeCC---CCEEEEEcCCCcEEEEEcccCc
Q 009373          331 HVGNTKSLARSHT---GDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       331 ~~~~i~~l~~~~~---~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      +...|..+.|+|.   +..|++=..|+++|+||+....
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            4557888899986   4688888889999999997653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.68  E-value=13  Score=38.95  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=65.3

Q ss_pred             CEEEEEE----eCCEEEEEecCCeEEEEeCCC-------c-------------eEeEeeeccccEEEEee----cCCEEE
Q 009373          255 PITSLAL----DLTRIYSGSWDMTVRVWDRAL-------L-------------KCLKVLRHSDWVYGLAP----HDTTVA  306 (536)
Q Consensus       255 ~v~~l~~----~~~~l~s~s~dg~i~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~----~~~~l~  306 (536)
                      .|+-|..    +.+.|+.|.+||.|.+|.+++       .             ++...+.....+.+++.    ..+++|
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA  181 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA  181 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence            3555544    557899999999999996421       0             01122234455666663    366777


Q ss_pred             EecC-CcEEEEeCCC--CcEEEEEccccccceEEEEEeCCC---C---EEEEEcCCCcEEEEEc
Q 009373          307 STSG-SDVYIWDTNS--GCLLTVVNGAHVGNTKSLARSHTG---D---FLFTGGEDGAIHMYEI  361 (536)
Q Consensus       307 ~~~d-~~i~i~d~~~--~~~~~~~~~~~~~~i~~l~~~~~~---~---~l~tg~~dg~i~iwd~  361 (536)
                      ++++ ..|.||-...  .+....-...+...|-+|+|-++.   .   .|++++-.|.+-+|++
T Consensus       182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7774 5566654332  221111111356678899987743   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.67  E-value=12  Score=35.58  Aligned_cols=106  Identities=12%  Similarity=-0.025  Sum_probs=52.9

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCce---eeeeCCCC---ceEEEEecCCCEEEEEeCC-----CcEEEEEcccCcc
Q 009373          169 SAKLLFTSGYD-----SIVRMWHLEDGFS---IASSKPLG---CTIRAVAADKKLLVAGGTD-----GFIHCWRAVEVLP  232 (536)
Q Consensus       169 ~~~~l~sgs~d-----g~v~iwd~~~~~~---~~~~~~~~---~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~  232 (536)
                      ++.+++.|+.+     ..+..+|+.+.+-   ...+..-.   ....+...++.+.+.|+..     ..+..||+.+..-
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            46677777764     3466677766542   12222111   1112223567777777642     3577777765431


Q ss_pred             ceecccCcccccceEEeeC-CccCEEEEEEeCCEEEEEecCC----eEEEEeCCCceE
Q 009373          233 HLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWDM----TVRVWDRALLKC  285 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg----~i~iwd~~~~~~  285 (536)
                      .           ....+.. ....-..+..++...+.|+.++    .+..||..+.+-
T Consensus       152 ~-----------~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       152 F-----------ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             e-----------ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            1           1111111 0111122344667777777654    356788876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.25  E-value=14  Score=35.23  Aligned_cols=93  Identities=10%  Similarity=0.039  Sum_probs=46.0

Q ss_pred             EeCCEEEEEec-----CCeEEEEeCCCceEeEe--eec--cccEEEEeecCCEEEEec-CC----cEEEEeCCCCcEEEE
Q 009373          261 LDLTRIYSGSW-----DMTVRVWDRALLKCLKV--LRH--SDWVYGLAPHDTTVASTS-GS----DVYIWDTNSGCLLTV  326 (536)
Q Consensus       261 ~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~--~~~--~~~v~~~~~~~~~l~~~~-d~----~i~i~d~~~~~~~~~  326 (536)
                      +++...+.|+.     ...+..||+.+.+-...  +..  ......+..++++.+.|+ ++    .+.+||+.+.+-...
T Consensus       122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~  201 (323)
T TIGR03548       122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKV  201 (323)
T ss_pred             ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEEC
Confidence            36666666664     23578888876543221  111  111122335666666665 42    367899888754322


Q ss_pred             Eccc---cccc--eEEEEEeCCCCEEEEEcCC
Q 009373          327 VNGA---HVGN--TKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       327 ~~~~---~~~~--i~~l~~~~~~~~l~tg~~d  353 (536)
                      -...   ....  ..+.....++.+++.|+.+
T Consensus       202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       202 ADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             CCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            1100   0000  0111122356778888876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.05  E-value=23  Score=37.70  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=24.9

Q ss_pred             CccCEEEEEE-----eCCEEEEEecCCeEEEEeCCCc
Q 009373          252 HEGPITSLAL-----DLTRIYSGSWDMTVRVWDRALL  283 (536)
Q Consensus       252 h~~~v~~l~~-----~~~~l~s~s~dg~i~iwd~~~~  283 (536)
                      +...|..+.|     ++..|+.-..|+++++||+...
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence            3456777777     3568889999999999998653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10115 protease 2; Provisional

Probab=91.01  E-value=25  Score=37.62  Aligned_cols=192  Identities=10%  Similarity=-0.055  Sum_probs=97.0

Q ss_pred             ccEEEEEEecCCCEEEEEeC-----CCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCC------CcEEEEEc
Q 009373          159 EAVLTVFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD------GFIHCWRA  227 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~  227 (536)
                      -.+..+.++|++++|+-+..     ...|++-|+.+|..+...-.......++.+|++.|+....+      ..|+.+++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            34667889999998885532     34588999998864433222222346777888766555432      35667777


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEE-EEE-E-eCCEEEEEe---cCCeEEEEeCC--CceEeEeee-ccccEEEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPIT-SLA-L-DLTRIYSGS---WDMTVRVWDRA--LLKCLKVLR-HSDWVYGL  298 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~-~-~~~~l~s~s---~dg~i~iwd~~--~~~~~~~~~-~~~~v~~~  298 (536)
                      .++..           .....+........ ... . ++.+++..+   .++.+.+++..  ++.....+. ..+....+
T Consensus       207 gt~~~-----------~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  275 (686)
T PRK10115        207 GTPAS-----------QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSL  275 (686)
T ss_pred             CCChh-----------HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEE
Confidence            66521           11111222122222 111 2 556554433   34578888843  333222232 22233333


Q ss_pred             e-ecCCEEEEec-C---CcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373          299 A-PHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       299 ~-~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~  362 (536)
                      . ..+.+++... +   ..|...++........+.... ...+..+.+. .+.++++...+|.-+++-+.
T Consensus       276 ~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        276 DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             EeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            3 3334444433 2   234444555222222332222 2367778877 33566666677776665544

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.74  E-value=18  Score=35.62  Aligned_cols=142  Identities=11%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe------CCEEEEEecCCeEEEEeCCC-
Q 009373          210 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD------LTRIYSGSWDMTVRVWDRAL-  282 (536)
Q Consensus       210 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~s~dg~i~iwd~~~-  282 (536)
                      ...|++|+..|.++||+.......         .....--..-..+|..+...      ....++.=.-+.+.+|.+.. 
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~---------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~  107 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQ---------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLV  107 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCC---------CccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEec
Confidence            468999999999999997443211         11122222345677777651      12233334456677776521 


Q ss_pred             -c--------eEeEeeeccc--cEEEEe------ec-CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC
Q 009373          283 -L--------KCLKVLRHSD--WVYGLA------PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT  343 (536)
Q Consensus       283 -~--------~~~~~~~~~~--~v~~~~------~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~  343 (536)
                       +        +....++|.-  ....+.      .. ..++.+-+ ||.+.+|+-+.-.....+.  ..--...+.|.+.
T Consensus       108 ~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~  185 (418)
T PF14727_consen  108 DGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPR  185 (418)
T ss_pred             CCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeec
Confidence             1        1111222222  222222      22 24555555 9999999977654444432  2333445778888


Q ss_pred             CCEEEEEcCCCcEEEEEcc
Q 009373          344 GDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       344 ~~~l~tg~~dg~i~iwd~~  362 (536)
                      .+.|++++.+..+..|...
T Consensus       186 tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  186 TDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CCEEEEecCceeEEEecHH
Confidence            8999999999999999864

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.23  E-value=19  Score=35.09  Aligned_cols=181  Identities=11%  Similarity=0.060  Sum_probs=98.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCC--ceEEE-EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccce
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--CTIRA-VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ  246 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--~~v~~-~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  246 (536)
                      +..++.+..||.|.-.|.+++..+.......  ..+.. .......++.++.+|.++.+|..++..             .
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~-------------~  134 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTL-------------V  134 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcE-------------E
Confidence            3445566888999999999988765433221  11000 001134488899999888888866641             1


Q ss_pred             EEeeCCc-cCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEE-------eecCCEEEEec--CCcEEE
Q 009373          247 FRLWEHE-GPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL-------APHDTTVASTS--GSDVYI  315 (536)
Q Consensus       247 ~~~~~h~-~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~-------~~~~~~l~~~~--d~~i~i  315 (536)
                      ....... -.+..-.. ....++.++.++.+...|..+++.......... ...       ..++..++...  ++.+.-
T Consensus       135 W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~vy~~~~~~~~~~~a  213 (370)
T COG1520         135 WSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAIASGTVYVGSDGYDGILYA  213 (370)
T ss_pred             EEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCceeecceEEEecCCCcceEEE
Confidence            1221122 01111112 344555555789999999999988877663322 111       12333333333  346777


Q ss_pred             EeCCCCcEEEEEccccccceEE---EEEeC-----CCCEEEEEcCCCcEEEEEcccC
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKS---LARSH-----TGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~---l~~~~-----~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +|..+|......+..+...-..   .....     .+.-+..++.+|.+...|..++
T Consensus       214 ~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G  270 (370)
T COG1520         214 LNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG  270 (370)
T ss_pred             EEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC
Confidence            8888887776642111111110   00000     1123456677787888888877

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.07  E-value=21  Score=35.38  Aligned_cols=187  Identities=13%  Similarity=0.176  Sum_probs=95.1

Q ss_pred             EEEecCCCEEEEE-eCCC----cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC----
Q 009373          204 RAVAADKKLLVAG-GTDG----FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD----  272 (536)
Q Consensus       204 ~~~~~~~~~l~sg-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d----  272 (536)
                      .+++|++++++.+ +..|    .+++.|+.++..            ..-.+...  .-..+.|  +++.|+....|    
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------------l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------------LPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------------EEEEEEEE--ESEEEEECTTSSEEEEEECSTTTS
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------------cCCccccc--ccceEEEeCCCCEEEEEEeCcccc
Confidence            4566999987755 3444    499999988731            01111111  1123788  54555544432    


Q ss_pred             -------CeEEEEeCCCceEe--Eeee--cccc-EEEE--eecCCEEEEec----C-CcEEEEeCCCC----cEEEEEcc
Q 009373          273 -------MTVRVWDRALLKCL--KVLR--HSDW-VYGL--APHDTTVASTS----G-SDVYIWDTNSG----CLLTVVNG  329 (536)
Q Consensus       273 -------g~i~iwd~~~~~~~--~~~~--~~~~-v~~~--~~~~~~l~~~~----d-~~i~i~d~~~~----~~~~~~~~  329 (536)
                             ..|+.|.+.+....  ..+.  .... ...+  +.++++++...    + ..+.+.|+..+    .....+..
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence                   24788888765432  3343  2222 3333  37888877544    2 45888899875    22333322


Q ss_pred             ccccceEEEEEeCCCCEEEEEcC---CCcEEEEEcccCccccccceeeeccCCCC--CeEEEEEcCCeEEEEeC-CC--c
Q 009373          330 AHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFEFPWLVSAAG-DG--K  401 (536)
Q Consensus       330 ~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~l~s~s~-dg--~  401 (536)
                      ...+....+... .+.+++....   .+.|.-.++......   .....+..|..  .+..+....++|+.... ++  .
T Consensus       275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~---~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~  350 (414)
T PF02897_consen  275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA---EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSR  350 (414)
T ss_dssp             SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG---GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEE
T ss_pred             CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc---cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccE
Confidence            223333334333 3444443322   355666676665321   11113444544  56677766666555544 43  5


Q ss_pred             EEEEECC
Q 009373          402 LSLIDVR  408 (536)
Q Consensus       402 i~vwd~~  408 (536)
                      |+++++.
T Consensus       351 l~v~~~~  357 (414)
T PF02897_consen  351 LRVYDLD  357 (414)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            7888887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.88  E-value=4.8  Score=39.53  Aligned_cols=135  Identities=11%  Similarity=0.024  Sum_probs=82.6

Q ss_pred             EEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCC-------CEEEEEeCCCcEEEEEcccCccceecccCcccccceE
Q 009373          175 TSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK-------KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQF  247 (536)
Q Consensus       175 sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  247 (536)
                      .|+....+.--|++-|+.+.....|...++.+.|..       ..-++|-.+..|.-.|.+-..-          .....
T Consensus       485 dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN----------Ki~v~  554 (776)
T COG5167         485 DGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN----------KIKVV  554 (776)
T ss_pred             cCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCC----------ceeee
Confidence            455556677778888998888888877777776532       2334455555555555432110          00000


Q ss_pred             Eee--CCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEecCCcEEEEeCC
Q 009373          248 RLW--EHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTN  319 (536)
Q Consensus       248 ~~~--~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~  319 (536)
                      ...  .......|..- ...+++.||..|-|++||.-..+....+. ....|..+.  .+|.++++.+...+.+-|++
T Consensus       555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~  632 (776)
T COG5167         555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP  632 (776)
T ss_pred             eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence            000  01112223222 67899999999999999965433333333 455565554  88999999998888888875

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.79  E-value=21  Score=37.59  Aligned_cols=109  Identities=9%  Similarity=0.048  Sum_probs=64.5

Q ss_pred             CCCEEEEEcCCCcEEEEEcccCcc--------------ccccceeeeccCCCCCeEEEEEc--C--CeEEEEeCCCcEEE
Q 009373          343 TGDFLFTGGEDGAIHMYEIINDCT--------------EANVLLVATWIPHTGPVNSLAFE--F--PWLVSAAGDGKLSL  404 (536)
Q Consensus       343 ~~~~l~tg~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~v  404 (536)
                      ....|+.+.+||.|.+|.+..-..              ...+.+...+. -...+++++++  .  ++||+++....|.|
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            446899999999999997632100              00111222222 24478999997  3  67777777788888


Q ss_pred             EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC---C---EEEEecCCCeEEEEeC
Q 009373          405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA---D---RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~---~l~sg~~Dg~i~vW~~  466 (536)
                      |-............              ...+.|..+..++-.+.   .   .|++++=.|.+-+|++
T Consensus       192 Faf~l~~~r~~~~~--------------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVP--------------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEecccccccccc--------------ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            87654211111000              01144555544444322   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.79  E-value=13  Score=32.48  Aligned_cols=156  Identities=20%  Similarity=0.174  Sum_probs=84.1

Q ss_pred             ecCCEEEEecCCcEEEEeCC--CCcEEEEEccccccceEEEEEeCCCCEEEEEcCC---C---cEEEE-EcccCcccccc
Q 009373          300 PHDTTVASTSGSDVYIWDTN--SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED---G---AIHMY-EIINDCTEANV  370 (536)
Q Consensus       300 ~~~~~l~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d---g---~i~iw-d~~~~~~~~~~  370 (536)
                      ..+.+++++++..|.+|++.  ..+...+|.  .-+.|..+.++..|++|+|--.+   .   .+|+| +.+........
T Consensus        27 g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   27 GPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             CCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            33445555668889999988  345566664  56889999999999999985432   2   45665 22222111100


Q ss_pred             ceeeeccC---------------------CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          371 LLVATWIP---------------------HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       371 ~~~~~~~~---------------------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      ..+ .+-|                     -..++.+++-.|  .-|+.|+ ++++.+|.+.......      ....+..
T Consensus       105 v~v-RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~------~~~~~lD  176 (215)
T PF14761_consen  105 VRV-RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQS------EKFSFLD  176 (215)
T ss_pred             EEE-EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEec------ccccEEe
Confidence            110 1111                     133455565544  3444444 4578999887532210      0001111


Q ss_pred             eCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373          428 VEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      +. .....+........+++-++|+|..+. -.+++..+.
T Consensus       177 Fe-~~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl~  214 (215)
T PF14761_consen  177 FE-RSLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKLE  214 (215)
T ss_pred             ch-hhhhheecCceEEEEEEEeeEEEEecC-CEEEEEEEe
Confidence            11 111122233445667777888888874 457776653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.75  E-value=13  Score=32.26  Aligned_cols=127  Identities=14%  Similarity=0.103  Sum_probs=72.2

Q ss_pred             EecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEc----cccccceEEEEEeCC
Q 009373          269 GSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN----GAHVGNTKSLARSHT  343 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~----~~~~~~i~~l~~~~~  343 (536)
                      .-.||....+|.++.+++..+..++.=..+..++.-++.+. ..+++.-|..+.....++.    ...-..++-+.|- +
T Consensus       107 Tw~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-d  185 (262)
T COG3823         107 TWKEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-D  185 (262)
T ss_pred             EeccceeEEEChHHhhhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-c
Confidence            34577888999999999999988888888887777666666 5778888887654433332    1111222333332 3


Q ss_pred             CCEEEEEcCCCcEEEEEcccCccccc------cceeeeccCCCCCeEEEEEcC---CeEEEE
Q 009373          344 GDFLFTGGEDGAIHMYEIINDCTEAN------VLLVATWIPHTGPVNSLAFEF---PWLVSA  396 (536)
Q Consensus       344 ~~~l~tg~~dg~i~iwd~~~~~~~~~------~~~~~~~~~h~~~v~~l~~~~---~~l~s~  396 (536)
                      |...|-.-.+..|...|..+++...-      ...+..-..|....+.+++.|   .++++|
T Consensus       186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44444333333444444444421100      011122234566778899976   355555

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=89.36  E-value=0.34  Score=46.27  Aligned_cols=37  Identities=22%  Similarity=0.163  Sum_probs=32.3

Q ss_pred             ccCCcHHHHHHHhcCCC-hhhHHHHhhhhHHHHHHhcC
Q 009373           64 ITDLPPALISEILNCLD-PKELGIVSCVSPILHRLASD  100 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L~-~~~l~~~~~v~~~~~~l~~~  100 (536)
                      -+.||+|++..|...|+ .-|+.+++.||+.||..+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            35799999999999995 44999999999999987763

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.80  E-value=2.4  Score=37.72  Aligned_cols=70  Identities=9%  Similarity=0.110  Sum_probs=45.8

Q ss_pred             EeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc--------CCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCc
Q 009373          340 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--------PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       340 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  409 (536)
                      +..++.+|++-+.+|.+++||+.+.+.......+..+-        .....|..+..+. ...+..-.+|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence            44568899999999999999999885433221121111        3556777777753 3333344567889998653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=88.78  E-value=33  Score=35.76  Aligned_cols=158  Identities=11%  Similarity=0.176  Sum_probs=94.3

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCC-CCc------eEEEEe--cCCCEEEEEeC-CC---cE
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKP-LGC------TIRAVA--ADKKLLVAGGT-DG---FI  222 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~-~~~------~v~~~~--~~~~~l~sg~~-dg---~i  222 (536)
                      .+.|..+.|.+++..+++.-.+|.|.+||...+.  .+..+.. +..      -|..+.  ....++++-+. ++   ..
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            6788999999999999999999999999993332  1111111 111      111111  11334444443 32   24


Q ss_pred             EEEEcccCccceecccCcccccceEEee-----CCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecc-----
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLW-----EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-----  292 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----  292 (536)
                      +++.+....            .....+.     .+...=..+++..+.|+-- .+++|.+|++...+..+++.-.     
T Consensus       209 kL~~l~~~~------------~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~  275 (670)
T PF10395_consen  209 KLISLSNES------------SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDK  275 (670)
T ss_pred             EEEEeccCC------------cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhcc
Confidence            445441111            1111221     1222223445544444443 6789999999988877776622     


Q ss_pred             --ccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEc
Q 009373          293 --DWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN  328 (536)
Q Consensus       293 --~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  328 (536)
                        ..+.++. +..+.+..+.++.|++.|+.-...+..+.
T Consensus       276 ~~~~~vSl~~~s~nRvLLs~~nkIyLld~~~~siLse~~  314 (670)
T PF10395_consen  276 ESDDLVSLKPPSPNRVLLSVNNKIYLLDLKFESILSEFE  314 (670)
T ss_pred             ccccceEeecCCCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence              3566666 88889999999999999998766665554

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.57  E-value=8.3  Score=42.61  Aligned_cols=137  Identities=15%  Similarity=0.287  Sum_probs=83.6

Q ss_pred             EecCCeEEEEeCCCceEeEeee-ccccEEEEe---ec--------CCEEEEecCCcEEEEeCC----CCcEE-----EEE
Q 009373          269 GSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA---PH--------DTTVASTSGSDVYIWDTN----SGCLL-----TVV  327 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~---~~--------~~~l~~~~d~~i~i~d~~----~~~~~-----~~~  327 (536)
                      .+-|..+.+|+.+++.....+. ....|..+.   |.        ..+|+.++.-.|.++-+.    ++..-     ..+
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            4668999999999876666665 444555543   32        235566666666665332    22111     111


Q ss_pred             ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc-----------------cc-cceeeecc-CCCCCeEEEEE
Q 009373          328 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE-----------------AN-VLLVATWI-PHTGPVNSLAF  388 (536)
Q Consensus       328 ~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-----------------~~-~~~~~~~~-~h~~~v~~l~~  388 (536)
                      . .....|+++....+|+.+++| .||  .+|.+.-....                 .. +..+..+. .+..+|..+..
T Consensus       175 ~-~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I  250 (1311)
T KOG1900|consen  175 S-VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI  250 (1311)
T ss_pred             e-cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence            1 124568888877888877666 555  45554321110                 00 01122223 56789999999


Q ss_pred             cC--CeEEEEeCCCcEEEEECCc
Q 009373          389 EF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       389 ~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      +.  +.+++-+..|+|.+||+..
T Consensus       251 D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  251 DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ccccceeeeeccCceEEEEEccC
Confidence            75  7899999999999999976

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=88.50  E-value=10  Score=39.28  Aligned_cols=116  Identities=15%  Similarity=0.188  Sum_probs=69.6

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEe----cCCCEEEEEeCCCcEEEEEcccCccc
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA----ADKKLLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~----~~~~~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      ....-+.-+.-++..++-+....+.|||...+.....-. .....|.++.    |+++.+++.+....|.++.-..    
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R----  105 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR----  105 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc----
Confidence            334444444445555555556689999998876433221 3456676664    8999999999999999986421    


Q ss_pred             eecc-cCcccccc--eEEeeCCc-cCEEEEEE-eCCEEEEEecCCeEEEEeC
Q 009373          234 LFDI-SGSEKQNT--QFRLWEHE-GPITSLAL-DLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       234 ~~~~-~~~~~~~~--~~~~~~h~-~~v~~l~~-~~~~l~s~s~dg~i~iwd~  280 (536)
                       ++. ...+....  ...+..|+ .+|.+..| .++.++.|+ +..+.|+|-
T Consensus       106 -~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  106 -YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             -hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence             110 01111222  22334555 68889999 555555555 367888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.06  E-value=12  Score=29.88  Aligned_cols=109  Identities=16%  Similarity=0.084  Sum_probs=64.8

Q ss_pred             EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---e----CCEEEEEecCCeEEEEeCCCce
Q 009373          212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---D----LTRIYSGSWDMTVRVWDRALLK  284 (536)
Q Consensus       212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~----~~~l~s~s~dg~i~iwd~~~~~  284 (536)
                      .|+.++.-|.|.|.+..........      ......+..-...|++++-   +    .+.|+.|+. .++..||+....
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~------~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~   84 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGR------QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS   84 (136)
T ss_pred             eEEEEecCCEEEEECCCcccccccc------ccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence            4555566666666654332110000      1111222234556777765   2    356776664 688999998776


Q ss_pred             EeEeeeccccEEEEe------ecCCEEEEecCCcEEEEeCCCCcEEEEE
Q 009373          285 CLKVLRHSDWVYGLA------PHDTTVASTSGSDVYIWDTNSGCLLTVV  327 (536)
Q Consensus       285 ~~~~~~~~~~v~~~~------~~~~~l~~~~d~~i~i~d~~~~~~~~~~  327 (536)
                      .+....-++.|.++.      ....++++|++..|.-||..-.+...+.
T Consensus        85 d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   85 DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             hhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            665555567777765      2566777888888888887766655443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.67  E-value=25  Score=33.12  Aligned_cols=96  Identities=14%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             EEEeecCCEEEEec--CCcEEEEeCCC--C----cEEEEEccccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCcc
Q 009373          296 YGLAPHDTTVASTS--GSDVYIWDTNS--G----CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCT  366 (536)
Q Consensus       296 ~~~~~~~~~l~~~~--d~~i~i~d~~~--~----~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~  366 (536)
                      .+++|+++.+..+.  .+.|.-|++..  +    +..........+..-.++...+|.+.+++..+| .|.+|+.. +  
T Consensus       168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G--  244 (307)
T COG3386         168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G--  244 (307)
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C--
Confidence            34558998777766  47788887752  1    211222222445566777888888775555554 89999988 5  


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC---CeEEEEeC
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF---PWLVSAAG  398 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~  398 (536)
                          +.+....-....+++++|-+   +.|+..+.
T Consensus       245 ----~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         245 ----KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ----cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence                45665555667888999964   45544443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.57  E-value=46  Score=36.08  Aligned_cols=24  Identities=13%  Similarity=0.212  Sum_probs=20.4

Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCC
Q 009373          167 LASAKLLFTSGYDSIVRMWHLEDG  190 (536)
Q Consensus       167 ~~~~~~l~sgs~dg~v~iwd~~~~  190 (536)
                      ...|+.|..|+.||.+.+|.+.+.
T Consensus        23 a~~~~~l~vGt~~G~L~lY~i~~~   46 (877)
T KOG2063|consen   23 AAYGNHLYVGTRDGDLYLYSIYER   46 (877)
T ss_pred             HHhCCEEEEEcCCCcEEEEecccc
Confidence            345889999999999999998654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.85  E-value=18  Score=35.99  Aligned_cols=28  Identities=21%  Similarity=0.069  Sum_probs=23.0

Q ss_pred             cceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          333 GNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       333 ~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      -.|..+..++.|..++-.+.+|.+.++=
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL  131 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMEL  131 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence            3577888999999999999999776654

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.40  E-value=8  Score=37.46  Aligned_cols=164  Identities=13%  Similarity=0.060  Sum_probs=101.8

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-eee-CCCCce----EE---EEecCCCEEEEEeCCCc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASS-KPLGCT----IR---AVAADKKLLVAGGTDGF  221 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~-~~~~~~----v~---~~~~~~~~l~sg~~dg~  221 (536)
                      ++.+..--..|..+-..|||+.|+.-+. .++.++++.+.... +.+ ....+.    |.   .+-..|..+++++.||.
T Consensus       213 i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~  291 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGL  291 (733)
T ss_pred             hhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCc
Confidence            4445666677888889999998876665 68889998764321 111 111111    11   11245667899999999


Q ss_pred             EEEE-EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEE
Q 009373          222 IHCW-RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY  296 (536)
Q Consensus       222 i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~  296 (536)
                      |.-| |+..+.        +.....++.+.-...++..+..  +.+-+++-+..|++.++.....+.+-.-.  ....+.
T Consensus       292 vsQWFdvr~~~--------~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~  363 (733)
T COG4590         292 VSQWFDVRRDG--------QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLV  363 (733)
T ss_pred             eeeeeeeecCC--------CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCccee
Confidence            9888 333221        1111222222222344544544  33568888899999888765544433222  455667


Q ss_pred             EEeecCCEEEEecCCcEEEEeCCCCcE
Q 009373          297 GLAPHDTTVASTSGSDVYIWDTNSGCL  323 (536)
Q Consensus       297 ~~~~~~~~l~~~~d~~i~i~d~~~~~~  323 (536)
                      .++|++.++++-..|.++++.+++..+
T Consensus       364 ~~Sp~~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         364 AMSPNQAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             eeCcccchheeecCCceEEEEecCCCC
Confidence            788999999998899999998877544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.39  E-value=6.3  Score=43.45  Aligned_cols=182  Identities=15%  Similarity=0.156  Sum_probs=96.6

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe---cCC-------CEEEEEeCCCcEEEEE
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA---ADK-------KLLVAGGTDGFIHCWR  226 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~---~~~-------~~l~sg~~dg~i~vwd  226 (536)
                      |...=..|-+-|.=+.... +-|+.+.+|+.+++.....+.+....|..+.   |..       ++++.-+.--.|.++-
T Consensus        77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg  155 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG  155 (1311)
T ss_pred             CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence            3333344444444232222 4588999999999888888877777776654   433       2444444455566665


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEE
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV  305 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l  305 (536)
                      +.-.....    +........++....-.|.++.. +.+.++-++.||  .+|.+.-..      ..++-..        
T Consensus       156 V~~~~~~~----~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~------~~gWf~~--------  215 (1311)
T KOG1900|consen  156 VSFDEFTG----ELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG--NLYELVYQA------EDGWFGS--------  215 (1311)
T ss_pred             EEeccccC----cccccccceeeecCCceEEEEEeccCCcEEEeecCC--CEEEEEEec------cCchhhc--------
Confidence            43221000    00001111233334556788886 555555566666  455431000      0000000        


Q ss_pred             EEecCCcEEEEeCCCCc------EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          306 ASTSGSDVYIWDTNSGC------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       306 ~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                            ..+..++..+.      .+..+...+..+|..+......+.+.+=++.|+|.+||+....
T Consensus       216 ------rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G  275 (1311)
T KOG1900|consen  216 ------RCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG  275 (1311)
T ss_pred             ------ccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence                  01111111100      0111113477899999999999999999999999999997743

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=86.37  E-value=21  Score=37.05  Aligned_cols=165  Identities=12%  Similarity=0.074  Sum_probs=83.9

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      ...-++++.-+|.+.-++.+..||.|++|+.......+.... ..+-..+...+.-|++...|..+.-|.-..-....|+
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqqfd   91 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQFD   91 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccceEEEeccchhheeeccCcchhhcc
Confidence            345577888899999999999999999999865543211110 1111122233445777778888877764332222222


Q ss_pred             ccCcccccceEEee---------CCccCEEEEEE-------eCCEEEEEecCCeEEEEeCCCceEeEeeecccc-EEEEe
Q 009373          237 ISGSEKQNTQFRLW---------EHEGPITSLAL-------DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-VYGLA  299 (536)
Q Consensus       237 ~~~~~~~~~~~~~~---------~h~~~v~~l~~-------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-v~~~~  299 (536)
                      ............+-         .--+.|..+..       .+++=.+--.-..|.+-|+.++.....+.|.+. |--+.
T Consensus        92 yndqsekefss~~cdptaqnvvgtlcggv~q~dcclrr~i~knkfe~tyv~pshvilkdlsn~trt~l~s~~g~aidelk  171 (1636)
T KOG3616|consen   92 YNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDCCLRRGILKNKFELTYVAPSHVILKDLSNDTRTNLISHKGLAIDELK  171 (1636)
T ss_pred             ccchhhhhccceecCchhhhhhhhhccceeeehHHHHhHHHhccceeEEeccceeeeecccCCceEeeeecCCcchhhhh
Confidence            22111110000000         01122322222       111112222234566666666665555554432 22222


Q ss_pred             --ecCCEEEEecCCcEEEEeCCCCc
Q 009373          300 --PHDTTVASTSGSDVYIWDTNSGC  322 (536)
Q Consensus       300 --~~~~~l~~~~d~~i~i~d~~~~~  322 (536)
                        -..+++++-...+|.+=|+++.+
T Consensus       172 ilgkdryli~~ts~siii~d~es~r  196 (1636)
T KOG3616|consen  172 ILGKDRYLIAHTSESIIIADLESNR  196 (1636)
T ss_pred             hccccceEEeeccccEEEeecccch
Confidence              34566776667888888887754

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=86.33  E-value=35  Score=33.44  Aligned_cols=231  Identities=16%  Similarity=0.078  Sum_probs=129.6

Q ss_pred             cEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceeeeeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCcccee
Q 009373          160 AVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      ....+...+++..+. +-.....+...+............  ....-.++.+.+. ..++...+..|.+.|..+...   
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~---  108 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV---  108 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce---
Confidence            344566777774333 333333455555442211111111  1122345556666 455555568899998654321   


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec---CCeEEEEeCCCceEeEeeecc-cc-EEEEeecCCEEEEe
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALLKCLKVLRHS-DW-VYGLAPHDTTVAST  308 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~-~~-v~~~~~~~~~l~~~  308 (536)
                               ......+.  ....+++  +++.++.+..   ++++.+.|..+.+......-. .+ -..+.|++..++.+
T Consensus       109 ---------~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~  177 (381)
T COG3391         109 ---------LGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVT  177 (381)
T ss_pred             ---------eeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEE
Confidence                     11111122  3344555  6666655544   789999999999988886522 22 23344899977666


Q ss_pred             c--CCcEEEEeCCCCcEEE-EEc--cccccceEEEEEeCCCCEEEEEcCC---CcEEEEEcccCccccccceeee-ccCC
Q 009373          309 S--GSDVYIWDTNSGCLLT-VVN--GAHVGNTKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVAT-WIPH  379 (536)
Q Consensus       309 ~--d~~i~i~d~~~~~~~~-~~~--~~~~~~i~~l~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~-~~~h  379 (536)
                      .  ++.+.++|........ ...  ..-......+.++|+|..+.+....   +.+...|..++.      .... ....
T Consensus       178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~------v~~~~~~~~  251 (381)
T COG3391         178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN------VTATDLPVG  251 (381)
T ss_pred             ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce------EEEeccccc
Confidence            6  7899999977766553 100  1123345678899999966554443   588888888773      2221 1111


Q ss_pred             CCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcc
Q 009373          380 TGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL  410 (536)
Q Consensus       380 ~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~  410 (536)
                      ......+..+|  ..+.+.. ..+.+.+.|..+.
T Consensus       252 ~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~  285 (381)
T COG3391         252 SGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD  285 (381)
T ss_pred             cCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            11234455554  5665553 3478888888764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=86.31  E-value=29  Score=32.52  Aligned_cols=229  Identities=11%  Similarity=0.043  Sum_probs=98.2

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEEC-CCCceeeeeC--CC---CceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHL-EDGFSIASSK--PL---GCTIRAVAADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~-~~~~~~~~~~--~~---~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      -...+..|.|.....-+++|. .++|  +.. +.|+.-....  ..   .....++.+.+.....++..|.| +...+.+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~l-l~T~DgG   90 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLL-LHTTDGG   90 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEE-EEESSTT
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceE-EEecCCC
Confidence            345789999985555566554 4543  333 3333222211  11   12344555444444444555543 2222222


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCEE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l  305 (536)
                                .....+..-..-.+....+.. +......++..|.|..= .+.++.-..+.  ....+..+.  ++++++
T Consensus        91 ----------~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~v  159 (302)
T PF14870_consen   91 ----------KTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYV  159 (302)
T ss_dssp             ----------SS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EE
T ss_pred             ----------CCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEE
Confidence                      111111110111222333333 55555555555554332 22232222221  345566655  889999


Q ss_pred             EEecCCcE-EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc-ceeeeccCCCCCe
Q 009373          306 ASTSGSDV-YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV-LLVATWIPHTGPV  383 (536)
Q Consensus       306 ~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~h~~~v  383 (536)
                      +++..|.+ .-||.-...-.. ........|.++.|.|++.+.+++ ..|.|++=+.....  ... +.+.........+
T Consensus       160 avs~~G~~~~s~~~G~~~w~~-~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~  235 (302)
T PF14870_consen  160 AVSSRGNFYSSWDPGQTTWQP-HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGI  235 (302)
T ss_dssp             EEETTSSEEEEE-TT-SS-EE-EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE--EEE---B-TTSS--S-E
T ss_pred             EEECcccEEEEecCCCccceE-EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc--cccccccCCcccCceee
Confidence            99987665 467754322111 112356789999999998866654 88888887722211  000 1111122234457


Q ss_pred             EEEEEcC-CeEEEEeCCCcEEE
Q 009373          384 NSLAFEF-PWLVSAAGDGKLSL  404 (536)
Q Consensus       384 ~~l~~~~-~~l~s~s~dg~i~v  404 (536)
                      ..++|.+ +.+.+++..|.+.+
T Consensus       236 ld~a~~~~~~~wa~gg~G~l~~  257 (302)
T PF14870_consen  236 LDLAYRPPNEIWAVGGSGTLLV  257 (302)
T ss_dssp             EEEEESSSS-EEEEESTT-EEE
T ss_pred             EEEEecCCCCEEEEeCCccEEE
Confidence            8999975 66777777776654

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=86.26  E-value=6.4  Score=38.61  Aligned_cols=79  Identities=11%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe----cCC---------------C-
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADK---------------K-  211 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~----~~~---------------~-  211 (536)
                      ..|......+.++..+|++++.|+...=|.|.++|+.++..++-+++-...-..+.    ...               . 
T Consensus       301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l  380 (415)
T PF14655_consen  301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL  380 (415)
T ss_pred             EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence            44555666789999999999999988889999999999988877776554333322    111               1 


Q ss_pred             -EEEEEeCCCcEEEEEcccC
Q 009373          212 -LLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       212 -~l~sg~~dg~i~vwd~~~~  230 (536)
                       +++-+-.-|.|.||.++++
T Consensus       381 ~LvIyaprRg~lEvW~~~~g  400 (415)
T PF14655_consen  381 FLVIYAPRRGILEVWSMRQG  400 (415)
T ss_pred             EEEEEeccCCeEEEEecCCC
Confidence             2344566788999988765

>PLN02153 epithiospecifier protein

Probab=85.79  E-value=34  Score=32.85  Aligned_cols=61  Identities=20%  Similarity=0.182  Sum_probs=33.3

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCceeeeeCCC----Cc---eEEEEecCCCEEEEEeCC-----CcEEEEEccc
Q 009373          169 SAKLLFTSGYD-------SIVRMWHLEDGFSIASSKPL----GC---TIRAVAADKKLLVAGGTD-----GFIHCWRAVE  229 (536)
Q Consensus       169 ~~~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~~----~~---~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~  229 (536)
                      ++.+++.|+.+       ..+.+||+.+.+-.. ....    ..   .......++.+++.|+.+     ..+.+||+.+
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSI-APANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEE-cCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence            45666667653       357788887653221 1111    10   122334567777787754     3467777765


Q ss_pred             C
Q 009373          230 V  230 (536)
Q Consensus       230 ~  230 (536)
                      .
T Consensus       111 ~  111 (341)
T PLN02153        111 N  111 (341)
T ss_pred             C
Confidence            4

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.68  E-value=35  Score=32.85  Aligned_cols=42  Identities=12%  Similarity=0.229  Sum_probs=20.7

Q ss_pred             CcEEEEeCCCCcEEEEEccccc-cceEEEEEeCCCCEEEEEcCC
Q 009373          311 SDVYIWDTNSGCLLTVVNGAHV-GNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       311 ~~i~i~d~~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      ..+.+||..+++-...-..... ..-.+++ ..++++.+.|+.+
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence            3588899887654332111111 1112222 2356777777653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=84.92  E-value=2  Score=45.09  Aligned_cols=177  Identities=14%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccccc-ceeeeccCCCCCeEEEE
Q 009373          310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANV-LLVATWIPHTGPVNSLA  387 (536)
Q Consensus       310 d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~-~~~~~~~~h~~~v~~l~  387 (536)
                      .+.+++-+..+......+..+..+.+-.+.|.... ..+.  -.-|.+.|||+.--.-.-.. ..+.....-...+.-+.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            34455555443321112223455666666664311 1111  33467889987642111111 12333334445556666


Q ss_pred             EcC-----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEE
Q 009373          388 FEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVR  462 (536)
Q Consensus       388 ~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~  462 (536)
                      |.|     -++..+-.++.|++.+..+..+.....++.....       ...+...-..+-+++++|..++.++.||.++
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d-------~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTD-------MAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCccc-------HHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            754     5777777889999887765432111111111100       0111112233455788888999999999999


Q ss_pred             EEeCCc-hhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373          463 IWNFSQ-AFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       463 vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  513 (536)
                      +|.+.- |...                  .....+|.|++++--+|+.+.+.
T Consensus       261 f~Qiyi~g~~~------------------~rclhewkphd~~p~vC~lc~~~  294 (1283)
T KOG1916|consen  261 FYQIYITGKIV------------------HRCLHEWKPHDKHPRVCWLCHKQ  294 (1283)
T ss_pred             eeeeeeecccc------------------HhhhhccCCCCCCCceeeeeccc
Confidence            998752 2211                  12456788999888888885444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=84.63  E-value=25  Score=34.81  Aligned_cols=133  Identities=16%  Similarity=0.162  Sum_probs=79.0

Q ss_pred             EEEecCCeEEEEeCCCceEeEeee-ccccEEEEee--------cCCEEEEecCCcEEEEeCCCCc-EEEEEccccccceE
Q 009373          267 YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAP--------HDTTVASTSGSDVYIWDTNSGC-LLTVVNGAHVGNTK  336 (536)
Q Consensus       267 ~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~--------~~~~l~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~i~  336 (536)
                      ..|+....++--|++.|+.+.... +.+.+....|        +...|+.-++..|.-.|.+... .+....  .....+
T Consensus       484 ~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKdY~t  561 (776)
T COG5167         484 LDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKDYKT  561 (776)
T ss_pred             ecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--ehhccc
Confidence            345555667777888888888877 4444333333        3456777778777777876532 222211  111122


Q ss_pred             EEEEe----CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECC
Q 009373          337 SLARS----HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       337 ~l~~~----~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~  408 (536)
                      .-.|+    ....++++|+..|-|++||--..      ..-..+.+-...|..+...  +.++++.+. ..+.+-|++
T Consensus       562 Kn~Fss~~tTesGyIa~as~kGDirLyDRig~------rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         562 KNKFSSGMTTESGYIAAASRKGDIRLYDRIGK------RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cccccccccccCceEEEecCCCceeeehhhcc------hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            22222    23468999999999999995443      2223344556677777764  456555544 467777775

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.32  E-value=34  Score=31.50  Aligned_cols=124  Identities=10%  Similarity=0.070  Sum_probs=80.1

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      +.+.|-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.-   +........-++.+.++--.++.+.++.+.
T Consensus        79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204          79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            34556667799999999999999888888888888888988887643   222333444556666666677888887765


Q ss_pred             cCccceecccCcccccceEEee--CC-ccCEEEEEE--eCCEEEEEecCCeEEEEeCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLW--EH-EGPITSLAL--DLTRIYSGSWDMTVRVWDRA  281 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~--~h-~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~  281 (536)
                      .....+. .     ......+.  .+ +.....++|  ....|+.+-.-.-+.||...
T Consensus       159 ~~t~~~~-~-----~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         159 ADTTVIS-A-----KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             CCccEEe-c-----cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            5421110 0     00011111  22 556778888  34567777777777777665

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=84.30  E-value=41  Score=32.41  Aligned_cols=62  Identities=21%  Similarity=0.110  Sum_probs=30.4

Q ss_pred             CCCEEEEEeCC-CcEEEEECCCC----ceeeeeCC-CCceEEEEecCCCEEEEEeCC-----------CcEEEEEcccC
Q 009373          169 SAKLLFTSGYD-SIVRMWHLEDG----FSIASSKP-LGCTIRAVAADKKLLVAGGTD-----------GFIHCWRAVEV  230 (536)
Q Consensus       169 ~~~~l~sgs~d-g~v~iwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~  230 (536)
                      ++.+.+.|+.. ..+..+|+...    ..+..+.. ..........++.+.+.|+.+           ..+..||..+.
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~   95 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN   95 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence            45555555542 45666776322    12222221 111222334677777888753           24666776554

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=84.08  E-value=52  Score=33.49  Aligned_cols=146  Identities=16%  Similarity=0.122  Sum_probs=85.1

Q ss_pred             ccCEEEEEE-eCCEEEEEe---cCCeEEEEeCCCceEeEeeeccccEEEEe--e-----cCCEEEEecCCcEEEEeCC--
Q 009373          253 EGPITSLAL-DLTRIYSGS---WDMTVRVWDRALLKCLKVLRHSDWVYGLA--P-----HDTTVASTSGSDVYIWDTN--  319 (536)
Q Consensus       253 ~~~v~~l~~-~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~-----~~~~l~~~~d~~i~i~d~~--  319 (536)
                      -.+|..++| ||+.++-..   .+|.+++=|   .+.+..|+   .|..++  |     ...+||.-....|.||.+.  
T Consensus        19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s   92 (671)
T PF15390_consen   19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS   92 (671)
T ss_pred             hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence            357889999 887655432   344444433   22333443   345554  1     2356777778999999875  


Q ss_pred             ---CCcEEEEEc----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--C
Q 009373          320 ---SGCLLTVVN----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--F  390 (536)
Q Consensus       320 ---~~~~~~~~~----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~  390 (536)
                         +++.+..-.    ....--...+.|+|....|++-.....-.+++++...     ..+..-....+.|.|.+|.  +
T Consensus        93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~-----srVkaDi~~~G~IhCACWT~DG  167 (671)
T PF15390_consen   93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS-----SRVKADIKTSGLIHCACWTKDG  167 (671)
T ss_pred             ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC-----ceEEEeccCCceEEEEEecCcC
Confidence               223322211    1111123467799999888776666655677776653     2232223567889999994  4


Q ss_pred             CeEE-EEeCCCcEEEEECCc
Q 009373          391 PWLV-SAAGDGKLSLIDVRK  409 (536)
Q Consensus       391 ~~l~-s~s~dg~i~vwd~~~  409 (536)
                      .+|+ +.+..=.-++||-..
T Consensus       168 ~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             CEEEEEeCCeEEEEEecCch
Confidence            4444 444445578898543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=83.65  E-value=18  Score=34.59  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=34.5

Q ss_pred             ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee-eeccCCCCCeEEEEEcC
Q 009373          334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV-ATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~h~~~v~~l~~~~  390 (536)
                      ..++|+|.|+|.++++ ...|.|++++ ..+.....+..+ ............++++|
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p   58 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHP   58 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceecc
Confidence            4678999999987665 5599999999 333211111111 12234566889999998

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PLN02153 epithiospecifier protein

Probab=83.06  E-value=45  Score=32.02  Aligned_cols=103  Identities=17%  Similarity=0.083  Sum_probs=52.1

Q ss_pred             EeCCEEEEEecC-------CeEEEEeCCCceEeEeeec---cc----cEEEEeecCCEEEEec-C-----CcEEEEeCCC
Q 009373          261 LDLTRIYSGSWD-------MTVRVWDRALLKCLKVLRH---SD----WVYGLAPHDTTVASTS-G-----SDVYIWDTNS  320 (536)
Q Consensus       261 ~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~---~~----~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~  320 (536)
                      .++..++.|+.+       ..+.+||+.+.+-...-..   ..    ....+..++.+++.|+ +     ..+.+||+.+
T Consensus        31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t  110 (341)
T PLN02153         31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVK  110 (341)
T ss_pred             ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCC
Confidence            355666666653       3577888876543221111   11    1222335666666665 2     3588899987


Q ss_pred             CcEEEEEcc-----ccccceEEEEEeCCCCEEEEEcCC-----------CcEEEEEcccC
Q 009373          321 GCLLTVVNG-----AHVGNTKSLARSHTGDFLFTGGED-----------GAIHMYEIIND  364 (536)
Q Consensus       321 ~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~d-----------g~i~iwd~~~~  364 (536)
                      .+-...-..     .....-.+++ .-++++.+.|+.+           ..+.+||+.+.
T Consensus       111 ~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153        111 NEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             CEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            654321110     0011111222 2345667777754           24777887765

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=82.47  E-value=62  Score=33.17  Aligned_cols=231  Identities=12%  Similarity=0.047  Sum_probs=111.7

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEEEE-eCC--EEEEEecCC--eEEEEeCC
Q 009373          208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL-DLT--RIYSGSWDM--TVRVWDRA  281 (536)
Q Consensus       208 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~--~l~s~s~dg--~i~iwd~~  281 (536)
                      .++..++.+..+|.+....+.....           .......+. .....++++ +.+  +++.||.-|  .+.-|...
T Consensus       220 ~~~~~~lL~~e~G~l~~l~l~~~~~-----------~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~  288 (504)
T PF10433_consen  220 KDGDRILLQDEDGDLYLLTLDNDGG-----------SISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLS  288 (504)
T ss_dssp             TTSSEEEEEETTSEEEEEEEEEEEE-----------EEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESE
T ss_pred             CCCCEEEEEeCCCeEEEEEEEECCC-----------eEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCC
Confidence            4577899999999999887754310           112222222 445567777 666  888888644  55555655


Q ss_pred             CceEeEeeeccccEEEEee-----c-C-------CEEEEec---CCcEEEEeCCCCcEEE--E---EccccccceEEEEE
Q 009373          282 LLKCLKVLRHSDWVYGLAP-----H-D-------TTVASTS---GSDVYIWDTNSGCLLT--V---VNGAHVGNTKSLAR  340 (536)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~-----~-~-------~~l~~~~---d~~i~i~d~~~~~~~~--~---~~~~~~~~i~~l~~  340 (536)
                      ..+.+..+..-++|..+.-     . .       +++++++   +|.+++..  .|-...  .   ........++.+..
T Consensus       289 ~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~  366 (504)
T PF10433_consen  289 NLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKL  366 (504)
T ss_dssp             SEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-S
T ss_pred             CcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeee
Confidence            5566666777778887761     1 1       3344443   47787763  332222  1   11111334455543


Q ss_pred             eC-CCCEEEEEcCCCcEEEEEcccCccccccceee--eccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCC
Q 009373          341 SH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVA--TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPT  417 (536)
Q Consensus       341 ~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~  417 (536)
                      .. ++.+|+.+..+ .-+++.+...........+.  .+......+.+-.+..+.++=....+ |++.+.........  
T Consensus       367 ~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~-i~l~~~~~~~~~~~--  442 (504)
T PF10433_consen  367 SSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKG-IRLIDLEDGKLTQE--  442 (504)
T ss_dssp             SSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSE-EEEEESSSTSEEEE--
T ss_pred             cCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCe-EEEEECCCCeEEEE--
Confidence            32 24566666554 45566664200001111111  12222233333333345555444443 66776544211100  


Q ss_pred             CCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhh
Q 009373          418 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                                      ........|.+.+..+.+++.+-.+|.+..+.+.....
T Consensus       443 ----------------w~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~  480 (504)
T PF10433_consen  443 ----------------WKPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKI  480 (504)
T ss_dssp             ----------------EE-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEE
T ss_pred             ----------------EeCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCce
Confidence                            00113345666677777777777788999998876543

...

>PLN02193 nitrile-specifier protein

Probab=82.18  E-value=61  Score=32.87  Aligned_cols=148  Identities=14%  Similarity=-0.001  Sum_probs=71.4

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCceeeeeCC-----C-C-ceEEEEecCCCEEEEEeCCC-----cEEEEEccc
Q 009373          169 SAKLLFTSGYD-------SIVRMWHLEDGFSIASSKP-----L-G-CTIRAVAADKKLLVAGGTDG-----FIHCWRAVE  229 (536)
Q Consensus       169 ~~~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~-----~-~-~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~  229 (536)
                      ++.+++.|+.+       ..+.+||+.+.+-.. ...     . . ........++.+.+.|+.++     .+.++|+.+
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t  253 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT  253 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence            35566666643       247778887653221 111     1 0 11122335667777777653     577788765


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCC-----eEEEEeCCCceEeEeee------ccccEEEE
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLR------HSDWVYGL  298 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~------~~~~v~~~  298 (536)
                      ..-........   .     ......-.....++..++.|+.++     .+..||+.+.+-...-.      ........
T Consensus       254 ~~W~~l~~~~~---~-----P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~  325 (470)
T PLN02193        254 NEWKLLTPVEE---G-----PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE  325 (470)
T ss_pred             CEEEEcCcCCC---C-----CCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE
Confidence            43211100000   0     000111122233566666776543     46778877654322111      01111122


Q ss_pred             eecCCEEEEec-C----CcEEEEeCCCCcEEE
Q 009373          299 APHDTTVASTS-G----SDVYIWDTNSGCLLT  325 (536)
Q Consensus       299 ~~~~~~l~~~~-d----~~i~i~d~~~~~~~~  325 (536)
                      ..++++++.++ +    ..+.+||+.+.+...
T Consensus       326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~  357 (470)
T PLN02193        326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ  357 (470)
T ss_pred             EECCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence            35666666655 3    468999998876543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=82.13  E-value=84  Score=34.45  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=71.0

Q ss_pred             CCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEeecCCEEEEec-CCcE--EEEeCCCCcEE
Q 009373          251 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-GSDV--YIWDTNSGCLL  324 (536)
Q Consensus       251 ~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d~~i--~i~d~~~~~~~  324 (536)
                      .-.+.|.+++--.+++++| ....+++||+...+.++...   .+..|..+...+..++.|. ...+  ..|+...++.+
T Consensus       933 ~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~ 1011 (1205)
T KOG1898|consen  933 EIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLI 1011 (1205)
T ss_pred             CCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEE
Confidence            3456777777755555544 45799999998877766554   3667788888888888877 4444  44565555555


Q ss_pred             EEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373          325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       325 ~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~  362 (536)
                      ......-...++++.+- |...++.|..=|.+.+-.+.
T Consensus      1012 ~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1012 VFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            54444445566766655 44567777777776665543

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.52  E-value=92  Score=34.89  Aligned_cols=31  Identities=6%  Similarity=0.054  Sum_probs=26.0

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLED  189 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~  189 (536)
                      .....++|+|...++|.|..+|.|+++-...
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccc
Confidence            3455778999999999999999999998653

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=81.50  E-value=56  Score=31.97  Aligned_cols=62  Identities=18%  Similarity=0.049  Sum_probs=29.9

Q ss_pred             CCCEEEEEeC-CCcEEEEECCCC----ceeeeeCC-CCceEEEEecCCCEEEEEeCCC-----------cEEEEEcccC
Q 009373          169 SAKLLFTSGY-DSIVRMWHLEDG----FSIASSKP-LGCTIRAVAADKKLLVAGGTDG-----------FIHCWRAVEV  230 (536)
Q Consensus       169 ~~~~l~sgs~-dg~v~iwd~~~~----~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg-----------~i~vwd~~~~  230 (536)
                      ++.+.+.|+. +..+.++|+...    ..+..+.. ..........++.+.+.|+.+.           .+..||..+.
T Consensus        38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n  116 (376)
T PRK14131         38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN  116 (376)
T ss_pred             CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC
Confidence            3454444443 445677777532    11122211 1112223345677777777542           4666776554

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=81.25  E-value=31  Score=34.40  Aligned_cols=27  Identities=11%  Similarity=0.478  Sum_probs=20.2

Q ss_pred             EEEEEecC--CEEEEecCCCeEEEEeCCc
Q 009373          442 LLSVDIGA--DRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       442 v~~~~~~~--~~l~sg~~Dg~i~vW~~~~  468 (536)
                      +..+..++  +.+++...+|.|.+|++..
T Consensus       192 I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  192 IVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             eeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            66666554  4899999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=80.56  E-value=59  Score=31.63  Aligned_cols=32  Identities=19%  Similarity=0.327  Sum_probs=23.9

Q ss_pred             cccccEEEEEecCC-EEEEecCCCeEEEEeCCc
Q 009373          437 GFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       437 ~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~  468 (536)
                      .....+..++..|+ .+++=+.+..|.+|...+
T Consensus       428 s~~~~i~~ls~gGdRlfv~rs~~~~v~vw~~~~  460 (465)
T KOG2714|consen  428 SAGGLIVRLSSGGDRLFVVRSVESPVTVWEVLE  460 (465)
T ss_pred             ccCCcEEEEecCCeeEEEEEeccCceeEEEecC
Confidence            34456778888888 566777788899998765

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=80.42  E-value=35  Score=37.15  Aligned_cols=129  Identities=13%  Similarity=0.136  Sum_probs=83.7

Q ss_pred             CeEEEEeCC-Cce---EeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCCEE
Q 009373          273 MTVRVWDRA-LLK---CLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFL  347 (536)
Q Consensus       273 g~i~iwd~~-~~~---~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l  347 (536)
                      |.++.|++- .++   .++...-.+.+.++.|...++.+|-+..+++||+...++++.....+ ...|+.+.+  .+..+
T Consensus       912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI  989 (1205)
T KOG1898|consen  912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARI  989 (1205)
T ss_pred             CceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEE
Confidence            445555542 333   22222356678888888889999889999999999988877665444 456666666  46788


Q ss_pred             EEEcCCCcEEEEEcccCccccccceeeeccC--CCCCeEEEEE-cCCeEEEEeCCCcEEEEECC
Q 009373          348 FTGGEDGAIHMYEIINDCTEANVLLVATWIP--HTGPVNSLAF-EFPWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       348 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~  408 (536)
                      ++|...-.|.++-.+...     ..+..+..  -.-.|+++.+ +.+.++.+..=|.+.+-.+.
T Consensus       990 ~VgD~qeSV~~~~y~~~~-----n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen  990 VVGDIQESVHFVRYRRED-----NQLIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             EEeeccceEEEEEEecCC-----CeEEEEeCCCccceeeEEEEecCCceeeccccCcEEEEECC
Confidence            888877777776665442     22222222  2234555555 56788888888888777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	536
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-12
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-09
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-09
2h9l_A	329	Wdr5delta23 Length = 329		6e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		7e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		8e-07
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-04
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		7e-04

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/420 (20%), Positives = 163/420 (38%), Gaps = 54/420 (12%)
Query: 58  NLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGL--P 115
              R  I+ LP  L   +L+ L+PK+L   +        LA D+  W+E  C+  G+  P
Sbjct: 13  QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE-KCKEEGIDEP 71
Query: 116 IA---SAPLGAGFSDDKSWKELFVEREFRSKTFLGR---YSIDVLYGHTEAVLTVFVLAS 169
           +       +  GF     WK  ++ R+ R  T   R    S  VL GH + V+T      
Sbjct: 72  LHIKRRKVIKPGFIH-SPWKSAYI-RQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCG 129
Query: 170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE 229
            +++  S  D+ +++W    G  + +       + +      ++++G TD  +  W A  
Sbjct: 130 NRIVSGSD-DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA-- 186
Query: 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL 289
                      E       L+ H   +  + L   R+ SGS D T+RVWD    +CL VL
Sbjct: 187 -----------ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL 235
Query: 290 RHSDWVYGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL 347
                      +D     +   D  V +WD  +   L  + G H     SL     G  +
Sbjct: 236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSL--QFDGIHV 292
Query: 348 FTGGEDGAIHMYEI-INDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 406
            +G  D +I ++++   +C       + T   H    + +  +   LVS   D  + + D
Sbjct: 293 VSGSLDTSIRVWDVETGNC-------IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 345
Query: 407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 466
           ++         +G+ +     ++ P +      C    +    + ++   ++G V++W+ 
Sbjct: 346 IK---------TGQCLQ---TLQGPNKHQSAVTC----LQFNKNFVITSSDDGTVKLWDL 389

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 100 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 143
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 204 QCLKTLID 211

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 102 NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 145
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 206 QCLKTLID 213

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 31/240 (12%)
Query: 256 ITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD-- 312
           +  L  D  +I SG  D T+++WD+  L+C ++L  H+  V  L  +D  V  T  SD  
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ-YDERVIITGSSDST 194
Query: 313 VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL 372
           V +WD N+G +L  +   H        R + G  + T  +D +I ++++    +  ++ L
Sbjct: 195 VRVWDVNTGEMLNTL--IHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDM---ASPTDITL 248
Query: 373 VATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID------VRKL-----------LRSGR 415
               + H   VN + F+  ++VSA+GD  + + +      VR L            R   
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL 308
Query: 416 PTSGKRVSRV----IEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE 471
             SG   + +    IE     R+L G E  +  +     RIV G  +G +++W+   A +
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD 368

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 31/205 (15%)
Query: 139 EFRSKT--FLGRYSID-VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SI 193
           EF+SK       Y++   L GHT+AV +V    + + L +S  D ++++W   DG     
Sbjct: 7   EFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 194 ASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFR 248
            S   LG +  A ++D  LLV+   D  +  W          D+S  +     K ++ + 
Sbjct: 67  ISGHKLGISDVAWSSDSNLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYV 116
Query: 249 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVA 306
              +  P ++L      I SGS+D +VR+WD    KCLK L  HSD V  +    D ++ 
Sbjct: 117 FCCNFNPQSNL------IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 170
Query: 307 STSGSD--VYIWDTNSG-CLLTVVN 328
            +S  D    IWDT SG CL T+++
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLID 195

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 95  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 138
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 199 QCLKTLID 206

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 84  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 188 QCLKTLID 195

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 83  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 126
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 187 QCLKTLID 194

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 78  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 182 QCLKTLID 189

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 78  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 121
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 182 QCLKTLID 189

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 84  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 127
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 188 QCLKTLID 195

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 79  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 122
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 183 QCLKTLID 190

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 77  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 120
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 181 QCLKTLID 188

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 74  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 117
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 178 QCLKTLID 185

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L  S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD    KCLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD     CLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVAADK 210
            L GHT+AV +V    + + L +S  D ++++W   DG      S   LG +  A ++D 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSE-----KQNTQFRLWEHEGPITSLALDLTR 265
            LLV+   D  +  W          D+S  +     K ++ +    +  P ++L      
Sbjct: 81  NLLVSASDDKTLKIW----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNL------ 124
Query: 266 IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA-PHDTTVASTSGSD--VYIWDTNSG 321
           I SGS+D +VR+WD     CLK L  HSD V  +    D ++  +S  D    IWDT SG
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 322 -CLLTVVN 328
            CL T+++
Sbjct: 185 QCLKTLID 192

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 36/241 (14%)
Query: 145 FLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR 204
           F G   I  ++GH   V +V ++ +   + ++  D  ++MW ++ G+ + +       +R
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 205 AV--AADKKLLVAGGTDGFIHCW---------------RAVEVL---PHLFDISGSEKQN 244
            V    D  L+ +   D  +  W                 VE +   P     S SE   
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Query: 245 TQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPHDT 303
           ++ +     GP          + SGS D T+++WD +   CL  L  H +WV G+  H  
Sbjct: 299 SETKKSGKPGPF---------LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG 349
Query: 304 TVASTSGSD---VYIWD-TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359
                S +D   + +WD  N  C+ T+   AH     SL    T  ++ TG  D  + ++
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTL--NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 360 E 360
           E
Sbjct: 408 E 408

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 27/210 (12%)
Query: 168 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV----AADKKLLVAGGTDGFIH 223
           A   +L +   D  VR+W ++ G      +    T+R +      + K +V G  D  +H
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 224 CWRAVEV-----------LPHLFDISGSEKQNTQFR--LWEHEGPITSLALDLTRIYSGS 270
            W+  +             P +F    + ++N  F   L  H   + +++     + SGS
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 287
Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VASTSGSDVYIWDTNSGCLLTV 326
           +D T+ VWD A +KCL +L  H+D +Y  +  H+    ++++  + + IWD  +G L+  
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356
           + G H      L  S    FL +   DG+I
Sbjct: 348 LQG-HTALVGLLRLS--DKFLVSAAADGSI 374

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 29/244 (11%)
Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A 208
           +  L GH+ +V  V      + + ++  D  V++W+  +G  + +      ++R VA   
Sbjct: 50  LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 209 DKKLLVAGGTDGFIHCW-RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIY 267
           D + + +   D  +  W R  ++L  L   S S        +W       + + D   I 
Sbjct: 109 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS--------VWG-----VAFSPDGQTIA 155
Query: 268 SGSWDMTVRVWDR--ALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD-VYIWDTNSGCLL 324
           S S D TV++W+R   LL+ L     S W    +P   T+AS S    V +W+ N G LL
Sbjct: 156 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLL 214
Query: 325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 384
             + G H  + + +A S  G  + +  +D  + ++         N  L+ T   H+  VN
Sbjct: 215 QTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLW-------NRNGQLLQTLTGHSSSVN 266
Query: 385 SLAF 388
            +AF
Sbjct: 267 GVAF 270

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 27/210 (12%)
Query: 168 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV----AADKKLLVAGGTDGFIH 223
           A   +L +   D  VR+W ++ G      +    T+R +      + K +V G  D  +H
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 224 CWRAVEV-----------LPHLFDISGSEKQNTQFR--LWEHEGPITSLALDLTRIYSGS 270
            W+  +             P +F    + ++N  F   L  H   + +++     + SGS
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFH---TPEENPYFVGVLRGHXASVRTVSGHGNIVVSGS 287
Query: 271 WDMTVRVWDRALLKCLKVLR-HSDWVYG-LAPHDTT--VASTSGSDVYIWDTNSGCLLTV 326
           +D T+ VWD A  KCL +L  H+D +Y  +  H+    ++++  + + IWD  +G L   
Sbjct: 288 YDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYT 347
Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAI 356
           + G H      L  S    FL +   DG+I
Sbjct: 348 LQG-HTALVGLLRLS--DKFLVSAAADGSI 374

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR----AVAAD 209
           L GH+  V  V +  +     ++ +D  +R+W+L++G      K LG T      A + D
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNG--QCQYKFLGHTKDVLSVAFSPD 120
Query: 210 KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG 269
            + +V+GG D  +  W       H           +  R         S +LD   I SG
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRF--------SPSLDAPVIVSG 172
Query: 270 SWDMTVRVWDRALLKCLKVLR-HSDWVYG--LAPHDTTVASTSGSDVY-IWDTNSGCLLT 325
            WD  V+VWD A  + +  L+ H+++V    ++P  +  AS+    V  +WD   G  L+
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALS 232

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/339 (20%), Positives = 135/339 (39%), Gaps = 47/339 (13%)
Query: 154 LYGHTEAVLTVFV-LASAKLLFTSGYDSIVRMWHL---EDGFSIASSKPLG----CTIRA 205
           +  HT+ V  +   + +A ++ ++  D  + +W L   +  + +A  +  G         
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLA--LDL 263
           +++D +  ++G  DG +  W          D++         R   H   + S+A  LD 
Sbjct: 438 LSSDGQFALSGSWDGELRLW----------DLAAGVSTR---RFVGHTKDVLSVAFSLDN 484
Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWV--YGLAPHD---TTVASTSGSDV 313
            +I S S D T+++W+  L +C   +      H DWV     +P+    T V+++    V
Sbjct: 485 RQIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 314 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373
            +W+  S C L      H G   ++A S  G    +GG+DG + ++    D  E   L  
Sbjct: 544 KVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW----DLAEGKKLYS 598
Query: 374 ATWIPHTGPVNSLAFEFP---WLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRVIEVE 429
              +     +++L F  P   WL +A   G K+  ++ + ++   +        +     
Sbjct: 599 ---LEANSVIHALCFS-PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSG 654
Query: 430 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468
           P         C  L+       +  G  +G++R+W   +
Sbjct: 655 PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 27/189 (14%)
Query: 189 DGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQ 246
           +  + +SS      IR+V  + D K L  G  D  I  W          DI   E +   
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW----------DI---ENRKIV 158
Query: 247 FRLWEHEGPITSLALDLT--RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD 302
             L  HE  I SL    +  ++ SGS D TVR+WD    +C   L   D V  +A  P D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 303 TTVASTSGSD--VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDG 354
               +    D  V +WD+ +G L+  ++        H  +  S+  +  G  + +G  D 
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 355 AIHMYEIIN 363
           ++ ++ + N
Sbjct: 279 SVKLWNLQN 287

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 26/164 (15%)
Query: 145 FLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED---GFSIASSKPLGC 201
           F G      L GH + V  V  +  +K+   S  D  VR+W  +D   G  + + +    
Sbjct: 5   FTGYQLSATLKGHDQDVRDVVAVDDSKVASVS-RDGTVRLWSKDDQWLGTVVYTGQGFLN 63
Query: 202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL 261
           ++    ++K+LL+ GG D  I+       +P LF  SG   ++  + L  H+G + SL+ 
Sbjct: 64  SV-CYDSEKELLLFGGKDTXING------VP-LFATSG---EDPLYTLIGHQGNVCSLSF 112
Query: 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV 305
               + SGSWD T +VW    L           VY L  H+ +V
Sbjct: 113 QDGVVISGSWDKTAKVWKEGSL-----------VYNLQAHNASV 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	536
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.98
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.86
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.84
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.83
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.83
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.78
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.76
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.69
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.67
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.66
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.64
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.63
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.53
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.5
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.48
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.47
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.47
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.47
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.46
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.44
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.44
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.43
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.42
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.41
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.4
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.4
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.35
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.33
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.32
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.31
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.31
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.26
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.26
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.23
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.23
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.23
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.22
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.15
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.14
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.08
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.08
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.05
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.01
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.99
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.94
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.93
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.93
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.92
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.92
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.91
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.88
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.87
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.82
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.79
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.79
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.79
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.76
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.67
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.67
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.66
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.65
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.63
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.6
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.59
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.56
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.43
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.4
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.37
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.36
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.34
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.28
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.2
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.16
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.08
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.0
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.96
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.95
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.84
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.83
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.81
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.74
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.72
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.71
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.7
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.68
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.61
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.58
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.58
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.51
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.5
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.45
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.43
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.39
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.27
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.2
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.1
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.08
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.05
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.05
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.01
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.01
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.98
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.87
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.84
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.83
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.83
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.81
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.8
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.76
3ott_A	758	Two-component system sensor histidine kinase; beta	96.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.64
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.58
3ott_A	758	Two-component system sensor histidine kinase; beta	96.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.45
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.36
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.32
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.25
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	96.17
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.01
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.99
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.77
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	95.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.43
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.42
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	95.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.34
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	94.76
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	93.98
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.67
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.58
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	93.35
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.65
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	92.33
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	92.32
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	91.86
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	87.32
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	87.07
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	85.39
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	81.98

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=2.4e-54  Score=433.58  Aligned_cols=411  Identities=19%  Similarity=0.279  Sum_probs=344.4

Q ss_pred             ccccccccccccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCC----CCCCCCCCC
Q 009373           54 DVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAP----LGAGFSDDK  129 (536)
Q Consensus        54 ~~~~~~~~~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~----~~~~~~~~~  129 (536)
                      .+.|.++.|++..||+|++.+||+||++.+|+++++|||+|+.++.++.+|+.++...+ .......    .........
T Consensus         9 ~~~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   87 (445)
T 2ovr_B            9 VIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG-IDEPLHIKRRKVIKPGFIHS   87 (445)
T ss_dssp             HHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT-CCSCCCCCC--CCSSCCCCC
T ss_pred             hcCccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecc-cccccccccceecCCCccCC
Confidence            45677889999999999999999999999999999999999999999999999765443 2111110    001112345


Q ss_pred             Cchhhhhhhhh-hccccCCcc-ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe
Q 009373          130 SWKELFVEREF-RSKTFLGRY-SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA  207 (536)
Q Consensus       130 ~Wk~~~~~~~~-~~~~~~~~~-~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~  207 (536)
                      .|+..|..+.. ..+|..|++ ....+.+|.+.|.. ++.+++++|++|+.||+|++||+.+++.+..+.+|...|.++.
T Consensus        88 ~wk~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~  166 (445)
T 2ovr_B           88 PWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ  166 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEE
T ss_pred             cHHHHHhhhhhhhhcccCCCcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            69999887653 445555555 56789999997643 2455699999999999999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeE
Q 009373          208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK  287 (536)
Q Consensus       208 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~  287 (536)
                      .+++.+++|+.||+|++||+.++.             ....+.+|...|.+++++++.+++|+.||+|++||+.+++.+.
T Consensus       167 ~~~~~l~s~~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~  233 (445)
T 2ovr_B          167 MRDNIIISGSTDRTLKVWNAETGE-------------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH  233 (445)
T ss_dssp             EETTEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             ecCCEEEEEeCCCeEEEEECCcCc-------------EEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            889999999999999999997753             5667789999999999999999999999999999999999988


Q ss_pred             eee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          288 VLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       288 ~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      .+. |...|.++..++..+++++ |+.|++||+++++.+..+. +|...|.++.|  ++.++++|+.||.|++||++++ 
T Consensus       234 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-  309 (445)
T 2ovr_B          234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-  309 (445)
T ss_dssp             EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-
T ss_pred             EEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-
Confidence            887 8999999999999998888 8999999999999999886 69999999999  7899999999999999999988 


Q ss_pred             cccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec---cccccE
Q 009373          366 TEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH---GFECNL  442 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v  442 (536)
                           ..+..+.+|...+.++.++++++++|+.||.|++||++++..                   ...+.   .|...|
T Consensus       310 -----~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-------------------~~~~~~~~~~~~~v  365 (445)
T 2ovr_B          310 -----NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC-------------------LQTLQGPNKHQSAV  365 (445)
T ss_dssp             -----CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCE-------------------EEEECSTTSCSSCE
T ss_pred             -----CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE-------------------EEEEccCCCCCCCE
Confidence                 677888999999999999999999999999999999987422                   12223   377889


Q ss_pred             EEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373          443 LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       443 ~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                      .++.+++++|++|+.||.|++||+.+++.+.......     .........+++|+|+|..+++++.+.+
T Consensus       366 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~la~~~~dg~  430 (445)
T 2ovr_B          366 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE-----SGGSGGVVWRIRASNTKLVCAVGSRNGT  430 (445)
T ss_dssp             EEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECT-----TGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccc-----cCCCCceEEEEEecCCEEEEEEcccCCC
Confidence            9999999999999999999999999987654331100     1122345678999999999998877655

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.2e-52  Score=419.70  Aligned_cols=386  Identities=19%  Similarity=0.280  Sum_probs=313.9

Q ss_pred             cccccccccccCCcHH----HHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCC-------------
Q 009373           55 VLSNLHRSTITDLPPA----LISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIA-------------  117 (536)
Q Consensus        55 ~~~~~~~~~l~~Lp~e----i~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~-------------  117 (536)
                      +.|.+++|+|..||+|    |+.+||+|||+++|+++++|||+|+.++.++.+|+.+|.+.+.....             
T Consensus         2 ~~~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~   81 (435)
T 1p22_A            2 PAIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQY   81 (435)
T ss_dssp             CCCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGG
T ss_pred             CChhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhh
Confidence            4678899999999999    99999999999999999999999999999999999988776521100             


Q ss_pred             ---CCCCCCCCCCCCCchhhhhhh-----hhhccccCCccceeeee---CccccEEEEEEecCCCEEEEEeCCCcEEEEE
Q 009373          118 ---SAPLGAGFSDDKSWKELFVER-----EFRSKTFLGRYSIDVLY---GHTEAVLTVFVLASAKLLFTSGYDSIVRMWH  186 (536)
Q Consensus       118 ---~~~~~~~~~~~~~Wk~~~~~~-----~~~~~~~~~~~~~~~l~---~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd  186 (536)
                         ..+.....+....|+..+...     ..+.+|..|++....+.   +|...|+++++  ++++|++|+.||+|++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd  159 (435)
T 1p22_A           82 LFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD  159 (435)
T ss_dssp             CC---------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEE
T ss_pred             hhccCCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEe
Confidence               000000111122233333321     23556767777666655   46667999877  799999999999999999


Q ss_pred             CCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEE
Q 009373          187 LEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI  266 (536)
Q Consensus       187 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l  266 (536)
                      +.+++.+..+.+|...|.++.++++.|++|+.||+|++||+.++.             ....+.+|...|.+++|+++.+
T Consensus       160 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~l  226 (435)
T 1p22_A          160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGE-------------MLNTLIHHCEAVLHLRFNNGMM  226 (435)
T ss_dssp             SSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCC-------------EEEEECCCCSCEEEEECCTTEE
T ss_pred             CCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCc-------------EEEEEcCCCCcEEEEEEcCCEE
Confidence            999999999999999999999999999999999999999997753             5667789999999999999999


Q ss_pred             EEEecCCeEEEEeCCCceEe---Eeee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe
Q 009373          267 YSGSWDMTVRVWDRALLKCL---KVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS  341 (536)
Q Consensus       267 ~s~s~dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~  341 (536)
                      ++|+.||.|++||+.+++..   ..+. |...|.++..+++++++++ |+.|++||+++++.+..+. +|...|.++.++
T Consensus       227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~  305 (435)
T 1p22_A          227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR  305 (435)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE
T ss_pred             EEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC
Confidence            99999999999999987765   3333 8899999999999999988 8999999999999999886 699999999984


Q ss_pred             CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCc
Q 009373          342 HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  421 (536)
Q Consensus       342 ~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  421 (536)
                        +.++++|+.||.|++||++++      .++..+.+|...|.+++|++.+|++|+.||.|++||+.+.........   
T Consensus       306 --~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---  374 (435)
T 1p22_A          306 --DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG---  374 (435)
T ss_dssp             --TTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT---
T ss_pred             --CCEEEEEeCCCeEEEEECCCC------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCcccccc---
Confidence              689999999999999999988      678888999999999999999999999999999999987543221111   


Q ss_pred             eeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHH
Q 009373          422 VSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                             ......+.+|...|.++.+++.+|++|+.||.|++||+.++.....
T Consensus       375 -------~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          375 -------TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQA  420 (435)
T ss_dssp             -------TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC---------
T ss_pred             -------chheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCCCccc
Confidence                   1134456788899999999999999999999999999998765443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=3.9e-52  Score=419.96  Aligned_cols=404  Identities=20%  Similarity=0.244  Sum_probs=321.4

Q ss_pred             ccccccccccccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcC-ChhhHHHHHhHhCCCCCCCC--------CCCC
Q 009373           54 DVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASD-HHAWKEFYCERWGLPIASAP--------LGAG  124 (536)
Q Consensus        54 ~~~~~~~~~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~-~~lW~~~~~~~~~~~~~~~~--------~~~~  124 (536)
                      .+.|++++|||..||+|++++||+|||+++|+++++|||.|++++.+ +.+|+.++....-.......        ....
T Consensus         5 ~~~~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (464)
T 3v7d_B            5 LIKDNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPK   84 (464)
T ss_dssp             ----CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTT
T ss_pred             ccCcccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCC
Confidence            46788999999999999999999999999999999999999999998 89999987544322211100        0001


Q ss_pred             CCCCCCchhhhhhhhhh-ccccCCc--cceeeeeCccccE-EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC
Q 009373          125 FSDDKSWKELFVEREFR-SKTFLGR--YSIDVLYGHTEAV-LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG  200 (536)
Q Consensus       125 ~~~~~~Wk~~~~~~~~~-~~~~~~~--~~~~~l~~h~~~V-~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~  200 (536)
                      ......|+..|..+... .+|..+.  .....+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+..+.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~  162 (464)
T 3v7d_B           85 LSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD  162 (464)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             cccchhhHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC
Confidence            11234577666555432 2333443  3567899999985 56555  57899999999999999999999999999999


Q ss_pred             ceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCe
Q 009373          201 CTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMT  274 (536)
Q Consensus       201 ~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~  274 (536)
                      ..|.++.  +++ .+++|+.||+|++||+.++.             ....+.+|.+.|.++++    ++.++++|+.||+
T Consensus       163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~  228 (464)
T 3v7d_B          163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC-------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT  228 (464)
T ss_dssp             SCEEEEEECSTT-EEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred             cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc-------------EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence            9999887  444 99999999999999997753             56678889999999998    3478999999999


Q ss_pred             EEEEeCCCceEe-----------------------Eeee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcc
Q 009373          275 VRVWDRALLKCL-----------------------KVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       275 i~iwd~~~~~~~-----------------------~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~  329 (536)
                      |++||+.++...                       ..+. |...+.++.+++.++++++ |+.|++||+++++.+..+. 
T Consensus       229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-  307 (464)
T 3v7d_B          229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-  307 (464)
T ss_dssp             EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-
T ss_pred             EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec-
Confidence            999999876532                       2333 7888999999999999988 8999999999999999885 


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCc
Q 009373          330 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       330 ~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~  409 (536)
                      +|...|.+++|+|+++++++|+.||.|++||++++      .++..+.+|...|.+++|++.+|++++.||.|++||+++
T Consensus       308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence            69999999999999999999999999999999988      678889999999999999999999999999999999987


Q ss_pred             ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHH
Q 009373          410 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMR  489 (536)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~  489 (536)
                      .....                  ...+.+...+.++.+++.++++|+ ||.|++||+.+++.+......         ..
T Consensus       382 ~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~---------~~  433 (464)
T 3v7d_B          382 YSRKF------------------SYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK---------DA  433 (464)
T ss_dssp             CCEEE------------------EEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT---------TC
T ss_pred             Cceee------------------eecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc---------CC
Confidence            42211                  112445567778888999999999 999999999998776532211         12


Q ss_pred             hhhhccccccCCCCcceeEee
Q 009373          490 RRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       490 ~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      ....+++|+  |+.++++...
T Consensus       434 ~~v~~v~~~--~~~l~~~~~~  452 (464)
T 3v7d_B          434 DQIWSVNFK--GKTLVAAVEK  452 (464)
T ss_dssp             SEEEEEEEE--TTEEEEEEEE
T ss_pred             CcEEEEEec--CCEEEEEEEe
Confidence            345677775  5666655443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.2e-43  Score=349.23  Aligned_cols=278  Identities=22%  Similarity=0.374  Sum_probs=250.4

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ....+.+|.++|++++|+|++.+|++|+.||+|++||+.+++....+.+|...|.++.  +++++|++|+.||+|++||+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            3568899999999999999999999999999999999999999999999999887765  88999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                      .++             .....+.+|...|.+++|  +++.|++|+.|++|++||+.++.++..+. |...|.++.  +++
T Consensus       180 ~~~-------------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g  246 (410)
T 1vyh_C          180 QGF-------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG  246 (410)
T ss_dssp             TSS-------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCC-------------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC
Confidence            664             256677899999999999  67899999999999999999999998887 888898887  788


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC--------------------CCEEEEEcCCCcEEEEEc
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--------------------GDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~--------------------~~~l~tg~~dg~i~iwd~  361 (536)
                      .++++++ |+.|++||+.+++....+. +|...|.+++|+|+                    +.+|++|+.||.|++||+
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~  325 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  325 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             CEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            9999988 8999999999999988885 69999999999996                    678999999999999999


Q ss_pred             ccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373          362 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  439 (536)
Q Consensus       362 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (536)
                      +++      .++..+.+|...|++++|+|  .+|++|+.||.|++||+.+.                   .....+.+|.
T Consensus       326 ~~~------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-------------------~~~~~~~~h~  380 (410)
T 1vyh_C          326 STG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-------------------RCMKTLNAHE  380 (410)
T ss_dssp             TTT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-------------------CCCEEEECCS
T ss_pred             CCC------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------ceEEEEcCCC
Confidence            988      67888899999999999986  79999999999999999763                   3344567888


Q ss_pred             ccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373          440 CNLLSVDIGAD--RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~~  466 (536)
                      ..|.++.++++  +|+||+.||+|++|++
T Consensus       381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          381 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            88988888765  9999999999999986

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6e-42  Score=330.44  Aligned_cols=281  Identities=17%  Similarity=0.287  Sum_probs=245.5

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+++.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+..|...+.++  +|++++|++|+.|+.|++|++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            357899999999999999999999999999999999999999999998888877665  489999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      .+..         ........+.+|.+.|.++.| +++.+++++.|++|++||+.+++.+..+. |...|.+++  |++.
T Consensus       127 ~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~  197 (340)
T 1got_B          127 KTRE---------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             TTCS---------BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred             ccCC---------CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC
Confidence            7642         112345567899999999999 66789999999999999999999998887 889999887  7889


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc--CCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--PHT  380 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~  380 (536)
                      ++++++ |+.|++||+++++....+. +|...|++++|+|++++|++|+.||.|++||++..      ..+..+.  .+.
T Consensus       198 ~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~~~~~  270 (340)
T 1got_B          198 LFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNII  270 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCTTCC
T ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC------cEEEEEccCCcc
Confidence            999988 9999999999999998885 69999999999999999999999999999999887      3333332  344


Q ss_pred             CCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEec
Q 009373          381 GPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGG  456 (536)
Q Consensus       381 ~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~  456 (536)
                      ..|++++|+|  .+|++|+.||.|++||+.+.                   .....+.+|...|.++.++++  +|+||+
T Consensus       271 ~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s  331 (340)
T 1got_B          271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTC-------------------CEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred             cceEEEEECCCCCEEEEECCCCeEEEEEcccC-------------------cEeeEeecCCCcEEEEEEcCCCCEEEEEc
Confidence            6899999986  79999999999999999773                   233456789999988887765  999999


Q ss_pred             CCCeEEEEe
Q 009373          457 EEGIVRIWN  465 (536)
Q Consensus       457 ~Dg~i~vW~  465 (536)
                      .||.|++||
T Consensus       332 ~D~~i~iWd  340 (340)
T 1got_B          332 WDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEC
T ss_pred             CCccEEecC
Confidence            999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-41  Score=325.12  Aligned_cols=278  Identities=20%  Similarity=0.253  Sum_probs=242.8

Q ss_pred             eeeeeCccccEEEEEEecC----CCEEEEEeCCCcEEEEECCCCce--eeeeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009373          151 IDVLYGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA--ADKKLLVAGGTDGFI  222 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~----~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i  222 (536)
                      .+.+.+|.+.|++++|+|+    +.+|+||+.|++|+||++.++..  ...+.+|...|.++.  +++..+++|+.|++|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            4677899999999999985    56999999999999999987753  456789999887765  788999999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA  299 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  299 (536)
                      ++||+.++.             ....+..|...+.+++|  ++++|++|+.||.|++||+++++....+. +...|.+++
T Consensus       105 ~lWd~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A          105 RLWDLENGK-------------QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             EEEETTTTE-------------EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred             EEEECCCCC-------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence            999997753             45567788888999999  77899999999999999999998888776 777788877


Q ss_pred             --ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373          300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                        |++++|++++ |+.|++||+++++.+..+. +|...|++++|+|++++|++|+.||.|++||+++.      .....+
T Consensus       172 ~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~------~~~~~~  244 (321)
T 3ow8_A          172 YSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA------NLAGTL  244 (321)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC------CEEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc------ceeEEE
Confidence              8999999998 8999999999999998885 69999999999999999999999999999999887      567888


Q ss_pred             cCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EE
Q 009373          377 IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI  452 (536)
Q Consensus       377 ~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l  452 (536)
                      .+|...|.+++|+|  .+|++++.|++|++||+++.                   .+...+.+|...|.++.++++  +|
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-------------------~~~~~~~~h~~~v~~v~~s~~g~~l  305 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-------------------TCVHTFFDHQDQVWGVKYNGNGSKI  305 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------------EEEEEEcCCCCcEEEEEECCCCCEE
Confidence            99999999999986  69999999999999999874                   233446678888888888765  99


Q ss_pred             EEecCCCeEEEEeCC
Q 009373          453 VCGGEEGIVRIWNFS  467 (536)
Q Consensus       453 ~sg~~Dg~i~vW~~~  467 (536)
                      ++++.||.|++||.+
T Consensus       306 ~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          306 VSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEETTCCEEEEECC
T ss_pred             EEEeCCCeEEEEeCC
Confidence            999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-41  Score=321.04  Aligned_cols=281  Identities=19%  Similarity=0.251  Sum_probs=240.4

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++..+..+..|..++.++  .+++++|++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            356899999999999999999999999999999999999999999999888877665  589999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc-eEeEeee-ccccEEEEe--e-
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--P-  300 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~--~-  300 (536)
                      .++.             ....+.+|.+.|.+++|  ++.+|++|+.||+|++||++++ .....+. |...|.+++  | 
T Consensus        85 ~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A           85 NTGE-------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             TTCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred             CCCc-------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence            7753             56678899999999999  6789999999999999999887 4445555 889999988  4 


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC--CCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      ++..+++++ |++|++||++++.....+..+|...+..+.|+|  ++.+|++|+.||.|++||++++      .++..+.
T Consensus       152 ~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~------~~~~~~~  225 (304)
T 2ynn_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------SCVATLE  225 (304)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT------EEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC------ccceeeC
Confidence            567888888 999999999998877777667888899999987  6789999999999999999988      6788899


Q ss_pred             CCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC----E
Q 009373          378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD----R  451 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~  451 (536)
                      +|...|.+++|+|  .+|++|+.||+|++||+++.                   .....+..|...+.++++.++    +
T Consensus       226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (304)
T 2ynn_A          226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-------------------KVEKTLNVGLERSWCIATHPTGRKNY  286 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCSSSSEEEEEECTTCGGGC
T ss_pred             CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC-------------------ceeeeccCCCccEEEEEECCCCCceE
Confidence            9999999999987  68999999999999999873                   233445667777878775543    5


Q ss_pred             EEEecCCCeEEEEeCCch
Q 009373          452 IVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       452 l~sg~~Dg~i~vW~~~~~  469 (536)
                      +++|+.|| +.+|++.+.
T Consensus       287 ~asg~~~g-~~~~~~~~~  303 (304)
T 2ynn_A          287 IASGFDNG-FTVLSLGND  303 (304)
T ss_dssp             EEEEETTE-EEEEECC--
T ss_pred             EEEecCCc-eEEEEeccC
Confidence            78877665 788887653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-40  Score=321.75  Aligned_cols=283  Identities=20%  Similarity=0.262  Sum_probs=240.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+++.||.+.|++++|+|++++|+||+.||+|++||..+++....+..|...+.  +++|++..+++|+.|+.+++|++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence            4678999999999999999999999999999999999999988888877766554  55699999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e--
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P--  300 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~--  300 (536)
                      ......       ........+.+|.+.|.+++|  ++..|++++.|++|++||+++++.+..+. |...|.++.  +  
T Consensus       136 ~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~  208 (354)
T 2pbi_B          136 TFDKNE-------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE  208 (354)
T ss_dssp             CCCTTC-------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred             eccccc-------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence            653210       112345567789999999999  66799999999999999999999998887 888888876  4  


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc--
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI--  377 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~--  377 (536)
                      ++.++++++ |+.|++||+++++.+..+. +|...|++++|+|++.+|++|+.|++|++||++..      ..+..+.  
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~------~~~~~~~~~  281 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD------REVAIYSKE  281 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCT
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEEcCC
Confidence            467888888 9999999999999998885 69999999999999999999999999999999887      3333333  


Q ss_pred             CCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEE
Q 009373          378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIV  453 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~  453 (536)
                      .+...+.+++|+|  .+|++|+.|+.|++||+.++                   .....+.+|...|.+++++++  +|+
T Consensus       282 ~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-------------------~~~~~l~~h~~~v~~l~~spdg~~l~  342 (354)
T 2pbi_B          282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-------------------SRVSILFGHENRVSTLRVSPDGTAFC  342 (354)
T ss_dssp             TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------SEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-------------------ceEEEEECCCCcEEEEEECCCCCEEE
Confidence            3445789999986  79999999999999999763                   223446788888888887665  999


Q ss_pred             EecCCCeEEEEe
Q 009373          454 CGGEEGIVRIWN  465 (536)
Q Consensus       454 sg~~Dg~i~vW~  465 (536)
                      +|+.||+|++|+
T Consensus       343 sgs~D~~v~vW~  354 (354)
T 2pbi_B          343 SGSWDHTLRVWA  354 (354)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEcCCCCEEecC
Confidence            999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-41  Score=332.91  Aligned_cols=293  Identities=18%  Similarity=0.235  Sum_probs=239.2

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEE--EEecCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..++|.||.+.|++++|+|++++|+||+.||+|+|||+.+++....+..|...|.  +++|++++|++|+.|+.|++|++
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~  137 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL  137 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence            5678999999999999999999999999999999999999999999988887765  55699999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeee------ccccEEEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR------HSDWVYGL  298 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~~~~v~~~  298 (536)
                      .+....      .........+.+|.+.|.++.|.   +..|++|+.|++|++||+.+++.+..+.      |...|.++
T Consensus       138 ~~~~~~------~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~  211 (380)
T 3iz6_a          138 SSQADR------DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL  211 (380)
T ss_dssp             CCCSSC------CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred             CCCccc------cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence            754210      01122345577999999999992   4579999999999999999999887762      77888888


Q ss_pred             e---ecCCEEEEec-CCcEEEEeCCC-CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          299 A---PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       299 ~---~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      .   +++.++++++ |+.|++||++. ++.+..+. +|.+.|++++|+|++.+|++|+.||+|++||++++      ..+
T Consensus       212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~------~~~  284 (380)
T 3iz6_a          212 SINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG------HQL  284 (380)
T ss_dssp             EECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT------EEE
T ss_pred             EeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC------cEE
Confidence            7   3778999888 99999999984 46666664 79999999999999999999999999999999988      344


Q ss_pred             eeccCC-------CCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEE
Q 009373          374 ATWIPH-------TGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLS  444 (536)
Q Consensus       374 ~~~~~h-------~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  444 (536)
                      ..+..+       ...|++++|+|  .+|++|+.||.|++||+.+......               ......+|...|.+
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~---------------~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN---------------LGTLQNSHEGRISC  349 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEE---------------ECCSCSSCCCCCCE
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEE---------------EecccCCCCCceEE
Confidence            444332       34589999986  7999999999999999876422110               00112467777777


Q ss_pred             EEecC--CEEEEecCCCeEEEEeCCchh
Q 009373          445 VDIGA--DRIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       445 ~~~~~--~~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      +++++  .+|+||+.||+|++|++....
T Consensus       350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            66654  599999999999999998653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-40  Score=317.53  Aligned_cols=303  Identities=19%  Similarity=0.249  Sum_probs=238.4

Q ss_pred             ceeeeeCccc-cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee---eeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          150 SIDVLYGHTE-AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA---SSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       150 ~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      .+.++.+|.+ .|.+++|+|+|++||+|+.|++|+|||+.++....   ...+|...|.++.  |++++|++|+.|++|+
T Consensus         7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~   86 (345)
T 3fm0_A            7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC   86 (345)
T ss_dssp             EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence            4678999998 99999999999999999999999999998876432   2367888877655  8999999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce---EeEeee-ccccEEE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK---CLKVLR-HSDWVYG  297 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~-~~~~v~~  297 (536)
                      +|++.++.           ......+.+|.+.|.+++|  ++++|++|+.|++|++||+.++.   ++..+. |...|.+
T Consensus        87 iw~~~~~~-----------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~  155 (345)
T 3fm0_A           87 IWKKNQDD-----------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH  155 (345)
T ss_dssp             EEEECCC------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEE
T ss_pred             EEEccCCC-----------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEE
Confidence            99986542           2346678899999999999  67899999999999999998764   344444 8888988


Q ss_pred             Ee--ecCCEEEEec-CCcEEEEeCCCCcE--EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc----
Q 009373          298 LA--PHDTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA----  368 (536)
Q Consensus       298 ~~--~~~~~l~~~~-d~~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~----  368 (536)
                      +.  |++.+|++++ |+.|++||.++++.  ...+ .+|...|++++|+|+|++|++|+.||+|++||........    
T Consensus       156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~  234 (345)
T 3fm0_A          156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC  234 (345)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcccee
Confidence            87  8899999988 89999999988753  3455 4799999999999999999999999999999975542211    


Q ss_pred             -----ccceeeeccC-CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          369 -----NVLLVATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       369 -----~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                           ...++..+.+ |...|++++|++  ..|++++.|+.|++|+.........+.          .........+|..
T Consensus       235 ~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~----------~~~~~~~~~~h~~  304 (345)
T 3fm0_A          235 SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT----------FSLTAHLHQAHSQ  304 (345)
T ss_dssp             C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC----------EEEEEEETTSSSS
T ss_pred             eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee----------EEEEeeecccccC
Confidence                 1123444554 889999999986  799999999999999987642211100          0001122357888


Q ss_pred             cEEEEEecCC---EEEEecCCCeEEEEeCCchhhHHH
Q 009373          441 NLLSVDIGAD---RIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       441 ~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      .|.+++++++   +||||+.||+|++|++.+++.+..
T Consensus       305 ~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             cEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            8999988764   899999999999999998765543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-39  Score=308.19  Aligned_cols=280  Identities=24%  Similarity=0.343  Sum_probs=243.9

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ...++.+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.++.  |++++|++|+.||.|++||+
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            4568899999999999999999999999999999999999999999999998887665  89999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                      .++.             ....+.+|...|.+++|  ++++|++|+.||+|++||+++++.+..+. |...|.++.  +++
T Consensus        95 ~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (312)
T 4ery_A           95 SSGK-------------CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG  161 (312)
T ss_dssp             TTCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS
T ss_pred             CCCc-------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC
Confidence            7653             56678899999999999  67899999999999999999999888887 888898887  788


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      .++++++ |+.|++||+++++.+..+...+...+..++|+|++++|++++.||.|++||++++      ..+..+.+|..
T Consensus       162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~  235 (312)
T 4ery_A          162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKN  235 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------EEEEEECSSCC
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEEecCC
Confidence            8999888 8999999999999888876667788999999999999999999999999999988      56777778876


Q ss_pred             CeEEE--EEc---CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEE
Q 009373          382 PVNSL--AFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVC  454 (536)
Q Consensus       382 ~v~~l--~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s  454 (536)
                      .+.++  .++   +.+|++|+.||.|++||+.+.                   .....+.+|...|.+++++++  ++++
T Consensus       236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s  296 (312)
T 4ery_A          236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-------------------EIVQKLQGHTDVVISTACHPTENIIAS  296 (312)
T ss_dssp             SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred             ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-------------------hhhhhhhccCCcEEEEeecCcCCceEE
Confidence            54332  332   378999999999999999873                   334456788888888887665  8888


Q ss_pred             ec--CCCeEEEEeCC
Q 009373          455 GG--EEGIVRIWNFS  467 (536)
Q Consensus       455 g~--~Dg~i~vW~~~  467 (536)
                      ++  .||+|++|+.+
T Consensus       297 ~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          297 AALENDKTIKLWKSD  311 (312)
T ss_dssp             EECTTTCCEEEEECC
T ss_pred             EEccCCccEEEecCC
Confidence            86  69999999975

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-39  Score=318.64  Aligned_cols=282  Identities=25%  Similarity=0.375  Sum_probs=235.9

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCc------------------eE--EEEecCCCEEE
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC------------------TI--RAVAADKKLLV  214 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~------------------~v--~~~~~~~~~l~  214 (536)
                      .+|.+.|.+++|+|+|++|++|+ |+++++|++.+++.+..+..+..                  .|  .+++|++++|+
T Consensus        61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            47999999999999999999987 78999999999998887765431                  24  45569999999


Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeecc
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS  292 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~  292 (536)
                      +|+.||+|++||+.++.             ....+.+|...|.+++|  +++.|++|+.|++|++||++++++...+.+.
T Consensus       140 s~~~d~~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~  206 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRK-------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE  206 (393)
T ss_dssp             EEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred             EEcCCCeEEEEECCCCc-------------EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence            99999999999997653             55678899999999999  6789999999999999999999998888888


Q ss_pred             ccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcEEEEEc------cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373          293 DWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       293 ~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~  362 (536)
                      ..+.++.  | +++++++++ |+.|++||+++++.+..+.      .+|...|++++|+|++++|++|+.||.|++||++
T Consensus       207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            8888776  5 788999988 8999999999998877763      3688999999999999999999999999999997


Q ss_pred             cCcccc------ccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee
Q 009373          363 NDCTEA------NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  434 (536)
Q Consensus       363 ~~~~~~------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (536)
                      +.....      ...+...+.+|...|.+++|++  .+|++|+.||.|++||++++                   .+...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-------------------~~~~~  347 (393)
T 1erj_A          287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------NPLLM  347 (393)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------CEEEE
T ss_pred             CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-------------------eEEEE
Confidence            653211      1234567789999999999976  79999999999999999873                   23345


Q ss_pred             eccccccEEEEEecC--------CEEEEecCCCeEEEEeCCch
Q 009373          435 LHGFECNLLSVDIGA--------DRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       435 ~~~~~~~v~~~~~~~--------~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      +.+|...|.++.+.+        ++|+||+.||+|++|++...
T Consensus       348 l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             ECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            678989999988753        48999999999999998653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.3e-39  Score=308.29  Aligned_cols=286  Identities=23%  Similarity=0.354  Sum_probs=228.4

Q ss_pred             ceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCC-----CceeeeeCCCCceEEEE--ecCCCEEEEEeCCCc
Q 009373          150 SIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLED-----GFSIASSKPLGCTIRAV--AADKKLLVAGGTDGF  221 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~  221 (536)
                      ...+|.||.+.|++++|+|++ ++|+||+.|++|++|++.+     +..+..+.+|...|.++  ++++.+|++|+.|++
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            356899999999999999965 8999999999999999864     34567788998888765  489999999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA  299 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  299 (536)
                      |++||+.++.             ....+.+|.+.|.+++|  ++.+|++|+.|++|++||++.........|...|.++.
T Consensus        89 v~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~  155 (319)
T 3frx_A           89 LRLWDVATGE-------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVR  155 (319)
T ss_dssp             EEEEETTTTE-------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEE
T ss_pred             EEEEECCCCC-------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEE
Confidence            9999997753             56678899999999999  66899999999999999997544433344888998887


Q ss_pred             --e------cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          300 --P------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       300 --~------~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                        |      ++..+++++ |+.|++||+++++....+. +|...|++++|+|++++|++|+.||.|++||+.+.      
T Consensus       156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~------  228 (319)
T 3frx_A          156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK------  228 (319)
T ss_dssp             ECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------
T ss_pred             EccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------
Confidence              3      344777777 8999999999999888885 69999999999999999999999999999999988      


Q ss_pred             ceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCC-eeeeccccccEEEEEe
Q 009373          371 LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-QRMLHGFECNLLSVDI  447 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~  447 (536)
                      ..+..+.. ...|.+++|+|  .+|++++ ++.+++|++........            .... ......+...+.++++
T Consensus       229 ~~~~~~~~-~~~v~~~~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~  294 (319)
T 3frx_A          229 KAMYTLSA-QDEVFSLAFSPNRYWLAAAT-ATGIKVFSLDPQYLVDD------------LRPEFAGYSKAAEPHAVSLAW  294 (319)
T ss_dssp             EEEEEEEC-CSCEEEEEECSSSSEEEEEE-TTEEEEEEETTEEEEEE------------ECCCCTTCCGGGCCCEEEEEE
T ss_pred             cEEEEecC-CCcEEEEEEcCCCCEEEEEc-CCCcEEEEeCcCeeeec------------cCccccccccCcCcceeEEEE
Confidence            55666654 46899999987  4666665 45699999876422111            1110 1112334455666665


Q ss_pred             c--CCEEEEecCCCeEEEEeCCch
Q 009373          448 G--ADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       448 ~--~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      +  +++|++|+.||.|++||+.++
T Consensus       295 spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          295 SADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             CCCCCEEEEeecCceEEEEEEeec
Confidence            5  559999999999999999764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.8e-39  Score=335.55  Aligned_cols=321  Identities=21%  Similarity=0.246  Sum_probs=251.4

Q ss_pred             ceeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ....+.+|.+.|++++|+|++. .|++|+.|++|++||..+++....+.+|...|.++.  |++++|++|+.|++|++||
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence            4567899999999999999987 699999999999999999999999999998887665  8999999999999999999


Q ss_pred             cccCccceecccCcccccceEEe-------eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee--------
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRL-------WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL--------  289 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------  289 (536)
                      +.++.             ....+       .+|.+.|.+++|  ++.+|++++.|++|++||+.+++++..+        
T Consensus       219 ~~~g~-------------~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          219 GVDGT-------------KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             TTTCC-------------EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG
T ss_pred             CCCCc-------------EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc
Confidence            87764             22222       279999999999  7789999999999999999987765433        


Q ss_pred             ------------------------------------eccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccc
Q 009373          290 ------------------------------------RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA  330 (536)
Q Consensus       290 ------------------------------------~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~  330 (536)
                                                          .|...|.+++  |++++|++++ |+.|++||+.+++....+..+
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~  365 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV  365 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCS
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccC
Confidence                                                1667788877  8899999998 899999999876543322100


Q ss_pred             --------------------------------------------------------------------------------
Q 009373          331 --------------------------------------------------------------------------------  330 (536)
Q Consensus       331 --------------------------------------------------------------------------------  330 (536)
                                                                                                      
T Consensus       366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~  445 (611)
T 1nr0_A          366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV  445 (611)
T ss_dssp             CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred             CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence                                                                                            


Q ss_pred             -cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEEC
Q 009373          331 -HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       331 -~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~  407 (536)
                       |...+.+++|+|+|++|++|+.|+.|++||+.+...    ..+.. .+|...|++++|+|  .+|++++.|++|++||+
T Consensus       446 ~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~----~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~  520 (611)
T 1nr0_A          446 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV----SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV  520 (611)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE----EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred             ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce----eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence             223467899999999999999999999999987521    22333 67999999999987  79999999999999999


Q ss_pred             CcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccch
Q 009373          408 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLE  485 (536)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~  485 (536)
                      .+......                .....+|...|.+++|+++  +|++|+.|++|++|++.++....  ...+.++   
T Consensus       521 ~~~~~~~~----------------~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~--~~~~~~h---  579 (611)
T 1nr0_A          521 ANNFELAH----------------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP--IIIKGAH---  579 (611)
T ss_dssp             GGTTEESC----------------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC--EEETTSS---
T ss_pred             CCCCceee----------------eeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccccc--chhhccC---
Confidence            76211100                0012347788888887765  99999999999999998764211  0001111   


Q ss_pred             hHHHhhhhccccccCCCCcceeEeecc
Q 009373          486 NRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       486 ~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                        ....+.+++|+|+|. +++++.+.+
T Consensus       580 --~~~~v~~v~fs~d~~-l~s~~~D~~  603 (611)
T 1nr0_A          580 --AMSSVNSVIWLNETT-IVSAGQDSN  603 (611)
T ss_dssp             --TTSCEEEEEEEETTE-EEEEETTSC
T ss_pred             --cccCeeEEEEcCCCE-EEEecCCCC
Confidence              134567899999998 888765443

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-39  Score=337.01  Aligned_cols=348  Identities=16%  Similarity=0.211  Sum_probs=260.6

Q ss_pred             hccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEEe--cCCCEEEEE
Q 009373          141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAG  216 (536)
Q Consensus       141 ~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg  216 (536)
                      +.+..........+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++  ....+.+|...|.+++  |+++.|+++
T Consensus        42 ~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~  121 (611)
T 1nr0_A           42 YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV  121 (611)
T ss_dssp             EEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             EEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEE
Confidence            334444445678899999999999999999999999999999999997553  4556778888876655  899999998


Q ss_pred             eCC----CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CC-EEEEEecCCeEEEEeCCCceEeEee
Q 009373          217 GTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LT-RIYSGSWDMTVRVWDRALLKCLKVL  289 (536)
Q Consensus       217 ~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~iwd~~~~~~~~~~  289 (536)
                      +.+    +.|++||...               ....+.+|.+.|.+++|.  +. .|++|+.|++|++||..++++...+
T Consensus       122 ~~~~~~~~~v~~wd~~~---------------~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l  186 (611)
T 1nr0_A          122 GEGRERFGHVFLFDTGT---------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF  186 (611)
T ss_dssp             ECCSSCSEEEEETTTCC---------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred             ECCCCceeEEEEeeCCC---------------CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee
Confidence            875    4788887422               334577999999999994  33 6999999999999999999988888


Q ss_pred             e-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc------ccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          290 R-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       290 ~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      . |...|.+++  |++++|++++ |++|++||+.+++.+..+..      +|.+.|++++|+|++++|++|+.|++|++|
T Consensus       187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            7 999999987  8899999988 99999999999998888743      699999999999999999999999999999


Q ss_pred             EcccCcccccc-------------------------------------ceeeeccCCCCCeEEEEEcC--CeEEEEeCCC
Q 009373          360 EIINDCTEANV-------------------------------------LLVATWIPHTGPVNSLAFEF--PWLVSAAGDG  400 (536)
Q Consensus       360 d~~~~~~~~~~-------------------------------------~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg  400 (536)
                      |+.++......                                     .....+.+|...|++++|+|  .+|++++.|+
T Consensus       267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~  346 (611)
T 1nr0_A          267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG  346 (611)
T ss_dssp             ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence            99876422111                                     12345678999999999986  7999999999


Q ss_pred             cEEEEECCcccccCCCC--CCCceeeE-------------------Ee------------------------eCCC----
Q 009373          401 KLSLIDVRKLLRSGRPT--SGKRVSRV-------------------IE------------------------VEPP----  431 (536)
Q Consensus       401 ~i~vwd~~~~~~~~~~~--~~~~~~~~-------------------~~------------------------~~~~----  431 (536)
                      +|++||+.++.......  ....+..+                   ..                        +.+.    
T Consensus       347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~  426 (611)
T 1nr0_A          347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA  426 (611)
T ss_dssp             CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred             cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence            99999998754322110  00000000                   00                        0000    


Q ss_pred             ---------------eeeeccccccEEEEE--ecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhc
Q 009373          432 ---------------QRMLHGFECNLLSVD--IGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQ  494 (536)
Q Consensus       432 ---------------~~~~~~~~~~v~~~~--~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (536)
                                     ...+ .|...+.+++  +++++|++|+.||+|++||+.++....        ... ......+.+
T Consensus       427 ~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~--------~~~-~~h~~~v~~  496 (611)
T 1nr0_A          427 VAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE--------VKT-IVHPAEITS  496 (611)
T ss_dssp             EEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE--------EEE-EECSSCEEE
T ss_pred             EEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee--------eec-cCCCCceEE
Confidence                           0000 1223344555  455699999999999999997653210        000 112345789


Q ss_pred             cccccCCCCcceeEeeccc
Q 009373          495 TEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       495 ~~~~~~g~~~~~~~~~~~~  513 (536)
                      ++|+|+|..+++++.+.+.
T Consensus       497 v~fspdg~~las~s~d~~v  515 (611)
T 1nr0_A          497 VAFSNNGAFLVATDQSRKV  515 (611)
T ss_dssp             EEECTTSSEEEEEETTSCE
T ss_pred             EEECCCCCEEEEEcCCCCE
Confidence            9999999999998765443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=311.73  Aligned_cols=280  Identities=18%  Similarity=0.195  Sum_probs=221.5

Q ss_pred             eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-----------ceeeeeCCCCceEEEEe--cCCCEEEEEeCCC
Q 009373          154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-----------FSIASSKPLGCTIRAVA--ADKKLLVAGGTDG  220 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-----------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg  220 (536)
                      ...|...|.+++|+|||++|++++ |+++++||....           ........+...|.++.  ++ +.|++|+.||
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg  103 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSG  103 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTS
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCC
Confidence            346778899999999999999888 778888873211           01111112334455554  65 5788999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEE
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG  297 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~  297 (536)
                      +|++||+.++...         ........+|.+.|++++|  ++++|++|+.|++|++||+.+++++..+. |...|.+
T Consensus       104 ~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~  174 (344)
T 4gqb_B          104 AVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC  174 (344)
T ss_dssp             EEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence            9999999876421         1223446689999999999  78899999999999999999999999988 9999999


Q ss_pred             Ee--ecC-CEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccc
Q 009373          298 LA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       298 ~~--~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                      +.  +++ .++++++ |++|++||+++++....+.. .+...+.+++|+|+ +.+|++|+.||.|++||++++      .
T Consensus       175 ~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~  248 (344)
T 4gqb_B          175 VAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------S  248 (344)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--------
T ss_pred             EEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC------c
Confidence            88  555 4777777 89999999999998887642 35567999999995 568899999999999999988      6


Q ss_pred             eeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec
Q 009373          372 LVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG  448 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  448 (536)
                      ++..+.+|...|++++|+|   .+|++|+.|++|+|||+++.+                    ...+.+|...|.+++|+
T Consensus       249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~--------------------~~~~~~H~~~V~~v~~s  308 (344)
T 4gqb_B          249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE--------------------LFRSQAHRDFVRDATWS  308 (344)
T ss_dssp             CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE--------------------EEEECCCSSCEEEEEEC
T ss_pred             EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc--------------------EEEEcCCCCCEEEEEEe
Confidence            7888999999999999986   479999999999999987631                    12356888999999986


Q ss_pred             CC---EEEEecCCCeEEEEeCCchh
Q 009373          449 AD---RIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       449 ~~---~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      ++   +|+|||.||+|++|++++..
T Consensus       309 p~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          309 PLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             SSSTTEEEEEETTSCEEEEECCC--
T ss_pred             CCCCeEEEEEcCCCeEEEEECCCCC
Confidence            53   68899999999999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.4e-38  Score=307.32  Aligned_cols=292  Identities=19%  Similarity=0.301  Sum_probs=226.6

Q ss_pred             ceeeeeCccccEEEEEE-----ec-CCCEEEEEeCCCcEEEEECCCC-------ceeeeeCCCCceEEEEe--cCCCEEE
Q 009373          150 SIDVLYGHTEAVLTVFV-----LA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADKKLLV  214 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~-----~~-~~~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~--~~~~~l~  214 (536)
                      ...+|.||.+.|++++|     ++ ++++|+||+.|++|++||+.++       .....+.+|...|.++.  +++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            46789999999999999     66 8999999999999999999753       45677889998887665  8899999


Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee---
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL---  289 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~---  289 (536)
                      +|+.|++|++||+.++.             ....+.+|.+.|.+++|  ++++|++++.|++|++||+.........   
T Consensus        93 s~s~D~~v~lwd~~~~~-------------~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGT-------------TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             EEETTSEEEEEETTSSC-------------EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTT
T ss_pred             EEcCCCcEEEEECCCCc-------------EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeeccc
Confidence            99999999999997753             56678899999999999  6789999999999999999854433333   


Q ss_pred             eccccEEEEe--ecC----------CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373          290 RHSDWVYGLA--PHD----------TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  356 (536)
Q Consensus       290 ~~~~~v~~~~--~~~----------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i  356 (536)
                      .|...|.++.  |++          .++++++ |+.|++||. ..+....+. +|...|++++|+|+|++|++|+.||.|
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs~dg~v  237 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHESNVNHLSISPNGKYIATGGKDKKL  237 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc-CccccceEEEECCCCCEEEEEcCCCeE
Confidence            3777888887  443          6788887 999999994 455666664 699999999999999999999999999


Q ss_pred             EEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccC--CCCCCCceeeEEeeCCCee
Q 009373          357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSG--RPTSGKRVSRVIEVEPPQR  433 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~  433 (536)
                      ++||+....     .....+ .+...|.+++|+| ..+++++.|+.|++||+.+.....  ......        .....
T Consensus       238 ~iwd~~~~~-----~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~--------~~~~~  303 (343)
T 2xzm_R          238 LIWDILNLT-----YPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP--------ITKAE  303 (343)
T ss_dssp             EEEESSCCS-----SCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCS--------GGGBT
T ss_pred             EEEECCCCc-----ccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCc--------chhhh
Confidence            999995442     122222 3456799999987 345556678899999998743221  000000        00001


Q ss_pred             eeccccccEEEEEecC--CEEEEecCCCeEEEEeCCchh
Q 009373          434 MLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       434 ~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      ...+|...+.++++++  ++|++|+.||.|++|+++++.
T Consensus       304 ~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             TBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             hhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            1235667777777665  599999999999999998764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-39  Score=314.54  Aligned_cols=286  Identities=20%  Similarity=0.240  Sum_probs=221.2

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeC------CCcEEEEECCCCceeee----eCCCCceEEEEe--cCCCEEEEEeC
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGY------DSIVRMWHLEDGFSIAS----SKPLGCTIRAVA--ADKKLLVAGGT  218 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~------dg~v~iwd~~~~~~~~~----~~~~~~~v~~~~--~~~~~l~sg~~  218 (536)
                      .....+|...|++++|+|||++|++|+.      |+.|++|+..++.....    ...|...|.++.  |++ .+++++.
T Consensus        35 ~~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~  113 (357)
T 4g56_B           35 VTAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASD  113 (357)
T ss_dssp             -----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEET
T ss_pred             CCCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEEC
Confidence            3445689999999999999999999997      78899999887754332    345666676655  665 5667889


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccE
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV  295 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v  295 (536)
                      ||+|++||+.++...         ........+|.+.|.+++|  ++++|++|+.|++|++||+++++.+..+. |...|
T Consensus       114 dg~v~lWd~~~~~~~---------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          114 SGAVELWEILEKESL---------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             TSCEEEC-----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCEEEEeecccccee---------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            999999999876421         1233445689999999999  77899999999999999999999999887 89999


Q ss_pred             EEEe--ecC-CEEEEec-CCcEEEEeCCCCcEEEEEc-cccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccc
Q 009373          296 YGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       296 ~~~~--~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                      .+++  +++ .++++++ |+.|++||+++++....+. ..+...+++++|+|++ .+|++|+.|+.|++||++++     
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----  259 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----  259 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-----
Confidence            9987  454 3566666 8999999999988776553 2467789999999975 68899999999999999988     


Q ss_pred             cceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE
Q 009373          370 VLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD  446 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  446 (536)
                       ..+..+.+|...|++++|+|   .+|++|+.||+|+|||+++.+.                   . ...+|...|.+++
T Consensus       260 -~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~-------------------~-~~~~H~~~V~~va  318 (357)
T 4g56_B          260 -DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV-------------------F-RDLSHRDFVTGVA  318 (357)
T ss_dssp             -GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE-------------------E-EECCCSSCEEEEE
T ss_pred             -cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE-------------------e-EECCCCCCEEEEE
Confidence             67788899999999999986   5799999999999999987421                   1 1236888899998


Q ss_pred             ecC---CEEEEecCCCeEEEEeCCchhhH
Q 009373          447 IGA---DRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       447 ~~~---~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      |++   .+|+|||.||+|++|++.+....
T Consensus       319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~~~  347 (357)
T 4g56_B          319 WSPLDHSKFTTVGWDHKVLHHHLPSEGRT  347 (357)
T ss_dssp             ECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred             EeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence            864   49999999999999999875443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-38  Score=303.62  Aligned_cols=295  Identities=22%  Similarity=0.296  Sum_probs=224.3

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeee-CC-CCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASS-KP-LGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~-~~-~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      .++++.+|.++|++++|+|+  +|++|+.|++|++||+.++  .....+ .+ |...|.++.  |++++|++|+.|++|+
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~   83 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS   83 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            57789999999999999987  9999999999999999875  345555 34 888776654  8999999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC----ceEeEeee-ccccEE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL----LKCLKVLR-HSDWVY  296 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~----~~~~~~~~-~~~~v~  296 (536)
                      +||+......      .........+.+|.+.|.+++|  ++++|++|+.|++|++||+..    .+++..+. |...|.
T Consensus        84 iw~~~~~~~~------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~  157 (330)
T 2hes_X           84 IWAKEESADR------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK  157 (330)
T ss_dssp             EEEC-------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred             EEEcccCcCc------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence            9998543110      0112345667899999999999  678999999999999999943    24555665 889999


Q ss_pred             EEe--ecCCEEEEec-CCcEEEEeCCCC--cEEEEEccccccceEEEEEeCC--CCEEEEEcCCCcEEEEEcccCccc--
Q 009373          297 GLA--PHDTTVASTS-GSDVYIWDTNSG--CLLTVVNGAHVGNTKSLARSHT--GDFLFTGGEDGAIHMYEIINDCTE--  367 (536)
Q Consensus       297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~--  367 (536)
                      ++.  |++.+|++++ |++|++||..++  +++..+. +|.+.|.+++|+|+  +.+|++|+.|++|++||+......  
T Consensus       158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence            987  8899999998 999999999876  5666664 79999999999998  678999999999999999765211  


Q ss_pred             cccceeeeccC-CCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc-cEEE
Q 009373          368 ANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC-NLLS  444 (536)
Q Consensus       368 ~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~  444 (536)
                      ........+.+ |...|.+++|++ .+|++++.||.|++||..++..                ........+|.. .+.+
T Consensus       237 ~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~----------------~~~~~~~~~h~~~~v~~  300 (330)
T 2hes_X          237 QEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW----------------KVFAKRALCHGVYEINV  300 (330)
T ss_dssp             EEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEE----------------EEEEEESCTTTTSCEEE
T ss_pred             ceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCce----------------EEEeccccccccceEEE
Confidence            11123444554 999999999986 6899999999999999865310                000112245655 6777


Q ss_pred             EEecC----CEEEEecCCCeEEEEeCCch
Q 009373          445 VDIGA----DRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       445 ~~~~~----~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      +++++    .+|+||+.||+|++|++.+.
T Consensus       301 v~~~~~~~~~~las~s~Dg~v~~W~~~~~  329 (330)
T 2hes_X          301 VKWLELNGKTILATGGDDGIVNFWSLEKA  329 (330)
T ss_dssp             EEEC-----CCEEEEETTSEEEEEEC---
T ss_pred             EEEecCCCceEEEEecCCCcEEEEEeccC
Confidence            77654    58999999999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.4e-38  Score=302.29  Aligned_cols=289  Identities=21%  Similarity=0.325  Sum_probs=230.5

Q ss_pred             eeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc-----eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcE
Q 009373          151 IDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGF-----SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFI  222 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~-----~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i  222 (536)
                      ..+|+||++.|++|+|+|+ +++|+|||.|++|+|||+.+++     +...+.+|...|.++.  |++++|++|+.|+.|
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            4589999999999999997 6899999999999999987653     4667888988887665  899999999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEE
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGL  298 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~  298 (536)
                      ++|+.....             .......+...+....+  ++..|++|+.|+.+++||...........  |...+..+
T Consensus       111 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~  177 (340)
T 4aow_A          111 RLWDLTTGT-------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV  177 (340)
T ss_dssp             EEEETTTTE-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred             eEEeecccc-------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence            999986642             44455667777888877  67899999999999999998765544332  77788777


Q ss_pred             e--e--cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          299 A--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       299 ~--~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      .  +  ...++++++ |+.|++||+++++.+..+. +|.+.|++++|+|++++|++|+.||.|++||+++.      ..+
T Consensus       178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~------~~~  250 (340)
T 4aow_A          178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG------KHL  250 (340)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT------EEE
T ss_pred             EEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC------cee
Confidence            6  3  345667766 8999999999999998885 69999999999999999999999999999999988      555


Q ss_pred             eeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--
Q 009373          374 ATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--  450 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--  450 (536)
                      ..+.. ...|.++.|+| ..+++++.|+.|++||+++........          .........+|...|.+++++++  
T Consensus       251 ~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~s~dg~  319 (340)
T 4aow_A          251 YTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK----------QEVISTSSKAEPPQCTSLAWSADGQ  319 (340)
T ss_dssp             EEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEC----------CC-------CCCCCEEEEEECTTSS
T ss_pred             eeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecc----------ccceeeeccCCCCCEEEEEECCCCC
Confidence            55554 46899999987 688888999999999998643221111          01122234577888888887654  


Q ss_pred             EEEEecCCCeEEEEeCCchh
Q 009373          451 RIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       451 ~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      +|++|+.||.|+|||+.+|.
T Consensus       320 ~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          320 TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEeCCCEEEEEeCCCcC
Confidence            99999999999999999885

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-37  Score=293.02  Aligned_cols=288  Identities=20%  Similarity=0.320  Sum_probs=245.1

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      .+....+++.+|.+.|++++| |++++|++|+.||.|++||+.+++....+..|...+.++.  |++.+|++|+.||.|+
T Consensus         6 ~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            6 TGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             CCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            344567899999999999999 9999999999999999999999988888888888776654  8999999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  300 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~  300 (536)
                      +|++....          .......+.+|...|.+++|+++.+++++.||.|++||  .++....+. |...+.++.  +
T Consensus        85 ~~~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~  152 (313)
T 3odt_A           85 GVPLFATS----------GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVS  152 (313)
T ss_dssp             EEETTCCT----------TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEE
T ss_pred             EEEeeecC----------CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEcc
Confidence            99986642          22345667889999999999999999999999999999  566666666 888888877  4


Q ss_pred             -cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          301 -HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       301 -~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                       ++..+++++ ++.|++||  .++....+...|...+.+++|+|++. +++|+.||.|++||++++      ..+..+.+
T Consensus       153 ~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~------~~~~~~~~  223 (313)
T 3odt_A          153 FSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG------DVLRTYEG  223 (313)
T ss_dssp             TTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC------CEEEEEEC
T ss_pred             CCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch------hhhhhhhc
Confidence             788888888 89999999  55666677655999999999999988 999999999999999988      67788889


Q ss_pred             CCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEec
Q 009373          379 HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGG  456 (536)
Q Consensus       379 h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~  456 (536)
                      |...|++++|+| ..|++++.||.|++||+++.                   .....+..|...+.++.++++ .+++++
T Consensus       224 ~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~  284 (313)
T 3odt_A          224 HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------------------SLKQVITLPAISIWSVDCMSNGDIIVGS  284 (313)
T ss_dssp             CSSCEEEEEECTTSCEEEEETTSEEEEECTTTC-------------------CEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred             CCceEEEEEEecCCCEEEEecCCEEEEEECCCC-------------------ceeEEEeccCceEEEEEEccCCCEEEEe
Confidence            999999999987 48999999999999999874                   233445667778888887766 577899


Q ss_pred             CCCeEEEEeCCchhhHHH
Q 009373          457 EEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       457 ~Dg~i~vW~~~~~~~~~~  474 (536)
                      .||.|++|++.++.....
T Consensus       285 ~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          285 SDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             TTSCEEEEESCGGGCCC-
T ss_pred             CCCcEEEEeCCCCceeeh
Confidence            999999999998765543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.5e-37  Score=307.39  Aligned_cols=249  Identities=23%  Similarity=0.320  Sum_probs=222.3

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEe
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGG  217 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~  217 (536)
                      ++.+........+++.+|.+.|++++|+|++++|++|+.|++|++||+.+++++..+.+|...|.++.  |++++|++|+
T Consensus       132 i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s  211 (410)
T 1vyh_C          132 IKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS  211 (410)
T ss_dssp             EEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence            34444444456789999999999999999999999999999999999999999999999998887765  8899999999


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-cccc
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW  294 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~  294 (536)
                      .|++|++||+.++.             ....+.+|...|.++.+  ++.+|++|+.|++|++||+.++++...+. |...
T Consensus       212 ~D~~i~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~  278 (410)
T 1vyh_C          212 RDKTIKMWEVQTGY-------------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV  278 (410)
T ss_dssp             TTSEEEEEETTTCC-------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred             CCCeEEEEECCCCc-------------EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce
Confidence            99999999997753             56678899999999999  67899999999999999999999888886 8888


Q ss_pred             EEEEe--ec--------------------CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373          295 VYGLA--PH--------------------DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       295 v~~~~--~~--------------------~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                      |.++.  |+                    +.++++++ |+.|++||+++++++..+. +|...|++++|+|++.+|++|+
T Consensus       279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEe
Confidence            99887  43                    56888888 8999999999999998886 6999999999999999999999


Q ss_pred             CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          352 EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       352 ~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      .||.|++||+.++      .++..+.+|...|++++|+|  .+|++|+.||+|++|+++
T Consensus       358 ~D~~i~vwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          358 DDKTLRVWDYKNK------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             TTTEEEEECCTTS------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCeEEEEECCCC------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            9999999999887      67788899999999999987  589999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.4e-36  Score=301.61  Aligned_cols=292  Identities=21%  Similarity=0.387  Sum_probs=253.1

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCC
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD  219 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d  219 (536)
                      ++.+.......+..+.+|.+.|.+++|+  ++++++|+.||+|++||+.+++.+..+.+|...+.++.++++.+++|+.|
T Consensus       141 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~d  218 (445)
T 2ovr_B          141 LKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD  218 (445)
T ss_dssp             EEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCC
Confidence            4445544555678999999999999997  67999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEE
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL  298 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  298 (536)
                      |+|++||+.++.             ....+.+|...|.+++++++.+++|+.||.|++||+++++.+..+. |...|.++
T Consensus       219 g~i~~wd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  285 (445)
T 2ovr_B          219 ATLRVWDIETGQ-------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL  285 (445)
T ss_dssp             SEEEEEESSSCC-------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE
T ss_pred             CEEEEEECCCCc-------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEE
Confidence            999999997653             5667789999999999999999999999999999999999998887 88999999


Q ss_pred             eecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          299 APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       299 ~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      ..++..+++++ |+.|++||+++++.+..+. +|...+.++.++  ++++++|+.||.|++||++++      ..+..+.
T Consensus       286 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~------~~~~~~~  356 (445)
T 2ovr_B          286 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG------QCLQTLQ  356 (445)
T ss_dssp             EECSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC------CEEEEEC
T ss_pred             EECCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC------cEEEEEc
Confidence            99999999988 9999999999999998885 688899888774  679999999999999999887      4556665


Q ss_pred             C---CCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EE
Q 009373          378 P---HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RI  452 (536)
Q Consensus       378 ~---h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l  452 (536)
                      +   |...|++++|++++|++|+.||.|++||+.++....         .+...     ...++...+.++.++++  ++
T Consensus       357 ~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~---------~~~~~-----~~~~~~~~v~~~~~s~~~~~l  422 (445)
T 2ovr_B          357 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR---------NLVTL-----ESGGSGGVVWRIRASNTKLVC  422 (445)
T ss_dssp             STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---------EEEEC-----TTGGGTCEEEEEEECSSEEEE
T ss_pred             cCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee---------eeecc-----ccCCCCceEEEEEecCCEEEE
Confidence            5   899999999999999999999999999998743221         11000     01457778888888776  88


Q ss_pred             EEecCCCe----EEEEeCCch
Q 009373          453 VCGGEEGI----VRIWNFSQA  469 (536)
Q Consensus       453 ~sg~~Dg~----i~vW~~~~~  469 (536)
                      ++|+.||+    |.+||+...
T Consensus       423 a~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          423 AVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEECSSSSSCCEEEEEECCCC
T ss_pred             EEcccCCCCccEEEEEECCCC
Confidence            99999998    999999864

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.9e-36  Score=313.95  Aligned_cols=306  Identities=23%  Similarity=0.347  Sum_probs=256.7

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      .+..+.+|...|.+++|+|+++.|++++.|++|++||. +++.+..+.+|...+.++.  |++..|++++.||+|++||.
T Consensus       254 ~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~  332 (577)
T 2ymu_A          254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR  332 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            46788999999999999999999999999999999996 5678888899998887654  89999999999999999997


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                      ...              ....+.+|...|.+++|  ++..+++++.||.|++||. +++.+..+. |...|.+++  |++
T Consensus       333 ~~~--------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg  397 (577)
T 2ymu_A          333 NGQ--------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG  397 (577)
T ss_dssp             TSC--------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS
T ss_pred             CCC--------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC
Confidence            543              44567789999999999  6789999999999999996 556666666 888999887  889


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      +++++++ |+.|++||. +++.+..+. +|...|++++|+|++++|++++.|+.|++||...       ..+..+.+|..
T Consensus       398 ~~l~~~~~d~~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-------~~~~~~~~~~~  468 (577)
T 2ymu_A          398 QTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-------QLLQTLTGHSS  468 (577)
T ss_dssp             SCEEEEETTSEEEEECT-TCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-------CEEEEEECCSS
T ss_pred             CEEEEEeCCCEEEEEeC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-------CEEEEEcCCCC
Confidence            9999888 899999995 566777775 6999999999999999999999999999999643       46677889999


Q ss_pred             CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecC
Q 009373          382 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGE  457 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~  457 (536)
                      .|++++|+|  .+|++++.|+.|++||...                    .....+.+|...|.+++++++  +|++|+.
T Consensus       469 ~v~~~~~spd~~~las~~~d~~i~iw~~~~--------------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  528 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVRGVAFSPDGQTIASASD  528 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTS--------------------CEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--------------------CEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence            999999986  7999999999999999542                    223456778888888887654  9999999


Q ss_pred             CCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373          458 EGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       458 Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      ||.|++||.. ++.+..    +.      .....+.+++|+|||+.+++++.+.
T Consensus       529 dg~v~lwd~~-~~~~~~----~~------~h~~~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          529 DKTVKLWNRN-GQLLQT----LT------GHSSSVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             TSEEEEECTT-SCEEEE----EE------CCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             cCEEEEEeCC-CCEEEE----Ec------CCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            9999999964 433221    11      1234567899999999999877644

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-37  Score=303.74  Aligned_cols=320  Identities=13%  Similarity=0.146  Sum_probs=245.6

Q ss_pred             eeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEEC----CCCc------eeeeeCC----------CCceEEEE--ec
Q 009373          152 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHL----EDGF------SIASSKP----------LGCTIRAV--AA  208 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~----~~~~------~~~~~~~----------~~~~v~~~--~~  208 (536)
                      .....|.+.|++++|+|+++ +|++|+.||.|++|++    .+++      ....+..          |...|.++  +|
T Consensus        39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  118 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH  118 (425)
T ss_dssp             CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT
T ss_pred             eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC
Confidence            33445669999999999999 9999999999999999    8887      3444433          55566655  58


Q ss_pred             CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEe
Q 009373          209 DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL  286 (536)
Q Consensus       209 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~  286 (536)
                      ++++|++|+.||.|++||. ++             .....+.+|...|.+++|  ++++|++++.||.|++||+.+++.+
T Consensus       119 ~~~~l~~~~~dg~i~i~~~-~~-------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          119 DGNSIVTGVENGELRLWNK-TG-------------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             TSSEEEEEETTSCEEEEET-TS-------------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred             CCCEEEEEeCCCeEEEEeC-CC-------------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence            9999999999999999993 22             256667889999999999  6789999999999999999999988


Q ss_pred             Eeee-cccc---------------EEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373          287 KVLR-HSDW---------------VYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       287 ~~~~-~~~~---------------v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      ..+. +...               +.++.  +++.+++++.++.|++||+.+++.+..+. +|...|.+++|+|++++|+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEE
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEE
Confidence            8876 3333               55555  55554444449999999999999888885 6999999999999999999


Q ss_pred             EEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC-eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          349 TGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       349 tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      +++.||.|++||+++.      ..+..+.+|...|.+++|+|+ ++++++.||.|++||+++..                
T Consensus       264 ~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------------  321 (425)
T 1r5m_A          264 SASDDGTLRIWHGGNG------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNT----------------  321 (425)
T ss_dssp             EEETTSCEEEECSSSB------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTE----------------
T ss_pred             EEcCCCEEEEEECCCC------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCc----------------
Confidence            9999999999999887      567777889999999999874 99999999999999998742                


Q ss_pred             eCCCeeeeccccccEEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhh----------cccchhHHHh--hhh
Q 009373          428 VEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALR----------GIRLENRMRR--RKL  493 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~  493 (536)
                         ....+..|...+.++.+++  ++|++|+.||.|++||+.++...........          ..........  .+.
T Consensus       322 ---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  398 (425)
T 1r5m_A          322 ---LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF  398 (425)
T ss_dssp             ---EEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred             ---EeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence               2233455666777777664  5999999999999999988762211111000          1111111222  678


Q ss_pred             ccccccCCCCcceeEeec
Q 009373          494 QTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       494 ~~~~~~~g~~~~~~~~~~  511 (536)
                      .++|+|+|+.+++++.+.
T Consensus       399 ~~~~s~~~~~l~~~~~dg  416 (425)
T 1r5m_A          399 DLSWNCAGNKISVAYSLQ  416 (425)
T ss_dssp             EEEECTTSSEEEEEESSS
T ss_pred             EEEccCCCceEEEEecCc
Confidence            899999999998877543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.5e-36  Score=287.24  Aligned_cols=238  Identities=21%  Similarity=0.279  Sum_probs=217.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ...+.||...|.+++|+|++.++++|+.|++|++||+.+++.+..+..+...+  .+++|++++|++|+.||.|++|+++
T Consensus        73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~  152 (321)
T 3ow8_A           73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE  152 (321)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred             eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence            45789999999999999999999999999999999999999999887776655  5667999999999999999999997


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      ++.             ....+..|...|.+++|  ++++|++|+.||.|++||+.+++.+..+. |...|.+++  |+++
T Consensus       153 ~~~-------------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~  219 (321)
T 3ow8_A          153 SGK-------------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ  219 (321)
T ss_dssp             TCS-------------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC
T ss_pred             CCc-------------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC
Confidence            753             45567788999999999  77899999999999999999999998887 888888877  8899


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      +|++++ |+.|++||+++++....+. +|...|.+++|+|++.+|++|+.||+|++||+.++      .++.++.+|...
T Consensus       220 ~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~h~~~  292 (321)
T 3ow8_A          220 LLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR------TCVHTFFDHQDQ  292 (321)
T ss_dssp             EEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSC
T ss_pred             EEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------EEEEEEcCCCCc
Confidence            999998 8999999999999988885 69999999999999999999999999999999988      778889999999


Q ss_pred             eEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          383 VNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       383 v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      |.+++|+|  .+|++++.||.|++||..
T Consensus       293 v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          293 VWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999986  699999999999999963

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8.4e-36  Score=315.48  Aligned_cols=297  Identities=18%  Similarity=0.321  Sum_probs=225.8

Q ss_pred             ceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCC-----ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009373          150 SIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG-----FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF  221 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~  221 (536)
                      ....+.+|++.|++++|+|++ ++|+||+.|++|++|++.+.     .....+.+|...|.++.  +++++|++|+.||+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            346789999999999999874 79999999999999999764     34567788988887654  89999999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee----eccccE
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWV  295 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~~~~~v  295 (536)
                      |++||+.++.             ....+.+|.+.|.+++|  +++.|++|+.|++|++||..........    .|...|
T Consensus       454 v~vwd~~~~~-------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v  520 (694)
T 3dm0_A          454 LRLWDLAAGV-------------STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWV  520 (694)
T ss_dssp             EEEEETTTTE-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred             EEEEECCCCc-------------ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence            9999997653             55678899999999999  6789999999999999998765443332    277889


Q ss_pred             EEEe--ecC--CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          296 YGLA--PHD--TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       296 ~~~~--~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                      .++.  +++  ..+++++ |+.|++||+++++....+. +|.+.|++++|+|++++|++|+.||.|++||++++      
T Consensus       521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~------  593 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG------  593 (694)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT------
T ss_pred             EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------
Confidence            9887  444  4677777 9999999999999888885 69999999999999999999999999999999988      


Q ss_pred             ceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--
Q 009373          371 LLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--  447 (536)
Q Consensus       371 ~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--  447 (536)
                      ..+..+. +...|.+++|+| ..+++++.|+.|++||+++............................+...+.++.+  
T Consensus       594 ~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp  672 (694)
T 3dm0_A          594 KKLYSLE-ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA  672 (694)
T ss_dssp             EEEECCB-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred             ceEEEec-CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence            4555554 456899999987 455566667789999998754332211110000000000000001122233555555  


Q ss_pred             cCCEEEEecCCCeEEEEeCC
Q 009373          448 GADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       448 ~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      ++.+|++|+.||+|++|++.
T Consensus       673 dg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          673 DGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TSSEEEEEETTSEEEEEEC-
T ss_pred             CCCEEEEEcCCCeEEEEecc
Confidence            55699999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=291.75  Aligned_cols=307  Identities=15%  Similarity=0.188  Sum_probs=233.9

Q ss_pred             ceeeeeCccccEEEEEEecCCC-EEEEEeC---CCcEEEEECCCCceeeee-CCCCceEEEEe--cC---CCEEEEEeCC
Q 009373          150 SIDVLYGHTEAVLTVFVLASAK-LLFTSGY---DSIVRMWHLEDGFSIASS-KPLGCTIRAVA--AD---KKLLVAGGTD  219 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~---dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~--~~---~~~l~sg~~d  219 (536)
                      ....+.+|.+.|++++|+|++. ++++|+.   ||.|++||+.+++..... .+|...|.++.  ++   +.+|++|+.|
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            3456788999999999999986 5556665   999999999998765443 36777777766  66   6999999999


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--------eCCEEEEEecCCeEEEEeCCCce-EeEeee
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--------DLTRIYSGSWDMTVRVWDRALLK-CLKVLR  290 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--------~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~  290 (536)
                      |.|++||+.++.            .....+.+|.+.|.++.|        +++.|++++.||.|++||+.+++ ....+.
T Consensus        90 g~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~  157 (357)
T 3i2n_A           90 GNLHIWNLEAPE------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME  157 (357)
T ss_dssp             SCEEEECTTSCS------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC
T ss_pred             CeEEEEeCCCCC------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc
Confidence            999999997652            245667899999999965        46799999999999999999886 566664


Q ss_pred             -c----cccEEEEe------ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC---CCCEEEEEcCCCc
Q 009373          291 -H----SDWVYGLA------PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH---TGDFLFTGGEDGA  355 (536)
Q Consensus       291 -~----~~~v~~~~------~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~tg~~dg~  355 (536)
                       +    ...+.++.      +++.++++++ ++.|++||+++++.....  .|...|.+++|+|   ++.+|++|+.||.
T Consensus       158 ~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~  235 (357)
T 3i2n_A          158 PVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGK  235 (357)
T ss_dssp             CCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTE
T ss_pred             ccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCe
Confidence             2    33777776      7899999988 799999999999886654  5889999999999   9999999999999


Q ss_pred             EEEEEcccCccccccceeeeccCCCCCeEEEEEcCC---eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373          356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  432 (536)
Q Consensus       356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (536)
                      |++||+++....... ....+.+|...|++++|+|.   +|++++.||.|++||+++.......................
T Consensus       236 i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~  314 (357)
T 3i2n_A          236 FHVFDMRTQHPTKGF-ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLL  314 (357)
T ss_dssp             EEEEEEEEEETTTEE-EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEE
T ss_pred             EEEEeCcCCCcccce-eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccccee
Confidence            999999887322111 11234589999999999883   79999999999999998754432221111100000001233


Q ss_pred             eeeccccccEEEEEecCC--EEE-EecCCCeEEEEeCCchhh
Q 009373          433 RMLHGFECNLLSVDIGAD--RIV-CGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       433 ~~~~~~~~~v~~~~~~~~--~l~-sg~~Dg~i~vW~~~~~~~  471 (536)
                      ..+.+|...|.+++++++  +|+ +|+.||.|++||+.+...
T Consensus       315 ~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          315 QNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             eccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            456778888888887765  676 899999999999987643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.9e-36  Score=309.29  Aligned_cols=310  Identities=22%  Similarity=0.351  Sum_probs=256.7

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ..+..+.+|...|.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...+.++.  |++..+++++.|+.|++|+
T Consensus       212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~  290 (577)
T 2ymu_A          212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN  290 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence            356788999999999999999999999999999999995 5778888999998887665  8999999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecC
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD  302 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~  302 (536)
                      ...              .....+.+|...|.+++|  ++..+++++.|++|++||...........|...+.+++  |++
T Consensus       291 ~~~--------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g  356 (577)
T 2ymu_A          291 RNG--------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG  356 (577)
T ss_dssp             TTS--------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS
T ss_pred             CCC--------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC
Confidence            643              245567899999999999  67899999999999999987665544444888888877  889


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      +++++++ ++.|++||. +++.+..+. +|...|++++|+|++++|++++.|+.|++||.. +      ..+..+.+|..
T Consensus       357 ~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~------~~~~~~~~~~~  427 (577)
T 2ymu_A          357 QTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G------QLLQTLTGHSS  427 (577)
T ss_dssp             SEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-C------CEEEEEECCSS
T ss_pred             CEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-C------CEEEEecCCCC
Confidence            9999988 899999995 566777775 699999999999999999999999999999953 3      45777889999


Q ss_pred             CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecC
Q 009373          382 PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGE  457 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~  457 (536)
                      .|++++|+|  .+|++++.|+.|++||...                    .....+.+|...+.+++++++  +|++++.
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--------------------~~~~~~~~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLWNRNG--------------------QLLQTLTGHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTS--------------------CEEEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEEECCC--------------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence            999999987  6999999999999999643                    223345678888888777654  9999999


Q ss_pred             CCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373          458 EGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       458 Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  513 (536)
                      |+.|++||.. +..+..    +.+      ....+.+++|+|+|+.+++++.+...
T Consensus       488 d~~i~iw~~~-~~~~~~----~~~------h~~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          488 DKTVKLWNRN-GQLLQT----LTG------HSSSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             TSEEEEEETT-SCEEEE----EEC------CSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             CCEEEEEcCC-CCEEEE----EeC------CCCCEEEEEEcCCCCEEEEEECcCEE
Confidence            9999999964 333221    111      23456789999999999988765443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.6e-36  Score=296.66  Aligned_cols=300  Identities=17%  Similarity=0.117  Sum_probs=235.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc------eeeeeCCCCceEEEEe--cC----C---CEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF------SIASSKPLGCTIRAVA--AD----K---KLLV  214 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~------~~~~~~~~~~~v~~~~--~~----~---~~l~  214 (536)
                      ....+.+|.+.|++++|+|  ++|++|+.||+|++||+.+++      .+..+.+|...|.++.  ++    +   .+|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            3567889999999999998  899999999999999999987      7888888988887765  77    8   9999


Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEeeCC-----ccCEEEEEEe------CCE-EEEEecCCeEEEEeCCC
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-----EGPITSLALD------LTR-IYSGSWDMTVRVWDRAL  282 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~~------~~~-l~s~s~dg~i~iwd~~~  282 (536)
                      +++.||.|++|++.++..        ........+..|     ...|.+++|.      ++. |++++.||.|++||+.+
T Consensus        86 s~~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EEETTSCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             EEcCCCCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            999999999999977531        001115667778     5899999997      578 99999999999999988


Q ss_pred             ------ceEeE-----eee--------ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccc---c---ccc
Q 009373          283 ------LKCLK-----VLR--------HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA---H---VGN  334 (536)
Q Consensus       283 ------~~~~~-----~~~--------~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~---~---~~~  334 (536)
                            ++.+.     .+.        |...|.++.  +++ ++++++ ++.|++||+++++.+..+. .   |   ...
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~h~~~~~~  235 (397)
T 1sq9_A          158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE-SQHSMINNSNS  235 (397)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE-CCC---CCCCC
T ss_pred             cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEe-ccccccccCCc
Confidence                  66554     442        577788877  777 888888 8999999999999988885 5   7   899


Q ss_pred             eEEEEEeCCCCEEEEEcCC---CcEEEEEcccCccccccceeeeccC-------------CCCCeEEEEEcC--CeEEEE
Q 009373          335 TKSLARSHTGDFLFTGGED---GAIHMYEIINDCTEANVLLVATWIP-------------HTGPVNSLAFEF--PWLVSA  396 (536)
Q Consensus       335 i~~l~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~--~~l~s~  396 (536)
                      |.+++|+|++.+|++++.|   |.|++||++++      ..+..+.+             |...|.+++|+|  .+|+++
T Consensus       236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             EEEEEECSSTTEEEEEEEETTEEEEEEEETTTC------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCCceEEEEECCCC------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence            9999999999999999999   99999999987      56777777             999999999986  799999


Q ss_pred             eCCCcEEEEECCcccccCCCCCCCceeeEEee-----CCCeeeeccccccEEEEEecCC------------EEEEecCCC
Q 009373          397 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV-----EPPQRMLHGFECNLLSVDIGAD------------RIVCGGEEG  459 (536)
Q Consensus       397 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~------------~l~sg~~Dg  459 (536)
                      +.||.|++||+++..............   ..     .........|...|.++.++++            +|++|+.||
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDI---EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGC---SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcc---cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            999999999998753322111000000   00     0000001123667777776554            899999999


Q ss_pred             eEEEEeCCchh
Q 009373          460 IVRIWNFSQAF  470 (536)
Q Consensus       460 ~i~vW~~~~~~  470 (536)
                      .|++|++.+|+
T Consensus       387 ~i~iw~~~~g~  397 (397)
T 1sq9_A          387 SIRWFREAGGK  397 (397)
T ss_dssp             EEEEEEEEC--
T ss_pred             cEEEEEcCCCC
Confidence            99999998763

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.6e-36  Score=288.63  Aligned_cols=237  Identities=16%  Similarity=0.150  Sum_probs=200.0

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee----eCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS----SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~----~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  225 (536)
                      .....|..+|.+++|+|++ .|++|+.||+|+|||+.+++.+..    ..+|...|.++.  |++++|++|+.||+|++|
T Consensus        76 ~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           76 SAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             SEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3445678899999999975 688999999999999999876543    357888887665  899999999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eC-CEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~  299 (536)
                      |+.++.             ....+.+|.+.|.+++|  ++ ..|++|+.|++|++||+++++....+.   +...+.++.
T Consensus       155 d~~~~~-------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          155 DLAQQV-------------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             ETTTTE-------------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             ECCCCc-------------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeee
Confidence            997753             66778899999999999  34 578999999999999999999888775   555677776


Q ss_pred             --e-cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          300 --P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       300 --~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                        + +++++++++ |+.|++||+++++++..+. +|...|++++|+|++ .+|++|+.||+|+|||+.++      . +.
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~------~-~~  293 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS------E-LF  293 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC------E-EE
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC------c-EE
Confidence              4 466888877 8999999999999999886 699999999999998 57999999999999999877      3 34


Q ss_pred             eccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcc
Q 009373          375 TWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .+.+|.+.|++++|+|   .+|++++.||+|++|++.+.
T Consensus       294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            5689999999999986   46789999999999999763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.5e-36  Score=291.59  Aligned_cols=302  Identities=15%  Similarity=0.119  Sum_probs=237.7

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      .+..|.++|++++|+|++++|++|+.|+.|++||+.+++  .+..+.+|...|.++.  +++++|++++.||.|++||+.
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            456699999999999999999999999999999999987  8888888988887665  889999999999999999997


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE---eEeee--ccccEEEEe--
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLA--  299 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~--~~~~v~~~~--  299 (536)
                      ++.           ......+..|...|.+++|  ++++|++++.||.|++||+..++.   ...+.  |...|.++.  
T Consensus        83 ~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~  151 (372)
T 1k8k_C           83 GRT-----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH  151 (372)
T ss_dssp             TTE-----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred             CCe-----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence            653           1234445679999999999  678999999999999999987763   23332  788899887  


Q ss_pred             ecCCEEEEec-CCcEEEEeC------------------CCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          300 PHDTTVASTS-GSDVYIWDT------------------NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~------------------~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      +++.++++++ |+.|++||+                  ..++.+..+. +|...|.+++|+|++++|++++.||.|++||
T Consensus       152 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            7888999888 899999995                  4677777775 6999999999999999999999999999999


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCc--cc--ccCCCCCCCc--------eeeE--
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK--LL--RSGRPTSGKR--------VSRV--  425 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~--~~--~~~~~~~~~~--------~~~~--  425 (536)
                      ++++      ..+..+..|..+|.+++|+| ..+++++.|+.|++||+.+  +.  ..........        ...+  
T Consensus       231 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          231 ADKK------MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             GGGT------TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             CCCC------ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence            9988      67788889999999999986 3444444999999999987  31  0000000000        0000  


Q ss_pred             -EeeCCC-------eeeeccccccEEEEEe---cC---CEEEEecCCCeEEEEeCCchhhH
Q 009373          426 -IEVEPP-------QRMLHGFECNLLSVDI---GA---DRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       426 -~~~~~~-------~~~~~~~~~~v~~~~~---~~---~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                       ......       .....+|...|.++++   ++   .+|+||+.||.|++|++.+++.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence             000000       1223488888988873   33   79999999999999999876543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.7e-36  Score=284.38  Aligned_cols=266  Identities=16%  Similarity=0.199  Sum_probs=218.2

Q ss_pred             eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE
Q 009373          192 SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY  267 (536)
Q Consensus       192 ~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~  267 (536)
                      ..+++.+|...|.++.  |++.+|++|+.||+|++||+.++.             ....+..|..+|.+++|  ++++|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~   71 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV-------------EVRSIQVTETPVRAGKFIARKNWII   71 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-------------EEEEEECCSSCEEEEEEEGGGTEEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc-------------eeEEeeccCCcEEEEEEeCCCCEEE
Confidence            4556777888776654  999999999999999999997653             56678889999999999  788999


Q ss_pred             EEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC-
Q 009373          268 SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-  342 (536)
Q Consensus       268 s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-  342 (536)
                      +|+.|++|++||+.+++.+..+. |...|.+++  |++.++++++ |++|++||++++..+.....+|...|.+++|+| 
T Consensus        72 s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~  151 (304)
T 2ynn_A           72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (304)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT
T ss_pred             EECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC
Confidence            99999999999999999998887 999999987  8899999988 899999999988555444357999999999999 


Q ss_pred             CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC----CeEEEEeCCCcEEEEECCcccccCCCCC
Q 009373          343 TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTS  418 (536)
Q Consensus       343 ~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~  418 (536)
                      ++.+|++|+.||+|++||++....     ......+|...|..+.|.+    .+|++|+.|++|++||+++.        
T Consensus       152 ~~~~l~sgs~D~~v~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------  218 (304)
T 2ynn_A          152 DPSTFASGCLDRTVKVWSLGQSTP-----NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------  218 (304)
T ss_dssp             CTTEEEEEETTSEEEEEETTCSSC-----SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT--------
T ss_pred             CCCEEEEEeCCCeEEEEECCCCCc-----cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC--------
Confidence            678999999999999999987631     2222346778899999964    58999999999999999873        


Q ss_pred             CCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccc
Q 009373          419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTE  496 (536)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (536)
                                 .....+.+|...|.++.++++  +|++|+.||+|++||+.+++.+.....          ......+++
T Consensus       219 -----------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~----------~~~~~~~~~  277 (304)
T 2ynn_A          219 -----------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV----------GLERSWCIA  277 (304)
T ss_dssp             -----------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC----------SSSSEEEEE
T ss_pred             -----------ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccC----------CCccEEEEE
Confidence                       233456788888888877665  899999999999999998765543211          123356889


Q ss_pred             cccCCCCc
Q 009373          497 MSSKGGRT  504 (536)
Q Consensus       497 ~~~~g~~~  504 (536)
                      ++|+|+..
T Consensus       278 ~~~~~~~~  285 (304)
T 2ynn_A          278 THPTGRKN  285 (304)
T ss_dssp             ECTTCGGG
T ss_pred             ECCCCCce
Confidence            89998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-35  Score=284.21  Aligned_cols=282  Identities=14%  Similarity=0.171  Sum_probs=237.5

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ....+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.++.  +++++|++++.||.|++||+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            4578999999999999999999999999999999999999999999999999887765  78999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC-----CeEEEEeCCCceEe-----------Eee
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-----MTVRVWDRALLKCL-----------KVL  289 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-----g~i~iwd~~~~~~~-----------~~~  289 (536)
                      .++.             ....+. |...|.+++|  ++..+++++.+     |.|++||+.+....           ..+
T Consensus       104 ~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~  169 (369)
T 3zwl_B          104 SNGQ-------------CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI  169 (369)
T ss_dssp             TTCC-------------EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred             CCCc-------------EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence            7753             333443 8889999999  77899999999     99999998765422           122


Q ss_pred             e-ccc--cEEEEe--ecCCEEEEec-CCcEEEEeCCC-CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373          290 R-HSD--WVYGLA--PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       290 ~-~~~--~v~~~~--~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~  362 (536)
                      . +..  .+.++.  ++++++++++ ++.|++||+++ ++.+..+. .|...|.+++|+|++.+|++++.||.|++||++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          170 ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            2 333  677766  8888998888 89999999999 67777775 699999999999999999999999999999999


Q ss_pred             cCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC--------------cEEEEECCcccccCCCCCCCceeeEE
Q 009373          363 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG--------------KLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       363 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                      +.      ..+..+. +...+.+++|+|  .++++++.++              .+++||+.+.                
T Consensus       249 ~~------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----------------  305 (369)
T 3zwl_B          249 TL------QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----------------  305 (369)
T ss_dssp             TC------CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC----------------
T ss_pred             CC------ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC----------------
Confidence            87      4455544 788999999986  7999999988              7999998773                


Q ss_pred             eeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhH
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                         .....+.+|...|.++.++++  +|++|+.||.|++|++.++...
T Consensus       306 ---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  350 (369)
T 3zwl_B          306 ---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD  350 (369)
T ss_dssp             ---CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred             ---cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence               333456778888888887654  9999999999999999987543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-34  Score=279.09  Aligned_cols=274  Identities=20%  Similarity=0.272  Sum_probs=230.8

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee---ee--CCCCceEEEEe--cCCCEEEEEeCCCcEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA---SS--KPLGCTIRAVA--ADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~---~~--~~~~~~v~~~~--~~~~~l~sg~~dg~i~v  224 (536)
                      ....+|.+.|++++|+|++++|++++ ||.|++||+.++....   .+  .+|...+.++.  |++++|++++.||.|++
T Consensus        45 ~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence            34458999999999999999999999 9999999998875332   22  26777776655  88999999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--  299 (536)
                      ||+.++.           ......+..|...|.+++|  +++.+++++.||.|++||+++++....+. |...+.++.  
T Consensus       124 ~d~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          124 WDLAAPT-----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             EECCCC-------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             EECCCCC-----------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence            9997653           2245567789999999999  67899999999999999999999888887 888999887  


Q ss_pred             ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                      |+++++++++ ++.|++||+++++.+..+.  +...+.+++|+|++++|++++.||.|++||+++..       ...+..
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~  263 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHL  263 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECC
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-------eEEEcC
Confidence            7888999888 8999999999999888874  78899999999999999999999999999998872       345678


Q ss_pred             CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--CCEEEE
Q 009373          379 HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVC  454 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s  454 (536)
                      |...|.+++|+|  .+|++++.||.|++||+.+....                    ....|...+.++.++  +++|++
T Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--------------------~~~~~~~~v~~~~~s~~~~~l~~  323 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--------------------FQSKESSSVLSCDISVDDKYIVT  323 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------------------EEEECSSCEEEEEECTTSCEEEE
T ss_pred             CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--------------------EEecCCCcEEEEEECCCCCEEEE
Confidence            999999999986  79999999999999999874221                    112345566666665  459999


Q ss_pred             ecCCCeEEEEeC
Q 009373          455 GGEEGIVRIWNF  466 (536)
Q Consensus       455 g~~Dg~i~vW~~  466 (536)
                      ++.||.|++|++
T Consensus       324 ~~~dg~i~iw~~  335 (337)
T 1gxr_A          324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             ecCCCeEEEEEE
Confidence            999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=6.2e-36  Score=297.36  Aligned_cols=307  Identities=16%  Similarity=0.113  Sum_probs=238.7

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEE-EEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR-AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  237 (536)
                      ..+++++|+|++++|++|+.||.|++||+.+++....+..+..... .+.+++++|++|+.||.|++||+.++.      
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL------  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE------
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc------
Confidence            3455899999999999999999999999998887777766644333 456899999999999999999987642      


Q ss_pred             cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CC
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GS  311 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  311 (536)
                             ....+.+|.+.|.+++|  ++++|++|+.|++|++||+.+++.+..+. |...|.+++  |++.++++++ |+
T Consensus       131 -------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~  203 (420)
T 3vl1_A          131 -------QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDG  203 (420)
T ss_dssp             -------EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred             -------eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence                   44455789999999999  67899999999999999999999888887 899999887  7899999888 89


Q ss_pred             cEEEEeCCCCcEEEEEcc--ccccceEEE---------------------EEeCCCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          312 DVYIWDTNSGCLLTVVNG--AHVGNTKSL---------------------ARSHTGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       312 ~i~i~d~~~~~~~~~~~~--~~~~~i~~l---------------------~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                      .|++||+++++.+..+..  .+...+.++                     +|+|++++|++|+.||.|++||++++.   
T Consensus       204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~---  280 (420)
T 3vl1_A          204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE---  280 (420)
T ss_dssp             CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC---
T ss_pred             cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc---
Confidence            999999999999888753  234444444                     457889999999999999999998873   


Q ss_pred             ccceeeeccCCCCCeEEEEEcCC---eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEE
Q 009373          369 NVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLS  444 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~  444 (536)
                        .......+|...|++++|+|+   +|++|+.||.|++||+++...                  +...+.+ |...+.+
T Consensus       281 --~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~------------------~~~~~~~~~~~~v~~  340 (420)
T 3vl1_A          281 --QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC------------------PVGEFLINEGTPINN  340 (420)
T ss_dssp             --EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------------CSEEEEESTTSCEEE
T ss_pred             --eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC------------------chhhhhccCCCCceE
Confidence              223334568999999999873   999999999999999987522                  1222333 5556666


Q ss_pred             EEec-CCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCC
Q 009373          445 VDIG-ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGG  502 (536)
Q Consensus       445 ~~~~-~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  502 (536)
                      +.+. +.+|++++.||.|++|++..+......... ...............++|+|+|.
T Consensus       341 ~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          341 VYFAAGALFVSSGFDTSIKLDIISDPESERPAIEF-ETPTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             EEEETTEEEEEETTTEEEEEEEECCTTCCSCEECT-TSCEEECCSSCCCCEEEEECCSS
T ss_pred             EEeCCCCEEEEecCCccEEEEeccCCCCCccceec-cCccEEccCCcceEEEEEccCCC
Confidence            6544 449999999999999999875332211111 11111122334567889999998

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.2e-35  Score=281.34  Aligned_cols=240  Identities=17%  Similarity=0.226  Sum_probs=211.2

Q ss_pred             ccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcE
Q 009373          148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFI  222 (536)
Q Consensus       148 ~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i  222 (536)
                      ...+..+.+|...|.+++|+|++++|++|+.|+.|++|++.++    .....+.+|...+.++. .++..+++++.|++|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i  166 (340)
T 1got_B           87 TNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC  166 (340)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCE
T ss_pred             CCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcE
Confidence            3457788999999999999999999999999999999999876    34566788988887776 334469999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA  299 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  299 (536)
                      ++||+.++.             ....+.+|.+.|.+++|  ++.++++|+.||+|++||++++++...+. |...|.+++
T Consensus       167 ~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~  233 (340)
T 1got_B          167 ALWDIETGQ-------------QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC  233 (340)
T ss_dssp             EEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred             EEEECCCCc-------------EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEE
Confidence            999997753             56678899999999999  66799999999999999999999988887 888999887


Q ss_pred             --ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          300 --PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       300 --~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                        |++.++++++ |++|++||+++++.+..+.. .+...|++++|+|+|++|++|+.||.|++||+.+.      ..+..
T Consensus       234 ~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------~~~~~  307 (340)
T 1got_B          234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------DRAGV  307 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------CEEEE
T ss_pred             EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC------cEeeE
Confidence              8899999998 89999999999988877642 23357999999999999999999999999999887      56778


Q ss_pred             ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373          376 WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  406 (536)
Q Consensus       376 ~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  406 (536)
                      +.+|.++|.+++|+|  .+|++|+.||.|++||
T Consensus       308 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            899999999999986  6999999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-36  Score=299.81  Aligned_cols=320  Identities=14%  Similarity=0.134  Sum_probs=247.6

Q ss_pred             ccccEEEEEEecCCC-EEEEE----------eCCCcEEEEECCCCce---eeeeCCCCceEEEE--ecCCCEEEEEeCCC
Q 009373          157 HTEAVLTVFVLASAK-LLFTS----------GYDSIVRMWHLEDGFS---IASSKPLGCTIRAV--AADKKLLVAGGTDG  220 (536)
Q Consensus       157 h~~~V~~v~~~~~~~-~l~sg----------s~dg~v~iwd~~~~~~---~~~~~~~~~~v~~~--~~~~~~l~sg~~dg  220 (536)
                      +...|.+++|+|++. +|++|          +.|+.|++||+.++..   +..+ .|...+.++  ++++.+|++|+.||
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence            446789999999987 99999          8999999999998863   3333 466666655  48999999999999


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e-CCEEEEEecCCeEEEEeCCCce------EeEee--
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLK------CLKVL--  289 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~i~iwd~~~~~------~~~~~--  289 (536)
                      .|++||+.+..         ........+.+|.+.|.+++|  + +++|++++.||.|++||+.+++      ....+  
T Consensus        90 ~v~vw~~~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  160 (416)
T 2pm9_A           90 SLELYSTNEAN---------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ  160 (416)
T ss_dssp             CEEEECCSSTT---------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred             eEEEeeccccc---------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence            99999997621         012356677889999999999  3 6799999999999999999876      33333  


Q ss_pred             --eccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEcccc-----ccceEEEEEeCCC-CEEEEEcCCC---
Q 009373          290 --RHSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-----VGNTKSLARSHTG-DFLFTGGEDG---  354 (536)
Q Consensus       290 --~~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-----~~~i~~l~~~~~~-~~l~tg~~dg---  354 (536)
                        .|...|.+++  ++ +.++++++ |+.|++||+++++.+..+...+     ...|.+++|+|++ .++++++.|+   
T Consensus       161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~  240 (416)
T 2pm9_A          161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDP  240 (416)
T ss_dssp             SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSC
T ss_pred             ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCc
Confidence              3788888887  65 67888888 8999999999999988886321     7899999999997 6899999999   


Q ss_pred             cEEEEEcccCccccccceeeecc-CCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCC
Q 009373          355 AIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEP  430 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  430 (536)
                      .|++||+++..     .++..+. +|...|++++|+|   .+|++++.||.|++||+++.                   .
T Consensus       241 ~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-------------------~  296 (416)
T 2pm9_A          241 SILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-------------------E  296 (416)
T ss_dssp             CCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-------------------C
T ss_pred             eEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-------------------c
Confidence            99999998863     3556677 8999999999975   69999999999999999874                   2


Q ss_pred             CeeeeccccccEEEEEecC---CEEEEecCCCeEEEEeCCchhhHHHHHH-----hhh--------------------cc
Q 009373          431 PQRMLHGFECNLLSVDIGA---DRIVCGGEEGIVRIWNFSQAFEIERRAR-----ALR--------------------GI  482 (536)
Q Consensus       431 ~~~~~~~~~~~v~~~~~~~---~~l~sg~~Dg~i~vW~~~~~~~~~~~~~-----~~~--------------------~~  482 (536)
                      ....+.+|...+.++.+++   .+|++++.||.|++|++.++........     ...                    ..
T Consensus       297 ~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (416)
T 2pm9_A          297 QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL  376 (416)
T ss_dssp             EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC
T ss_pred             cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc
Confidence            2334556777776666654   5999999999999999998664322110     000                    00


Q ss_pred             cchhHHHhhhhccccccCCCCcceeEee
Q 009373          483 RLENRMRRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      .......+....++|+|+|+.+++++.+
T Consensus       377 ~~~~~~~~~~~~~~~s~dg~~la~~~~d  404 (416)
T 2pm9_A          377 QAPTWYGEPSPAAHWAFGGKLVQITPDG  404 (416)
T ss_dssp             CCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred             cCCccccCCccceEEeeCCeEEEEeCCC
Confidence            0011133445589999999999987643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=294.78  Aligned_cols=310  Identities=10%  Similarity=0.134  Sum_probs=226.1

Q ss_pred             ceeee-eCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCC---Cc---eeeeeCCCCceEEEEe--cCCCEEEEEeCC
Q 009373          150 SIDVL-YGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLED---GF---SIASSKPLGCTIRAVA--ADKKLLVAGGTD  219 (536)
Q Consensus       150 ~~~~l-~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~---~~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~d  219 (536)
                      .+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+   +.   ....+ .|...|.++.  ++++.|++|+.|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            46677 89999999999999 999999999999999999876   43   22222 4777776665  889999999999


Q ss_pred             CcEEEEEcc---cCccceecccCcccccceEEe--eC--CccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373          220 GFIHCWRAV---EVLPHLFDISGSEKQNTQFRL--WE--HEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       220 g~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~--~~--h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      |+|++||+.   ++..... ..    ...+..+  ..  +...+.++.+    ++..|++|+.||.|++||+++++.+..
T Consensus       133 g~i~vwd~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  207 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKF-LN----CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI  207 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEE-EE----EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CEEEEEEeccccCCceeec-cc----cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence            999999995   3221100 00    0011111  12  6677888885    478999999999999999999999888


Q ss_pred             ee---ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe----CCCCEEEEEcCCCcEEE
Q 009373          289 LR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS----HTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       289 ~~---~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~tg~~dg~i~i  358 (536)
                      +.   |...|.+++  |++.++++++ |+.|++||+++++.+..+..+|...|++++++    |++.+|++|+.||.|++
T Consensus       208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i  287 (437)
T 3gre_A          208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI  287 (437)
T ss_dssp             EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred             EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence            86   678999887  7899999888 89999999999999998865688899999665    46779999999999999


Q ss_pred             EEcccCcccccccee------------------eeccC--CCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCC
Q 009373          359 YEIINDCTEANVLLV------------------ATWIP--HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPT  417 (536)
Q Consensus       359 wd~~~~~~~~~~~~~------------------~~~~~--h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~  417 (536)
                      ||++++.....+...                  ..+.+  |...|++++|++ .+|++|+.||.|++||+.++.......
T Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  367 (437)
T 3gre_A          288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVI  367 (437)
T ss_dssp             EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred             EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEe
Confidence            999877421111000                  01223  778899999986 589999999999999999875543322


Q ss_pred             CCC----ceeeEEeeC--------------CCeeeeccccccEEEEEecCC----EEEEecCCCeEEEEe
Q 009373          418 SGK----RVSRVIEVE--------------PPQRMLHGFECNLLSVDIGAD----RIVCGGEEGIVRIWN  465 (536)
Q Consensus       418 ~~~----~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~~~~----~l~sg~~Dg~i~vW~  465 (536)
                      ...    .........              ........|...|.++++.++    +|+||+.||.|+||+
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            110    000000000              111122347788888776544    999999999999995

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.5e-36  Score=294.67  Aligned_cols=300  Identities=12%  Similarity=0.073  Sum_probs=220.2

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+..|.++|++++|+|++++|++|+.|+.|++||+.++  +.+..+.+|...|.++.  |++++|++|+.||+|++||+
T Consensus         5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            455667889999999999999999999999999999988  78888899998887765  88999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE---eEeee--ccccEEEEe-
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLA-  299 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~--~~~~v~~~~-  299 (536)
                      .++.          .......+.+|...|.+++|  ++++|++++.|+.|++||+++++.   ...+.  |...|.+++ 
T Consensus        85 ~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~  154 (377)
T 3dwl_C           85 RPDG----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW  154 (377)
T ss_dssp             --------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred             CCCC----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence            7752          12345667789999999999  678999999999999999998873   45554  888999987 


Q ss_pred             -ecCCEEEEec-CCcEEEEeCCC------------------CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          300 -PHDTTVASTS-GSDVYIWDTNS------------------GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       300 -~~~~~l~~~~-d~~i~i~d~~~------------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                       |+++++++++ |+.|++||+..                  ++.+..+  +|...|++++|+|++++|++|+.||.|++|
T Consensus       155 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iw  232 (377)
T 3dwl_C          155 HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIA  232 (377)
T ss_dssp             CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-C
T ss_pred             cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEE
Confidence             7888999888 89999999852                  4455555  699999999999999999999999999999


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccccc-CCCCC-CCc--------------
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS-GRPTS-GKR--------------  421 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~-~~~~~-~~~--------------  421 (536)
                      |+.++...  ...+..+.+|..+|.+++|+|  .+|++++.|+ +.+|+....... ..... ...              
T Consensus       233 d~~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (377)
T 3dwl_C          233 YPSAPEQP--PRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGR  309 (377)
T ss_dssp             EECSTTSC--EEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCC
T ss_pred             ECCCCCCc--ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EEEEEeCCCceEEEeeeccccccccccccccccccc
Confidence            99988321  112677889999999999976  5677776555 457776532111 00000 000              


Q ss_pred             --eee---------EEe------eCCCeeeeccccccEEEEEecC---C---EEEEecCCCeEEEEeC
Q 009373          422 --VSR---------VIE------VEPPQRMLHGFECNLLSVDIGA---D---RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       422 --~~~---------~~~------~~~~~~~~~~~~~~v~~~~~~~---~---~l~sg~~Dg~i~vW~~  466 (536)
                        ...         +..      ..........|...|.++.+.+   .   .|+|||.||.|++||+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          310 EEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             CC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence              000         000      0011112234888888887532   2   6999999999999986

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.5e-34  Score=283.67  Aligned_cols=285  Identities=10%  Similarity=0.036  Sum_probs=217.7

Q ss_pred             cceeeeeCccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCCceeeeeC--CCCceEEEEe--c-CCCEEEEEeCCCcE
Q 009373          149 YSIDVLYGHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDGFSIASSK--PLGCTIRAVA--A-DKKLLVAGGTDGFI  222 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~--~-~~~~l~sg~~dg~i  222 (536)
                      .....+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+.  +|...|.++.  | ++.+|++++.||.|
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            4567889999999999999998 999999999999999999888777665  5888887766  6 67899999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA  299 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~  299 (536)
                      ++||+.+..           ........+|...|.+++|  ++..|++|+.|+.|++||+ +++.+..+. |...|.+++
T Consensus       144 ~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~  211 (383)
T 3ei3_B          144 TLRDFSGSV-----------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAE  211 (383)
T ss_dssp             EEEETTSCE-----------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred             EEEECCCCc-----------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence            999997531           1112222345588999999  6789999999999999999 466666666 899999988


Q ss_pred             --ecCC-EEEEec-CCcEEEEeCCC----CcEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCcccccc
Q 009373          300 --PHDT-TVASTS-GSDVYIWDTNS----GCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       300 --~~~~-~l~~~~-d~~i~i~d~~~----~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                        +++. ++++++ |+.|++||+++    +..+..+  +|...|++++|+| ++.+|++++.||.|++||+++.......
T Consensus       212 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  289 (383)
T 3ei3_B          212 FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI  289 (383)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred             ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence              7777 888887 89999999998    6666666  5999999999999 9999999999999999999887432111


Q ss_pred             ce-eeeccCCCC----------CeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-
Q 009373          371 LL-VATWIPHTG----------PVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-  437 (536)
Q Consensus       371 ~~-~~~~~~h~~----------~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  437 (536)
                      .. ......|..          .+..++|+| ..+ +++.||.|++||+.++..                   ...+.+ 
T Consensus       290 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~-------------------~~~l~~~  349 (383)
T 3ei3_B          290 IIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGL-------------------VHQLRDP  349 (383)
T ss_dssp             EECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCE-------------------EEEECBT
T ss_pred             ccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCce-------------------eeeecCC
Confidence            10 001112233          334455554 222 777899999999987432                   222322 


Q ss_pred             -ccccEE--EEEecCCEEEEecCCCeEEEEeCCc
Q 009373          438 -FECNLL--SVDIGADRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       438 -~~~~v~--~~~~~~~~l~sg~~Dg~i~vW~~~~  468 (536)
                       |...+.  ++++++.+|++|+ ||.|++||+++
T Consensus       350 ~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          350 NAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence             333343  4555666999997 99999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.1e-34  Score=327.08  Aligned_cols=335  Identities=16%  Similarity=0.211  Sum_probs=260.4

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ....+.+|.+.|++++|+|++++|++|+.||+|++||+.+++.+..+.+|...|.++.  |++++|++|+.||+|++||+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence            3457889999999999999999999999999999999999999999999999887765  89999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  300 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~  300 (536)
                      .++.             ....+.+|...|.+++|    ++..+++|+.||.|++||+.++++...+. |...|.++.  |
T Consensus       687 ~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp  753 (1249)
T 3sfz_A          687 ATGK-------------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP  753 (1249)
T ss_dssp             TTCC-------------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS
T ss_pred             CCCc-------------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec
Confidence            7753             56667788889999988    23478888999999999998888887776 888888776  7


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEE-----------------------------------------------------
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTV-----------------------------------------------------  326 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~-----------------------------------------------------  326 (536)
                      +++++++++ |+.|++||+.+++....                                                     
T Consensus       754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~  833 (1249)
T 3sfz_A          754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA  833 (1249)
T ss_dssp             STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence            888888887 78888888876654333                                                     


Q ss_pred             -EccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEE
Q 009373          327 -VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLS  403 (536)
Q Consensus       327 -~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  403 (536)
                       +..+|...+.+++|+|++.++++|+.||.|++||+.++      ..+..+.+|...|++++|+|  .+|++++.||.|+
T Consensus       834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~  907 (1249)
T 3sfz_A          834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR------LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR  907 (1249)
T ss_dssp             EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC------ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEE
Confidence             22367788999999999999999999999999999988      67888899999999999986  6999999999999


Q ss_pred             EEECCcccccCCCCCCCcee--------------------eEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEE
Q 009373          404 LIDVRKLLRSGRPTSGKRVS--------------------RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRI  463 (536)
Q Consensus       404 vwd~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~v  463 (536)
                      +||+.+..............                    ....................+++++++++++|+.||.|++
T Consensus       908 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i  987 (1249)
T 3sfz_A          908 VWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKI  987 (1249)
T ss_dssp             EEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEE
T ss_pred             EEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEE
Confidence            99987643322211110000                    0000011111112222334445555669999999999999


Q ss_pred             EeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeeccc
Q 009373          464 WNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKK  513 (536)
Q Consensus       464 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  513 (536)
                      |++.++..+....          .....+.+++|+|+|..+++++.+...
T Consensus       988 ~d~~~~~~~~~~~----------~h~~~v~~l~~s~dg~~l~s~~~dg~i 1027 (1249)
T 3sfz_A          988 IELPNNRVFSSGV----------GHKKAVRHIQFTADGKTLISSSEDSVI 1027 (1249)
T ss_dssp             EETTTTSCEEECC----------CCSSCCCCEEECSSSSCEEEECSSSBE
T ss_pred             EEcCCCceeeecc----------cCCCceEEEEECCCCCEEEEEcCCCEE
Confidence            9999876443211          123456789999999999998765443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.5e-34  Score=279.52  Aligned_cols=289  Identities=13%  Similarity=0.097  Sum_probs=225.7

Q ss_pred             cccEEEEEEecCCCEEEEEeCCC-------cEEEEECCCCce----------eeeeCCCCceEEEEecCCCEEEEEe---
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDS-------IVRMWHLEDGFS----------IASSKPLGCTIRAVAADKKLLVAGG---  217 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg-------~v~iwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~l~sg~---  217 (536)
                      .-+|++++|+|++++|++|+.|.       .|++|++..+..          ...+.+|...+.+++++++.+++|.   
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~   93 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNEN   93 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCC
Confidence            45899999999999999998654       599999876532          1245778888999999998888764   


Q ss_pred             --------CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE--EecCCeEEEEeCCCceE
Q 009373          218 --------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS--GSWDMTVRVWDRALLKC  285 (536)
Q Consensus       218 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s--~s~dg~i~iwd~~~~~~  285 (536)
                              .|+.+++|++.+..........    ........+...+.+++|  |++++++  ++.|++|++||+.++++
T Consensus        94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~  169 (365)
T 4h5i_A           94 STKITQGKGNKHLRKFKYDKVNDQLEFLTS----VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE  169 (365)
T ss_dssp             HHHHHHTSCCCCEEEEEEETTTTEEEEEEE----ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred             ccEEEEecCCCcEEEEEecCCCceEEEeee----eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence                    5678999988665321110000    001112345567889999  7777764  45799999999999999


Q ss_pred             eEeeeccccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEE-EccccccceEEEEEeCCCCEEEEEcCCC----cEEE
Q 009373          286 LKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDFLFTGGEDG----AIHM  358 (536)
Q Consensus       286 ~~~~~~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~tg~~dg----~i~i  358 (536)
                      +..+.|...|.+++  |+++++++++++.+.+|+..+++.+.. ...+|...|.+++|+|++.++++++.|+    .+++
T Consensus       170 ~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~  249 (365)
T 4h5i_A          170 KFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK  249 (365)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred             EEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence            99999888999887  899999999988899999888876654 3346888999999999999999999887    5888


Q ss_pred             EEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373          359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  436 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (536)
                      |++.....  .......+.+|..+|++++|+|  .+|++|+.|++|+|||++++...                  ...+.
T Consensus       250 ~~~~~~~~--~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~------------------~~~~~  309 (365)
T 4h5i_A          250 ISIKSGNT--SVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMS------------------KIFKQ  309 (365)
T ss_dssp             EEEETTEE--EEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------------------EEETT
T ss_pred             ccccccee--cceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEE------------------EEecC
Confidence            88876631  1233556789999999999987  79999999999999999874211                  12347


Q ss_pred             cccccEEEEEecCC--EEEEecCCCeEEEEeCCchh
Q 009373          437 GFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       437 ~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      +|...|.+++|+++  +|||||.|++|+||+++++.
T Consensus       310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence            89999999888765  99999999999999997654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.4e-34  Score=269.88  Aligned_cols=246  Identities=15%  Similarity=0.132  Sum_probs=201.2

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC--CceeeeeCCCCceEEEEe--c--CCCEEEEEeCCCcEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED--GFSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIHC  224 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~--~~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~v  224 (536)
                      +..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  ++.+.++.+|...|.++.  +  ++++|++|+.||+|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            457889999999999999999999999999999999974  467888999999998876  3  3789999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEEEEecCCeEEEEeCCCceE--eEeee-ccccEEE
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKC--LKVLR-HSDWVYG  297 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~v~~  297 (536)
                      ||+.++.           ......+.+|...|.+++|.    +.+|++++.|++|++||++++..  ...+. |...|.+
T Consensus        82 Wd~~~~~-----------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           82 WKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             EEBSSSC-----------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             EEcCCCc-----------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence            9997652           22445677899999999993    57999999999999999987632  23333 8888988


Q ss_pred             Ee--ec-------------CCEEEEec-CCcEEEEeCCCCc----EEEEEccccccceEEEEEeCCC---CEEEEEcCCC
Q 009373          298 LA--PH-------------DTTVASTS-GSDVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHTG---DFLFTGGEDG  354 (536)
Q Consensus       298 ~~--~~-------------~~~l~~~~-d~~i~i~d~~~~~----~~~~~~~~~~~~i~~l~~~~~~---~~l~tg~~dg  354 (536)
                      ++  |+             +++|++++ |+.|++||+++++    ....+. +|...|++++|+|++   .+|++|+.|+
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D~  229 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDR  229 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECCC
Confidence            87  43             46888888 9999999998876    445554 799999999999985   8999999999


Q ss_pred             cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      +|++||++....... ........|...|.+++|+|  .+|++++.||.|++|+...
T Consensus       230 ~v~iWd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWK-KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEEEESSTTSCCE-EEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cEEEEEeCCCCCccc-eeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999999977521100 11112257889999999986  7999999999999999763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.5e-34  Score=281.95  Aligned_cols=290  Identities=13%  Similarity=0.167  Sum_probs=233.7

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ....+.+| ..+....|+|++++|++|+.||.|++||+.+++....+.+|...|.++.  |++++|++|+.||.|++||+
T Consensus        90 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~  168 (420)
T 3vl1_A           90 GSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV  168 (420)
T ss_dssp             TTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            34455666 5556667899999999999999999999999999888889998887765  88999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe--
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--  299 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~--  299 (536)
                      .++.             ....+.+|.+.|.+++|  +++.|++++.||+|++||+++++.+..+.    +...+.++.  
T Consensus       169 ~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          169 KDGS-------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             TTCC-------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred             CCCc-------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence            7653             45667899999999999  67899999999999999999999888876    344444443  


Q ss_pred             ---------------------ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcE
Q 009373          300 ---------------------PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAI  356 (536)
Q Consensus       300 ---------------------~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i  356 (536)
                                           ++++++++++ |+.|++||+++++.+..+..+|...|++++|+|++. +|++|+.||.|
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i  315 (420)
T 3vl1_A          236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML  315 (420)
T ss_dssp             ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence                                 5778888888 899999999999998888777899999999999998 99999999999


Q ss_pred             EEEEcccCccccccceeeeccC-CCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeee
Q 009373          357 HMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM  434 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (536)
                      ++||++++.     .++..+.+ |...|+++.+.+ .+|++++.||.|++||+..........         . ......
T Consensus       316 ~vwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~---------~-~~~~~~  380 (420)
T 3vl1_A          316 AQWDLRSPE-----CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAI---------E-FETPTF  380 (420)
T ss_dssp             EEEETTCTT-----SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEE---------C-TTSCEE
T ss_pred             EEEEcCCCc-----CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccce---------e-ccCccE
Confidence            999998873     23455555 778999998865 689999999999999998743322111         0 111222


Q ss_pred             eccccccEEEEE--ecCC---EEEEecCCCeEEEEeCCc
Q 009373          435 LHGFECNLLSVD--IGAD---RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       435 ~~~~~~~v~~~~--~~~~---~l~sg~~Dg~i~vW~~~~  468 (536)
                      +.+|...+.++.  +++.   .++++|.+|.+.+|++++
T Consensus       381 ~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          381 LVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             ECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            345555555544  5556   688888899999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.6e-34  Score=271.08  Aligned_cols=243  Identities=16%  Similarity=0.244  Sum_probs=208.2

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ++..+.+|...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++.  +++.+|++|+.|++|++||+
T Consensus        57 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~  136 (319)
T 3frx_A           57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI  136 (319)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred             cceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            5778999999999999999999999999999999999999999999999999888765  88999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEeC--------CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--------TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL  298 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  298 (536)
                      ...              ....+.+|...|.++.+.+        ..+++++.|++|++||+++.+....+. |...|.++
T Consensus       137 ~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  202 (319)
T 3frx_A          137 KGQ--------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL  202 (319)
T ss_dssp             TSC--------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred             CCC--------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEE
Confidence            532              5567789999999999932        379999999999999999998887776 89999988


Q ss_pred             e--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce--e
Q 009373          299 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL--V  373 (536)
Q Consensus       299 ~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--~  373 (536)
                      +  |++++|++++ |+.|++||+.+++.+..+.  +...|.+++|+|++.+|++++.+ .+++|++...........  .
T Consensus       203 ~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~  279 (319)
T 3frx_A          203 TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFA  279 (319)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCT
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccc
Confidence            7  8899999988 8999999999999998885  55789999999999999988765 499999977622111100  0


Q ss_pred             eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      .....|...+.+++|+|  .+|++|+.||.|++||+.+
T Consensus       280 ~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            11134567899999987  7999999999999999876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.7e-34  Score=311.70  Aligned_cols=282  Identities=18%  Similarity=0.238  Sum_probs=241.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+.+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.++  +|++++|++|+.||.|++||+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~   84 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence            357899999999999999999999999999999999999999999999998887765  499999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc-eEeEeee-ccccEEEEe--e-
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL-KCLKVLR-HSDWVYGLA--P-  300 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~v~~~~--~-  300 (536)
                      .++.             ....+.+|.+.|.+++|  ++.+|++++.||+|++||+.++ .....+. |...|.++.  | 
T Consensus        85 ~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~  151 (814)
T 3mkq_A           85 NTGE-------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK  151 (814)
T ss_dssp             TTCC-------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT
T ss_pred             CCCc-------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC
Confidence            7753             56677889999999999  6779999999999999999887 5566665 888899887  5 


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeC--CCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      ++..+++++ |+.|++||+.++.....+...+...+.+++|+|  ++.+|++|+.||.|++||+.++      ..+..+.
T Consensus       152 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~  225 (814)
T 3mkq_A          152 DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK------SCVATLE  225 (814)
T ss_dssp             EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT------EEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC------cEEEEEc
Confidence            677888887 899999999999888887766668999999999  9999999999999999999888      6778888


Q ss_pred             CCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EE
Q 009373          378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RI  452 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l  452 (536)
                      +|...|.+++|+|  .+|++++.||.|++||+.+..                   ....+..+...+.+++++++   .+
T Consensus       226 ~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-------------------~~~~~~~~~~~v~~~~~~~~~~~~~  286 (814)
T 3mkq_A          226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK-------------------VEKTLNVGLERSWCIATHPTGRKNY  286 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS-------------------EEEEECCSSSSEEEEEECTTCGGGE
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------------------EEEEeecCCCcEEEEEEccCCCceE
Confidence            9999999999987  689999999999999998742                   22334556667777777665   23


Q ss_pred             EEecCCCeEEEEeCCch
Q 009373          453 VCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       453 ~sg~~Dg~i~vW~~~~~  469 (536)
                      ++++.|+.+.+|++..+
T Consensus       287 ~~~~~~~~~~~~~~~~~  303 (814)
T 3mkq_A          287 IASGFDNGFTVLSLGND  303 (814)
T ss_dssp             EEEEETTEEEEEECSCC
T ss_pred             EEEEeCCCEEEEEcCCC
Confidence            44445677889987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-34  Score=326.46  Aligned_cols=354  Identities=16%  Similarity=0.192  Sum_probs=275.3

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--c--CCCEEEE
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A--DKKLLVA  215 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~s  215 (536)
                      ++.+.......+..+.+|.+.|.+++|+|++++|++|+.||+|++||+.+++.+..+.+|...+.++.  +  ++..+++
T Consensus       639 i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  718 (1249)
T 3sfz_A          639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT  718 (1249)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred             EEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE
Confidence            34455555566888999999999999999999999999999999999999999999999999888776  5  4568999


Q ss_pred             EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---
Q 009373          216 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---  290 (536)
Q Consensus       216 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---  290 (536)
                      |+.||.|++||+.++.             ....+.+|.+.|.+++|  +++.+++++.||+|++||+.+++....+.   
T Consensus       719 g~~d~~v~vwd~~~~~-------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  785 (1249)
T 3sfz_A          719 GSNDFFLKLWDLNQKE-------------CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR  785 (1249)
T ss_dssp             EETTSCEEEEETTSSS-------------EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCC
T ss_pred             EeCCCeEEEEECCCcc-------------hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccc
Confidence            9999999999997753             56678899999999999  77899999999999999998776544331   


Q ss_pred             -----------------------------------------------------ccccEEEEe--ecCCEEEEec-CCcEE
Q 009373          291 -----------------------------------------------------HSDWVYGLA--PHDTTVASTS-GSDVY  314 (536)
Q Consensus       291 -----------------------------------------------------~~~~v~~~~--~~~~~l~~~~-d~~i~  314 (536)
                                                                           |...|.++.  |++.++++++ ++.|+
T Consensus       786 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~  865 (1249)
T 3sfz_A          786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE  865 (1249)
T ss_dssp             CC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred             cccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEE
Confidence                                                                 334455554  7888898888 89999


Q ss_pred             EEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcc----------------------------
Q 009373          315 IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT----------------------------  366 (536)
Q Consensus       315 i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~----------------------------  366 (536)
                      +||+.++..+..+. +|...|++++|+|++.+|++++.||.|++||+.....                            
T Consensus       866 vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  944 (1249)
T 3sfz_A          866 LWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR  944 (1249)
T ss_dssp             EEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred             EEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence            99999999988885 6999999999999999999999999999999753100                            


Q ss_pred             ---------------------------------------------ccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC
Q 009373          367 ---------------------------------------------EANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD  399 (536)
Q Consensus       367 ---------------------------------------------~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d  399 (536)
                                                                   .........+.+|...|++++|+|  .+|++++.|
T Consensus       945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d 1024 (1249)
T 3sfz_A          945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSED 1024 (1249)
T ss_dssp             SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSS
T ss_pred             ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCC
Confidence                                                         001123445668999999999986  699999999


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEE-------------------e--eCCCeeeeccccccEEEEEecC--CEEEEec
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVI-------------------E--VEPPQRMLHGFECNLLSVDIGA--DRIVCGG  456 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~-------------------~--~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~  456 (536)
                      |.|++||+.++...........+..+.                   .  .......+.+|...+.++.+++  .++++|+
T Consensus      1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s 1104 (1249)
T 3sfz_A         1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104 (1249)
T ss_dssp             SBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEEC
T ss_pred             CEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEc
Confidence            999999998765443322222221111                   1  1223345566777777666655  4999999


Q ss_pred             CCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373          457 EEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN  517 (536)
Q Consensus       457 ~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  517 (536)
                      .||+|++||+.++..+....    +      ....+.+++|+|+|..+++++.+.....++
T Consensus      1105 ~d~~v~iwd~~~~~~~~~l~----~------h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1105 ADKTAKIWSFDLLSPLHELK----G------HNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             CSSCCCEECSSSSSCSBCCC----C------CSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             CCCcEEEEECCCcceeeeec----c------CCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            99999999999876543221    1      223467899999999999987665544443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-34  Score=285.08  Aligned_cols=290  Identities=14%  Similarity=0.116  Sum_probs=235.1

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccc
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      +|.+.|++++|+|++++|++|+.||.|++|| .+++.+..+..|...+.++.  |++++|++++.||.|++||+.++.  
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--  182 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT--  182 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE--
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc--
Confidence            3788999999999999999999999999999 77888899999988887765  889999999999999999997753  


Q ss_pred             eecccCcccccceEEeeCCccC---------------EEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373          234 LFDISGSEKQNTQFRLWEHEGP---------------ITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY  296 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~  296 (536)
                                 ....+..+...               +.+++| .++.+++++.||.|++||+.+++....+. |...|.
T Consensus       183 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~  251 (425)
T 1r5m_A          183 -----------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPIS  251 (425)
T ss_dssp             -----------EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEE
T ss_pred             -----------EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceE
Confidence                       33334444444               888888 66889999999999999999998887776 888898


Q ss_pred             EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      ++.  ++++++++++ ++.|++||+++++.+..+. +|...|.+++|+|++ ++++++.||.|++||++++      ..+
T Consensus       252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~------~~~  323 (425)
T 1r5m_A          252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN------TLL  323 (425)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT------EEE
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC------cEe
Confidence            887  7888999888 8999999999999888885 699999999999999 9999999999999999888      677


Q ss_pred             eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeE-EeeCCCeeeeccccc--cEEEEEec
Q 009373          374 ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-IEVEPPQRMLHGFEC--NLLSVDIG  448 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~v~~~~~~  448 (536)
                      ..+..|...|.+++|+|  .+|++++.||.|++||+++...............+ ....+....+.+|..  .|.++.++
T Consensus       324 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  403 (425)
T 1r5m_A          324 ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN  403 (425)
T ss_dssp             EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC
T ss_pred             EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc
Confidence            78889999999999986  79999999999999999876422211111100000 011224455677755  78888876


Q ss_pred             CC--EEEEecCCCeEEEEeCC
Q 009373          449 AD--RIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       449 ~~--~l~sg~~Dg~i~vW~~~  467 (536)
                      ++  +|++|+.||.|++|+++
T Consensus       404 ~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          404 CAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TTSSEEEEEESSSCCEEEECC
T ss_pred             CCCceEEEEecCceEEEEeec
Confidence            55  99999999999999986

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-34  Score=281.60  Aligned_cols=287  Identities=15%  Similarity=0.188  Sum_probs=228.5

Q ss_pred             eeeeCccccEEEEEEecC----CCEEEEEeCCCcEEEEECCCCceeeeeCC-----CCceEEE--EecC----CCEEEEE
Q 009373          152 DVLYGHTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKP-----LGCTIRA--VAAD----KKLLVAG  216 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~----~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-----~~~~v~~--~~~~----~~~l~sg  216 (536)
                      ....+|.++|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...+.+  ++++    +.+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            455699999999999984    45666777777999999998877666543     4455655  4576    6799999


Q ss_pred             eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEee----
Q 009373          217 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVL----  289 (536)
Q Consensus       217 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~----  289 (536)
                      +.||.|++||+.++.             ....+.+|...|.+++|   ++..|++|+.||.|++||+++++....+    
T Consensus        92 ~~dg~i~v~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  158 (366)
T 3k26_A           92 GSRGIIRIINPITMQ-------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE  158 (366)
T ss_dssp             ETTCEEEEECTTTCC-------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT
T ss_pred             cCCCEEEEEEchhce-------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc
Confidence            999999999997653             56677889999999999   4579999999999999999999998887    


Q ss_pred             eccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc---------------------------cccccceEEEE
Q 009373          290 RHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN---------------------------GAHVGNTKSLA  339 (536)
Q Consensus       290 ~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~---------------------------~~~~~~i~~l~  339 (536)
                      .|...|.++.  +++.++++++ |+.|++||+++++....+.                           .+|...|.+++
T Consensus       159 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  238 (366)
T 3k26_A          159 GHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR  238 (366)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred             cccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence            3889999988  7888999888 8999999999875443221                           23889999999


Q ss_pred             EeCCCCEEEEEcCCCcEEEEEcccCccc--------cccceeeeccCCCCCeEEEEEc----CCeEEEEeCCCcEEEEEC
Q 009373          340 RSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFE----FPWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       340 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~  407 (536)
                      |+  +++|++++.||.|++||+.+....        .....+..+.+|...|++++|+    +.+|++|+.||.|++||+
T Consensus       239 ~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~  316 (366)
T 3k26_A          239 WL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL  316 (366)
T ss_dssp             EE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred             Ec--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence            98  789999999999999999876421        1123467788899999999996    469999999999999999


Q ss_pred             CcccccCCCCCCCceeeEEeeCCCeeeeccc--cccEEEEEecC--CEEEEecCCCeEEEEeCCc
Q 009373          408 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF--ECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~  468 (536)
                      .+.....               .....+.+|  ...|.++.+++  ++|++|+.||.|++||+.+
T Consensus       317 ~~~~~~~---------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          317 EVEDPHK---------------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CSSSGGG---------------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCCCCcc---------------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            8753221               111234444  67788777765  4999999999999999853

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.4e-33  Score=294.50  Aligned_cols=318  Identities=15%  Similarity=0.161  Sum_probs=246.1

Q ss_pred             cceeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCc---eEEEEe--cC-CCEEEEEeCCCc
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC---TIRAVA--AD-KKLLVAGGTDGF  221 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~--~~-~~~l~sg~~dg~  221 (536)
                      ..+..+.+|.+.|.+++|+|+++ ++++|+.|+.|++||+.+++.+..+.+|..   .+.++.  |+ +++|++|+.||.
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  230 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK  230 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred             CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence            35778899999999999999998 899999999999999999999999998888   776665  88 999999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEe-e---CCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeec-----
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRL-W---EHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRH-----  291 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----  291 (536)
                      |++||+.++.             ....+ .   +|...|.+++| ++.+|++++.||.|++||+.+++.+..+..     
T Consensus       231 i~vwd~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  297 (615)
T 1pgu_A          231 ISCFDGKSGE-------------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  297 (615)
T ss_dssp             EEEEETTTCC-------------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             EEEEECCCCC-------------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence            9999997753             44445 4   89999999999 888999999999999999999999888873     


Q ss_pred             cccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC--------------------------
Q 009373          292 SDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--------------------------  343 (536)
Q Consensus       292 ~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~--------------------------  343 (536)
                      ...+.++. +++.++++++ ++.|++||+.+++.+..+. +|...|++++| |+                          
T Consensus       298 ~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v  375 (615)
T 1pgu_A          298 GNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLI  375 (615)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred             cCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCce
Confidence            35666666 6888888888 8999999999888777764 45555555444 32                          


Q ss_pred             -------CCEEEEEcCCCcEEEEEcccCcc--------------------------------------------------
Q 009373          344 -------GDFLFTGGEDGAIHMYEIINDCT--------------------------------------------------  366 (536)
Q Consensus       344 -------~~~l~tg~~dg~i~iwd~~~~~~--------------------------------------------------  366 (536)
                             +..|++++.||.|++||+.+...                                                  
T Consensus       376 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (615)
T 1pgu_A          376 VSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS  455 (615)
T ss_dssp             EEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC
T ss_pred             EEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc
Confidence                   55556666666666665543110                                                  


Q ss_pred             ----------cccc--------cee-eeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeE
Q 009373          367 ----------EANV--------LLV-ATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV  425 (536)
Q Consensus       367 ----------~~~~--------~~~-~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  425 (536)
                                ...+        ... ..+.+|...|++++|+|  .+|++++.||.|++||+.+....            
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~------------  523 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK------------  523 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------------
T ss_pred             CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce------------
Confidence                      0000        111 55678999999999976  79999999999999999875322            


Q ss_pred             EeeCCCeeeecc-ccccEEEEEecC------------CEEEEecCCCeEEEEeCCchh-hHHHHHHhhhcccchhHHHhh
Q 009373          426 IEVEPPQRMLHG-FECNLLSVDIGA------------DRIVCGGEEGIVRIWNFSQAF-EIERRARALRGIRLENRMRRR  491 (536)
Q Consensus       426 ~~~~~~~~~~~~-~~~~v~~~~~~~------------~~l~sg~~Dg~i~vW~~~~~~-~~~~~~~~~~~~~~~~~~~~~  491 (536)
                             ..+.+ |...|.++.+++            .+|++|+.||.|++|++.++. .+...          ......
T Consensus       524 -------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------~~h~~~  586 (615)
T 1pgu_A          524 -------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL----------NAHKDG  586 (615)
T ss_dssp             -------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET----------TSSTTC
T ss_pred             -------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh----------hcCccc
Confidence                   22344 777788888754            599999999999999999873 22211          112345


Q ss_pred             hhccccccCCCCcceeEeec
Q 009373          492 KLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       492 ~~~~~~~~~g~~~~~~~~~~  511 (536)
                      +.+++|+|+|. +++++.+.
T Consensus       587 v~~l~~s~~~~-l~s~~~d~  605 (615)
T 1pgu_A          587 VNNLLWETPST-LVSSGADA  605 (615)
T ss_dssp             EEEEEEEETTE-EEEEETTS
T ss_pred             eEEEEEcCCCC-eEEecCCc
Confidence            78899999999 88776543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.4e-35  Score=282.87  Aligned_cols=301  Identities=18%  Similarity=0.178  Sum_probs=209.6

Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeC------CCcEEEEEcccCccceec
Q 009373          165 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGT------DGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       165 ~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~  236 (536)
                      .+.+++ +++.++.+.....|++....+    ..|...|.++  +|||++|++|+.      |+.|++|+..++..    
T Consensus        12 d~g~~~-~~~~~~g~~~~~~w~~p~~~p----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~----   82 (357)
T 4g56_B           12 DLGTEN-LYFQSNGSSKGSAWGRPVTAP----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP----   82 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------
T ss_pred             CCCccc-eEEecCCCccccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc----
Confidence            344444 445555677889999865432    4577777655  599999999997      77899998766531    


Q ss_pred             ccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEee-----eccccEEEEe--ecCCEEEEe
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVL-----RHSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~v~~~~--~~~~~l~~~  308 (536)
                           .........+|...|.+++| ..+.+++++.||+|++||+.+++.....     .|...|.+++  |++++|+++
T Consensus        83 -----~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg  157 (357)
T 4g56_B           83 -----NESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG  157 (357)
T ss_dssp             -----CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred             -----ceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEE
Confidence                 12233445678999999999 4467888999999999999888754332     3788999887  889999998


Q ss_pred             c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEE
Q 009373          309 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  386 (536)
Q Consensus       309 ~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  386 (536)
                      + |+.|++||+++++.+..+. +|...|++++|+|++. ++++++.||.|++||++++..    ........|...++++
T Consensus       158 s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          158 GKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSV  232 (357)
T ss_dssp             ETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEE
T ss_pred             eCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccch
Confidence            8 8999999999999999886 6999999999999875 789999999999999988732    1222345678899999


Q ss_pred             EEcC---CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCe
Q 009373          387 AFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGI  460 (536)
Q Consensus       387 ~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~  460 (536)
                      +|+|   .+|++|+.|+.|++||++++.                   ....+.+|...|.++.++++   +|++|+.||+
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~-------------------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~  293 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKNPD-------------------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCT  293 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSCGG-------------------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             hhhhcccceEEEeecccceeEEECCCCc-------------------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE
Confidence            9986   589999999999999998742                   23456778888888887643   7999999999


Q ss_pred             EEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcccccc-CCCCcceeEeecccC
Q 009373          461 VRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS-KGGRTDQCSVAAKKN  514 (536)
Q Consensus       461 i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~  514 (536)
                      |+|||+.+++.+...     +      ....+.+++|+| +|..+++++.+.+..
T Consensus       294 i~iwd~~~~~~~~~~-----~------H~~~V~~vafsP~d~~~l~s~s~Dg~v~  337 (357)
T 4g56_B          294 VAVLDADFSEVFRDL-----S------HRDFVTGVAWSPLDHSKFTTVGWDHKVL  337 (357)
T ss_dssp             EEEECTTSCEEEEEC-----C------CSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred             EEEEECCCCcEeEEC-----C------CCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence            999999988654321     1      234577899998 788999988765443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=292.77  Aligned_cols=304  Identities=15%  Similarity=0.149  Sum_probs=234.5

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC----CceeeeeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED----GFSIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~  227 (536)
                      ..|...|++++|+|++.+|++|+.||.|++||+.+    .+.+..+.+|...|.++.  |+ +.+|++|+.||.|++||+
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~  143 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM  143 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence            36899999999999999999999999999999987    457888888988776665  76 889999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--e-CCEEEEEecCCeEEEEeCCCceEeEeee-c------cccEEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRALLKCLKVLR-H------SDWVYG  297 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~------~~~v~~  297 (536)
                      .++.......    .........+|...|.+++|  + +..|++++.||.|++||+++++.+..+. +      ...|.+
T Consensus       144 ~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          144 NKCTESPSNY----TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             TTTSSCTTTC----CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             CCCccccccc----cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            8763100000    01112234679999999999  3 5789999999999999999999988887 3      678888


Q ss_pred             Ee--ecC-CEEEEec-CC---cEEEEeCCCC-cEEEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          298 LA--PHD-TTVASTS-GS---DVYIWDTNSG-CLLTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       298 ~~--~~~-~~l~~~~-d~---~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                      +.  |++ .++++++ ++   .|++||++++ ..+..+..+|...|++++|+| ++.+|++++.||.|++||++++    
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~----  295 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA----  295 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC----
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC----
Confidence            87  665 5788777 67   9999999987 455555326999999999999 8999999999999999999988    


Q ss_pred             ccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCCCC---CCcee--eEEee------------
Q 009373          369 NVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRPTS---GKRVS--RVIEV------------  428 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~---~~~~~--~~~~~------------  428 (536)
                        ..+..+.+|...|++++|+|   .+|++++.||.|++||+.+.........   .....  .+...            
T Consensus       296 --~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (416)
T 2pm9_A          296 --EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV  373 (416)
T ss_dssp             --CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred             --ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence              67888889999999999986   6899999999999999987654332211   00000  00000            


Q ss_pred             CCCeeeecccccc--EEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          429 EPPQRMLHGFECN--LLSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       429 ~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      ... .....|...  ..++++++++|++|+.||.|+||++.++
T Consensus       374 ~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          374 FHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            000 111113333  4567777889999999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-35  Score=294.67  Aligned_cols=303  Identities=11%  Similarity=0.101  Sum_probs=218.7

Q ss_pred             ccccEEEEEEecCC---------CEEEE-------------------EeCCCcEEEEECCCCcee----eeeCCCCceEE
Q 009373          157 HTEAVLTVFVLASA---------KLLFT-------------------SGYDSIVRMWHLEDGFSI----ASSKPLGCTIR  204 (536)
Q Consensus       157 h~~~V~~v~~~~~~---------~~l~s-------------------gs~dg~v~iwd~~~~~~~----~~~~~~~~~v~  204 (536)
                      +.+.|.+|+|+|++         ++||+                   |+.|++|+|||+.+++..    ..+..|...|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            67889999999876         56665                   557899999999887642    33455666665


Q ss_pred             EE--ecC------CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeE
Q 009373          205 AV--AAD------KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTV  275 (536)
Q Consensus       205 ~~--~~~------~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i  275 (536)
                      ++  +|+      +.+|++|+.||+|++||+.++.......  .....+...+.+|.+.|++++| .++.|++|+.||+|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~--~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV  289 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF--KMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFV  289 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE--ECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc--eeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEE
Confidence            55  464      5799999999999999997653110000  0011234567899999999999 55799999999999


Q ss_pred             EEEeCCCce-EeEeee-ccccEEEE--e--ecC-CEEEEec-CCcEEEEeCCCCcEEEEEcccccc--ceEEEEEeCCCC
Q 009373          276 RVWDRALLK-CLKVLR-HSDWVYGL--A--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG--NTKSLARSHTGD  345 (536)
Q Consensus       276 ~iwd~~~~~-~~~~~~-~~~~v~~~--~--~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--~i~~l~~~~~~~  345 (536)
                      ++||++++. ....+. |...|.++  .  +++ .+|++++ |++|++||+++++.+..+. +|..  .|.+++|+|+++
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~  368 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIY  368 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTT
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcC
Confidence            999999764 334455 89999998  3  456 7889888 9999999999988766654 3543  588999999999


Q ss_pred             EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccC---------
Q 009373          346 FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG---------  414 (536)
Q Consensus       346 ~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~---------  414 (536)
                      .+++++.|++|++||++++      .++.++.+|.+.|++++|+|  .+|++|+.||+|++||+.......         
T Consensus       369 ~l~s~~~d~tv~lwd~~~~------~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~  442 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAA------FAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQK  442 (524)
T ss_dssp             EEEEECSSSEEEEEETTCT------TCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CC
T ss_pred             eEEEeCCCCcEEEEECccc------ccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCcccee
Confidence            9999999999999999987      55667789999999999987  689999999999999976431110         


Q ss_pred             -----CC--CCCCceeeEEe---------eCCCeeeeccccccEEEEEecCC-----EEEEecCCCeEEEEeCCc
Q 009373          415 -----RP--TSGKRVSRVIE---------VEPPQRMLHGFECNLLSVDIGAD-----RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       415 -----~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~-----~l~sg~~Dg~i~vW~~~~  468 (536)
                           ..  ........+..         -......+.+|...|.+++|+++     .+|+|+.||.|+||++.-
T Consensus       443 ~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          443 SLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                 00  00000000000         02234457788888888888876     899999999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-34  Score=277.26  Aligned_cols=238  Identities=18%  Similarity=0.212  Sum_probs=208.6

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC------ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGF  221 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~  221 (536)
                      ....+..|...|.+++|+|++.+|++|+.|+.+++|++...      .....+..|...+.++.  +++..|++|+.||+
T Consensus        98 ~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~  177 (354)
T 2pbi_B           98 KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT  177 (354)
T ss_dssp             EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCc
Confidence            46678889999999999999999999999999999998654      23455667877776654  88899999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY  296 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~  296 (536)
                      |++||++++.             ....+.+|...|.++++    +++.|++|+.||+|++||+++++++..+. |...|.
T Consensus       178 v~lwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~  244 (354)
T 2pbi_B          178 CALWDVESGQ-------------LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN  244 (354)
T ss_dssp             EEEEETTTCC-------------EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEEeCCCCe-------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE
Confidence            9999997753             56678899999999998    34799999999999999999999988887 899999


Q ss_pred             EEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373          297 GLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       297 ~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                      +++  |++.++++++ |++|++||+++++.+..+.. .+...+.+++|+|++.+|++|+.|+.|++||+.++      ..
T Consensus       245 ~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~------~~  318 (354)
T 2pbi_B          245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG------SR  318 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------SE
T ss_pred             EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC------ce
Confidence            887  7899999998 89999999999988776642 23457899999999999999999999999999887      56


Q ss_pred             eeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373          373 VATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  406 (536)
Q Consensus       373 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  406 (536)
                      +..+.+|.+.|++++|+|  .+|++|+.||+|++|+
T Consensus       319 ~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          319 VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            778889999999999987  6999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=278.31  Aligned_cols=303  Identities=16%  Similarity=0.201  Sum_probs=226.3

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeeee-------------CCCCceEEE
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASS-------------KPLGCTIRA  205 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~-------------~~~~~~v~~  205 (536)
                      .+.+.+........+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....+             .+|...|.+
T Consensus        25 ~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  104 (408)
T 4a11_B           25 RRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET  104 (408)
T ss_dssp             HHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEE
T ss_pred             ceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEE
Confidence            34444444445778899999999999999 9999999999999999999988655443             257788877


Q ss_pred             Ee--c-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-----eCCEEEEEecCCeEEE
Q 009373          206 VA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRV  277 (536)
Q Consensus       206 ~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~i~i  277 (536)
                      +.  + ++.+|++++.||.|++||+.++.             ... ...+...+.++.+     ++..+++++.||.|++
T Consensus       105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (408)
T 4a11_B          105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-------------TAD-VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL  170 (408)
T ss_dssp             EEECTTCTTCEEEEETTSEEEEEETTTTE-------------EEE-EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred             EEEccCCCcEEEEEeCCCeEEEeeCCCCc-------------cce-eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence            66  6 67799999999999999997753             222 2347788999988     2348999999999999


Q ss_pred             EeCCCceEeEeee-ccccEEEEe--ecCC-EEEEec-CCcEEEEeCCCCc-EEEEEc--------------cccccceEE
Q 009373          278 WDRALLKCLKVLR-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNSGC-LLTVVN--------------GAHVGNTKS  337 (536)
Q Consensus       278 wd~~~~~~~~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~i~i~d~~~~~-~~~~~~--------------~~~~~~i~~  337 (536)
                      ||+.+++.+..+. |...|.+++  |++. ++++++ |+.|++||++++. .+..+.              .+|...|.+
T Consensus       171 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  250 (408)
T 4a11_B          171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG  250 (408)
T ss_dssp             EESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred             EeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence            9999999888887 889999987  6776 577777 8999999998875 333331              358889999


Q ss_pred             EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-CCeEEEEeCCCcEEEEECCcccccCCC
Q 009373          338 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAAGDGKLSLIDVRKLLRSGRP  416 (536)
Q Consensus       338 l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~  416 (536)
                      ++|+|++++|++++.||.|++||+.++......................... ...+++++.|+.|++||+.++      
T Consensus       251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------  324 (408)
T 4a11_B          251 LCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG------  324 (408)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC------
T ss_pred             EEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC------
Confidence            9999999999999999999999999874211110000000111111222222 367888889999999999873      


Q ss_pred             CCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHH
Q 009373          417 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~  475 (536)
                                   .....+.+|...|.++.+++  .+|++|+.||.|++|++.+++.+...
T Consensus       325 -------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          325 -------------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             -------------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred             -------------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence                         33345667888887777665  49999999999999999998766543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=274.93  Aligned_cols=251  Identities=20%  Similarity=0.254  Sum_probs=205.5

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ...+|.+.|.+++|+|++++|++|+.|++|++|++.++  +.+..+.+|...|.++.  |++++|++|+.|++|++||+.
T Consensus        56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~  135 (345)
T 3fm0_A           56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD  135 (345)
T ss_dssp             ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence            34789999999999999999999999999999999876  45778899998887665  899999999999999999997


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE--eEeee-ccccEEEEe--ec
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC--LKVLR-HSDWVYGLA--PH  301 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~-~~~~v~~~~--~~  301 (536)
                      ++.          .......+.+|...|.+++|  ++.+|++|+.|++|++||..+++.  ...+. |...|.+++  |+
T Consensus       136 ~~~----------~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~  205 (345)
T 3fm0_A          136 EED----------EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS  205 (345)
T ss_dssp             TTS----------CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred             CCC----------CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence            642          12345667889999999999  678999999999999999987753  34454 889999887  88


Q ss_pred             CCEEEEec-CCcEEEEeCCCC---------------cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          302 DTTVASTS-GSDVYIWDTNSG---------------CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       302 ~~~l~~~~-d~~i~i~d~~~~---------------~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      +++|++++ |++|++||....               +++..+...|...|++++|+|++..|++++.|+.|++|+.....
T Consensus       206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~  285 (345)
T 3fm0_A          206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS  285 (345)
T ss_dssp             SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred             CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence            99999988 899999996322               23445544588999999999999999999999999999987653


Q ss_pred             ccccc---ceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccccc
Q 009373          366 TEANV---LLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       366 ~~~~~---~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      .....   .......+|...|++++|+|   .+|++|+.||+|++|++.+.++.
T Consensus       286 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          286 DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             CTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred             CcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence            22111   11234568999999999987   48999999999999999875443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-33  Score=279.04  Aligned_cols=288  Identities=19%  Similarity=0.204  Sum_probs=226.4

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-CCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      +....+|.+.+.+..+++++..+++++.|+.|++||+.+++....+.. |...|.++.  +++.+|++|+.||.|++||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           84 VLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             EEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            344457877755544444456788899999999999999988777655 666676654  89999999999999999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCC-CceEeEeee-ccccEEEEe--ecCC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA-LLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      .++.             ....+.+|...|.+++|+++.+++|+.||.|++||++ .......+. |...|.++.  +++.
T Consensus       164 ~~~~-------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  230 (401)
T 4aez_A          164 ESQT-------------KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL  230 (401)
T ss_dssp             TTCC-------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS
T ss_pred             cCCe-------------EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC
Confidence            7653             5667779999999999999999999999999999998 455566665 889999887  7889


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEc--CCCcEEEEEcccCccccccceeeeccCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      ++++++ |+.|++||+++++.+..+. +|...|.+++|+|++. ++++|+  .||.|++||+.++      ..+..+. +
T Consensus       231 ~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~------~~~~~~~-~  302 (401)
T 4aez_A          231 QLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG------ARVNTVD-A  302 (401)
T ss_dssp             EEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC------CEEEEEE-C
T ss_pred             EEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC------CEEEEEe-C
Confidence            999988 8999999999999988885 6999999999999774 566654  7999999999988      4555553 6


Q ss_pred             CCCeEEEEEcC--CeEEEE--eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEE
Q 009373          380 TGPVNSLAFEF--PWLVSA--AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIV  453 (536)
Q Consensus       380 ~~~v~~l~~~~--~~l~s~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~  453 (536)
                      ...|.+++|+|  .+++++  +.||.|++||+.+....                 ....+.+|...|.++.+++  .+|+
T Consensus       303 ~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-----------------~~~~~~~h~~~v~~~~~s~dg~~l~  365 (401)
T 4aez_A          303 GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-----------------KQVDIPAHDTRVLYSALSPDGRILS  365 (401)
T ss_dssp             SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-----------------EEEEEECCSSCCCEEEECTTSSEEE
T ss_pred             CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-----------------eEEEecCCCCCEEEEEECCCCCEEE
Confidence            67899999986  678874  48999999999763211                 1112456777777777654  5999


Q ss_pred             EecCCCeEEEEeCCchhhHHHHH
Q 009373          454 CGGEEGIVRIWNFSQAFEIERRA  476 (536)
Q Consensus       454 sg~~Dg~i~vW~~~~~~~~~~~~  476 (536)
                      +++.||.|++|++.+++.+....
T Consensus       366 s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          366 TAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EECTTSEEEEEECCC--------
T ss_pred             EEeCCCcEEEEECCCCccccccc
Confidence            99999999999999988776543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.8e-34  Score=273.11  Aligned_cols=304  Identities=18%  Similarity=0.249  Sum_probs=243.8

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccce
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~  234 (536)
                      |.++|.+++|+|+|++++++..++.+.+|............+|...|.++  ++++++|++++ ||.|++||+.++..  
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~--   84 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN--   84 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--
Confidence            56789999999999999999888887777766555554455777766555  58999999999 99999999976531  


Q ss_pred             ecccCcccccceEEee--CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce--EeEeee-ccccEEEEe--ecCCEE
Q 009373          235 FDISGSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~--~~~~~l  305 (536)
                              ......+.  +|...|.+++|  ++++|++++.||.|++||+.+++  ....+. |...|.++.  ++++++
T Consensus        85 --------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  156 (337)
T 1gxr_A           85 --------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC  156 (337)
T ss_dssp             --------CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             --------eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEE
Confidence                    12223333  78999999999  67899999999999999999887  344444 778888877  788898


Q ss_pred             EEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          306 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      ++++ ++.|++||+++++.+..+. +|...+.+++|+|++++|++++.||.|++||++++      ..+..+ .|...+.
T Consensus       157 ~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~  228 (337)
T 1gxr_A          157 FSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIF  228 (337)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEE
T ss_pred             EEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCC------ceEeee-cCCCceE
Confidence            8887 8999999999999988885 59999999999999999999999999999999887      344443 4788999


Q ss_pred             EEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCe
Q 009373          385 SLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGI  460 (536)
Q Consensus       385 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~  460 (536)
                      +++|+|  .+|++++.||.|++||+++..                    ...+.+|...+.++.+++  ++|++++.||.
T Consensus       229 ~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  288 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGMESSNVEVLHVNKPD--------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTSSC--------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCC--------------------eEEEcCCccceeEEEECCCCCEEEEecCCCc
Confidence            999986  699999999999999998642                    123456777787777764  59999999999


Q ss_pred             EEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEee
Q 009373          461 VRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       461 i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      |++|++.++..+...           .......+++|+|+|..+++++.+
T Consensus       289 i~~~~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~d  327 (337)
T 1gxr_A          289 LNAWRTPYGASIFQS-----------KESSSVLSCDISVDDKYIVTGSGD  327 (337)
T ss_dssp             EEEEETTTCCEEEEE-----------ECSSCEEEEEECTTSCEEEEEETT
T ss_pred             EEEEECCCCeEEEEe-----------cCCCcEEEEEECCCCCEEEEecCC
Confidence            999999988655211           112446789999999999887654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.3e-33  Score=272.36  Aligned_cols=281  Identities=12%  Similarity=0.102  Sum_probs=228.0

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eeeeeCCCCceEEEEe--cCCC-EEEEEeCCCcEEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKK-LLVAGGTDGFIHCW  225 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~vw  225 (536)
                      ....+|.+.|++++|+|++++|++|+.||.|++|++.++.   ....+..|...+.++.  ++++ +|++|+.||.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998877   3444557777776655  8899 99999999999999


Q ss_pred             Ec-ccCccceecccCcccccceEEeeC--CccCEEEEEEe-CCEEEEEecCCeEEEEeCCC---------ceEeEeeecc
Q 009373          226 RA-VEVLPHLFDISGSEKQNTQFRLWE--HEGPITSLALD-LTRIYSGSWDMTVRVWDRAL---------LKCLKVLRHS  292 (536)
Q Consensus       226 d~-~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~  292 (536)
                      |+ .++.              ...+.+  |...|.+++|. ++.|++++.|+.|++||+++         ++++..+.+.
T Consensus        85 d~~~~~~--------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T 1yfq_A           85 DLIGSPS--------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             CSSSSSS--------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             EeccCCc--------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC
Confidence            98 7652              355677  99999999996 78999999999999999988         7777777789


Q ss_pred             ccEEEEeecCCEEEEec-CCcEEEEeCCC-CcE-EEEEccccccceEEEEEeC-CCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          293 DWVYGLAPHDTTVASTS-GSDVYIWDTNS-GCL-LTVVNGAHVGNTKSLARSH-TGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       293 ~~v~~~~~~~~~l~~~~-d~~i~i~d~~~-~~~-~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                      ..|.+++..+..+++++ ++.|++||+++ +.. .......|...+.+++|+| +++++++|+.||.|++|+++......
T Consensus       151 ~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~  230 (342)
T 1yfq_A          151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             CceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc
Confidence            99999996555577766 89999999998 543 3333346888999999999 99999999999999999997761111


Q ss_pred             ccceeeeccCCCC---------CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc
Q 009373          369 NVLLVATWIPHTG---------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  437 (536)
Q Consensus       369 ~~~~~~~~~~h~~---------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (536)
                      .......+..|..         .|++++|+|  .+|++++.||.|++||+.++..                   ...+.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------------~~~~~~  291 (342)
T 1yfq_A          231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-------------------IKNFAK  291 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE-------------------EEECCC
T ss_pred             ccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH-------------------hhhhhc
Confidence            1134455556644         999999986  7899999999999999987422                   233556


Q ss_pred             c-cccEEEEEecCCEEEEecCCCe-EEEEe
Q 009373          438 F-ECNLLSVDIGADRIVCGGEEGI-VRIWN  465 (536)
Q Consensus       438 ~-~~~v~~~~~~~~~l~sg~~Dg~-i~vW~  465 (536)
                      | ...|.++.+++++|++|+.||. .+.|.
T Consensus       292 ~h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          292 FNEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             ccCCCceEecCCCCeEEEEecCCccccccc
Confidence            6 7888888888889999999998 44444

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.8e-34  Score=272.79  Aligned_cols=288  Identities=19%  Similarity=0.184  Sum_probs=214.5

Q ss_pred             CCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEe-eC-CccCEEEEEE--eCC
Q 009373          189 DGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WE-HEGPITSLAL--DLT  264 (536)
Q Consensus       189 ~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~--~~~  264 (536)
                      +.+.+..+.+|...|.++.+++.+|++|+.|++|++||+.++.           ......+ .+ |.+.|.+++|  +++
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~-----------~~~~~~~~~~~h~~~v~~v~~sp~~~   71 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDD-----------FTLIDVLDETAHKKAIRSVAWRPHTS   71 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSC-----------CEEEEEECTTCCCSCEEEEEECTTSS
T ss_pred             ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCC-----------eEEEEEEecCCccCCEEEEEECCCCC
Confidence            4566788899999999998777799999999999999987642           1122333 34 9999999999  678


Q ss_pred             EEEEEecCCeEEEEeCCC-------ceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCC----cEEEEEcc
Q 009373          265 RIYSGSWDMTVRVWDRAL-------LKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG----CLLTVVNG  329 (536)
Q Consensus       265 ~l~s~s~dg~i~iwd~~~-------~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~----~~~~~~~~  329 (536)
                      +|++|+.|++|++||+..       .+....+. |...|.+++  |++++|++++ |++|++||++..    +.+..+. 
T Consensus        72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-  150 (330)
T 2hes_X           72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-  150 (330)
T ss_dssp             EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-
T ss_pred             EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-
Confidence            999999999999999853       34555555 889999887  8899999998 999999999532    4455564 


Q ss_pred             ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC----eEEEEeCCCcEEEE
Q 009373          330 AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP----WLVSAAGDGKLSLI  405 (536)
Q Consensus       330 ~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~s~dg~i~vw  405 (536)
                      +|...|.+++|+|++.+|++|+.|++|++||...+.    ..++..+.+|.+.|.+++|+|.    +|++|+.|++|++|
T Consensus       151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            699999999999999999999999999999987652    1467788999999999999873    79999999999999


Q ss_pred             ECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEEecCC-EEEEecCCCeEEEEeCCchhh--HHHHHHhhhc
Q 009373          406 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFE--IERRARALRG  481 (536)
Q Consensus       406 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~--~~~~~~~~~~  481 (536)
                      |+++.....     .  ..    ......+.+ |...|.+++++++ +|++|+.||.|++|+..++..  ....      
T Consensus       227 ~~~~~~~~~-----~--~~----~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~------  289 (330)
T 2hes_X          227 KYMGDDEDD-----Q--QE----WVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKR------  289 (330)
T ss_dssp             EEEEECTTS-----C--EE----EEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEE------
T ss_pred             EecCCCccc-----c--ce----eEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecc------
Confidence            997642110     0  00    011122333 7788999988765 899999999999999876521  1000      


Q ss_pred             ccchhHHHh-hhhcccccc--CCCCcceeEeecc
Q 009373          482 IRLENRMRR-RKLQTEMSS--KGGRTDQCSVAAK  512 (536)
Q Consensus       482 ~~~~~~~~~-~~~~~~~~~--~g~~~~~~~~~~~  512 (536)
                         ...... ....++|+|  +|..+++++.+..
T Consensus       290 ---~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~  320 (330)
T 2hes_X          290 ---ALCHGVYEINVVKWLELNGKTILATGGDDGI  320 (330)
T ss_dssp             ---SCTTTTSCEEEEEEC-----CCEEEEETTSE
T ss_pred             ---ccccccceEEEEEEecCCCceEEEEecCCCc
Confidence               001111 456889999  6888998876544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-32  Score=277.04  Aligned_cols=297  Identities=21%  Similarity=0.301  Sum_probs=237.6

Q ss_pred             hhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe----cCCCEEE
Q 009373          139 EFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADKKLLV  214 (536)
Q Consensus       139 ~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~----~~~~~l~  214 (536)
                      .++.+.......+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|...|.++.    +++.+++
T Consensus       143 ~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~  221 (464)
T 3v7d_B          143 MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV  221 (464)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEE
T ss_pred             cEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEE
Confidence            34455555556788999999999999999887 999999999999999999999999999999887765    4678999


Q ss_pred             EEeCCCcEEEEEcccCccceec----------ccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCce
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFD----------ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK  284 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~  284 (536)
                      +|+.||+|++||+.++......          ............+.+|...|.++..+++++++|+.||.|++||+.+++
T Consensus       222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~  301 (464)
T 3v7d_B          222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK  301 (464)
T ss_dssp             EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred             EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            9999999999999876422110          000111123567789999999999999999999999999999999999


Q ss_pred             EeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          285 CLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       285 ~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      ++..+. |...|.++.  +++..+++++ |+.|++||+++++.+..+. +|...|.+++++  +.+|++|+.||.|++||
T Consensus       302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          302 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence            998887 888998887  7888999888 8999999999999999986 699999999997  58999999999999999


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  438 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (536)
                      +.+..      ..... .|...+..++|+  +.+|++|+ ||.|++||++++....                  ....+|
T Consensus       379 ~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~------------------~~~~~~  432 (464)
T 3v7d_B          379 ANDYS------RKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH------------------ANILKD  432 (464)
T ss_dssp             TTTCC------EEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEE------------------SCTTTT
T ss_pred             CCCCc------eeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEe------------------hhhccC
Confidence            98873      22222 255556666665  47888888 9999999998853221                  123456


Q ss_pred             cccEEEEEecCCE-EEEecCCCeEEEEe
Q 009373          439 ECNLLSVDIGADR-IVCGGEEGIVRIWN  465 (536)
Q Consensus       439 ~~~v~~~~~~~~~-l~sg~~Dg~i~vW~  465 (536)
                      ...|.+++++++. +++++.||.+.+|-
T Consensus       433 ~~~v~~v~~~~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          433 ADQIWSVNFKGKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             CSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence            7889999999884 55556677665543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.5e-33  Score=279.79  Aligned_cols=257  Identities=21%  Similarity=0.317  Sum_probs=223.5

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCC
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD  219 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d  219 (536)
                      ++.+.......+..+.+|.+.|.+++|  ++++|++|+.||+|++||+.+++.+..+.+|...+.++..+++.+++|+.|
T Consensus       155 i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d  232 (435)
T 1p22_A          155 IKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD  232 (435)
T ss_dssp             EEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETT
T ss_pred             EEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCC
Confidence            444444455567889999999999999  789999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEE
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL  298 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~  298 (536)
                      |.|++||+.++..          ......+.+|...|.+++++++++++|+.||.|++||+++++.+..+. |...|.++
T Consensus       233 g~i~vwd~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~  302 (435)
T 1p22_A          233 RSIAVWDMASPTD----------ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL  302 (435)
T ss_dssp             SCEEEEECSSSSC----------CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             CcEEEEeCCCCCC----------ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEE
Confidence            9999999977531          123356778999999999999999999999999999999999998888 88999999


Q ss_pred             eecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc---ccceee
Q 009373          299 APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA---NVLLVA  374 (536)
Q Consensus       299 ~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~~~  374 (536)
                      ..++.++++++ |+.|++||+++++.+..+. +|...|.+++|  ++.+|++|+.||.|++||+.++....   ...++.
T Consensus       303 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  379 (435)
T 1p22_A          303 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR  379 (435)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEE
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchhee
Confidence            99999999988 8999999999999999886 69999999999  78899999999999999997763211   112677


Q ss_pred             eccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCccc
Q 009373          375 TWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      .+.+|.+.|++++|++.+|++|+.||.|++||+.+..
T Consensus       380 ~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          380 TLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred             eccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence            8899999999999999999999999999999998753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.6e-33  Score=273.84  Aligned_cols=231  Identities=22%  Similarity=0.320  Sum_probs=199.1

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      ...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.++.  |++..|++|+.|++|++||+.++.    
T Consensus       123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~----  198 (393)
T 1erj_A          123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ----  198 (393)
T ss_dssp             CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----
T ss_pred             ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe----
Confidence            34599999999999999999999999999999999999999999887765  899999999999999999997753    


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEee--------eccccEEEEe--ecC
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVL--------RHSDWVYGLA--PHD  302 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~~v~~~~--~~~  302 (536)
                               ....+ .+...+.++++   ++.+|++|+.||+|++||+++++.+..+        .|...|.+++  +++
T Consensus       199 ---------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g  268 (393)
T 1erj_A          199 ---------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG  268 (393)
T ss_dssp             ---------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred             ---------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC
Confidence                     22223 35677999998   5679999999999999999999887765        2778899887  789


Q ss_pred             CEEEEec-CCcEEEEeCCCCc------------EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373          303 TTVASTS-GSDVYIWDTNSGC------------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~------------~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                      +++++++ |+.|++||+++..            ....+. +|...|.+++|+|++.+|++|+.||.|++||+.++     
T Consensus       269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-----  342 (393)
T 1erj_A          269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-----  342 (393)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-----
T ss_pred             CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----
Confidence            9999998 9999999997643            334443 69999999999999999999999999999999988     


Q ss_pred             cceeeeccCCCCCeEEEEEcC--------CeEEEEeCCCcEEEEECCc
Q 009373          370 VLLVATWIPHTGPVNSLAFEF--------PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~--------~~l~s~s~dg~i~vwd~~~  409 (536)
                       .++..+.+|...|.+++|++        ++|++|+.||+|++|++..
T Consensus       343 -~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          343 -NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             -CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             -eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence             67788899999999999964        5899999999999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.1e-35  Score=285.00  Aligned_cols=274  Identities=18%  Similarity=0.245  Sum_probs=217.6

Q ss_pred             HHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEE
Q 009373          106 EFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMW  185 (536)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iw  185 (536)
                      .+++..|.+......+.+.+...+.|..            ........+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus        68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~------------~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           68 KVYSLDWTPEKNWIVSASQDGRLIVWNA------------LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEET------------TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEEC------------CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            3455666543333333333333445543            2334578899999999999999999999999999999999


Q ss_pred             ECCCCc-------eeeeeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEe-----e
Q 009373          186 HLEDGF-------SIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-----W  250 (536)
Q Consensus       186 d~~~~~-------~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~  250 (536)
                      |+.+..       ....+.+|...+.++.  |+ +..|++|+.|++|++||+.++.             ....+     .
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-------------~~~~~~~~~~~  202 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-------------RISIFGSEFPS  202 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-------------EEEEECCCSSS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-------------EEEEeecccCC
Confidence            997532       3455678888777655  44 5679999999999999998764             22222     5


Q ss_pred             CCccCEEEEEE---eCCEEEEEecCCeEEEEeCC-CceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCc
Q 009373          251 EHEGPITSLAL---DLTRIYSGSWDMTVRVWDRA-LLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGC  322 (536)
Q Consensus       251 ~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~  322 (536)
                      +|...|.++++   +++.|++|+.||+|++||++ ..+.+..+. |...|.+++  |++.+|++++ |++|++||+++++
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            79999999999   56899999999999999997 456666666 899999887  8899999999 8999999999999


Q ss_pred             EEEEEccc------cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec----cCCCCCeEEEEEcC--
Q 009373          323 LLTVVNGA------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW----IPHTGPVNSLAFEF--  390 (536)
Q Consensus       323 ~~~~~~~~------~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~--  390 (536)
                      .+..+...      +...+++++|+|+|.+|++|+.||.|++||+..+      ..+..+    .+|.+.|++++|+|  
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~h~~~v~~l~~s~dg  356 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA------EMVLNLGTLQNSHEGRISCLGLSSDG  356 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC------CEEEEECCSCSSCCCCCCEEEECSSS
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC------ceEEEEecccCCCCCceEEEEECCCC
Confidence            88877531      1224899999999999999999999999999877      333333    68999999999986  


Q ss_pred             CeEEEEeCCCcEEEEECCcc
Q 009373          391 PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       391 ~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .+|++|+.||+|++|++...
T Consensus       357 ~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          357 SALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             SEEEEECTTSCEEEEECCSS
T ss_pred             CEEEEeeCCCCEEEEecCCC
Confidence            69999999999999998763

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.8e-34  Score=287.88  Aligned_cols=284  Identities=14%  Similarity=0.057  Sum_probs=204.9

Q ss_pred             eeeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCCce--eeeeCCCCceEEEEe--c-CCCEEEEEeCCCcEEE
Q 009373          151 IDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHC  224 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~v  224 (536)
                      .....+|...|+||+|+| ++++||+|+.||+|+|||+.++..  ...+.+|...|.++.  | ++++|++|+.||+|++
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            456778999999999999 467999999999999999987754  445568888887765  4 5789999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--  299 (536)
                      ||++++..           ........+...+.+++|  ++.+|++|+.||.|++||++.. .+..+. |...|.+++  
T Consensus       192 wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          192 QDFKGNIL-----------RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             EETTSCEE-----------EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEEC
T ss_pred             eeccCCce-----------eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeec
Confidence            99976421           111112234456778888  6789999999999999999754 444454 899999988  


Q ss_pred             ecCC-EEEEec-CCcEEEEeCCCCcEEEEE--ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          300 PHDT-TVASTS-GSDVYIWDTNSGCLLTVV--NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       300 ~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                      |++. ++++++ |+.|++||+++++....+  ..+|...|++++|+|+|.+|++|+.||.|++||+.++.      ....
T Consensus       260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~------~~~~  333 (435)
T 4e54_B          260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD------CPLG  333 (435)
T ss_dssp             TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS------SEEE
T ss_pred             CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc------cceE
Confidence            5554 677776 899999999987654333  23689999999999999999999999999999998873      3333


Q ss_pred             ccCCCC------CeEEEEEcC--CeEEEEe------------CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee
Q 009373          376 WIPHTG------PVNSLAFEF--PWLVSAA------------GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  435 (536)
Q Consensus       376 ~~~h~~------~v~~l~~~~--~~l~s~s------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (536)
                      +..|..      .+....|++  ..+++++            .++.|++||..++....                  ...
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~------------------~l~  395 (435)
T 4e54_B          334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC------------------QLY  395 (435)
T ss_dssp             ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE------------------EEC
T ss_pred             EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE------------------EEe
Confidence            333321      222334443  3444443            34679999998753221                  112


Q ss_pred             ccccccEE---EEEecCCEEEEecCCCeEEEEeCCchhh
Q 009373          436 HGFECNLL---SVDIGADRIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       436 ~~~~~~v~---~~~~~~~~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                      .+|...|.   .+++++.+|++|+ |+.|+||++++++.
T Consensus       396 ~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          396 DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            34444444   3455667888876 88999999998753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7.6e-33  Score=263.55  Aligned_cols=240  Identities=22%  Similarity=0.328  Sum_probs=208.1

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      .....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...+.++.  |++++|++|+.||.|++||
T Consensus        56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd  135 (312)
T 4ery_A           56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD  135 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred             ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence            35678899999999999999999999999999999999999999999999998887655  8899999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--e
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--P  300 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~  300 (536)
                      +.++.             ....+..|..+|.+++|  ++.+|++++.||.|++||+++++.+..+.  +...+..+.  |
T Consensus       136 ~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          136 VKTGK-------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  202 (312)
T ss_dssp             TTTCC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred             CCCCE-------------EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence            97653             55677889999999999  67899999999999999999998887764  556676665  8


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceE---EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK---SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~---~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                      +++++++++ |+.|++||+++++.+..+. +|.....   .....+++.+|++|+.||.|++||+.++      ..+..+
T Consensus       203 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~  275 (312)
T 4ery_A          203 NGKYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK------EIVQKL  275 (312)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC------CEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc------hhhhhh
Confidence            899999888 8999999999999988885 4655432   2233467889999999999999999888      678888


Q ss_pred             cCCCCCeEEEEEcC--CeEEEEe--CCCcEEEEECC
Q 009373          377 IPHTGPVNSLAFEF--PWLVSAA--GDGKLSLIDVR  408 (536)
Q Consensus       377 ~~h~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~  408 (536)
                      .+|...|.+++|+|  .+|++++  .|+.|++|+..
T Consensus       276 ~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          276 QGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999987  6888887  69999999864

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.3e-32  Score=271.44  Aligned_cols=273  Identities=20%  Similarity=0.268  Sum_probs=219.1

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee--CCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      .+..|+|+++ ++|++|. |++|+|||+.+|+....+  .+|...|.++  +|+|++|++|+.||+|++||+.++.    
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~----  180 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK----  180 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE----
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc----
Confidence            3577999974 6787775 999999999999887765  4666667655  5899999999999999999997753    


Q ss_pred             cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCce-EeEeee-ccccEEEEe--ecCCEEEEec-C
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLK-CLKVLR-HSDWVYGLA--PHDTTVASTS-G  310 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~--~~~~~l~~~~-d  310 (536)
                               ....+.+|...+.++++++..|++|+.|+.+++||..... .+..+. |...+..+.  +++.++++++ |
T Consensus       181 ---------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D  251 (420)
T 4gga_A          181 ---------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND  251 (420)
T ss_dssp             ---------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ---------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecc
Confidence                     5677889999999999999999999999999999988644 344555 888888776  8899999888 8


Q ss_pred             CcEEEEeCCCCcE----EEEEccccccceEEEEEeCCCC-EEEE--EcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          311 SDVYIWDTNSGCL----LTVVNGAHVGNTKSLARSHTGD-FLFT--GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       311 ~~i~i~d~~~~~~----~~~~~~~~~~~i~~l~~~~~~~-~l~t--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      +.+++||..+++.    +... ..|...|.+++|+|.+. ++++  |+.|++|++||+.++      .+...+.. ...+
T Consensus       252 ~~v~i~~~~~~~~~~~~~~~~-~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~~-~~~v  323 (420)
T 4gga_A          252 NLVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDA-HSQV  323 (420)
T ss_dssp             SCEEEEESSCCSSCSCCSEEE-CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEEC-SSCE
T ss_pred             ccceEEeeccccccceeeeee-cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeecc-ccce
Confidence            9999999988753    3344 36889999999999765 4444  468999999999988      55555554 4578


Q ss_pred             EEEEEcC--CeEEEEe--CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecC
Q 009373          384 NSLAFEF--PWLVSAA--GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGE  457 (536)
Q Consensus       384 ~~l~~~~--~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~  457 (536)
                      .++.|++  ..+++++  .||.|+|||+.++                   .....+.+|...|.+++++++  +|+|||.
T Consensus       324 ~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-------------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~  384 (420)
T 4gga_A          324 CSILWSPHYKELISGHGFAQNQLVIWKYPTM-------------------AKVAELKGHTSRVLSLTMSPDGATVASAAA  384 (420)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             eeeeecCCCCeEEEEEecCCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence            8888875  5666655  6999999999874                   334557889999999888654  9999999


Q ss_pred             CCeEEEEeCCchhhHHH
Q 009373          458 EGIVRIWNFSQAFEIER  474 (536)
Q Consensus       458 Dg~i~vW~~~~~~~~~~  474 (536)
                      ||+|+|||+.+.....+
T Consensus       385 D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          385 DETLRLWRCFELDPARR  401 (420)
T ss_dssp             TTEEEEECCSCSSCC--
T ss_pred             CCeEEEEECCCCCccch
Confidence            99999999987654443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-33  Score=299.34  Aligned_cols=238  Identities=12%  Similarity=0.051  Sum_probs=184.3

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEccc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      ....||.+.|++++|+|++++||+|+.||+|+||+..+++....+. |...|.++  ++ +++|++++.|++|++||+.+
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            3456999999999999999999999999999999998877665543 56666655  47 77999999999999999977


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeE-----------eee-ccccE
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK-----------VLR-HSDWV  295 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~-----------~~~-~~~~v  295 (536)
                      +.             ....+. |.+.|++++|  +++++++|+.||+|++||+.+++...           .+. |...|
T Consensus        89 ~~-------------~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V  154 (902)
T 2oaj_A           89 QK-------------VLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI  154 (902)
T ss_dssp             CS-------------EEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred             Cc-------------EEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence            53             333443 6789999999  77899999999999999999887641           112 77889


Q ss_pred             EEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEcc-----------------ccccceEEEEEeCCCCEEEEEcCCC
Q 009373          296 YGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG-----------------AHVGNTKSLARSHTGDFLFTGGEDG  354 (536)
Q Consensus       296 ~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-----------------~~~~~i~~l~~~~~~~~l~tg~~dg  354 (536)
                      .+++  |+ +..+++++ |+.| +||+++++.+..+..                 +|...|++++|+|+|.+|++|+.||
T Consensus       155 ~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg  233 (902)
T 2oaj_A          155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN  233 (902)
T ss_dssp             CEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence            9888  42 35777777 8999 999999998887752                 1357799999999999999999999


Q ss_pred             cEEEEEcccCccccccceeeecc-------------CCCCCeEEEEEc----C---CeEEEEeCC-----CcEEEEEC
Q 009373          355 AIHMYEIINDCTEANVLLVATWI-------------PHTGPVNSLAFE----F---PWLVSAAGD-----GKLSLIDV  407 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~-------------~h~~~v~~l~~~----~---~~l~s~s~d-----g~i~vwd~  407 (536)
                      .|++||++++..... ..+....             .|..+|++++|+    |   ..|++|+.|     ..+.+|++
T Consensus       234 ~i~lWd~~~g~~~~~-r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          234 SLVFWDANSGHMIMA-RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             CEEEEETTTCCEEEE-ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             eEEEEECCCCcEEEE-EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            999999988732100 0010011             245579999994    3   356777665     37888884

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.6e-33  Score=290.00  Aligned_cols=307  Identities=17%  Similarity=0.219  Sum_probs=252.8

Q ss_pred             cceeeeeCcccc-EEEEEEec--CCCEEEEEeCCCcEEEEECCCC--------ceeeeeCCCCceEEEEe--cCCCEEEE
Q 009373          149 YSIDVLYGHTEA-VLTVFVLA--SAKLLFTSGYDSIVRMWHLEDG--------FSIASSKPLGCTIRAVA--ADKKLLVA  215 (536)
Q Consensus       149 ~~~~~l~~h~~~-V~~v~~~~--~~~~l~sgs~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~--~~~~~l~s  215 (536)
                      .....+.+|.+. |++++|+|  ++++|++|+.||+|++||+.++        ..+..+..|...+.++.  |++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            567899999999 99999999  9999999999999999999755        66777788888777665  89999999


Q ss_pred             EeCC----CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCCeEEEEeCCCceEeEe
Q 009373          216 GGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       216 g~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      ++.+    +.|.+||.  +             .....+.+|...|.+++|  ++. .+++++.|+.|++||+.+++.+..
T Consensus       134 ~~~~~~~~~~v~~~d~--~-------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~  198 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDS--G-------------NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS  198 (615)
T ss_dssp             EECCSSCSEEEEETTT--C-------------CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred             eccCCCCccEEEEEEC--C-------------CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee
Confidence            9988    78888883  2             256677899999999999  444 899999999999999999999988


Q ss_pred             ee-ccc---cEEEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEcc---ccccceEEEEEeCCCCEEEEEcCCCcEE
Q 009373          289 LR-HSD---WVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGEDGAIH  357 (536)
Q Consensus       289 ~~-~~~---~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~tg~~dg~i~  357 (536)
                      +. |..   .|.++.  |+ ++++++++ |+.|++||+++++.+..+..   +|...|.+++|+ ++.+|++++.||.|+
T Consensus       199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~  277 (615)
T 1pgu_A          199 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIR  277 (615)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEE
T ss_pred             ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEE
Confidence            87 777   898887  77 88999888 89999999999999998844   699999999999 999999999999999


Q ss_pred             EEEcccCccccccceeeeccCC----CCCeEEEEE-cCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373          358 MYEIINDCTEANVLLVATWIPH----TGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  432 (536)
Q Consensus       358 iwd~~~~~~~~~~~~~~~~~~h----~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (536)
                      +||++++      ..+..+..+    ...+.++.| ++.++++++.||.|++||+.+..                   ..
T Consensus       278 ~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~-------------------~~  332 (615)
T 1pgu_A          278 VWDVTTS------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE-------------------VL  332 (615)
T ss_dssp             EEETTTT------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEE-------------------EE
T ss_pred             EEECCCC------cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCc-------------------EE
Confidence            9999987      455555555    467888888 56899999999999999998732                   23


Q ss_pred             eeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373          433 RMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       433 ~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                      ..+.+|...+.++.+ ++ +++|+.||.|++|++.   .+.            ........+++| +++..+++++.+..
T Consensus       333 ~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~---~~~------------~~~~~~v~~~~~-~~~~~l~~~~~d~~  394 (615)
T 1pgu_A          333 KTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS---SMH------------QDHSNLIVSLDN-SKAQEYSSISWDDT  394 (615)
T ss_dssp             EEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT---EEE------------CCCCSCEEEEEC-CSTTCCEEEETTTE
T ss_pred             EEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch---hhc------------CcccCceEEEEE-CCCcEEEEEeCCCC
Confidence            345678888888888 88 8999999999999887   110            112234567777 56777777665544


Q ss_pred             cC
Q 009373          513 KN  514 (536)
Q Consensus       513 ~~  514 (536)
                      ..
T Consensus       395 i~  396 (615)
T 1pgu_A          395 LK  396 (615)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.7e-34  Score=269.98  Aligned_cols=243  Identities=15%  Similarity=0.145  Sum_probs=191.7

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEEe--c--CCCEEEEEeCCCcEEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i~vw  225 (536)
                      ..+.+|.+.|++++|+|+|++|++|+.|++|+|||+.++.  .+..+.+|...|.++.  +  ++++|++|+.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            4677999999999999999999999999999999998874  4677889999998876  3  37899999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEEEEecCCeEEEEeCCCceE---eEeee-ccccEEE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWDRALLKC---LKVLR-HSDWVYG  297 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~iwd~~~~~~---~~~~~-~~~~v~~  297 (536)
                      |++++.           ......+.+|.+.|.+++|.    +.+|++|+.|++|++||+.++..   ...+. |...|.+
T Consensus        87 d~~~~~-----------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~  155 (316)
T 3bg1_A           87 REENGT-----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNA  155 (316)
T ss_dssp             CCSSSC-----------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCC
T ss_pred             ECCCCc-----------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcce
Confidence            987642           22455677899999999993    56899999999999999987632   22222 6677776


Q ss_pred             Ee--ec-----------------CCEEEEec-CCcEEEEeCCCC---cEEEEEccccccceEEEEEeCCC----CEEEEE
Q 009373          298 LA--PH-----------------DTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTG----DFLFTG  350 (536)
Q Consensus       298 ~~--~~-----------------~~~l~~~~-d~~i~i~d~~~~---~~~~~~~~~~~~~i~~l~~~~~~----~~l~tg  350 (536)
                      +.  |+                 +.+|++++ |+.|++||++.+   +.+..+ .+|...|++++|+|++    .+|++|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l-~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC-BCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec-ccCCCceEEEEecCCCCCCCceEEEE
Confidence            65  43                 35788888 899999999765   345555 4799999999999986    789999


Q ss_pred             cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      +.||+|++||+.+.....  .....+..|...|++++|+|  .+|++++.||.|++|+..
T Consensus       235 s~D~~v~iw~~~~~~~~~--~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSNT--WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ETTCEEEEEECSSTTCCC--CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCCCeEEEEEccCccccc--hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999997632100  11233457889999999987  699999999999999975

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-32  Score=266.17  Aligned_cols=299  Identities=13%  Similarity=0.081  Sum_probs=214.8

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEE-EEEeCCCcEEEEEc
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLL-VAGGTDGFIHCWRA  227 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sg~~dg~i~vwd~  227 (536)
                      .++..+.+|.+.|++++|+|+|++|++|+.|+ +++|++++++.......+...+.++.++++.+ ++|+.|++|++||+
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            35667789999999999999999999998775 78999998877766555556777888887776 67888899999999


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCc-eEeEeeeccccEEEEeecCCEEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLAPHDTTVA  306 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~l~  306 (536)
                      .++.             ....+. |...|.+++++++.++++. |+.|++||+.++ +.+..+.....+.++++  .+++
T Consensus        89 ~~~~-------------~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la  151 (355)
T 3vu4_A           89 VKKQ-------------DVSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLV  151 (355)
T ss_dssp             TTTE-------------EEEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEE
T ss_pred             CCCc-------------EEEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEeccCCceEEEEc--cEEE
Confidence            7763             333443 6779999999888777664 789999999988 66666655444555556  6666


Q ss_pred             Ee--c-CCcEEEEeCCCCc---------------E-EEEEccccccceEEEEEeCCCCEEEEEcCCCc-EEEEEcccCcc
Q 009373          307 ST--S-GSDVYIWDTNSGC---------------L-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCT  366 (536)
Q Consensus       307 ~~--~-d~~i~i~d~~~~~---------------~-~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~-i~iwd~~~~~~  366 (536)
                      .+  + +|.|++||+.+++               + +..+. +|.+.|++++|+|+|.+|++|+.||+ |++||++++  
T Consensus       152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--  228 (355)
T 3vu4_A          152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--  228 (355)
T ss_dssp             EEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--
T ss_pred             EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--
Confidence            53  4 8999999999875               1 45554 79999999999999999999999998 999999988  


Q ss_pred             ccccceeeecc-C-CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCce-eeEEe-eCC-Ceeee---c
Q 009373          367 EANVLLVATWI-P-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRV-SRVIE-VEP-PQRML---H  436 (536)
Q Consensus       367 ~~~~~~~~~~~-~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~---~  436 (536)
                          ..+..+. + |...|++++|+|  .+|++++.|++|++||++.............. ..... ... ....+   .
T Consensus       229 ----~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (355)
T 3vu4_A          229 ----VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDK  304 (355)
T ss_dssp             ----CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCT
T ss_pred             ----cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCC
Confidence                6677777 5 999999999987  79999999999999999865321110000000 00000 000 00000   1


Q ss_pred             cccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          437 GFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       437 ~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      .....+.++.+++.++++++.||.+++|++..+...
T Consensus       305 ~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~  340 (355)
T 3vu4_A          305 HVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM  340 (355)
T ss_dssp             TCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred             CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence            111245566666679999999999999999876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.2e-32  Score=261.97  Aligned_cols=246  Identities=16%  Similarity=0.274  Sum_probs=197.9

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ....+.+|...|.+++|+|++.++++|+.|++|++||+.+++.+..+.+|...|.++.  |++++|++|+.|++|++||+
T Consensus        68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            4678899999999999999999999999999999999999999999999998887665  89999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEeC------------CEEEEEecCCeEEEEeCCCceEeEeee-cccc
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL------------TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDW  294 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------------~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~  294 (536)
                      ....           ........+|...|.+++|.+            .+|++++.||+|++||. ..+....+. |...
T Consensus       148 ~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~  215 (343)
T 2xzm_R          148 LGEC-----------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN  215 (343)
T ss_dssp             SSCE-----------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC
T ss_pred             cCCc-----------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc
Confidence            6321           001111236889999999933            57999999999999995 455555555 8899


Q ss_pred             EEEEe--ecCCEEEEec-CCcEEEEeCCC-CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc--
Q 009373          295 VYGLA--PHDTTVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA--  368 (536)
Q Consensus       295 v~~~~--~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--  368 (536)
                      |.+++  |++++|++++ |+.|++||+.. ......+.  +...|.+++|+|++.++++| .|+.|++||+.+.....  
T Consensus       216 v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~  292 (343)
T 2xzm_R          216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC  292 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE
T ss_pred             ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE
Confidence            99887  8899999998 99999999944 44444443  55679999999999887655 57789999998763211  


Q ss_pred             ccc-----eeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          369 NVL-----LVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       369 ~~~-----~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .+.     ......+|...|++++|+|  .+|++|+.||.|++|+++++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            000     0111237889999999987  79999999999999998764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=267.36  Aligned_cols=284  Identities=14%  Similarity=0.220  Sum_probs=227.8

Q ss_pred             cceeeeeCccccEEEEEEecC---CCEEEEEeCCCcEEEEECCC-Ccee-eeeCCCCceEEEEe--cCCCEEEEEeCCCc
Q 009373          149 YSIDVLYGHTEAVLTVFVLAS---AKLLFTSGYDSIVRMWHLED-GFSI-ASSKPLGCTIRAVA--ADKKLLVAGGTDGF  221 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~---~~~l~sgs~dg~v~iwd~~~-~~~~-~~~~~~~~~v~~~~--~~~~~l~sg~~dg~  221 (536)
                      ..+..+.+|.+.|++++|+|+   |++|++|+.||.|++||+.+ +..+ ..+.+|...|.++.  |++++|++|+.||.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            357788999999999999999   59999999999999999997 5555 67778888887665  88999999999999


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEE
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYG  297 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~  297 (536)
                      |++||+.++.              ...+.+|...|.+++|    ++.+|++++.||.|++||+++++.+..+.....+.+
T Consensus       110 v~iwd~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  175 (368)
T 3mmy_A          110 AKMWDLSSNQ--------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC  175 (368)
T ss_dssp             EEEEETTTTE--------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE
T ss_pred             EEEEEcCCCC--------------ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE
Confidence            9999997652              3345679999999998    446799999999999999999999999887778888


Q ss_pred             EeecCCEEEEec-CCcEEEEeCCCCcEEEE-EccccccceEEEEEeCCCCE----EEEEcCCCcEEEEEcccCccccccc
Q 009373          298 LAPHDTTVASTS-GSDVYIWDTNSGCLLTV-VNGAHVGNTKSLARSHTGDF----LFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       298 ~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~i~~l~~~~~~~~----l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                      +.+.+..++++. ++.+.+||++....... ....+...+.++.+.+++..    +++|+.||.|++||++....   ..
T Consensus       176 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~---~~  252 (368)
T 3mmy_A          176 ADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP---AK  252 (368)
T ss_dssp             EEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH---HH
T ss_pred             EEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc---cc
Confidence            886666666666 89999999988754433 33334556677777666654    99999999999999987632   13


Q ss_pred             eeeeccCCCC------------CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc
Q 009373          372 LVATWIPHTG------------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  437 (536)
Q Consensus       372 ~~~~~~~h~~------------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (536)
                      .+..+.+|..            +|++++|+|  .+|++++.||.|++||++++.                   ....+.+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~-------------------~~~~~~~  313 (368)
T 3mmy_A          253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART-------------------KLKTSEQ  313 (368)
T ss_dssp             HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE-------------------EEEECCC
T ss_pred             cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc-------------------EEEEecC
Confidence            4455566665            799999987  699999999999999998742                   2234566


Q ss_pred             ccccEEEEEecCC--EEEEecCCCeEEEEeCCc
Q 009373          438 FECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       438 ~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~  468 (536)
                      |...+.++.++++  +|++|+.|+..+.|++..
T Consensus       314 ~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          314 LDQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             CSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CCCCceEEEECCCCCeEEEEecccccccccccC
Confidence            7778888877654  999999998766666543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.4e-32  Score=257.20  Aligned_cols=267  Identities=19%  Similarity=0.255  Sum_probs=214.9

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee--CCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      +.+|+|++++ +||+|. |++|+|||+++++.+..+  .+|...|.++  ++++++|++|+.||+|++||+++++     
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-----  100 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-----  100 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-----
Confidence            4679999875 777765 999999999999988766  4566667665  4899999999999999999997753     


Q ss_pred             ccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceE-eEeee-ccccEEEEe--ecCCEEEEec-CC
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKC-LKVLR-HSDWVYGLA--PHDTTVASTS-GS  311 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-~~~~v~~~~--~~~~~l~~~~-d~  311 (536)
                              ....+.+|...+.++.+++..+++++.++.+++|+...... +..+. |...+..+.  ++++++++++ |+
T Consensus       101 --------~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~  172 (318)
T 4ggc_A          101 --------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN  172 (318)
T ss_dssp             --------EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             --------eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc
Confidence                    56778899999999999999999999999999999887643 34444 778887776  7888999888 89


Q ss_pred             cEEEEeCCCCcEE----EEEccccccceEEEEEeCCCCE---EEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          312 DVYIWDTNSGCLL----TVVNGAHVGNTKSLARSHTGDF---LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       312 ~i~i~d~~~~~~~----~~~~~~~~~~i~~l~~~~~~~~---l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      .|++||+++++..    ... ..+.+.|.++.++|++..   +++++.++.|++||.....      .. ....+...+.
T Consensus       173 ~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~------~~-~~~~~~~~v~  244 (318)
T 4ggc_A          173 LVNVWPSAPGEGGWVPLQTF-TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA------CL-SAVDAHSQVC  244 (318)
T ss_dssp             CEEEEESSCBTTBSCCSEEE-CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC------EE-EEEECSSCEE
T ss_pred             ceeEEECCCCcccccceeee-cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc------cc-ccccceeeee
Confidence            9999999987532    222 357889999999997763   3467789999999988772      22 2345777899


Q ss_pred             EEEEcC--CeEEEEe--CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCC
Q 009373          385 SLAFEF--PWLVSAA--GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEE  458 (536)
Q Consensus       385 ~l~~~~--~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~D  458 (536)
                      .+.|.+  ..+++++  .|+.|++||++++                   .....+.+|...|.+++++++  +|+|||.|
T Consensus       245 ~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-------------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          245 SILWSPHYKELISGHGFAQNQLVIWKYPTM-------------------AKVAELKGHTSRVLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             EEEEETTTTEEEEEECTTTCCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eeeecccccceEEEEEcCCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            999976  5565544  7999999999874                   334557889999999888755  99999999


Q ss_pred             CeEEEEeCCch
Q 009373          459 GIVRIWNFSQA  469 (536)
Q Consensus       459 g~i~vW~~~~~  469 (536)
                      |+|+|||+.+.
T Consensus       306 ~~v~iWd~~~~  316 (318)
T 4ggc_A          306 ETLRLWRCFEL  316 (318)
T ss_dssp             TEEEEECCSCC
T ss_pred             CeEEEEECCCC
Confidence            99999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.6e-32  Score=254.53  Aligned_cols=245  Identities=18%  Similarity=0.213  Sum_probs=193.5

Q ss_pred             eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEE
Q 009373          194 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIY  267 (536)
Q Consensus       194 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~  267 (536)
                      ..+.+|...|.++.  +++++|++|+.|++|++||+.+..           ......+.+|.++|.+++|.    +++|+
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-----------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~   71 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-----------BCCCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-----------cEEEEEEccccCCeEEEEecCCCcCCEEE
Confidence            34678888886654  899999999999999999986431           23566788999999999992    67999


Q ss_pred             EEecCCeEEEEeCCCce--EeEeee-ccccEEEEe--ec--CCEEEEec-CCcEEEEeCCCCcE--EEEEccccccceEE
Q 009373          268 SGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKS  337 (536)
Q Consensus       268 s~s~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~i~d~~~~~~--~~~~~~~~~~~i~~  337 (536)
                      +|+.|++|++||+.+++  .+..+. |...|.+++  |+  +.+|++++ |+.|++||++++..  ...+ .+|...|.+
T Consensus        72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~-~~h~~~v~~  150 (297)
T 2pm7_B           72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS  150 (297)
T ss_dssp             EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE-ECCSSCEEE
T ss_pred             EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee-ecccCccce
Confidence            99999999999998874  344444 888999988  54  77888888 99999999987632  2333 469999999


Q ss_pred             EEEeCC-------------CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-----CeEEEEeCC
Q 009373          338 LARSHT-------------GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD  399 (536)
Q Consensus       338 l~~~~~-------------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d  399 (536)
                      ++|+|+             +++|++|+.|+.|++||+++...  .......+.+|...|.+++|+|     .+|++++.|
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D  228 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD  228 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence            999997             57999999999999999987631  1125567889999999999987     479999999


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee--ccccccEEEEEecC--CEEEEecCCCeEEEEeCCc
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML--HGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~  468 (536)
                      ++|++||+++.....                ....+  .+|...+.++++++  ++|++++.||.|++|+...
T Consensus       229 ~~v~iWd~~~~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          229 RTCIIWTQDNEQGPW----------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SCEEEEEESSTTSCC----------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             CcEEEEEeCCCCCcc----------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            999999987632110                00111  34566777776654  5999999999999999863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-31  Score=265.73  Aligned_cols=253  Identities=20%  Similarity=0.232  Sum_probs=214.5

Q ss_pred             hhhhccccCCccceee--eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEE
Q 009373          138 REFRSKTFLGRYSIDV--LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVA  215 (536)
Q Consensus       138 ~~~~~~~~~~~~~~~~--l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~s  215 (536)
                      ..++.|........+.  +.+|.+.|++|+|+|+|++|++|+.||+|+|||+.+++.+..+.+|...+.++++++..|++
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~s  204 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSS  204 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEE
Confidence            3344555443333444  45788999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEe----Eee
Q 009373          216 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCL----KVL  289 (536)
Q Consensus       216 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~----~~~  289 (536)
                      |+.|+.+++||....            ......+.+|...+..+.+  ++..+++++.|+.+++||..+++..    ...
T Consensus       205 gs~d~~i~~~d~~~~------------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~  272 (420)
T 4gga_A          205 GSRSGHIHHHDVRVA------------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF  272 (420)
T ss_dssp             EETTSEEEEEETTSS------------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE
T ss_pred             EeCCCceeEeeeccc------------ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee
Confidence            999999999998664            2355678899999999999  7789999999999999999876532    222


Q ss_pred             -eccccEEEEe--e-cCCEEEEe--c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc--CCCcEEEEE
Q 009373          290 -RHSDWVYGLA--P-HDTTVAST--S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMYE  360 (536)
Q Consensus       290 -~~~~~v~~~~--~-~~~~l~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~--~dg~i~iwd  360 (536)
                       .|...|.++.  | .+.+++++  + |+.|++||+.+++....+.  +...+.++.|+|+++.+++++  .||.|+|||
T Consensus       273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd  350 (420)
T 4gga_A          273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWK  350 (420)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEE
T ss_pred             cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEE
Confidence             3788888887  4 34565543  3 7999999999999998885  556899999999999888765  799999999


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +.++      .++.++.+|.+.|++++|+|  .+|++|+.||+|+|||+.+.
T Consensus       351 ~~~~------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          351 YPTM------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             TTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             CCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9988      78889999999999999986  69999999999999999764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.7e-32  Score=290.54  Aligned_cols=328  Identities=13%  Similarity=0.128  Sum_probs=250.7

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      .....+..+.+|.++|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...+.++.  |++..|++|+.||.|+
T Consensus        43 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  122 (814)
T 3mkq_A           43 ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK  122 (814)
T ss_dssp             TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence            34446789999999999999999999999999999999999999999999999988887665  8999999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGL  298 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~  298 (536)
                      +||+.++            ......+.+|...|.+++|+   ++.+++++.||+|++||+.+++....+.  +...+.++
T Consensus       123 vw~~~~~------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~  190 (814)
T 3mkq_A          123 LWNWENN------------WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV  190 (814)
T ss_dssp             EEEGGGT------------SEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred             EEECCCC------------ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence            9999764            23556677899999999994   4689999999999999998887777665  44677776


Q ss_pred             e--e--cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccccee
Q 009373          299 A--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       299 ~--~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                      .  |  ++.++++++ ++.|++||+.+++.+..+. +|...|.+++|+|++.+|++|+.||.|++||+.++      ..+
T Consensus       191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~------~~~  263 (814)
T 3mkq_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY------KVE  263 (814)
T ss_dssp             EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------SEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------cEE
Confidence            6  5  888999988 8999999999999988885 69999999999999999999999999999999887      677


Q ss_pred             eeccCCCCCeEEEEEcCC---eEEEEeCCCcEEEEECCcccccCCCCCCCceee----------EE--------------
Q 009373          374 ATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSR----------VI--------------  426 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~----------~~--------------  426 (536)
                      ..+..|...|.+++|+|+   .+++++.|+.+.+|++.................          ..              
T Consensus       264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (814)
T 3mkq_A          264 KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDE  343 (814)
T ss_dssp             EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred             EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCc
Confidence            888899999999999873   245555677799999875433222111110000          00              


Q ss_pred             eeCCCeeeeccccccE--EEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCc
Q 009373          427 EVEPPQRMLHGFECNL--LSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRT  504 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  504 (536)
                      ...........+...+  .+++++++++++++ ||.+.+|++......               ......+++|+|+|..+
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~---------------~~~~i~~~~~spdg~~l  407 (814)
T 3mkq_A          344 PLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK---------------AFGKCQDFVWGPDSNSY  407 (814)
T ss_dssp             CBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE---------------EEEECSEEEECTTSSCE
T ss_pred             cceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc---------------CCCceEEEEEeCCCCeE
Confidence            0001111122333333  44445555888887 889999997532110               01234567777777777


Q ss_pred             ceeE
Q 009373          505 DQCS  508 (536)
Q Consensus       505 ~~~~  508 (536)
                      +++.
T Consensus       408 a~~~  411 (814)
T 3mkq_A          408 ALID  411 (814)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-32  Score=295.19  Aligned_cols=349  Identities=11%  Similarity=0.080  Sum_probs=233.0

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      ..|...|.+++|+| +++|++++.|++|++||+.+++.+..+. |...|.++.  |++++|++|+.||+|++||+.++..
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            35889999999999 8899999999999999999999888875 445666554  8999999999999999999987642


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEEeC---CEEEEEecCCeEEEEeCCCceEeEeee-c-----------------
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR-H-----------------  291 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~-~-----------------  291 (536)
                      ..+.....  ......+.+|.++|.+++|++   ..+++|+.||+| +||+++++++..+. |                 
T Consensus       133 ~~~~i~~~--~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  209 (902)
T 2oaj_A          133 SSFKLDNL--QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEK  209 (902)
T ss_dssp             EEEEECCH--HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSC
T ss_pred             ccceeccc--cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccc
Confidence            11110000  000023467999999999954   589999999999 99999999888776 3                 


Q ss_pred             -cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEE--Ec--cc-------------cccceEEEEEeC----CC-C
Q 009373          292 -SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV--VN--GA-------------HVGNTKSLARSH----TG-D  345 (536)
Q Consensus       292 -~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~--~~--~~-------------~~~~i~~l~~~~----~~-~  345 (536)
                       ...|.+++  |++.+|++++ |+.|++||+++++++..  +.  ..             |...|++++|++    ++ .
T Consensus       210 h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~  289 (902)
T 2oaj_A          210 RTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTS  289 (902)
T ss_dssp             BCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEE
T ss_pred             cCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCE
Confidence             36788887  8899999998 89999999999987754  21  01             345799999954    32 4


Q ss_pred             EEEEEcCC-----CcEEEEEc-----------------------------------------------------------
Q 009373          346 FLFTGGED-----GAIHMYEI-----------------------------------------------------------  361 (536)
Q Consensus       346 ~l~tg~~d-----g~i~iwd~-----------------------------------------------------------  361 (536)
                      +|++|+.|     ..+.+|++                                                           
T Consensus       290 ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~  369 (902)
T 2oaj_A          290 LLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL  369 (902)
T ss_dssp             EEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEE
T ss_pred             EEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEE
Confidence            56666554     25666663                                                           


Q ss_pred             ------------ccCccccc-cceeeeccCCCCCeEEE----------------------------------EEcC--Ce
Q 009373          362 ------------INDCTEAN-VLLVATWIPHTGPVNSL----------------------------------AFEF--PW  392 (536)
Q Consensus       362 ------------~~~~~~~~-~~~~~~~~~h~~~v~~l----------------------------------~~~~--~~  392 (536)
                                  .++..... ......+..|...|+++                                  +|+|  ++
T Consensus       370 ~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~  449 (902)
T 2oaj_A          370 ILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTA  449 (902)
T ss_dssp             EETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEE
T ss_pred             EcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcE
Confidence                        11100000 00000112233444444                                  4444  68


Q ss_pred             EEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCeEEEEeCCchh
Q 009373          393 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       393 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      |++|+.|++|++||+.++....    .... .. .+.  .....+|...|.++++++  ++||+|+.||+|+||++.+++
T Consensus       450 laSgs~DgtVrlWd~~~g~~~~----~~~~-~~-~l~--~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~  521 (902)
T 2oaj_A          450 FITGHSNGSVRIYDASHGDIQD----NASF-EV-NLS--RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ  521 (902)
T ss_dssp             EEEEETTSEEEEEESSCCTTTT----TBCE-EE-EHH--HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred             EEEecCCCcEEEEECCCccccC----CceE-Ee-ech--hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence            9999999999999998752110    0000 00 000  000126777787777765  499999999999999998874


Q ss_pred             hHHHH----HHh-------------------------------hhcccchhHHHhhhhccccccCCCCcceeEeecccCC
Q 009373          471 EIERR----ARA-------------------------------LRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNP  515 (536)
Q Consensus       471 ~~~~~----~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  515 (536)
                      .....    ...                               +............+.+++|+||| .+|+++.+.+...
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~l  600 (902)
T 2oaj_A          522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLML  600 (902)
T ss_dssp             C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEE
T ss_pred             ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEE
Confidence            22110    000                               00011112234567889999999 9999887666555


Q ss_pred             cC
Q 009373          516 MN  517 (536)
Q Consensus       516 ~~  517 (536)
                      ++
T Consensus       601 wd  602 (902)
T 2oaj_A          601 ID  602 (902)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.8e-32  Score=263.20  Aligned_cols=292  Identities=15%  Similarity=0.171  Sum_probs=207.5

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----ceeeeeCCCCceEEEEe--c--CCCEEEEEeCCCcE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA--A--DKKLLVAGGTDGFI  222 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~--~--~~~~l~sg~~dg~i  222 (536)
                      ...+.+|.+.|++++|+|++++|++|+.||.|++||+.++    +....+.+|...|.++.  +  ++.+|++|+.||.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            4577899999999999999999999999999999999876    46677788999888776  5  58999999999999


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e--CCEEEEEecCCeEEEEeCCCceEeEeee--------
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCLKVLR--------  290 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------  290 (536)
                      ++||+.++....    ..........+.+|.+.|.+++|  +  +.+|++++.||.|++||+++++.+..+.        
T Consensus        84 ~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           84 KLWEEDPDQEEC----SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             EEEEECTTSCTT----SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             EEEecCCCcccc----cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence            999997753210    00111356677889999999999  4  7799999999999999998876544332        


Q ss_pred             ------ccccEEEEe--ec---CCEEEEec-CCcEEEEeCCCCcE--EEEEccccccceEEEEEeCCC----CEEEEEcC
Q 009373          291 ------HSDWVYGLA--PH---DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTG----DFLFTGGE  352 (536)
Q Consensus       291 ------~~~~v~~~~--~~---~~~l~~~~-d~~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~----~~l~tg~~  352 (536)
                            +...+.++.  |+   +..+++++ ++.+.+|+...++.  +..+ .+|...|++++|+|++    .+|++|+.
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec-CCCCcceeEEEECCCCCCcceEEEEEcC
Confidence                  455667776  54   77888887 78888888877765  4444 3699999999999998    89999999


Q ss_pred             CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEE----eCCCcEEEEECCcccccCCCCCCCceeeEE
Q 009373          353 DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA----AGDGKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~----s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                      ||.|++||++...      .......+...+......+  ..+..+    .....+.+|+...                 
T Consensus       239 dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  295 (351)
T 3f3f_A          239 DGRIRIFKITEKL------SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-----------------  295 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------------CCSEE-----------------
T ss_pred             CCeEEEEeCCCCc------CccccCCcccceeccCCCcccccccccccccccceeeeeccccc-----------------
Confidence            9999999998873      2222222222222222222  222222    2333444444333                 


Q ss_pred             eeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhH
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                        ......+.+|...|.++.++++  +|++|+.||.|++|++.++..+
T Consensus       296 --~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          296 --VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             --EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred             --ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence              1233456778888888887654  9999999999999999987544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.3e-32  Score=261.47  Aligned_cols=290  Identities=18%  Similarity=0.239  Sum_probs=223.2

Q ss_pred             CCCceeeeeCCCCceEEEEe--cC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e
Q 009373          188 EDGFSIASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D  262 (536)
Q Consensus       188 ~~~~~~~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~  262 (536)
                      ++.....++++|...|.+++  |+ +++|+||+.||+|++||+.+...        ....+...+.+|...|.+++|  +
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d   97 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--------NYGIPQRALRGHSHFVSDVVISSD   97 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS--------CSEEEEEEECCCSSCEEEEEECTT
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc--------ccceeeEEEeCCCCCEEEEEECCC
Confidence            33455668999999998876  65 67999999999999999976531        112345678899999999999  7


Q ss_pred             CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEE
Q 009373          263 LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSL  338 (536)
Q Consensus       263 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l  338 (536)
                      +.+|++++.|+.|++|+........... +...+....  +.+..+++++ |+.+++||+...........+|...+..+
T Consensus        98 g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~  177 (340)
T 4aow_A           98 GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV  177 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEE
T ss_pred             CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccce
Confidence            7899999999999999999888777766 444554444  7788888887 89999999988877666666799999999


Q ss_pred             EEeCCC--CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccC
Q 009373          339 ARSHTG--DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSG  414 (536)
Q Consensus       339 ~~~~~~--~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~  414 (536)
                      +|++++  .++++++.|+.|++||+++.      ..+..+.+|.++|++++|+|  .+|++|+.||.|++||+++.... 
T Consensus       178 ~~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-  250 (340)
T 4aow_A          178 RFSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-  250 (340)
T ss_dssp             EECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-
T ss_pred             EEccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-
Confidence            998865  57899999999999999988      67788899999999999986  69999999999999999874322 


Q ss_pred             CCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhh
Q 009373          415 RPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKL  493 (536)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (536)
                                        ..+.+ ...+.++.++++ ++++++.|+.|++||+.++..+......... .........+.
T Consensus       251 ------------------~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~h~~~v~  310 (340)
T 4aow_A          251 ------------------YTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVIS-TSSKAEPPQCT  310 (340)
T ss_dssp             ------------------EEEEC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--------CCCCCEE
T ss_pred             ------------------eeecC-CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEecccccee-eeccCCCCCEE
Confidence                              11222 235666776665 7778888999999999876554322111000 00111234567


Q ss_pred             ccccccCCCCcceeEeecc
Q 009373          494 QTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       494 ~~~~~~~g~~~~~~~~~~~  512 (536)
                      +++|+|+|+.+++++.+..
T Consensus       311 ~l~~s~dg~~l~sgs~Dg~  329 (340)
T 4aow_A          311 SLAWSADGQTLFAGYTDNL  329 (340)
T ss_dssp             EEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCEEEEEeCCCE
Confidence            8999999999998876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-31  Score=263.30  Aligned_cols=256  Identities=17%  Similarity=0.154  Sum_probs=217.2

Q ss_pred             hhccccCCccceeeeeC-ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeC
Q 009373          140 FRSKTFLGRYSIDVLYG-HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT  218 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~  218 (536)
                      ++.+..........+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...+.++..+++.+++|+.
T Consensus       115 v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~  194 (401)
T 4aez_A          115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSR  194 (401)
T ss_dssp             EEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred             EEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcC
Confidence            34444433334445554 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccE
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV  295 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v  295 (536)
                      ||.|++||+...            ......+.+|.+.|.+++|  ++..|++|+.||.|++||+.+++....+. |...|
T Consensus       195 dg~i~i~d~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v  262 (401)
T 4aez_A          195 SGAIHHHDVRIA------------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV  262 (401)
T ss_dssp             TSEEEEEETTSS------------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC
T ss_pred             CCCEEEEecccC------------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE
Confidence            999999999743            2356677899999999999  67899999999999999999998888876 88889


Q ss_pred             EEEe--ecC-CEEEEec---CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE--EcCCCcEEEEEcccCccc
Q 009373          296 YGLA--PHD-TTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT--GGEDGAIHMYEIINDCTE  367 (536)
Q Consensus       296 ~~~~--~~~-~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~  367 (536)
                      .+++  |++ .++++++   |+.|++||+.+++.+..+.  +...|.+++|+|++.++++  |+.||.|++||+.++.. 
T Consensus       263 ~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-  339 (401)
T 4aez_A          263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-  339 (401)
T ss_dssp             CEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE-
T ss_pred             EEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc-
Confidence            8887  544 5667654   8999999999999998884  7788999999999999999  55899999999988632 


Q ss_pred             cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccccc
Q 009373          368 ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       368 ~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                         .....+.+|...|.+++|+|  .+|++++.||.|++||+.++...
T Consensus       340 ---~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          340 ---TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             ---EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             ---eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence               34455779999999999986  69999999999999999876433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-31  Score=261.82  Aligned_cols=247  Identities=16%  Similarity=0.139  Sum_probs=206.0

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeeeeCCCCceEEEEe--cC--CCEEEEEeCCCcEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIH  223 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~  223 (536)
                      .+..+.+|.+.|++++|+|++++|++|+.||.|++||+.  +++.+..+.+|...|.++.  ++  +.+|++|+.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            467899999999999999999999999999999999998  5677888999999988776  44  89999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e--CCEEEEEecCCeEEEEeCCCceEeE--ee-eccccEE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCLK--VL-RHSDWVY  296 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~i~iwd~~~~~~~~--~~-~~~~~v~  296 (536)
                      +||+.++.           ......+.+|...|.+++|  +  +..|++++.||.|++||+.++....  .+ .|...|.
T Consensus        83 iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           83 IWKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             EEEcCCCc-----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceE
Confidence            99997752           2255667789999999999  4  7799999999999999998874332  23 3888899


Q ss_pred             EEe--e-------------cCCEEEEec-CCcEEEEeCCCCc----EEEEEccccccceEEEEEeCC---CCEEEEEcCC
Q 009373          297 GLA--P-------------HDTTVASTS-GSDVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHT---GDFLFTGGED  353 (536)
Q Consensus       297 ~~~--~-------------~~~~l~~~~-d~~i~i~d~~~~~----~~~~~~~~~~~~i~~l~~~~~---~~~l~tg~~d  353 (536)
                      ++.  |             ++.++++++ |+.|++||++++.    ....+ .+|...|++++|+|+   +.+|++++.|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            887  5             578888888 8999999998765    33444 369999999999999   8999999999


Q ss_pred             CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      |.|++||++.+.... ...+.....|...|++++|+|  .+|++++.||.|++||+..
T Consensus       231 g~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SCEEEEEESSTTSCC-EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CEEEEEeCCCCCccc-eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999998863211 123334456899999999986  6999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.7e-31  Score=250.14  Aligned_cols=238  Identities=21%  Similarity=0.246  Sum_probs=204.7

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      .+.+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++++++..+++|+.++.+++|+....  
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~--  139 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA--  139 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS--
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCC--
Confidence            345788999999999999999999999999999999999999999999999999999999999999999999998665  


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe-----eeccccEEEEe--ec-C
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-----LRHSDWVYGLA--PH-D  302 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~--~~-~  302 (536)
                                ......+.+|...+..+.+  ++.++++++.||+|++||+.+++....     ..+...|.++.  +. +
T Consensus       140 ----------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  209 (318)
T 4ggc_A          140 ----------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS  209 (318)
T ss_dssp             ----------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST
T ss_pred             ----------ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC
Confidence                      2355677899999999999  778999999999999999987754322     22667787776  33 3


Q ss_pred             CEEE--Eec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc--CCCcEEEEEcccCccccccceeeecc
Q 009373          303 TTVA--STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       303 ~~l~--~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      ..+.  +++ ++.|++||...........  +...+..+.|+|++..+++++  .||.|++||++++      .++.++.
T Consensus       210 ~~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~------~~~~~l~  281 (318)
T 4ggc_A          210 NVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------AKVAELK  281 (318)
T ss_dssp             TEEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------CEEEEEC
T ss_pred             cEEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC------cEEEEEc
Confidence            4443  344 6899999999998877763  778899999999999887654  7999999999988      6788999


Q ss_pred             CCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +|.+.|++++|+|  .+|++|+.||+|+|||+.+.
T Consensus       282 gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          282 GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999999999986  69999999999999999763

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=266.43  Aligned_cols=247  Identities=14%  Similarity=0.180  Sum_probs=191.7

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----------eeeeeCCCC------------ceEEE--EecCC
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSKPLG------------CTIRA--VAADK  210 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-----------~~~~~~~~~------------~~v~~--~~~~~  210 (536)
                      .|.+.|++++|+|++++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+  ++|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478999999999999999999999999999999877           477788887            55654  45777


Q ss_pred             --CEEEEEeCCCcEEEEEcccCcccee--cccCcc------------------------cccceEE-eeCCccCEEEEEE
Q 009373          211 --KLLVAGGTDGFIHCWRAVEVLPHLF--DISGSE------------------------KQNTQFR-LWEHEGPITSLAL  261 (536)
Q Consensus       211 --~~l~sg~~dg~i~vwd~~~~~~~~~--~~~~~~------------------------~~~~~~~-~~~h~~~v~~l~~  261 (536)
                        ..|++++.||+|++||+.++.....  ......                        ....... ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              7999999999999999976432100  000000                        0001112 3579999999999


Q ss_pred             --eCCEEEEEecCCeEEEEeCC-CceEeEee--------eccccEEEEe--ecC-CEEEEec-CCcEEEEeCCCCcE---
Q 009373          262 --DLTRIYSGSWDMTVRVWDRA-LLKCLKVL--------RHSDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCL---  323 (536)
Q Consensus       262 --~~~~l~s~s~dg~i~iwd~~-~~~~~~~~--------~~~~~v~~~~--~~~-~~l~~~~-d~~i~i~d~~~~~~---  323 (536)
                        ++++|++| .|+.|++||+. .++....+        .|...|.+++  |++ .++++++ |+.|++||+++++.   
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~  264 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR  264 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence              67889998 79999999998 44455432        3788899888  777 8888888 89999999999886   


Q ss_pred             -EEEEcccccc------------ceEEEEEeCCCCEEEEEcCCCcEEEEEccc-CccccccceeeeccCCCCC-------
Q 009373          324 -LTVVNGAHVG------------NTKSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGP-------  382 (536)
Q Consensus       324 -~~~~~~~~~~------------~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~-------  382 (536)
                       +..+. +|..            .|.+++|+|++++|++++. |.|++||++. +      .++..+.+|...       
T Consensus       265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~------~~~~~~~~~~~~~~~l~~~  336 (447)
T 3dw8_B          265 HSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN------RPVETYQVHEYLRSKLCSL  336 (447)
T ss_dssp             TCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS------SCSCCEESCGGGTTTHHHH
T ss_pred             eeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc------cccceeecccccccccccc
Confidence             66664 4654            8999999999999999999 9999999987 5      456667777542       


Q ss_pred             --------eEEEEEcC--CeEEEEeCCCcEEEEECCccc
Q 009373          383 --------VNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       383 --------v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  411 (536)
                              +..++|+|  .+|++|+.||.|++||+.+..
T Consensus       337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence                    33489986  699999999999999998754

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.5e-32  Score=256.91  Aligned_cols=243  Identities=18%  Similarity=0.186  Sum_probs=189.6

Q ss_pred             eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEEEE
Q 009373          196 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSG  269 (536)
Q Consensus       196 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~  269 (536)
                      +.+|...|.++.  +++++|++|+.|++|++||+.++.           ......+.+|.+.|.+++|.    +++|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~   77 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----------QILIADLRGHEGPVWQVAWAHPMYGNILASC   77 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEECCGGGSSCEEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEE
Confidence            457888887665  889999999999999999987642           12456788999999999992    6899999


Q ss_pred             ecCCeEEEEeCCCce--EeEeee-ccccEEEEe--ec--CCEEEEec-CCcEEEEeCCCCcEE--EEEccccccceEEEE
Q 009373          270 SWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCLL--TVVNGAHVGNTKSLA  339 (536)
Q Consensus       270 s~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~i~~l~  339 (536)
                      +.|++|++||+++++  ....+. |...|.+++  |+  +.+|++++ |+.|++||++.+...  .....+|...+.+++
T Consensus        78 s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           78 SYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             ETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             ECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            999999999998874  444454 888999887  55  67888888 999999999876432  223347899999999


Q ss_pred             EeCC-----------------CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC------CeEEEE
Q 009373          340 RSHT-----------------GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF------PWLVSA  396 (536)
Q Consensus       340 ~~~~-----------------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~  396 (536)
                      |+|+                 +.+|++|+.|+.|++||++...   ...++..+.+|...|++++|+|      .+|+++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~  234 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC  234 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred             EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence            9997                 4689999999999999996541   1235677889999999999987      479999


Q ss_pred             eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCeEEEEeCC
Q 009373          397 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       397 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~  467 (536)
                      +.||+|++||+.+....               ......+.+|...|.++++++  .+|++|+.||+|++|+..
T Consensus       235 s~D~~v~iw~~~~~~~~---------------~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          235 SQDGRVFIWTCDDASSN---------------TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             ETTCEEEEEECSSTTCC---------------CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cCCCeEEEEEccCcccc---------------chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999999998763110               001123455677788887765  499999999999999976

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-32  Score=269.76  Aligned_cols=288  Identities=14%  Similarity=0.214  Sum_probs=213.9

Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeeee-CCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373          166 VLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  241 (536)
Q Consensus       166 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  241 (536)
                      |+|++..+++++      .|+ .+++.+..+ .+|...|.++.  | ++.+|++|+.||+|++||+.+...       ..
T Consensus        35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~-------~~  100 (437)
T 3gre_A           35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV-------GE  100 (437)
T ss_dssp             GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT-------TC
T ss_pred             cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc-------Cc
Confidence            677887777665      388 557888888 88888887765  7 889999999999999999876210       00


Q ss_pred             cccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCC---CceEeEeee-------------ccccEEEEe----
Q 009373          242 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA---LLKCLKVLR-------------HSDWVYGLA----  299 (536)
Q Consensus       242 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~-------------~~~~v~~~~----  299 (536)
                      .......+ +|.+.|.+++|  +++.|++|+.||+|++||+.   +++......             +...+.++.    
T Consensus       101 ~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  179 (437)
T 3gre_A          101 VYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN  179 (437)
T ss_dssp             CCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC
T ss_pred             ccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc
Confidence            01122223 59999999999  67899999999999999995   444443332             234455554    


Q ss_pred             ecCCEEEEec-CCcEEEEeCCCCcEEEEEccc-cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          300 PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGA-HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       300 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      +++.++++++ |+.|++||+++++.+..+... |.+.|++++|+|++.+|++|+.||.|++||++++      .++..+.
T Consensus       180 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~  253 (437)
T 3gre_A          180 EEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWS  253 (437)
T ss_dssp             SSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEB
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEe
Confidence            5688888888 899999999999999988643 8899999999999999999999999999999987      5666665


Q ss_pred             -CCCCCeEEEEEcC------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCC-----eeeecc--ccccEE
Q 009373          378 -PHTGPVNSLAFEF------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP-----QRMLHG--FECNLL  443 (536)
Q Consensus       378 -~h~~~v~~l~~~~------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~v~  443 (536)
                       +|..+|++++|+|      .+|++|+.||.|++||++++.................+.+.     ...+.+  |...|.
T Consensus       254 ~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~  333 (437)
T 3gre_A          254 FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS  333 (437)
T ss_dssp             CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred             cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence             7888999998865      38999999999999999876433222111100000000000     001233  677777


Q ss_pred             EEEecCC-EEEEecCCCeEEEEeCCchhhHHH
Q 009373          444 SVDIGAD-RIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       444 ~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      ++.+++. +|++|+.||.|++||+.+++....
T Consensus       334 ~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          334 TISVSNDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             CEEEETTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             EEEECCceEEEecCCCCeEEEEECCCcccceE
Confidence            7777654 899999999999999999876543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.2e-32  Score=261.78  Aligned_cols=236  Identities=16%  Similarity=0.164  Sum_probs=201.8

Q ss_pred             ccccEEEEEEecC----CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEccc
Q 009373          157 HTEAVLTVFVLAS----AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       157 h~~~V~~v~~~~~----~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      |...|++++|+|+    +.+|++|+.||.|++||+.+++.+..+.+|...|.++.  | ++.+|++|+.||.|++||+.+
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            6688999999999    67999999999999999999999999999998888776  6 789999999999999999976


Q ss_pred             CccceecccCcccccceEEe---eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--------------
Q 009373          230 VLPHLFDISGSEKQNTQFRL---WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------------  290 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------------  290 (536)
                      +.             ....+   .+|...|.+++|  ++++|++++.||.|++||+++++....+.              
T Consensus       148 ~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  214 (366)
T 3k26_A          148 DT-------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPF  214 (366)
T ss_dssp             TE-------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCC
T ss_pred             Ce-------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccc
Confidence            53             33444   689999999999  67899999999999999999876543332              


Q ss_pred             ---------------ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcE--------------EEEEccccccceEEEEE
Q 009373          291 ---------------HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCL--------------LTVVNGAHVGNTKSLAR  340 (536)
Q Consensus       291 ---------------~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~--------------~~~~~~~~~~~i~~l~~  340 (536)
                                     |...|.++..+++++++++ |+.|++||+.++..              +..+. +|...|++++|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  293 (366)
T 3k26_A          215 ISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRF  293 (366)
T ss_dssp             CCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCC
T ss_pred             cceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEE
Confidence                           7788999997799999988 89999999988744              55554 68889999999


Q ss_pred             eCC--CCEEEEEcCCCcEEEEEcccCccccccceeeeccCC--CCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          341 SHT--GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH--TGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       341 ~~~--~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      +|+  +.+|++|+.||.|++||+.++....  .....+.+|  ...|++++|+|  .+|++++.||.|++||+.
T Consensus       294 s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          294 SMDFWQKMLALGNQVGKLYVWDLEVEDPHK--AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EECTTSSEEEEECTTSCEEEEECCSSSGGG--CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCCCCcEEEEEecCCcEEEEECCCCCCcc--ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999  9999999999999999998874221  234466677  79999999986  799999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=270.98  Aligned_cols=245  Identities=11%  Similarity=0.063  Sum_probs=194.3

Q ss_pred             eeeeCccccEEEEEEecC------CCEEEEEeCCCcEEEEECCCCce-----------eeeeCCCCceEEEEec-CCCEE
Q 009373          152 DVLYGHTEAVLTVFVLAS------AKLLFTSGYDSIVRMWHLEDGFS-----------IASSKPLGCTIRAVAA-DKKLL  213 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~------~~~l~sgs~dg~v~iwd~~~~~~-----------~~~~~~~~~~v~~~~~-~~~~l  213 (536)
                      .++.+|.+.|.+++|+|+      +.+||+|+.||+|++||+.++..           ...+.+|...|.++.. .+..|
T Consensus       201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~l  280 (524)
T 2j04_B          201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTV  280 (524)
T ss_dssp             EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEE
T ss_pred             EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeE
Confidence            457789999999999996      57999999999999999987642           2366788888888873 34689


Q ss_pred             EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEE--EE--eC-CEEEEEecCCeEEEEeCCCceEeEe
Q 009373          214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL--AL--DL-TRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       214 ~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      ++|+.||+|++||+.++.            .+...+.+|.+.|.++  .|  ++ .+|+||+.|++|++||++++++...
T Consensus       281 asgs~DgtV~lWD~~~~~------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~  348 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPE------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT  348 (524)
T ss_dssp             EEEETTSEEEEEETTBCS------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred             EEEeCCCEEEEEECCCCC------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence            999999999999997642            2345578999999999  45  44 6899999999999999998887666


Q ss_pred             ee-cc--ccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373          289 LR-HS--DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       289 ~~-~~--~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~  362 (536)
                      +. |.  ..|.+++  |++..+++++ |++|++||++++..+..+. +|.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus       349 ~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSRLHPMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred             cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence            54 43  2455554  8888888887 8899999999998877775 699999999999999999999999999999863


Q ss_pred             cCcccc--------------------------------------ccceeeeccCCCCCeEEEEEcCC-----eEEEEeCC
Q 009373          363 NDCTEA--------------------------------------NVLLVATWIPHTGPVNSLAFEFP-----WLVSAAGD  399 (536)
Q Consensus       363 ~~~~~~--------------------------------------~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~s~d  399 (536)
                      ......                                      ....+..+.+|...|++++|+|+     .+++|+.|
T Consensus       428 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~  507 (524)
T 2j04_B          428 RRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSA  507 (524)
T ss_dssp             SSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTT
T ss_pred             HhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccC
Confidence            321000                                      01234456789999999999985     89999999


Q ss_pred             CcEEEEECCc
Q 009373          400 GKLSLIDVRK  409 (536)
Q Consensus       400 g~i~vwd~~~  409 (536)
                      |.|+||++.-
T Consensus       508 g~vrlw~l~~  517 (524)
T 2j04_B          508 GLLTLEYLSL  517 (524)
T ss_dssp             SEEEEEECSC
T ss_pred             ceEEEEEccc
Confidence            9999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.8e-31  Score=254.76  Aligned_cols=247  Identities=17%  Similarity=0.193  Sum_probs=206.8

Q ss_pred             eeeeCccccEEEEEEecC---CCEEEEEeCCCcEEEEECCCCc-eeeeeCCCCceEEEE--------ecCCCEEEEEeCC
Q 009373          152 DVLYGHTEAVLTVFVLAS---AKLLFTSGYDSIVRMWHLEDGF-SIASSKPLGCTIRAV--------AADKKLLVAGGTD  219 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~---~~~l~sgs~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~--------~~~~~~l~sg~~d  219 (536)
                      ....+|...|.+++|+|+   +.+|++|+.||.|++||+.+++ .+..+.+|...+.++        +++++.|++|+.|
T Consensus        59 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d  138 (357)
T 3i2n_A           59 LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD  138 (357)
T ss_dssp             EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT
T ss_pred             eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC
Confidence            334589999999999998   6999999999999999999988 888899999999877        4788999999999


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCcc----CEEEEE----E--eCCEEEEEecCCeEEEEeCCCceEeEee
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG----PITSLA----L--DLTRIYSGSWDMTVRVWDRALLKCLKVL  289 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~----~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~  289 (536)
                      |.|++||+.++.            .....+..|.+    .|.+++    |  ++..+++++.||.|++||+++++.....
T Consensus       139 ~~i~vwd~~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  206 (357)
T 3i2n_A          139 GTVKVWDPRQKD------------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET  206 (357)
T ss_dssp             SCEEEECTTSCS------------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeCCCCC------------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec
Confidence            999999997753            13334444443    889988    3  7789999999999999999999987777


Q ss_pred             eccccEEEEe--e---cCCEEEEec-CCcEEEEeCCCCcEEEEEc----cccccceEEEEEeCCCC-EEEEEcCCCcEEE
Q 009373          290 RHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCLLTVVN----GAHVGNTKSLARSHTGD-FLFTGGEDGAIHM  358 (536)
Q Consensus       290 ~~~~~v~~~~--~---~~~~l~~~~-d~~i~i~d~~~~~~~~~~~----~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~i  358 (536)
                      .+...|.++.  |   ++.++++++ ++.|++||+++++....+.    .+|...|++++|+|++. +|++|+.||.|++
T Consensus       207 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  286 (357)
T 3i2n_A          207 NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL  286 (357)
T ss_dssp             ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE
Confidence            7899999988  5   788888888 8999999998876544332    26999999999999998 8999999999999


Q ss_pred             EEcccCcccc-------------ccceeeeccCCCCCeEEEEEcC--CeEE-EEeCCCcEEEEECCcc
Q 009373          359 YEIINDCTEA-------------NVLLVATWIPHTGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKL  410 (536)
Q Consensus       359 wd~~~~~~~~-------------~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~  410 (536)
                      ||++.+....             ....+..+.+|..+|++++|+|  .+|+ +++.||.|++||+.+.
T Consensus       287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             eecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            9998754221             1246777889999999999987  5676 8999999999999864

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-30  Score=244.24  Aligned_cols=246  Identities=16%  Similarity=0.188  Sum_probs=210.7

Q ss_pred             hccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC---ceeeeeCCCCceEEEEecCCCEEEEEe
Q 009373          141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVAADKKLLVAGG  217 (536)
Q Consensus       141 ~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~l~sg~  217 (536)
                      +.+...+......+.+|...|.+++|+|++++|++|+.||.|++|++.+.   +.+..+.+|...+.++.++++.+++|+
T Consensus        42 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~  121 (313)
T 3odt_A           42 RLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGS  121 (313)
T ss_dssp             EEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEE
T ss_pred             EEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEe
Confidence            33344445567888999999999999999999999999999999998754   567788899999999999999999999


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee--cc
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HS  292 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~  292 (536)
                      .||.|++||.               ......+..|...|.++.+   +++.+++++.||.|++||.  .+....+.  +.
T Consensus       122 ~d~~i~~~d~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~  184 (313)
T 3odt_A          122 WDKTAKVWKE---------------GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHN  184 (313)
T ss_dssp             TTSEEEEEET---------------TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCS
T ss_pred             CCCCEEEEcC---------------CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCc
Confidence            9999999992               2356677889999999998   6789999999999999994  44555554  78


Q ss_pred             ccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373          293 DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       293 ~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                      ..+.++.  +++. +++++ ++.|++||+++++.+..+. +|...|++++|+|++ .|++++.||.|++||+.++     
T Consensus       185 ~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~-----  256 (313)
T 3odt_A          185 DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG-----  256 (313)
T ss_dssp             SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC-----
T ss_pred             ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC-----
Confidence            8888887  6777 55555 9999999999999999886 699999999999999 5899999999999999988     


Q ss_pred             cceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccc
Q 009373          370 VLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLR  412 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~  412 (536)
                       ..+..+..|...|.+++|+| ..+++++.||.|++||+++...
T Consensus       257 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          257 -SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             -CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGGC
T ss_pred             -ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCce
Confidence             67788889999999999987 3588899999999999987543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.1e-30  Score=257.46  Aligned_cols=245  Identities=17%  Similarity=0.151  Sum_probs=207.5

Q ss_pred             ceeeeeCccccEEEEEEecC----C---CEEEEEeCCCcEEEEECCCCce-----eeeeCCC-----CceEE--EEe---
Q 009373          150 SIDVLYGHTEAVLTVFVLAS----A---KLLFTSGYDSIVRMWHLEDGFS-----IASSKPL-----GCTIR--AVA---  207 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~----~---~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~-----~~~v~--~~~---  207 (536)
                      .+..+.+|...|++++|+|+    +   ++|++|+.||.|++||+.+++.     +..+..|     ...+.  +++   
T Consensus        54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  133 (397)
T 1sq9_A           54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN  133 (397)
T ss_dssp             GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred             cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence            57788899999999999999    9   9999999999999999998887     7888777     46665  456   


Q ss_pred             -cCCCE-EEEEeCCCcEEEEEccc------CccceecccCcccccceEEe-------eCCccCEEEEEE--eCCEEEEEe
Q 009373          208 -ADKKL-LVAGGTDGFIHCWRAVE------VLPHLFDISGSEKQNTQFRL-------WEHEGPITSLAL--DLTRIYSGS  270 (536)
Q Consensus       208 -~~~~~-l~sg~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~l~~--~~~~l~s~s  270 (536)
                       +++.. |++|+.||.|++||+.+      +....        ......+       ..|...|.+++|  ++ .+++++
T Consensus       134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~  204 (397)
T 1sq9_A          134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN--------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF  204 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC--------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC
T ss_pred             CCCCceEEEEEeCCCcEEEEeCCccccccccceee--------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe
Confidence             67899 99999999999999977      32111        1111134       458899999999  56 999999


Q ss_pred             cCCeEEEEeCCCceEeEeee----c---cccEEEEe--ecCCEEEEec-C---CcEEEEeCCCCcEEEEEccc-------
Q 009373          271 WDMTVRVWDRALLKCLKVLR----H---SDWVYGLA--PHDTTVASTS-G---SDVYIWDTNSGCLLTVVNGA-------  330 (536)
Q Consensus       271 ~dg~i~iwd~~~~~~~~~~~----~---~~~v~~~~--~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~-------  330 (536)
                      .||.|++||+++++.+..+.    |   ...|.++.  +++.+|++++ |   +.|++||+++++.+..+. +       
T Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~  283 (397)
T 1sq9_A          205 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQA  283 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEEC-BC------
T ss_pred             CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceec-cCcccccc
Confidence            99999999999999888877    4   88899887  7899999888 7   899999999999998885 5       


Q ss_pred             ------cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc------CC---------------CCCe
Q 009373          331 ------HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI------PH---------------TGPV  383 (536)
Q Consensus       331 ------~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~h---------------~~~v  383 (536)
                            |...|.+++|+|++++|++|+.||.|++||++++      ..+..+.      +|               ...|
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v  357 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV  357 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC------ceeEEEecccCcccchhhhhccccccccccCCce
Confidence                  8999999999999999999999999999999988      5666666      77               9999


Q ss_pred             EEEEEcCC------------eEEEEeCCCcEEEEECCcc
Q 009373          384 NSLAFEFP------------WLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       384 ~~l~~~~~------------~l~s~s~dg~i~vwd~~~~  410 (536)
                      ++++|+|+            +|++++.||.|++||++++
T Consensus       358 ~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          358 FDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             eEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            99999864            8999999999999999763

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.3e-30  Score=275.77  Aligned_cols=241  Identities=22%  Similarity=0.318  Sum_probs=200.8

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..+.+.+|...|.+++|+|++++|+||+.||+|+|||+.++..+..+.+|...|.++.  ++++.|++|+.|++|++||.
T Consensus       422 ~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             ccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            3568899999999999999999999999999999999999999999999999887765  89999999999999999997


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEeC----CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL----TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--P  300 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~  300 (536)
                      .....          ........+|...|.+++|.+    ..+++|+.|++|++||+++++....+. |...|.+++  |
T Consensus       502 ~~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          502 LGECK----------YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP  571 (694)
T ss_dssp             TSCEE----------EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             CCCcc----------eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence            54311          001111246899999999933    479999999999999999999888887 899999887  8


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC-
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-  378 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-  378 (536)
                      +++++++++ |+.|++||+++++.+..+.  +...|.+++|+|++.++++++ |+.|++||++++.      .+..+.. 
T Consensus       572 dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~------~~~~~~~~  642 (694)
T 3dm0_A          572 DGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKS------IVEDLKVD  642 (694)
T ss_dssp             TSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTE------EEEEECCC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCC------Chhhhccc
Confidence            899999988 8999999999999887774  567899999999998887765 5569999998873      3322221 


Q ss_pred             ------------------CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          379 ------------------HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       379 ------------------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                                        +...+++++|+|  .+|++|+.||.|++||+..
T Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             CC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence                              222478999986  7999999999999999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.6e-31  Score=281.64  Aligned_cols=247  Identities=16%  Similarity=0.139  Sum_probs=202.8

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeeeeCCCCceEEEEe--cC--CCEEEEEeCCCcEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGCTIRAVA--AD--KKLLVAGGTDGFIHC  224 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~--~~~~~~~~~~~~~~v~~~~--~~--~~~l~sg~~dg~i~v  224 (536)
                      +.++.||.+.|++++|+|++++|++|+.||+|+|||+.  ++..+..+.+|...|.++.  ++  +++|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            45789999999999999999999999999999999998  5577888999999998776  55  899999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--e--CCEEEEEecCCeEEEEeCCCceEeE--ee-eccccEEE
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIYSGSWDMTVRVWDRALLKCLK--VL-RHSDWVYG  297 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~s~s~dg~i~iwd~~~~~~~~--~~-~~~~~v~~  297 (536)
                      ||+.++.           ......+.+|...|.+++|  +  ++.+++|+.||.|++||+.++....  .+ .|...|.+
T Consensus        82 wd~~~~~-----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~  150 (753)
T 3jro_A           82 WKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (753)
T ss_dssp             EEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEE
T ss_pred             EECCCCc-----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEE
Confidence            9997652           2355667789999999999  4  7899999999999999998874332  22 38888998


Q ss_pred             Ee--e-------------cCCEEEEec-CCcEEEEeCCCC----cEEEEEccccccceEEEEEeCC---CCEEEEEcCCC
Q 009373          298 LA--P-------------HDTTVASTS-GSDVYIWDTNSG----CLLTVVNGAHVGNTKSLARSHT---GDFLFTGGEDG  354 (536)
Q Consensus       298 ~~--~-------------~~~~l~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~i~~l~~~~~---~~~l~tg~~dg  354 (536)
                      +.  |             ++..+++++ ||.|++||++++    .....+. +|...|++++|+|+   +.+|++|+.||
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            87  4             467788877 899999999887    3444553 69999999999999   89999999999


Q ss_pred             cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .|++||++++.... .........|...|++++|+|  .+|++|+.||.|++||+.+.
T Consensus       230 ~I~iwd~~~~~~~~-~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          230 TCIIWTQDNEQGPW-KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CEEEEEESSSSSCC-BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEEEecCCCCCCcc-eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            99999998863211 123444567899999999986  69999999999999999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.98  E-value=2.3e-30  Score=252.57  Aligned_cols=253  Identities=16%  Similarity=0.161  Sum_probs=206.1

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee--eCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS--SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~--~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  225 (536)
                      .+..+.+|...|.+++|+|++++|++|+.||.|++||+.+++....  +..|...+.++.  +++++|++|+.||.|++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            5788899999999999999999999999999999999988875443  366777776655  889999999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeC------------------CCceE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR------------------ALLKC  285 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~------------------~~~~~  285 (536)
                      |+..+...         ........+|...|.+++|  ++++|++++.||.|++||+                  .+++.
T Consensus       124 d~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  194 (372)
T 1k8k_C          124 YFEQENDW---------WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  194 (372)
T ss_dssp             EEETTTTE---------EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             EecCCCcc---------eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence            99765310         0112233578999999999  6789999999999999995                  46677


Q ss_pred             eEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          286 LKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       286 ~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                      +..+. |...|.++.  +++.++++++ |+.|++||+++++.+..+. .|...|.+++|+|++.++++| .||.|++|++
T Consensus       195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~  272 (372)
T 1k8k_C          195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTY  272 (372)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred             eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEc
Confidence            77775 888899887  7888999888 8999999999999998886 688899999999999988888 8999999999


Q ss_pred             cc--Ccc--------------------------cccccee------eec-cCCCCCeEEEEEc-C-----CeEEEEeCCC
Q 009373          362 IN--DCT--------------------------EANVLLV------ATW-IPHTGPVNSLAFE-F-----PWLVSAAGDG  400 (536)
Q Consensus       362 ~~--~~~--------------------------~~~~~~~------~~~-~~h~~~v~~l~~~-~-----~~l~s~s~dg  400 (536)
                      .+  +.-                          .......      ..+ .+|..+|++++|. +     .+|++|+.||
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg  352 (372)
T 1k8k_C          273 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  352 (372)
T ss_dssp             ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             cCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCC
Confidence            88  310                          0000010      223 4899999999974 3     6999999999


Q ss_pred             cEEEEECCccccc
Q 009373          401 KLSLIDVRKLLRS  413 (536)
Q Consensus       401 ~i~vwd~~~~~~~  413 (536)
                      .|++||++++...
T Consensus       353 ~i~~W~~~~~~~~  365 (372)
T 1k8k_C          353 GMSIWDVRSLESA  365 (372)
T ss_dssp             EEEEEEHHHHHHH
T ss_pred             ceEEEEecChhHh
Confidence            9999999876433

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.6e-29  Score=246.11  Aligned_cols=256  Identities=18%  Similarity=0.229  Sum_probs=217.5

Q ss_pred             cCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCC---
Q 009373          145 FLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTD---  219 (536)
Q Consensus       145 ~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~d---  219 (536)
                      ......+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+. +...+.++  ++++..+++++.+   
T Consensus        61 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~  139 (369)
T 3zwl_B           61 SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMK  139 (369)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTT
T ss_pred             CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccC
Confidence            33445678899999999999999999999999999999999999999888876 55555554  5899999999999   


Q ss_pred             --CcEEEEEcccCccceecccCcccccceEEeeCCcc--CEEEEEE--eCCEEEEEecCCeEEEEeCCC-ceEeEeee-c
Q 009373          220 --GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG--PITSLAL--DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-H  291 (536)
Q Consensus       220 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~-~  291 (536)
                        |.|.+||+........-..  ........+..|.+  .+.+++|  +++.|++++.||.|++||+.+ .+....+. |
T Consensus       140 ~~g~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  217 (369)
T 3zwl_B          140 NPGSINIYEIERDSATHELTK--VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH  217 (369)
T ss_dssp             BCCEEEEEEEEECTTTCCEEE--ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECC
T ss_pred             CCCEEEEEEecCCccceeecc--cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecC
Confidence              9999999977642111000  11123445566776  9999999  778999999999999999998 77777777 8


Q ss_pred             cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC--------------
Q 009373          292 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG--------------  354 (536)
Q Consensus       292 ~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg--------------  354 (536)
                      ...|.++.  +++.+|++++ |+.|++||+++++.+..+.  +...+.+++|+|++.++++++.++              
T Consensus       218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  295 (369)
T 3zwl_B          218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKF  295 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------C
T ss_pred             CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcc
Confidence            88999887  7899998888 8999999999999998885  788999999999999999999988              


Q ss_pred             cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccc
Q 009373          355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      .+++||+.++      ..+..+.+|...|++++|+|  .+|++++.||.|++|++++..
T Consensus       296 ~i~~~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          296 EARFYHKIFE------EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEEETTTC------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             eeEEEecCCC------cchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            8999999888      67788899999999999986  699999999999999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-31  Score=262.13  Aligned_cols=301  Identities=7%  Similarity=-0.031  Sum_probs=218.7

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccce
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~  234 (536)
                      -...|.+++|+|||+++||++.|++|+  |...++.+   .+|...+.++.  |+|       .++.+.+|+.+..    
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----   77 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQN----   77 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSS----
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCc----
Confidence            357899999999999999999999999  75555444   67887776654  777       4555555553221    


Q ss_pred             ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccc-----cEEEEe--ecCCEE
Q 009373          235 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD-----WVYGLA--PHDTTV  305 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~--~~~~~l  305 (536)
                                ....+ .|...|.+++|  +|..|++++.||+|++||..+  ++..+.|..     .+.+++  |+|++|
T Consensus        78 ----------~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           78 ----------GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             ----------CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCE
T ss_pred             ----------eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEE
Confidence                      11112 45789999999  889999999999999999654  555555443     488877  999999


Q ss_pred             EEec-CCcEEEEeCCCCcE-------EEEEc---cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          306 ASTS-GSDVYIWDTNSGCL-------LTVVN---GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~~~-------~~~~~---~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                      ++++ ||+|++||+.++..       +.++.   .+|...|.+++|+|+|  +++++.|++|++||+..+...   ....
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---~~~~  219 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---PVSR  219 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC---CCEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc---ccee
Confidence            9999 89999999999853       56652   4688999999999999  888899999999999887310   1234


Q ss_pred             ec-cCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCC-
Q 009373          375 TW-IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GAD-  450 (536)
Q Consensus       375 ~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-  450 (536)
                      ++ .+|...|.+++|++..|++++ +++|++||+.+...                   .....+|...+.++.+  +++ 
T Consensus       220 tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~~-------------------~~~~~gh~~~V~~va~~~s~d~  279 (588)
T 2j04_A          220 MIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYSI-------------------SSLKTGSLENFHIIPLNHEKES  279 (588)
T ss_dssp             EEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTEE-------------------EEEECSCCSCCCEEEETTCSSC
T ss_pred             eecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCeE-------------------EEEEcCCCceEEEEEeeeCCCC
Confidence            45 478899999999978888887 69999999986421                   1122378888887877  666 


Q ss_pred             -EEEEecCCCeEEEEeCC-----c-hhhHHHHHHhhhcccchh---------HHHhhhhccccccCCCCcceeEeecccC
Q 009373          451 -RIVCGGEEGIVRIWNFS-----Q-AFEIERRARALRGIRLEN---------RMRRRKLQTEMSSKGGRTDQCSVAAKKN  514 (536)
Q Consensus       451 -~l~sg~~Dg~i~vW~~~-----~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~  514 (536)
                       .++++++||+ ++|.+.     . +..+...   .+......         .....+.++++||||..+|+++-= ..+
T Consensus       280 ~~La~a~edG~-klw~~d~~~~spd~~l~a~~---d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~i-~~~  354 (588)
T 2j04_A          280 TILLMSNKTSY-KVLLEDELHVTADNIIAPYL---EKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYDM-ERV  354 (588)
T ss_dssp             EEEEECSSCEE-EEEESSSEEEECCCSSHHHH---HHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEEE-ECS
T ss_pred             CEEEEEcCCCC-EEEeeccEEECCCceEEEEc---CCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEec-cCc
Confidence             8999999999 999973     2 2222111   11111110         012235679999999999976543 444


Q ss_pred             Cc
Q 009373          515 PM  516 (536)
Q Consensus       515 ~~  516 (536)
                      .+
T Consensus       355 ~~  356 (588)
T 2j04_A          355 AF  356 (588)
T ss_dssp             SC
T ss_pred             ee
Confidence            33

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.1e-31  Score=260.73  Aligned_cols=247  Identities=14%  Similarity=0.061  Sum_probs=190.0

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      ..+..+.+|.+.|++++|+|++++|++|+.|++|++||+.+++   ....+..|...+.++.  |++++|++|+.|+.|+
T Consensus        46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVIS  125 (377)
T ss_dssp             EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEE
T ss_pred             EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEE
Confidence            3567889999999999999999999999999999999999887   6777788988888776  7899999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeC-CccCEEEEEE--eCCEEEEEecCCeEEEEeCC------------------C
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWDMTVRVWDRA------------------L  282 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~------------------~  282 (536)
                      +||+.++..          ......+.+ |...|.+++|  ++++|++++.|++|++||+.                  .
T Consensus       126 iwd~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  195 (377)
T 3dwl_C          126 VCYFEQEND----------WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF  195 (377)
T ss_dssp             ECCC---------------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE
T ss_pred             EEEECCccc----------ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccch
Confidence            999976521          123455666 9999999999  66899999999999999985                  3


Q ss_pred             ceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcE----EEEEccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373          283 LKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL----LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  355 (536)
Q Consensus       283 ~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~----~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~  355 (536)
                      ++++..+.|...|.+++  |++++|++++ |+.|++||+.+++.    +..+. +|...|.+++|+|++++|++|+.++.
T Consensus       196 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~  274 (377)
T 3dwl_C          196 NTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNYSP  274 (377)
T ss_dssp             EEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSSSE
T ss_pred             hhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCCcE
Confidence            45555567888899887  8899898888 89999999999987    55564 69999999999999999999987765


Q ss_pred             EEEEEcccCccc--cc----------------------c----------------------ceeeeccCCCCCeEEEEEc
Q 009373          356 IHMYEIINDCTE--AN----------------------V----------------------LLVATWIPHTGPVNSLAFE  389 (536)
Q Consensus       356 i~iwd~~~~~~~--~~----------------------~----------------------~~~~~~~~h~~~v~~l~~~  389 (536)
                      + +|+.......  ..                      .                      ........|...|+++++.
T Consensus       275 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~  353 (377)
T 3dwl_C          275 I-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPY  353 (377)
T ss_dssp             E-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEE
T ss_pred             E-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEecc
Confidence            5 7766522100  00                      0                      0001122499999999975


Q ss_pred             C---C---eEEEEeCCCcEEEEEC
Q 009373          390 F---P---WLVSAAGDGKLSLIDV  407 (536)
Q Consensus       390 ~---~---~l~s~s~dg~i~vwd~  407 (536)
                      +   .   .|+||+.||.|++||+
T Consensus       354 ~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          354 AGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEETTEEEEEEEEETTSEEEEECC
T ss_pred             CCCCCceEEEEeecCCCcEEEecC
Confidence            3   2   6999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=2.3e-30  Score=253.91  Aligned_cols=293  Identities=11%  Similarity=0.122  Sum_probs=209.4

Q ss_pred             CCCCceeeeeCCCCceEEEEe--cCC-CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe-
Q 009373          187 LEDGFSIASSKPLGCTIRAVA--ADK-KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-  262 (536)
Q Consensus       187 ~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-  262 (536)
                      +.+......+.+|...|.++.  +++ ++|++|+.||.|++||+.++.           ........+|.+.|.+++|. 
T Consensus        60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~h~~~v~~~~~~~  128 (383)
T 3ei3_B           60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-----------KTSFIQGMGPGDAITGMKFNQ  128 (383)
T ss_dssp             HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-----------CEEEECCCSTTCBEEEEEEET
T ss_pred             ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-----------cceeeecCCcCCceeEEEeCC
Confidence            344555667788888887765  777 899999999999999997653           12223334799999999994 


Q ss_pred             --CCEEEEEecCCeEEEEeCCCceEeEeee----ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcccccc
Q 009373          263 --LTRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG  333 (536)
Q Consensus       263 --~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~  333 (536)
                        ++.|++++.|+.|++||+.+. ....+.    +...|.+++  +++.++++++ |+.|++||+ +++.+..+. +|..
T Consensus       129 ~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~  205 (383)
T 3ei3_B          129 FNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKA  205 (383)
T ss_dssp             TEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSS
T ss_pred             CCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCC
Confidence              478999999999999999864 444443    346788877  8899999988 899999999 567777775 6999


Q ss_pred             ceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCc
Q 009373          334 NTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       334 ~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~  409 (536)
                      .|.+++|+|+++ +|++|+.||.|++||+++.....  ..+..+ +|...|++++|+|   .+|++++.|+.|++||+++
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN--SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT--CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc--ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            999999999999 99999999999999999843211  334444 6999999999987   7999999999999999987


Q ss_pred             ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhH
Q 009373          410 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENR  487 (536)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~  487 (536)
                      .............  .................+..+.+  ++.+  +|+.||.|++||+.+++.+.......        
T Consensus       283 ~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~--------  350 (383)
T 3ei3_B          283 WSKPDQIIIHPHR--QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN--------  350 (383)
T ss_dssp             TTSCSEEEECCBC--CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT--------
T ss_pred             Ccccccccccccc--ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCC--------
Confidence            6443221100000  00000000000011123333443  4445  89999999999999887654322110        


Q ss_pred             HHhhhhccccccCCCCcceeE
Q 009373          488 MRRRKLQTEMSSKGGRTDQCS  508 (536)
Q Consensus       488 ~~~~~~~~~~~~~g~~~~~~~  508 (536)
                      .......++|+|+|..+++++
T Consensus       351 ~~~~~~~~~~s~~g~~l~s~s  371 (383)
T 3ei3_B          351 AAGIISLNKFSPTGDVLASGM  371 (383)
T ss_dssp             BCSCCCEEEECTTSSEEEEEE
T ss_pred             CCceEEEEEEecCccEEEEec
Confidence            112234569999999999884

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.9e-30  Score=253.26  Aligned_cols=282  Identities=13%  Similarity=0.143  Sum_probs=217.1

Q ss_pred             EEEEEEecCCC-EEEEEeCCCcEEEEECCCC----ceeeeeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCcc
Q 009373          161 VLTVFVLASAK-LLFTSGYDSIVRMWHLEDG----FSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       161 V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      ...++++|+.. ++++|+.||.|+||++...    ..+..+.+|...|.++.  | ++++|++|+.||+|++||+.++..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~  116 (402)
T 2aq5_A           37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL  116 (402)
T ss_dssp             SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred             CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence            34578888765 4446889999999999654    23456778998888776  6 889999999999999999977531


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEE--eC-CEEEEEecCCeEEEEeCCCceEeEee--e-ccccEEEEe--ecCCE
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVL--R-HSDWVYGLA--PHDTT  304 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~-~~~~v~~~~--~~~~~  304 (536)
                      ..      ........+.+|...|.+++|  ++ +.|++++.||+|++||+.+++.+..+  . |...|.+++  +++.+
T Consensus       117 ~~------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  190 (402)
T 2aq5_A          117 VL------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL  190 (402)
T ss_dssp             SS------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred             cc------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence            00      111356778899999999999  44 68999999999999999999999888  4 888999887  78888


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEccccccc-eEEEEEeCCCCEEEEE---cCCCcEEEEEcccCccccccceeeeccCC
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGN-TKSLARSHTGDFLFTG---GEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-i~~l~~~~~~~~l~tg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      |++++ |+.|++||+++++.+..+..+|.+. +.++.|+|++.+|++|   +.|+.|++||+++....    .......|
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~----~~~~~~~~  266 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP----LSLQELDT  266 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC----SEEEECCC
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC----ceEEeccC
Confidence            88888 9999999999999998884457765 8999999999999999   89999999999887321    11112357


Q ss_pred             CCCeEEEEEcC--CeEE-EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec--cccccEEEEEecCCEEEE
Q 009373          380 TGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH--GFECNLLSVDIGADRIVC  454 (536)
Q Consensus       380 ~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s  454 (536)
                      ...|.+++|+|  .+|+ +|+.||.|++||+.+...                  ....+.  .|...+.++.++++....
T Consensus       267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~------------------~~~~l~~~~~~~~v~~~~~sp~~~~~  328 (402)
T 2aq5_A          267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP------------------FLHYLSMFSSKESQRGMGYMPKRGLE  328 (402)
T ss_dssp             CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT------------------CEEEEEEECCSSCCSEEEECCGGGSC
T ss_pred             CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc------------------ceEeecccccCCcccceEEecccccc
Confidence            78899999986  5665 555799999999987421                  111122  244667777777662222


Q ss_pred             ecCCCeEEEEeCCchh
Q 009373          455 GGEEGIVRIWNFSQAF  470 (536)
Q Consensus       455 g~~Dg~i~vW~~~~~~  470 (536)
                      ++.|+.+++|++.++.
T Consensus       329 ~s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          329 VNKCEIARFYKLHERK  344 (402)
T ss_dssp             GGGTEEEEEEEEETTE
T ss_pred             eecceeEEEEEcCCCc
Confidence            3457799999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=4.4e-31  Score=263.44  Aligned_cols=285  Identities=15%  Similarity=0.140  Sum_probs=194.9

Q ss_pred             CCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEe
Q 009373          197 KPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGS  270 (536)
Q Consensus       197 ~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s  270 (536)
                      .+|...|.+++  | ++++|++|+.||+|++||+.++.           ......+.+|.+.|++++|   ++++|++|+
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence            34555555554  6 56799999999999999997653           2344556789999999999   467999999


Q ss_pred             cCCeEEEEeCCCceEeEeee---ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC
Q 009373          271 WDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  344 (536)
Q Consensus       271 ~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~  344 (536)
                      .||+|++||++++.......   +...+.+++  +++.+|++++ |+.|++||++. +.+..+. +|...|++++|+|++
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~~  262 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPCC  262 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTTC
T ss_pred             CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCCC
Confidence            99999999998765544333   333455554  8899999998 89999999975 4455554 699999999999988


Q ss_pred             C-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCc
Q 009373          345 D-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKR  421 (536)
Q Consensus       345 ~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~  421 (536)
                      . +|++|+.|+.|++||+++....   ..+....+|...|++++|+|  .+|++++.||.|+|||+.++...........
T Consensus       263 ~~~~~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~  339 (435)
T 4e54_B          263 DWFLATASVDQTVKIWDLRQVRGK---ASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPH  339 (435)
T ss_dssp             SSEEEEEETTSBCCEEETTTCCSS---SCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCC
T ss_pred             ceEEEEecCcceeeEEeccccccc---ceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccc
Confidence            6 7889999999999999887322   23344568999999999986  6999999999999999987543322111100


Q ss_pred             eeeEEeeCCCeeeeccccccEEEEE--ecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc-cc
Q 009373          422 VSRVIEVEPPQRMLHGFECNLLSVD--IGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT-EM  497 (536)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  497 (536)
                      ..  ...................+.  .++. .++++..++.|++||..++..+......         ....+.++ +|
T Consensus       340 ~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~---------~~~~v~s~~~f  408 (435)
T 4e54_B          340 RH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP---------ESSGISSLNEF  408 (435)
T ss_dssp             CC--CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS---------SCCCCCCEEEE
T ss_pred             cc--cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC---------CCCcEEEEEEE
Confidence            00  000000000011111222222  2333 3444455678999999998765432111         11223454 69


Q ss_pred             ccCCCCcceeE
Q 009373          498 SSKGGRTDQCS  508 (536)
Q Consensus       498 ~~~g~~~~~~~  508 (536)
                      +|+|..|++++
T Consensus       409 spdg~~lasg~  419 (435)
T 4e54_B          409 NPMGDTLASAM  419 (435)
T ss_dssp             CTTSSCEEEEC
T ss_pred             CCCCCEEEEEc
Confidence            99999998753

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=245.04  Aligned_cols=250  Identities=18%  Similarity=0.190  Sum_probs=197.6

Q ss_pred             ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CC
Q 009373          191 FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LT  264 (536)
Q Consensus       191 ~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~  264 (536)
                      +.+..+.+|...|.++.  +++++|++|+.||.|++||+....           ......+.+|.+.|.+++|.    ++
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~   70 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGT   70 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-----------ceeeeEecCCCCcEEEEEeCCCCCCC
Confidence            45566788888887765  889999999999999999986421           33566788999999999993    78


Q ss_pred             EEEEEecCCeEEEEeCCCce--EeEeee-ccccEEEEe--ec--CCEEEEec-CCcEEEEeCCCCcE--EEEEccccccc
Q 009373          265 RIYSGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCL--LTVVNGAHVGN  334 (536)
Q Consensus       265 ~l~s~s~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~i~d~~~~~~--~~~~~~~~~~~  334 (536)
                      +|++|+.||.|++||+.+++  ....+. |...|.++.  ++  +.++++++ |+.|++||++++..  ...+ .+|...
T Consensus        71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~  149 (379)
T 3jrp_A           71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIG  149 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE-ECCTTC
T ss_pred             EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe-cCCCCc
Confidence            99999999999999999987  455554 888999988  66  78888888 89999999998733  3333 368999


Q ss_pred             eEEEEEeC-------------CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-----CeEEEE
Q 009373          335 TKSLARSH-------------TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSA  396 (536)
Q Consensus       335 i~~l~~~~-------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~  396 (536)
                      |.+++|+|             ++.+|++|+.||.|++||++.+..  .......+.+|...|.+++|+|     .+|+++
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~  227 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  227 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc--ceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence            99999999             699999999999999999987632  1235567889999999999985     489999


Q ss_pred             eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCeEEEEeCCc
Q 009373          397 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       397 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~  468 (536)
                      +.||.|++||+++......              ........|...+.++.+++  .+|++++.||.|++|++..
T Consensus       228 ~~dg~i~iwd~~~~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          228 SQDRTCIIWTQDNEQGPWK--------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             ETTSCEEEEEESSTTSCCE--------------EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             eCCCEEEEEeCCCCCccce--------------eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            9999999999987421110              00011233566677766654  5999999999999999984

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=255.54  Aligned_cols=313  Identities=17%  Similarity=0.166  Sum_probs=228.5

Q ss_pred             CCcEEEEECCCCceeeeeCCCCceEEEEe--c-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccC
Q 009373          179 DSIVRMWHLEDGFSIASSKPLGCTIRAVA--A-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP  255 (536)
Q Consensus       179 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  255 (536)
                      ++.+++|+++.++....+.+|...|.++.  | ++++|++|+.||.|++||+.++....................+|...
T Consensus        22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (408)
T 4a11_B           22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS  101 (408)
T ss_dssp             HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred             cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence            45678888888888888889999888776  7 89999999999999999998764211000000000000011359999


Q ss_pred             EEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--e---cCCEEEEec-CCcEEEEeCCCCcEEEE
Q 009373          256 ITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--P---HDTTVASTS-GSDVYIWDTNSGCLLTV  326 (536)
Q Consensus       256 v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~---~~~~l~~~~-d~~i~i~d~~~~~~~~~  326 (536)
                      |.+++|   ++..|++++.||.|++||+.+++....+.+...+.++.  +   ++.++++++ ++.|++||+++++.+..
T Consensus       102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  181 (408)
T 4a11_B          102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI  181 (408)
T ss_dssp             EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEE
T ss_pred             EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeee
Confidence            999999   44689999999999999999999999998888888776  3   445888877 89999999999998888


Q ss_pred             EccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCcccc----------ccceeeeccCCCCCeEEEEEcC--CeE
Q 009373          327 VNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEA----------NVLLVATWIPHTGPVNSLAFEF--PWL  393 (536)
Q Consensus       327 ~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~~--~~l  393 (536)
                      +. +|...|.+++|+|++. +|++|+.||.|++||++......          .........+|...|.+++|+|  .+|
T Consensus       182 ~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  260 (408)
T 4a11_B          182 LQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL  260 (408)
T ss_dssp             EC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred             ec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence            85 6999999999999998 58999999999999998763110          0011222367999999999986  699


Q ss_pred             EEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe-cCCEEEEecCCCeEEEEeCCchhhH
Q 009373          394 VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-GADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       394 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ++++.||.|++||+.+............             ............. ....+++++.||.|++||+.++..+
T Consensus       261 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  327 (408)
T 4a11_B          261 LTVGTDNRMRLWNSSNGENTLVNYGKVC-------------NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI  327 (408)
T ss_dssp             EEEETTSCEEEEETTTCCBCCCCCCCCC-------------CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred             EEecCCCeEEEEECCCCccceecccccc-------------ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence            9999999999999998654332211100             0001111112222 2346777788999999999988765


Q ss_pred             HHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCC
Q 009373          473 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNP  515 (536)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  515 (536)
                      .....          ....+.+++|+|+|..+++++.+.....
T Consensus       328 ~~~~~----------~~~~v~~~~~s~~~~~l~s~~~dg~i~i  360 (408)
T 4a11_B          328 TMLKG----------HYKTVDCCVFQSNFQELYSGSRDCNILA  360 (408)
T ss_dssp             EEECC----------CSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             eeecc----------CCCeEEEEEEcCCCCEEEEECCCCeEEE
Confidence            43211          2244678999999999999876654433

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2e-29  Score=251.03  Aligned_cols=257  Identities=16%  Similarity=0.189  Sum_probs=208.2

Q ss_pred             CccceeeeeCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCC----------CceeeeeCCCCceEEEEe--cCCC-E
Q 009373          147 GRYSIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLED----------GFSIASSKPLGCTIRAVA--ADKK-L  212 (536)
Q Consensus       147 ~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~--~~~~-~  212 (536)
                      ++.......+|.+.|++++|+|+ +.+|++|+.||.|++|++.+          ...+..+.+|...+.+++  +++. +
T Consensus       117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred             CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence            44556677899999999999997 78999999999999999986          567777888887776554  7777 9


Q ss_pred             EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCc---eEe
Q 009373          213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALL---KCL  286 (536)
Q Consensus       213 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~---~~~  286 (536)
                      |++|+.||.|++|++.++...      .........+.+|...|.+++|   ++..|++++.||.|++||++++   +..
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKE------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBG------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             EEEEeCCCeEEEEeCCCCCCC------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence            999999999999999764210      0111224566789999999999   4578999999999999999987   455


Q ss_pred             Eeee-ccccEEEEe--ecCC-EEEEec-CCcEEEEeCCC-CcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcEEEE
Q 009373          287 KVLR-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDTNS-GCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMY  359 (536)
Q Consensus       287 ~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iw  359 (536)
                      ..+. |...|.+++  |++. ++++++ |+.|++||+++ +..+..+. +|...|++++|+|++. +|++++.||.|++|
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw  349 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVW  349 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred             eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence            5664 888999888  6565 677777 89999999998 45666665 6999999999999985 69999999999999


Q ss_pred             EcccCcccc--------ccceeeeccCCCCCeEEEEEcC--C-eEEEEeCCCcEEEEECCcc
Q 009373          360 EIINDCTEA--------NVLLVATWIPHTGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       360 d~~~~~~~~--------~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~  410 (536)
                      |+.......        ....+..+.+|...|++++|+|  . +|++++.||.|++|++...
T Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            998742211        1246677889999999999987  3 8999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.4e-29  Score=253.61  Aligned_cols=287  Identities=11%  Similarity=0.129  Sum_probs=202.3

Q ss_pred             CceEEE--EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCc------------cCEEEEEE--eC
Q 009373          200 GCTIRA--VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE------------GPITSLAL--DL  263 (536)
Q Consensus       200 ~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~--~~  263 (536)
                      ...|.+  ++|++++|++|+.||.|++||+.++.....  ...........+.+|.            +.|.+++|  ++
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS--HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C--CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc--ccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            445554  559999999999999999999977531100  0011122466778898            88999999  44


Q ss_pred             --CEEEEEecCCeEEEEeCCCceEe---------------------------------------Eee--eccccEEEEe-
Q 009373          264 --TRIYSGSWDMTVRVWDRALLKCL---------------------------------------KVL--RHSDWVYGLA-  299 (536)
Q Consensus       264 --~~l~s~s~dg~i~iwd~~~~~~~---------------------------------------~~~--~~~~~v~~~~-  299 (536)
                        ..|++++.||+|++||+.++...                                       ..+  .|...|.+++ 
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              68999999999999998765442                                       122  2888888887 


Q ss_pred             -ecCCEEEEecCCcEEEEeCCC-CcEEEEE------ccccccceEEEEEeCCC-CEEEEEcCCCcEEEEEcccCcccccc
Q 009373          300 -PHDTTVASTSGSDVYIWDTNS-GCLLTVV------NGAHVGNTKSLARSHTG-DFLFTGGEDGAIHMYEIINDCTEANV  370 (536)
Q Consensus       300 -~~~~~l~~~~d~~i~i~d~~~-~~~~~~~------~~~~~~~i~~l~~~~~~-~~l~tg~~dg~i~iwd~~~~~~~~~~  370 (536)
                       +++++++++.|+.|++||+++ ++.+..+      ..+|...|++++|+|++ .+|++|+.||.|++||++++....  
T Consensus       186 ~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--  263 (447)
T 3dw8_B          186 NSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD--  263 (447)
T ss_dssp             CTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC--
T ss_pred             cCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc--
Confidence             889999998899999999994 4444432      24689999999999998 999999999999999999873110  


Q ss_pred             ceeeeccCCCC------------CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373          371 LLVATWIPHTG------------PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  436 (536)
Q Consensus       371 ~~~~~~~~h~~------------~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (536)
                      ..+..+.+|..            .|.+++|+|  .+|++++. +.|++||+++...                  +...+.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~------------------~~~~~~  324 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR------------------PVETYQ  324 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS------------------CSCCEE
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc------------------ccceee
Confidence            11566677765            999999986  68999988 9999999986211                  111223


Q ss_pred             ccccc-----------------EEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHh--hh------c----------
Q 009373          437 GFECN-----------------LLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARA--LR------G----------  481 (536)
Q Consensus       437 ~~~~~-----------------v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~--~~------~----------  481 (536)
                      +|...                 ..++++++.+|++|+.||.|++||+.++..+.-....  .+      .          
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRK  404 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCC
T ss_pred             ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcc
Confidence            33211                 1466667779999999999999999987654200000  00      0          


Q ss_pred             ----ccchhHHHhhhhccccccCCCCcceeEe
Q 009373          482 ----IRLENRMRRRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       482 ----~~~~~~~~~~~~~~~~~~~g~~~~~~~~  509 (536)
                          .............++|+|+|..+|+++.
T Consensus       405 ~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~  436 (447)
T 3dw8_B          405 KDEISVDSLDFNKKILHTAWHPKENIIAVATT  436 (447)
T ss_dssp             TTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred             cccccccccccCCceeEEEECCCCCEEEEEec
Confidence                0000122345677999999999987643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.9e-29  Score=249.02  Aligned_cols=245  Identities=16%  Similarity=0.205  Sum_probs=199.7

Q ss_pred             ceeeeeCccccEEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------ceeeeeCCCCceEEEEe--cCC-CEEEEEeC
Q 009373          150 SIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDG-------FSIASSKPLGCTIRAVA--ADK-KLLVAGGT  218 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~-------~~~~~~~~~~~~v~~~~--~~~-~~l~sg~~  218 (536)
                      .+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++       +.+..+.+|...|.++.  |++ ++|++|+.
T Consensus        73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            4567889999999999999 8999999999999999999988       56778888988887765  776 69999999


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEe--eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-e-cc
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRL--WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-HS  292 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~  292 (536)
                      ||.|++||+.++.             ....+  .+|.+.|.+++|  ++++|++++.||.|++||+++++.+..+ . |.
T Consensus       153 dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          153 DNVILVWDVGTGA-------------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHE  219 (402)
T ss_dssp             TSCEEEEETTTTE-------------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSC
T ss_pred             CCEEEEEECCCCC-------------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCC
Confidence            9999999997653             45556  689999999999  7789999999999999999999998887 3 55


Q ss_pred             cc-EEEEe--ecCCEEEEe---c-CCcEEEEeCCCCcE-EEEEccccccceEEEEEeCCCCEEE-EEcCCCcEEEEEccc
Q 009373          293 DW-VYGLA--PHDTTVAST---S-GSDVYIWDTNSGCL-LTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEIIN  363 (536)
Q Consensus       293 ~~-v~~~~--~~~~~l~~~---~-d~~i~i~d~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~-tg~~dg~i~iwd~~~  363 (536)
                      .. +.++.  +++.+++++   + ++.|++||+++++. +......|...+.+++|+|++++|+ +|+.||.|++||+.+
T Consensus       220 ~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          220 GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence            43 55554  889999998   4 89999999998764 3333335778899999999999886 566899999999988


Q ss_pred             CccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +...  ...+..+. |..+|.+++|+|+..+.++.++.+++|++.+.
T Consensus       300 ~~~~--~~~l~~~~-~~~~v~~~~~sp~~~~~~s~~~~~~~~~l~~~  343 (402)
T 2aq5_A          300 EAPF--LHYLSMFS-SKESQRGMGYMPKRGLEVNKCEIARFYKLHER  343 (402)
T ss_dssp             STTC--EEEEEEEC-CSSCCSEEEECCGGGSCGGGTEEEEEEEEETT
T ss_pred             CCcc--eEeecccc-cCCcccceEEecccccceecceeEEEEEcCCC
Confidence            7310  12233332 67999999999843333457789999999763

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-28  Score=244.14  Aligned_cols=273  Identities=10%  Similarity=0.057  Sum_probs=209.0

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---eeeeeCCC-----------------------------------
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF---SIASSKPL-----------------------------------  199 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~---~~~~~~~~-----------------------------------  199 (536)
                      ..++.+++|+|+|++|+++ .++.|++||+.+|+   .+..+..+                                   
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999977666 47899999999998   55544322                                   


Q ss_pred             -------------------CceEEEE--ecCCCEE-EEEeCCCcEEEEEcc--cCccceecccCcccccceEEee--CCc
Q 009373          200 -------------------GCTIRAV--AADKKLL-VAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLW--EHE  253 (536)
Q Consensus       200 -------------------~~~v~~~--~~~~~~l-~sg~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~--~h~  253 (536)
                                         ...|.++  +|++++| ++|+.||.|++||+.  ++.             ....+.  .|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~~~~  149 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-------------VLKLRKRFCFS  149 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-------------CEEEEEEEECS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-------------eeeeeecccCC
Confidence                               2245554  5899986 899999999999997  442             333333  677


Q ss_pred             cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeE----eee-ccccEEEEe--ec---CCEEEEec-CCcEEEEeCCC
Q 009373          254 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK----VLR-HSDWVYGLA--PH---DTTVASTS-GSDVYIWDTNS  320 (536)
Q Consensus       254 ~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~-~~~~v~~~~--~~---~~~l~~~~-d~~i~i~d~~~  320 (536)
                      ..|.+++|  ++.+|++|+.||.|++|++.+++...    .+. |...|.++.  |+   +++|++++ |+.|++||+++
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            89999999  67899999999999999998877553    444 888999887  77   87898888 89999999999


Q ss_pred             CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc-----------------------
Q 009373          321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-----------------------  377 (536)
Q Consensus       321 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------------  377 (536)
                      ++.+..+..+|...|++++|+ ++.+|++|+.|+.|++||+.++.      .+..+.                       
T Consensus       230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (450)
T 2vdu_B          230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGK------NLSTFDYNSLIKPYLNDQHLAPPRFQNEN  302 (450)
T ss_dssp             TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCC------EEEEEECHHHHGGGCCTTSBC--------
T ss_pred             CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCc------Eeeeecchhhhhhhhhhcccccccccccc
Confidence            998888666799999999999 99999999999999999999873      333322                       


Q ss_pred             --CCCCCeEEEEEcC--CeEEEEe-CCCcEEEEEC--CcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC
Q 009373          378 --PHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDV--RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD  450 (536)
Q Consensus       378 --~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  450 (536)
                        .....|.+++|+|  .+|++++ .|+.|++|++  .+...         .       .....+.++ ..+.+++++++
T Consensus       303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~---------l-------~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGD---------L-------ALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTC---------E-------EEEEEEECS-SCEEEEEEETT
T ss_pred             cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCc---------e-------eeccEeccC-CceEEEEecCC
Confidence              2345789999986  6888888 8999999999  32100         0       112233445 66788888777


Q ss_pred             -EEEEecC-------CCeEEEEeCCc
Q 009373          451 -RIVCGGE-------EGIVRIWNFSQ  468 (536)
Q Consensus       451 -~l~sg~~-------Dg~i~vW~~~~  468 (536)
                       .+++.+.       +..|.+|.+..
T Consensus       366 ~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          366 EFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             cEEEEEecccCCCCCCcceEEEEEEc
Confidence             4444433       55688888754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.1e-29  Score=240.33  Aligned_cols=269  Identities=8%  Similarity=-0.013  Sum_probs=193.8

Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCccccc
Q 009373          165 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQN  244 (536)
Q Consensus       165 ~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~  244 (536)
                      .+.+++.+|++|+.||+|++||+.+++.+..+.  ...+.++..... +++|+.|++|++|+..... ..++...   ..
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~-~~~~~~~---~~  115 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQI-TILDSKT---NK  115 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEE-EEEETTT---CC
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCce-EEeecCC---cc
Confidence            445678899999999999999999998887765  233333332223 9999999999999876421 1122211   11


Q ss_pred             ceEE-eeCCccCEEEEEE----eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCEEEEec-CCcEE
Q 009373          245 TQFR-LWEHEGPITSLAL----DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVY  314 (536)
Q Consensus       245 ~~~~-~~~h~~~v~~l~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~  314 (536)
                      .... ..+|.+.|.++++    +++++++|+.||+|++||+++++......  +...+.+++  |++.++++|+ |+.|+
T Consensus       116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~  195 (343)
T 3lrv_A          116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD  195 (343)
T ss_dssp             EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred             eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence            1222 2367789999999    45789999999999999999999876664  555677776  8899999988 99999


Q ss_pred             EEeCCCCcEE-EEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE--EEEEcC-
Q 009373          315 IWDTNSGCLL-TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEF-  390 (536)
Q Consensus       315 i~d~~~~~~~-~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~-  390 (536)
                      +||+++++.+ ..+..+|.+.|++++|+|++.+|++++ |+.|++||++.....   ..+..+..|...+.  +++|+| 
T Consensus       196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT---LAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC---BSSCCCBC-----CCEEEEECTT
T ss_pred             EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc---eeecccccccccccceEEEECCC
Confidence            9999999887 677544999999999999999999999 559999999987321   12222233445554  699986 


Q ss_pred             -CeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe-----cCCEEEEecCCCeEEE
Q 009373          391 -PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-----GADRIVCGGEEGIVRI  463 (536)
Q Consensus       391 -~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~sg~~Dg~i~v  463 (536)
                       .+|++++. |+.|++|++.+..+.+..                       ..+..+.+     +...+++++.||.+++
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  328 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDKKTKNWTK-----------------------DEESALCLQSDTADFTDMDVVCGDGGIAA  328 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCSEEE-----------------------EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred             CCEEEEecCCCCcEEEEEEcccccceEe-----------------------cCceeEecCccccccceeEEEecCCceEE
Confidence             79999998 999999999764322110                       11222222     3348888888888888


Q ss_pred             EeCC
Q 009373          464 WNFS  467 (536)
Q Consensus       464 W~~~  467 (536)
                      +-..
T Consensus       329 ~~~~  332 (343)
T 3lrv_A          329 ILKT  332 (343)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=2.9e-28  Score=237.09  Aligned_cols=297  Identities=13%  Similarity=0.170  Sum_probs=216.2

Q ss_pred             EEECCCCceeeeeCCCCceEEEEe--cC---CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEE
Q 009373          184 MWHLEDGFSIASSKPLGCTIRAVA--AD---KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITS  258 (536)
Q Consensus       184 iwd~~~~~~~~~~~~~~~~v~~~~--~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  258 (536)
                      .|+....+.+..+.+|...|.++.  |+   +++|++|+.||.|++||+.+..           ......+.+|.+.|.+
T Consensus        23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~   91 (368)
T 3mmy_A           23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----------QTIPKAQQMHTGPVLD   91 (368)
T ss_dssp             CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----------CEEEEEEEECSSCEEE
T ss_pred             cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----------ceeEEEeccccCCEEE
Confidence            345566677888899999888876  66   5899999999999999997621           2233667789999999


Q ss_pred             EEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe----ecCCEEEEec-CCcEEEEeCCCCcEEEEEcccc
Q 009373          259 LAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA----PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH  331 (536)
Q Consensus       259 l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~  331 (536)
                      ++|  ++++|++++.||.|++||+.+++......|...|.++.    +++.++++++ |+.|++||+++++.+..+.  .
T Consensus        92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~  169 (368)
T 3mmy_A           92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--L  169 (368)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--C
T ss_pred             EEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--c
Confidence            999  67899999999999999999999988888999999886    4677788887 8999999999999888885  3


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE--cCC----eEEEEeCCCcEEEE
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFP----WLVSAAGDGKLSLI  405 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~----~l~s~s~dg~i~vw  405 (536)
                      ...+.++.+.  +..+++++.++.+++|+++.....  .....  ..+...+.++.+  ++.    .+++++.||.|++|
T Consensus       170 ~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          170 PERCYCADVI--YPMAVVATAERGLIVYQLENQPSE--FRRIE--SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             SSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEE--EEECC--CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             CCCceEEEec--CCeeEEEeCCCcEEEEEeccccch--hhhcc--ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            3466666665  458889999999999999876321  11122  223344444444  433    49999999999999


Q ss_pred             ECCcccc---cCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhh
Q 009373          406 DVRKLLR---SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALR  480 (536)
Q Consensus       406 d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~  480 (536)
                      |++....   .......       ..........+|...+.++.++++  +|++|+.||.|++||+.++..+....    
T Consensus       244 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----  312 (368)
T 3mmy_A          244 YINPPNPAKDNFTFKCH-------RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE----  312 (368)
T ss_dssp             ESSCSCHHHHSEEEECS-------EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC----
T ss_pred             ecCCCCccccceeeeee-------ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec----
Confidence            9987421   0000000       000000111223336777776654  99999999999999999876654321    


Q ss_pred             cccchhHHHhhhhccccccCCCCcceeEeecccCCc
Q 009373          481 GIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM  516 (536)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  516 (536)
                            .......+++|+|+|..+++++.+.....+
T Consensus       313 ------~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          313 ------QLDQPISACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             ------CCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred             ------CCCCCceEEEECCCCCeEEEEecccccccc
Confidence                  123456789999999999999887655444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=5e-28  Score=240.88  Aligned_cols=261  Identities=16%  Similarity=0.236  Sum_probs=196.4

Q ss_pred             eCCCCceEEE--EecC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEE
Q 009373          196 SKPLGCTIRA--VAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSG  269 (536)
Q Consensus       196 ~~~~~~~v~~--~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~  269 (536)
                      ...|...|.+  ++|+ +.+|++|+.||.|++|++.+.....   ...........+.+|...|.+++|  ++. +|++|
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP---EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC---CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc---CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3455555544  4575 6799999999999999997631110   001113466778899999999999  344 99999


Q ss_pred             ecCCeEEEEeCCCceE-------eEee-eccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCC---cEEEEEccccccc
Q 009373          270 SWDMTVRVWDRALLKC-------LKVL-RHSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSG---CLLTVVNGAHVGN  334 (536)
Q Consensus       270 s~dg~i~iwd~~~~~~-------~~~~-~~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~---~~~~~~~~~~~~~  334 (536)
                      +.||+|++||+.++..       ...+ .|...|.+++  | ++.++++++ ++.|++||++++   +.+..+. .|...
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~  279 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAE  279 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSC
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCC
Confidence            9999999999987322       2333 3888899988  4 577888887 899999999987   4666664 69999


Q ss_pred             eEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcc
Q 009373          335 TKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       335 i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~  410 (536)
                      |++++|+|++. ++++|+.||.|++||++...     .++..+.+|...|++++|+|   .+|++++.||.|++||+...
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence            99999999987 68899999999999998853     46777889999999999987   46999999999999999873


Q ss_pred             cccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC---EEEEecCCCeEEEEeCCchh
Q 009373          411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD---RIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      .........     ............+|...+.+++++++   +|++++.||.|++|++.++.
T Consensus       355 ~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~  412 (430)
T 2xyi_A          355 GEEQSTEDA-----EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV  412 (430)
T ss_dssp             TCCCCHHHH-----HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred             ccccCcccc-----ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence            221100000     00001233445678888888887765   89999999999999998653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=2.1e-28  Score=235.85  Aligned_cols=274  Identities=10%  Similarity=0.081  Sum_probs=210.6

Q ss_pred             eCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEe
Q 009373          196 SKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGS  270 (536)
Q Consensus       196 ~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s  270 (536)
                      ..+|...|.++.  |++.+|++|+.||.|++|++.++..          ......+.+|...|.+++|  +++ +|++|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc----------cccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence            457877777665  8999999999999999999976521          1124455689999999999  678 899999


Q ss_pred             cCCeEEEEeC-CCceEeEeee--ccccEEEEe--ecCCEEEEec-CCcEEEEeCCC---------CcEEEEEccccccce
Q 009373          271 WDMTVRVWDR-ALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNS---------GCLLTVVNGAHVGNT  335 (536)
Q Consensus       271 ~dg~i~iwd~-~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~---------~~~~~~~~~~~~~~i  335 (536)
                      .||.|++||+ .+++......  |...|.++.  + +..+++++ |+.|++||+++         ++.+..+.  |...+
T Consensus        77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v  153 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKI  153 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCE
T ss_pred             CCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCce
Confidence            9999999999 8887765556  889999988  5 88888888 89999999987         66666653  88999


Q ss_pred             EEEEEeCCCCEEEEEcCCCcEEEEEccc-CccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCccc
Q 009373          336 KSLARSHTGDFLFTGGEDGAIHMYEIIN-DCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       336 ~~l~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~  411 (536)
                      .+++|+|++  +++++.||.|++||+++ ...    ........|...|.+++|+|   .++++++.||.|++|+++...
T Consensus       154 ~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~  227 (342)
T 1yfq_A          154 FTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG  227 (342)
T ss_dssp             EEEEECSSE--EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred             EEEEecCCc--EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence            999999887  99999999999999988 421    12334457889999999986   699999999999999997640


Q ss_pred             ccCCCCCCCceeeEEeeCCCeeeeccc---------cccEEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhh
Q 009373          412 RSGRPTSGKRVSRVIEVEPPQRMLHGF---------ECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALR  480 (536)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~  480 (536)
                      ....             ......+.+|         ...+.++.+++  ++|++|+.||.|++||+.++..+......  
T Consensus       228 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--  292 (342)
T 1yfq_A          228 DDYN-------------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF--  292 (342)
T ss_dssp             CSTT-------------CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--
T ss_pred             cccc-------------cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc--
Confidence            0000             0111223333         34777777654  59999999999999999988765432111  


Q ss_pred             cccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373          481 GIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                             ....+.+++  |+|..+++++.+..
T Consensus       293 -------h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          293 -------NEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             -------SSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             -------cCCCceEec--CCCCeEEEEecCCc
Confidence                   022345666  99999999998877

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.1e-28  Score=237.64  Aligned_cols=235  Identities=10%  Similarity=0.115  Sum_probs=181.0

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEe-----------CCCcEEEEECCCCceee----ee-----CCCC--ceEEEEecC
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSG-----------YDSIVRMWHLEDGFSIA----SS-----KPLG--CTIRAVAAD  209 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs-----------~dg~v~iwd~~~~~~~~----~~-----~~~~--~~v~~~~~~  209 (536)
                      ..|.+|.+.|++++++  ++.+++|.           .|+++++|++.+.....    ..     ..+.  ..+.+|+||
T Consensus        67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD  144 (365)
T 4h5i_A           67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE  144 (365)
T ss_dssp             EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred             EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence            4678999999998775  66777664           57889999987653211    11     1122  346788899


Q ss_pred             CCEEEEE--eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE
Q 009373          210 KKLLVAG--GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC  285 (536)
Q Consensus       210 ~~~l~sg--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~  285 (536)
                      |++++++  +.|++|++||+.++.             ....+ .|.+.|.+++|  ++.++++++.| .+++|+..+++.
T Consensus       145 g~~la~as~~~d~~i~iwd~~~~~-------------~~~~~-~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~  209 (365)
T 4h5i_A          145 GTVAAIASSKVPAIMRIIDPSDLT-------------EKFEI-ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC  209 (365)
T ss_dssp             SSCEEEEESCSSCEEEEEETTTTE-------------EEEEE-ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred             CCEEEEEECCCCCEEEEeECCCCc-------------EEEEe-CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence            9987654  478999999997753             33344 47888999999  77889888855 566666666665


Q ss_pred             eEeee---ccccEEEEe--ecCCEEEEec-CC----cEEEEeCCCCcEE----EEEccccccceEEEEEeCCCCEEEEEc
Q 009373          286 LKVLR---HSDWVYGLA--PHDTTVASTS-GS----DVYIWDTNSGCLL----TVVNGAHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       286 ~~~~~---~~~~v~~~~--~~~~~l~~~~-d~----~i~i~d~~~~~~~----~~~~~~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                      .....   |...|.+++  |++..+++++ ++    .+++||+......    ..+ .+|...|++++|+|+|++||+|+
T Consensus       210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQV-TNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEE-ESSCSCEEEEEECTTSCEEEEEE
T ss_pred             eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeee-cCCCCCeEeEEECCCCCceEEEc
Confidence            54322   777888876  8999999887 55    5888998776542    233 36889999999999999999999


Q ss_pred             CCCcEEEEEcccCccccccceeee-ccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          352 EDGAIHMYEIINDCTEANVLLVAT-WIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       352 ~dg~i~iwd~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .|++|+|||+.++      .++.. +.+|..+|++++|+|  .+|++||.|++|+|||+...
T Consensus       289 ~D~~V~iwd~~~~------~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          289 NDNSIALVKLKDL------SMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTSCEEEEETTTT------EEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCCEEEEEECCCC------cEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999988      56665 579999999999987  79999999999999999653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.7e-28  Score=234.31  Aligned_cols=254  Identities=11%  Similarity=0.040  Sum_probs=188.5

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCC------
Q 009373          208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA------  281 (536)
Q Consensus       208 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~------  281 (536)
                      +++..+++|+.||+|++||+.++.             ....+.  ...|.++.+.+. +++++.|++|++|+..      
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~-------------~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSK-------------TITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSS-------------CEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEE
T ss_pred             CCCCEEEEECCCCcEEEEECCCCc-------------EEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEe
Confidence            678899999999999999998764             222222  455666777666 9999999999999765      


Q ss_pred             ---CceEeEeee--ccccEEEEe--e--cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373          282 ---LLKCLKVLR--HSDWVYGLA--P--HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       282 ---~~~~~~~~~--~~~~v~~~~--~--~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                         +++.+..+.  |...|.++.  |  +++++++++ |+.|++||+++++........+...+++++|+|++.+|++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc
Confidence               445444444  567899988  7  889999888 999999999999987776555677899999999999999999


Q ss_pred             CCCcEEEEEcccCcccccccee-eeccC-CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEe
Q 009373          352 EDGAIHMYEIINDCTEANVLLV-ATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       352 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                      .||.|++||++++      ..+ ..+.+ |.++|++++|+|  .+|++++ |+.|++||+++.........         
T Consensus       190 ~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~---------  253 (343)
T 3lrv_A          190 PDGILDVYNLSSP------DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT---------  253 (343)
T ss_dssp             TTSCEEEEESSCT------TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC---------
T ss_pred             CCCEEEEEECCCC------CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc---------
Confidence            9999999999988      344 56677 999999999987  6899998 55999999998543322111         


Q ss_pred             eCCCeeeeccccc----cEEEEEecCCEEEEecC-CCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcccccc---
Q 009373          428 VEPPQRMLHGFEC----NLLSVDIGADRIVCGGE-EGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSS---  499 (536)
Q Consensus       428 ~~~~~~~~~~~~~----~v~~~~~~~~~l~sg~~-Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  499 (536)
                             +..|..    ...++++++.+|++++. |+.|++|++..+......              .....+.|+|   
T Consensus       254 -------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~  312 (343)
T 3lrv_A          254 -------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------------DEESALCLQSDTA  312 (343)
T ss_dssp             -------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------------EEEEECCC----C
T ss_pred             -------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------------cCceeEecCcccc
Confidence                   001111    24566667779999888 999999999765422111              2234677888   


Q ss_pred             CCCCcceeEeecccC
Q 009373          500 KGGRTDQCSVAAKKN  514 (536)
Q Consensus       500 ~g~~~~~~~~~~~~~  514 (536)
                      ++..+++++.+....
T Consensus       313 ~~~~l~~~~~d~~~~  327 (343)
T 3lrv_A          313 DFTDMDVVCGDGGIA  327 (343)
T ss_dssp             CCCEEEEEEETTEEE
T ss_pred             ccceeEEEecCCceE
Confidence            777777776655443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.3e-27  Score=231.36  Aligned_cols=285  Identities=11%  Similarity=0.135  Sum_probs=190.5

Q ss_pred             EEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE
Q 009373          184 MWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL  261 (536)
Q Consensus       184 iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  261 (536)
                      ||++.+.+.+.....|...|.++  +|++.+|++|+.+| +++|++.++.             .......+  .+..+++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~-------------~~~~~~~~--~~~~~~~   66 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA-------------HIMSQEMR--HLSKVRM   66 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEE-------------EEEEEECS--CCCEEEE
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcc-------------eeeeeecC--CeEEEEE
Confidence            56677777777777777776555  58999999998776 7899986542             12222112  3444554


Q ss_pred             --eCCEE-EEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEecCCcEEEEeCCCC-cEEEEEccccccceEE
Q 009373          262 --DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAHVGNTKS  337 (536)
Q Consensus       262 --~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~i~~  337 (536)
                        +++.+ ++++.|++|++||..+++.+..+.+...|.++..+...++++.++.|++||+.++ +.+..+..    ....
T Consensus        67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~~  142 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR----FGGV  142 (355)
T ss_dssp             CTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE----EEEE
T ss_pred             cCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc----CCce
Confidence              56665 6788899999999999999999998889999998888888888999999999998 66655532    3445


Q ss_pred             EEEeCCCCEEEE--EcCCCcEEEEEcccCccc---------cccce-eeeccCCCCCeEEEEEcC--CeEEEEeCCCc-E
Q 009373          338 LARSHTGDFLFT--GGEDGAIHMYEIINDCTE---------ANVLL-VATWIPHTGPVNSLAFEF--PWLVSAAGDGK-L  402 (536)
Q Consensus       338 l~~~~~~~~l~t--g~~dg~i~iwd~~~~~~~---------~~~~~-~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~-i  402 (536)
                      +++++  .++++  |+.||.|++||+.++...         ....+ +..+.+|.+.|++++|+|  .+|++|+.||+ |
T Consensus       143 ~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          143 CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence            56676  56665  689999999999875310         01112 677899999999999987  79999999998 9


Q ss_pred             EEEECCcccccCCCCCCCceeeEEeeCCCeeeec-c-ccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHh
Q 009373          403 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-G-FECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARA  478 (536)
Q Consensus       403 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~  478 (536)
                      ++||++++.                   ....+. + |...|.+++++++  +|++|+.||+|++||+..+......  .
T Consensus       221 ~iwd~~~~~-------------------~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~--~  279 (355)
T 3vu4_A          221 RVFKTEDGV-------------------LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH--A  279 (355)
T ss_dssp             EEEETTTCC-------------------EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE--E
T ss_pred             EEEECCCCc-------------------EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc--c
Confidence            999998742                   223344 4 7788888887664  9999999999999999875321110  0


Q ss_pred             hhcc---------------cchhHHHhhhhccccccCCCCcceeEeec
Q 009373          479 LRGI---------------RLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       479 ~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      +...               ............++|+++|..+++.+.+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg  327 (355)
T 3vu4_A          280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR  327 (355)
T ss_dssp             TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred             ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence            0000               00000111125678999999888865433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.5e-27  Score=253.69  Aligned_cols=247  Identities=18%  Similarity=0.194  Sum_probs=194.4

Q ss_pred             eeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e--CCEEE
Q 009373          194 ASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D--LTRIY  267 (536)
Q Consensus       194 ~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~--~~~l~  267 (536)
                      ..+.+|...|.++.  |++++|++|+.||+|++||+..+.           ......+.+|.++|.+++|  +  ++.|+
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-----------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~   71 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-----------HKLIDTLTGHEGPVWRVDWAHPKFGTILA   71 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCTTSCSEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-----------CccceeccCCcCceEEEEecCCCCCCEEE
Confidence            45678999998876  889999999999999999986431           3356678899999999999  3  78999


Q ss_pred             EEecCCeEEEEeCCCce--EeEeee-ccccEEEEe--ec--CCEEEEec-CCcEEEEeCCCCc--EEEEEccccccceEE
Q 009373          268 SGSWDMTVRVWDRALLK--CLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGC--LLTVVNGAHVGNTKS  337 (536)
Q Consensus       268 s~s~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~~i~~  337 (536)
                      +|+.||+|++||+.+++  ....+. |...|.++.  |+  +..+++++ |+.|++||++++.  ....+ .+|...|.+
T Consensus        72 s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~-~~~~~~v~~  150 (753)
T 3jro_A           72 SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS  150 (753)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE-ECCSSCEEE
T ss_pred             EEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe-ecCCCceEE
Confidence            99999999999999886  444444 889999988  66  88888888 8999999999873  23333 369999999


Q ss_pred             EEEeC-------------CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-----CeEEEEeCC
Q 009373          338 LARSH-------------TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD  399 (536)
Q Consensus       338 l~~~~-------------~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d  399 (536)
                      ++|+|             ++.+|++|+.||.|++||++++..  .......+.+|..+|++++|+|     .+|++|+.|
T Consensus       151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D  228 (753)
T 3jro_A          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  228 (753)
T ss_dssp             EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred             EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc--cceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence            99999             589999999999999999987732  2245667889999999999985     489999999


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCCEEEEecCCCeEEEEeCCc
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GADRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~sg~~Dg~i~vW~~~~  468 (536)
                      |.|++||+++......              .......+|...+.++.+  ++.++++|+.||.|++|++.+
T Consensus       229 g~I~iwd~~~~~~~~~--------------~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          229 RTCIIWTQDNEQGPWK--------------KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCEEEEEESSSSSCCB--------------CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CEEEEecCCCCCCcce--------------eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999999987532111              011122345555655554  556999999999999999984

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.7e-26  Score=230.24  Aligned_cols=275  Identities=13%  Similarity=0.119  Sum_probs=212.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-----eeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-----SSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~-----~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      +..+..+. .+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...+.++.  +++.++++++.|+.|+
T Consensus       116 ~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~  194 (433)
T 3bws_A          116 ISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH  194 (433)
T ss_dssp             EEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred             EEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence            44555554 45699999988888888899999999999998877     3446777776554  7899999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeCCCceEeEeeeccccEEEEe-
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-  299 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-  299 (536)
                      +||+.++.             ....+..|...+.+++|  +++.++ +++.|+.|++||+.+++....+.....+.++. 
T Consensus       195 ~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  261 (433)
T 3bws_A          195 VFDLKTLA-------------YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLL  261 (433)
T ss_dssp             EEETTTCC-------------EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEE
T ss_pred             EEECCCce-------------EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEE
Confidence            99997653             45566688999999999  556664 55589999999999999988887666677776 


Q ss_pred             -ecCCEEEEec---------CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCE-EEEEcCCCcEEEEEcccCcccc
Q 009373          300 -PHDTTVASTS---------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF-LFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       300 -~~~~~l~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~-l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                       |+++.+++++         |+.|++||+.+++.+..+  .|...+.+++|+|+++. +++++.|+.|++||+.++    
T Consensus       262 ~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~----  335 (433)
T 3bws_A          262 SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK----  335 (433)
T ss_dssp             CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT----
T ss_pred             cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC----
Confidence             7888887766         578999999999888776  37778999999999975 566789999999999877    


Q ss_pred             ccceeeeccCCCCCeEEEEEcC--CeEEEEeC---------------CCcEEEEECCcccccCCCCCCCceeeEEeeCCC
Q 009373          369 NVLLVATWIPHTGPVNSLAFEF--PWLVSAAG---------------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP  431 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  431 (536)
                        ..+..+ .+...+.+++|+|  .+|++++.               ||.|++||+.++....                 
T Consensus       336 --~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~-----------------  395 (433)
T 3bws_A          336 --KVQKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE-----------------  395 (433)
T ss_dssp             --EEEEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE-----------------
T ss_pred             --cEEEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE-----------------
Confidence              344444 3677899999986  57887776               5799999998742221                 


Q ss_pred             eeeeccccccEEEEE--ecCCEEEEec-CCCeEEEEeCCc
Q 009373          432 QRMLHGFECNLLSVD--IGADRIVCGG-EEGIVRIWNFSQ  468 (536)
Q Consensus       432 ~~~~~~~~~~v~~~~--~~~~~l~sg~-~Dg~i~vW~~~~  468 (536)
                        .+.+ ...+.++.  +++++|++++ .|+.|++|+++.
T Consensus       396 --~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          396 --FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             --EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             --EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence              1111 12344454  4556777665 599999999863

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2e-26  Score=213.13  Aligned_cols=271  Identities=13%  Similarity=0.073  Sum_probs=179.1

Q ss_pred             EEEEEEecCCC---EEEEEeCCCcEEEEECCCC---ceeeeeCCCCceEEEEecCC---CEEEEEeCCCcEE-EEEcccC
Q 009373          161 VLTVFVLASAK---LLFTSGYDSIVRMWHLEDG---FSIASSKPLGCTIRAVAADK---KLLVAGGTDGFIH-CWRAVEV  230 (536)
Q Consensus       161 V~~v~~~~~~~---~l~sgs~dg~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~~---~~l~sg~~dg~i~-vwd~~~~  230 (536)
                      |.++.|-.-+-   .++++++ .+|++|+..++   +.+.+++.|..+|..+.|-+   +++.++-.+=.+. ++.+.-.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            55666654433   5667764 68999999999   88999999999999887433   2333222221111 1111000


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEe---cCCeEEEEeC-CCceEeEeee-cccc--EEEEee---
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS---WDMTVRVWDR-ALLKCLKVLR-HSDW--VYGLAP---  300 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s---~dg~i~iwd~-~~~~~~~~~~-~~~~--v~~~~~---  300 (536)
                            ... ..........+|...|.++  ....++..+   .|+.|++|++ .+++.+..+. |...  +.++++   
T Consensus       121 ------pd~-~~~~~~l~s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          121 ------SDD-ESEKQVLLKSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             ------------CCEEEEEEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             ------CCc-cccccEEEeCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence                  000 0001111123444444443  445555554   4999999999 4577776655 5544  455566   


Q ss_pred             cCCEEEEec-CCcEEEEeCCCCcEEEEEcccc--ccceEEEEEeCCCCEE------------EEEcCCCcEEEEEcccCc
Q 009373          301 HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH--VGNTKSLARSHTGDFL------------FTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       301 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l------------~tg~~dg~i~iwd~~~~~  365 (536)
                      ++.+|++++ |++|+|||+.+++.+.++..+|  ...+.+++|+|+|.++            ++|+.|++|++||..++ 
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg-  270 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT-  270 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT-
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-
Confidence            679999988 9999999999999999996432  3467888999999876            56888999999999888 


Q ss_pred             cccccceeeec-----cCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          366 TEANVLLVATW-----IPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       366 ~~~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                           ..+..+     .+|...+.+..+++.++++++.|++|+|||+.++                   .....+.+|..
T Consensus       271 -----k~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG-------------------k~l~tL~gH~~  326 (356)
T 2w18_A          271 -----LSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG-------------------QCTALLPPVSD  326 (356)
T ss_dssp             -----EEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC-------------------SEEEEECCC--
T ss_pred             -----EEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC-------------------cEEEEecCCCC
Confidence                 333332     4777777777777889999999999999999884                   33345566654


Q ss_pred             cE---EEEEecCCEEEEecCCCeEEEEeC
Q 009373          441 NL---LSVDIGADRIVCGGEEGIVRIWNF  466 (536)
Q Consensus       441 ~v---~~~~~~~~~l~sg~~Dg~i~vW~~  466 (536)
                      .+   .++++++.+|+||+.|++|+|||+
T Consensus       327 ~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          327 QHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            33   345566669999999999999996

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=4.3e-25  Score=216.95  Aligned_cols=320  Identities=13%  Similarity=0.061  Sum_probs=225.5

Q ss_pred             CccceeeeeCccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEE-EEeCCCcEE
Q 009373          147 GRYSIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLV-AGGTDGFIH  223 (536)
Q Consensus       147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~-sg~~dg~i~  223 (536)
                      ....+..+.+|.. +.+++|+|+++++ ++++.|++|++||+.+++.+..+..+. ....+++|+++.|+ +++.++.|+
T Consensus        21 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~   99 (391)
T 1l0q_A           21 SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS   99 (391)
T ss_dssp             TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred             CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEE
Confidence            3345667777754 8999999999976 677799999999999999888876554 23345668898775 555679999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEE-EEEecCCeEEEEeCCCceEeEeeeccccEEEEe-
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA-  299 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-  299 (536)
                      +||+.++.             ....+. +...+.+++|  +++.+ ++++.|+.|++||+.+++....+.....+.++. 
T Consensus       100 v~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  165 (391)
T 1l0q_A          100 VIDTTSNT-------------VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAV  165 (391)
T ss_dssp             EEETTTTE-------------EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEE
T ss_pred             EEECCCCe-------------EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEE
Confidence            99997753             233333 4456899999  56666 788889999999999999988888556666665 


Q ss_pred             -ecCCEE-EEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCcccccccee
Q 009373          300 -PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       300 -~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~  373 (536)
                       ++++.+ +++. ++.|++||+++++....+.  +...+.+++|+|++++|++++   .++.|++||+.++      ..+
T Consensus       166 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~------~~~  237 (391)
T 1l0q_A          166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------KIT  237 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------EEE
T ss_pred             CCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC------eEE
Confidence             788877 4555 7899999999998888774  667899999999999999888   6899999999887      455


Q ss_pred             eeccCCCCCeEEEEEcC--CeE-EEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee-ccccccEEEEEec-
Q 009373          374 ATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-HGFECNLLSVDIG-  448 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~-  448 (536)
                      ..+..|. .+.+++|+|  .+| ++++.|+.|++||+.++........+.....   ........ .++...+..+..+ 
T Consensus       238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~fs~~~  313 (391)
T 1l0q_A          238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYA---SGQFIGSIPVQPVYPSADFKSNI  313 (391)
T ss_dssp             EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEC---CSSCEEECSSCCCCCBCCEEESC
T ss_pred             EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCc---cceeeeccccccccccccccccc
Confidence            5565554 578999986  456 6778899999999987544322211111000   00000000 0111112222221 


Q ss_pred             -------C--CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEe
Q 009373          449 -------A--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       449 -------~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  509 (536)
                             .  -.+...+.|..+++|++.++....                .......++++|...++..+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~----------------~~~~~~~~~~~g~y~~~~~~  367 (391)
T 1l0q_A          314 TSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK----------------KQNPTHTYSETGIYTVRLTV  367 (391)
T ss_dssp             CSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC----------------SSSCEECCSSCEEEEEEEEE
T ss_pred             ccccccccceEEEEeCCCCceEEEEECCCCcccC----------------cCCCeEEeCCCceEEEEEEE
Confidence                   1  256777889999999998875310                11234678888888877554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=7.1e-27  Score=229.50  Aligned_cols=256  Identities=11%  Similarity=0.081  Sum_probs=164.1

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-----eeeCCCCceEEEEe--c--------CCCEEEEEe
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-----ASSKPLGCTIRAVA--A--------DKKLLVAGG  217 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~~~--~--------~~~~l~sg~  217 (536)
                      ....|...+....+.+++.+|++|+.|++|+|||+.++...     ..+.+|...|.++.  |        ++++|++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            34456666666667778889999999999999999988643     34688999998776  4        688999999


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC---CEEEEEecCCeEEEEeCCCceEeEeee----
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLR----  290 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~----  290 (536)
                      .|++|++||+.++.             ....+.+|.++|.+++|.+   .+|++|+.||+|++||+.+++......    
T Consensus       164 ~D~tv~~Wd~~~~~-------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~  230 (393)
T 4gq1_A          164 DDCTLIIWRLTDEG-------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL  230 (393)
T ss_dssp             TTSEEEEEEEETTE-------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred             CCCeEEEEECCCCc-------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence            99999999996642             5566778999999999943   479999999999999999887665543    


Q ss_pred             -ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEe-CCCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          291 -HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       291 -~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                       +...+........                  ..... ..+|...+.++.|+ |++..|++++.|+++++||+....   
T Consensus       231 ~~~~~~~s~~~~~~------------------~~~~~-~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~---  288 (393)
T 4gq1_A          231 VKNPWLLTLNTLPL------------------VNTCH-SSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN---  288 (393)
T ss_dssp             CSCCCSEEEESGGG------------------C-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred             cccceEEecccccc------------------eeeee-cccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC---
Confidence             1111111111100                  00011 12588889999987 799999999999999999998763   


Q ss_pred             ccceeeeccCCCCCeEEE------------------EEcC----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEE
Q 009373          369 NVLLVATWIPHTGPVNSL------------------AFEF----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l------------------~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                         ....+..|...+..+                  .|.+    .++++|+.||.|++||+.++.               
T Consensus       289 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---------------  350 (393)
T 4gq1_A          289 ---DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---------------  350 (393)
T ss_dssp             ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT---------------
T ss_pred             ---CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc---------------
Confidence               222333333333222                  2222    267788889999999998742               


Q ss_pred             eeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeC
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~  466 (536)
                          ......+|...|.+++|+++  +||+++.|| +.+|++
T Consensus       351 ----~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          351 ----SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             ----CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ----EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence                22334556667777776655  999998776 555554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-25  Score=224.09  Aligned_cols=245  Identities=13%  Similarity=0.085  Sum_probs=193.4

Q ss_pred             eeeeCccccEEEEEEecCCCEE-EEEeCCCcEEEEECC--CCceeeeeC--CCCceEEE--EecCCCEEEEEeCCCcEEE
Q 009373          152 DVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLE--DGFSIASSK--PLGCTIRA--VAADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~--~~~~~~~~~--~~~~~v~~--~~~~~~~l~sg~~dg~i~v  224 (536)
                      ....+|.+.|++++|+|++++| ++|+.||.|++||+.  +++.+..+.  .+...+.+  ++|++.+|++|+.+|.|++
T Consensus        96 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B           96 LGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             ----CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            3556899999999999999996 899999999999999  888887775  45555554  5589999999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--e---CCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEE
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D---LTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYG  297 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~  297 (536)
                      |++.++...         ......+.+|.+.|.+++|  +   +.+|++|+.|++|++||+.+++.+..+.  |...|.+
T Consensus       176 ~~~~~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~  246 (450)
T 2vdu_B          176 IDINSIPEE---------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSS  246 (450)
T ss_dssp             EETTSCCCS---------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEE
T ss_pred             EecCCcccc---------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEE
Confidence            998765310         0023356789999999999  5   5599999999999999999998877643  8889998


Q ss_pred             Eee-cCCEEEEec-CCcEEEEeCCCCcEEEEEccc------------------------cccceEEEEEeCCCCEEEEEc
Q 009373          298 LAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGA------------------------HVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       298 ~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~------------------------~~~~i~~l~~~~~~~~l~tg~  351 (536)
                      ++. ++.+|++++ |+.|++||+.+++.+..+...                        ....+.+++|+|++++|++++
T Consensus       247 ~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          247 ICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             EEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             EEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence            875 688999988 899999999999988877521                        235689999999999999998


Q ss_pred             -CCCcEEEEEc--ccCccccccceeeeccCCCCCeEEEEEcCC-eEEEEeC-------CCcEEEEECCc
Q 009373          352 -EDGAIHMYEI--INDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAG-------DGKLSLIDVRK  409 (536)
Q Consensus       352 -~dg~i~iwd~--~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~-------dg~i~vwd~~~  409 (536)
                       .|+.|++|++  ...   ..+..+..+..| +.|.+++|+|+ .+++.+.       +..|.+|.+..
T Consensus       327 ~~d~~i~iw~~~~~~~---~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          327 EATKCIIILEMSEKQK---GDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             TTCSEEEEEEECSSST---TCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             CCCCeEEEEEeccCCC---CceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence             8999999999  333   223456667777 89999999985 4444332       44578887653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.95  E-value=7.2e-25  Score=215.31  Aligned_cols=261  Identities=11%  Similarity=0.058  Sum_probs=199.4

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      .++++++.|+.|++||+.+++.+..+..|.. ...+++++++.+ ++++.|+.|++||+.++.             ....
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------~~~~   69 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------VIAT   69 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------EEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------EEEE
Confidence            4688999999999999999999888876654 334566899876 677799999999997753             3334


Q ss_pred             eeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEE-EEec-CCcEEEEeCCCC
Q 009373          249 LWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTV-ASTS-GSDVYIWDTNSG  321 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l-~~~~-d~~i~i~d~~~~  321 (536)
                      +..+. .+.+++|  ++++++ +++.|+.|++||+.+++.+..+.+...+.++.  ++++.+ ++++ ++.|++||+.++
T Consensus        70 ~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  148 (391)
T 1l0q_A           70 VPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK  148 (391)
T ss_dssp             EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             EECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            44343 8999999  567665 55577999999999999988888666777776  788876 5666 899999999999


Q ss_pred             cEEEEEccccccceEEEEEeCCCCEE-EEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-
Q 009373          322 CLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-  397 (536)
Q Consensus       322 ~~~~~~~~~~~~~i~~l~~~~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-  397 (536)
                      +.+..+.  ....+.+++|+|+++++ ++++.|+.|++||++++      .....+ .+...+.+++|+|  .+|++++ 
T Consensus       149 ~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~  219 (391)
T 1l0q_A          149 AVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTV-KVEAAPSGIAVNPEGTKAYVTNV  219 (391)
T ss_dssp             EEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEE-ECSSEEEEEEECTTSSEEEEEEE
T ss_pred             cEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC------eEEEEE-ecCCCccceEECCCCCEEEEEec
Confidence            9888875  34567999999999877 67788999999999887      344443 3556889999986  5788777 


Q ss_pred             --CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--ecCCEE-EEecCCCeEEEEeCCchhhH
Q 009373          398 --GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGADRI-VCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       398 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l-~sg~~Dg~i~vW~~~~~~~~  472 (536)
                        .++.|++||+++....                   ..+..+. .+.++.  ++++++ ++++.|+.|++||+.+++.+
T Consensus       220 ~~~~~~v~~~d~~~~~~~-------------------~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          220 DKYFNTVSMIDTGTNKIT-------------------ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             CSSCCEEEEEETTTTEEE-------------------EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CcCCCcEEEEECCCCeEE-------------------EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence              6899999999874221                   1122222 234444  455555 78899999999999987665


Q ss_pred             HH
Q 009373          473 ER  474 (536)
Q Consensus       473 ~~  474 (536)
                      ..
T Consensus       280 ~~  281 (391)
T 1l0q_A          280 AT  281 (391)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=5.6e-27  Score=230.23  Aligned_cols=248  Identities=10%  Similarity=0.029  Sum_probs=159.3

Q ss_pred             CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe-----ee-ccccEEEEe--e--------cCCEEEEec-CC
Q 009373          251 EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-----LR-HSDWVYGLA--P--------HDTTVASTS-GS  311 (536)
Q Consensus       251 ~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~-~~~~v~~~~--~--------~~~~l~~~~-d~  311 (536)
                      .|...+....+  ++..+++++.|++|++||..+++....     +. |.+.|.+++  |        ++++|++++ |+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            34444433333  667899999999999999998866432     22 899999988  3        678999998 89


Q ss_pred             cEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCcccccc-------------------c
Q 009373          312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANV-------------------L  371 (536)
Q Consensus       312 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~-------------------~  371 (536)
                      +|++||++++.++..+. +|...+.+++|+|++. +|++|+.||+|++||++++......                   .
T Consensus       167 tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~  245 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV  245 (393)
T ss_dssp             EEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred             eEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence            99999999888777765 5889999999999874 8999999999999999876432111                   1


Q ss_pred             eeeeccCCCCCeEEEEEc---CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE-EEEe
Q 009373          372 LVATWIPHTGPVNSLAFE---FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL-SVDI  447 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~  447 (536)
                      ......+|...|.++.|.   +..|++++.|+++++||+....................+.+.......+...+. .+.+
T Consensus       246 ~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (393)
T 4gq1_A          246 NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHP  325 (393)
T ss_dssp             ------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred             eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEcc
Confidence            112235788899999995   379999999999999999875443322211111111111111222222221111 1222


Q ss_pred             c--CCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEe
Q 009373          448 G--ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       448 ~--~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  509 (536)
                      .  +.++++|+.||.|++||+.++.......          .....+.+++|+|||+.||+++-
T Consensus       326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~----------~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPI----------QLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             SCTTEEEEEETTTTEEEEEETTCTTCCEEEE----------ECSSCEEEEEECTTSSEEEEEES
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEec----------CCCCcEEEEEEcCCCCEEEEEeC
Confidence            2  2278899999999999999886543221          12235678999999999998864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=2e-26  Score=222.08  Aligned_cols=286  Identities=13%  Similarity=0.110  Sum_probs=194.6

Q ss_pred             eeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe----CCEEEE
Q 009373          195 SSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYS  268 (536)
Q Consensus       195 ~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s  268 (536)
                      .+.+|...|.++.  +++++|++|+.||.|++||+.++.         ........+.+|...|.+++|.    +++|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s   76 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT---------SNWELSDSWRAHDSSIVAIDWASPEYGRIIAS   76 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS---------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC---------CcceecceeccCCCcEEEEEEcCCCCCCEEEE
Confidence            4578888887776  899999999999999999997653         1123556678999999999992    789999


Q ss_pred             EecCCeEEEEeCCCc---------eEeEeee-ccccEEEEe--ec--CCEEEEec-CCcEEEEeCCCCcEEEEEc-----
Q 009373          269 GSWDMTVRVWDRALL---------KCLKVLR-HSDWVYGLA--PH--DTTVASTS-GSDVYIWDTNSGCLLTVVN-----  328 (536)
Q Consensus       269 ~s~dg~i~iwd~~~~---------~~~~~~~-~~~~v~~~~--~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~-----  328 (536)
                      |+.||+|++||+.++         +....+. |...|.++.  ++  +.++++++ |+.|++||+++++.+..+.     
T Consensus        77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  156 (351)
T 3f3f_A           77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM  156 (351)
T ss_dssp             EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE
T ss_pred             EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc
Confidence            999999999999886         4455555 889999988  66  88888888 8999999999876543321     


Q ss_pred             -------cccccceEEEEEeCC---CCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC------e
Q 009373          329 -------GAHVGNTKSLARSHT---GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP------W  392 (536)
Q Consensus       329 -------~~~~~~i~~l~~~~~---~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~  392 (536)
                             .+|...+.+++|+|+   +.++++++.|+.+.+|+...+.    ...+..+.+|...|++++|+|.      +
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~h~~~i~~~~~~p~~~~~~~~  232 (351)
T 3f3f_A          157 KVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK----LHVAAKLPGHKSLIRSISWAPSIGRWYQL  232 (351)
T ss_dssp             ESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----EEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred             cccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----eeeeeecCCCCcceeEEEECCCCCCcceE
Confidence                   257789999999997   8999999999999888776652    2347778899999999999864      7


Q ss_pred             EEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          393 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       393 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      |++++.||.|++||+++.............             ...................++.+..+.+|+..+...+
T Consensus       233 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (351)
T 3f3f_A          233 IATGCKDGRIRIFKITEKLSPLASEESLTN-------------SNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL  299 (351)
T ss_dssp             EEEEETTSCEEEEEEEECC----------------------------------------------------CCSEEEEEE
T ss_pred             EEEEcCCCeEEEEeCCCCcCccccCCcccc-------------eeccCCCcccccccccccccccceeeeecccccccEE
Confidence            999999999999999875332211100000             0000000011111122233444555566655544333


Q ss_pred             HHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCc
Q 009373          473 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPM  516 (536)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  516 (536)
                      ...          ......+.+++|+|+|..+++++.+.....+
T Consensus       300 ~~~----------~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw  333 (351)
T 3f3f_A          300 SEH----------DDHNGEVWSVSWNLTGTILSSAGDDGKVRLW  333 (351)
T ss_dssp             EEE----------CTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred             EEE----------ecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence            221          1123457889999999999998876554433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-26  Score=228.16  Aligned_cols=221  Identities=8%  Similarity=-0.038  Sum_probs=174.4

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-------eEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-------TIRAVAADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      +|.+.|++++|+|+|.+||+++.||+|++||.++  .+..+. |..       ...+++|+|++|++|+.||+|++||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5689999999999999999999999999999654  555556 543       345556999999999999999999997


Q ss_pred             cCccceecccCcccccceEEe----eCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceE---eEeee--ccccEEEEe
Q 009373          229 EVLPHLFDISGSEKQNTQFRL----WEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKC---LKVLR--HSDWVYGLA  299 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~--~~~~v~~~~  299 (536)
                      ++...-      ........+    .+|.+.|.+++|.++-+++++.|++|++||+.++..   ..++.  |...|.+++
T Consensus       160 ~~~l~~------~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          160 KNSENT------PEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             CCTTTC------CCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             CCcccc------ccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            752100      000123444    678899999999443399999999999999988774   24553  778899988


Q ss_pred             ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEE--eCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          300 PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLAR--SHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       300 ~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      ..+..++++++++|++||+.+++...... +|...++.++|  +|++..++++++||+ ++|...               
T Consensus       234 Fsg~~LASa~~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------  296 (588)
T 2j04_A          234 IVDYKVVLTCPGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------  296 (588)
T ss_dssp             EETTEEEEECSSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------
T ss_pred             EECCEEEEEeCCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------
Confidence            66899999999999999999887744443 69999999999  999999999999999 999865               


Q ss_pred             CCCCCeEEEEEcCCeEEEEeCCCcEEEEECCc
Q 009373          378 PHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       378 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~  409 (536)
                             .++++|+..++++.|+++++|+...
T Consensus       297 -------~~~~spd~~l~a~~d~~v~lW~~~g  321 (588)
T 2j04_A          297 -------ELHVTADNIIAPYLEKKFKKWSTIW  321 (588)
T ss_dssp             -------SEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred             -------cEEECCCceEEEEcCCEEEEEECCC
Confidence                   1446665444444599999998754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.2e-25  Score=207.90  Aligned_cols=180  Identities=11%  Similarity=0.093  Sum_probs=135.3

Q ss_pred             cCCCEEEEEe--CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-----eCCEEEEEecCCeEEEEeC
Q 009373          208 ADKKLLVAGG--TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-----DLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       208 ~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~dg~i~iwd~  280 (536)
                      ++++++.+++  .|+.|++|++...            ......+.+|...+..++|     ++..|++|+.|++|+|||+
T Consensus       143 ~~g~lv~ss~~g~d~~V~~~~~s~d------------G~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl  210 (356)
T 2w18_A          143 TKRRLVSSSGTLSDQQVEVMTFAED------------GGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL  210 (356)
T ss_dssp             TTTEEEEEESSSTTCEEEEEEECTT------------SCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred             CCCcEEEecccCCCCcEEEEEECCC------------CceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence            4455555533  5999999998442            1234455567776666665     4489999999999999999


Q ss_pred             CCceEeEeee-cc---ccEEE--EeecCCEE------------EEec-CCcEEEEeCCCCcEEEEE----ccccccceEE
Q 009373          281 ALLKCLKVLR-HS---DWVYG--LAPHDTTV------------ASTS-GSDVYIWDTNSGCLLTVV----NGAHVGNTKS  337 (536)
Q Consensus       281 ~~~~~~~~~~-~~---~~v~~--~~~~~~~l------------~~~~-d~~i~i~d~~~~~~~~~~----~~~~~~~i~~  337 (536)
                      .++++++++. |.   ..+.+  ++|++.++            ++++ |++|++||..+++.+..+    ..+|...+.+
T Consensus       211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~ls  290 (356)
T 2w18_A          211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLE  290 (356)
T ss_dssp             TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEE
T ss_pred             CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEc
Confidence            9999999986 32   34443  45888876            4455 789999999999987765    3467666554


Q ss_pred             EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE-EEEEcC--CeEEEEeCCCcEEEEEC
Q 009373          338 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN-SLAFEF--PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       338 l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~--~~l~s~s~dg~i~vwd~  407 (536)
                      ..++  +.++++|+.||+|+|||+.++      +++.++.+|...+. +++|+|  .+|++|+.|++|+|||+
T Consensus       291 g~~s--g~~lASgS~DgTIkIWDl~tG------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          291 GDVK--DHCAAAILTSGTIAIWDLLLG------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEE--TTEEEEEETTSCEEEEETTTC------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cccC--CCEEEEEcCCCcEEEEECCCC------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            4444  889999999999999999999      78889999987655 589987  59999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.93  E-value=2.7e-23  Score=207.03  Aligned_cols=234  Identities=13%  Similarity=0.099  Sum_probs=189.7

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEE--EecCCCEEE-EEeCCCcEEEEEccc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA--VAADKKLLV-AGGTDGFIHCWRAVE  229 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~~~~l~-sg~~dg~i~vwd~~~  229 (536)
                      .+.+|.+.|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+  ++++++.++ +++.|+.|++||+.+
T Consensus       164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~  243 (433)
T 3bws_A          164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT  243 (433)
T ss_dssp             HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence            56689999999999999999999999999999999999998888877766654  558888775 555899999999976


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe--------cCCeEEEEeCCCceEeEeeeccccEEEEe
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS--------WDMTVRVWDRALLKCLKVLRHSDWVYGLA  299 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s--------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~  299 (536)
                      +.             ....+. +...+.+++|  +++.+++++        .||.|++||+.+++....+.+...+.++.
T Consensus       244 ~~-------------~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  309 (433)
T 3bws_A          244 KL-------------EIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIV  309 (433)
T ss_dssp             TE-------------EEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEE
T ss_pred             Cc-------------EEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEE
Confidence            53             223333 3445889999  667888888        48899999999999888887777777766


Q ss_pred             --ecCCEE-EEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC---------------CCcEEEEE
Q 009373          300 --PHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---------------DGAIHMYE  360 (536)
Q Consensus       300 --~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~---------------dg~i~iwd  360 (536)
                        ++++.+ ++++ ++.|++||+.+++.+..+.  +...+.+++|+|+|+++++++.               ||.|++||
T Consensus       310 ~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d  387 (433)
T 3bws_A          310 SGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID  387 (433)
T ss_dssp             ECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence              778655 4545 8999999999999888774  7778999999999998888876               57999999


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC-CCcEEEEECCc
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK  409 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~  409 (536)
                      +.++      ..+..+.. ...+.+++|+|  .+|++++. |+.|++|++..
T Consensus       388 ~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          388 TTTD------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             TTTT------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCCC------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9887      44555544 45789999986  67887775 99999999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=5.6e-23  Score=209.19  Aligned_cols=308  Identities=12%  Similarity=0.083  Sum_probs=215.5

Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEEEeCCCcEEEEEc--ccCccceecccCccc
Q 009373          166 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGFIHCWRA--VEVLPHLFDISGSEK  242 (536)
Q Consensus       166 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~--~~~~~~~~~~~~~~~  242 (536)
                      ++|++.++++++.|++|.+||..+++.+.++. ++.....+++|++++|++++.|++|.+||+  .++.           
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-----------  213 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-----------  213 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-----------
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCc-----------
Confidence            78999999999999999999999999999887 555456667899999999999999999999  5532           


Q ss_pred             ccceEEeeCCccCEEEEEEe------CCEEEEEe-cCCeEEEEeCCCceEeEeeec------------cccEEEEe--ec
Q 009373          243 QNTQFRLWEHEGPITSLALD------LTRIYSGS-WDMTVRVWDRALLKCLKVLRH------------SDWVYGLA--PH  301 (536)
Q Consensus       243 ~~~~~~~~~h~~~v~~l~~~------~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~------------~~~v~~~~--~~  301 (536)
                        ....+. +...+..++|+      ++++++++ .+++|.+||..+++++..+..            ...+.++.  ++
T Consensus       214 --~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~  290 (543)
T 1nir_A          214 --KVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE  290 (543)
T ss_dssp             --EEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred             --EEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence              333444 34567888884      56788877 589999999999999888762            12566665  55


Q ss_pred             CCE-EEEec-CCcEEEEeCCCCcEEE--EEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceeeec
Q 009373          302 DTT-VASTS-GSDVYIWDTNSGCLLT--VVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       302 ~~~-l~~~~-d~~i~i~d~~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                      +.. +++.. ++.|.+||+.+.+.+.  .+  .+...+..+.|+|+|++++++ ..+++|.+||+.++      +.+..+
T Consensus       291 ~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg------~l~~~i  362 (543)
T 1nir_A          291 HPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALV  362 (543)
T ss_dssp             SSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEE
T ss_pred             CCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC------eEEEee
Confidence            554 44444 7999999999876544  33  356678899999999976654 56899999999988      444444


Q ss_pred             c----CCCCCeEEEEEcC---CeEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--
Q 009373          377 I----PHTGPVNSLAFEF---PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--  446 (536)
Q Consensus       377 ~----~h~~~v~~l~~~~---~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--  446 (536)
                      .    +|.+....+ ++|   ..++++. .|++|.|||+.+.....  ..          ......+.+|...+..+.  
T Consensus       363 ~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~--~~----------~~~v~~l~~~g~~~~~v~~~  429 (543)
T 1nir_A          363 DVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--YA----------WKKVAELQGQGGGSLFIKTH  429 (543)
T ss_dssp             ECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--TB----------TSEEEEEECSCSCCCCEECC
T ss_pred             ccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch--hc----------CeEEEEEEcCCCCceEEEcC
Confidence            3    365544444 343   3566665 58999999998621110  00          122334555554444444  


Q ss_pred             ecCCEEEEec-------CCCeEEEEeCCchhhHHHHH-H-hhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373          447 IGADRIVCGG-------EEGIVRIWNFSQAFEIERRA-R-ALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       447 ~~~~~l~sg~-------~Dg~i~vW~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      +++++|++++       .+++|.+||+.+++...+.. . ...++.   ...++..+++|+|+|..+.+..+..
T Consensus       430 pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~g~~~~~s~~~~  500 (543)
T 1nir_A          430 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLG---EGAKRVVQPEYNKRGDEVWFSVWNG  500 (543)
T ss_dssp             TTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC---SSCCEEEEEEECSSSSEEEEEEECC
T ss_pred             CCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccC---CCCCceEeccCCCCCCEEEEEeecC
Confidence            5556888887       27899999999987541110 0 000000   1135677999999999999876643

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=4.4e-22  Score=202.58  Aligned_cols=306  Identities=12%  Similarity=0.055  Sum_probs=213.2

Q ss_pred             cccCCccceeeee-CccccEEEEEEecCCCEEEEEeCCCcEEEEEC--CCCceeeeeCCCCc-eEEEEec----CCCEEE
Q 009373          143 KTFLGRYSIDVLY-GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHL--EDGFSIASSKPLGC-TIRAVAA----DKKLLV  214 (536)
Q Consensus       143 ~~~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~--~~~~~~~~~~~~~~-~v~~~~~----~~~~l~  214 (536)
                      +.......+.++. +|.  +.+++|+|+|++|++++.|++|++||+  .+++.+.++..+.. .-.+++|    ++++++
T Consensus       164 ~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~  241 (543)
T 1nir_A          164 VDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTI  241 (543)
T ss_dssp             EETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred             EECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEE
Confidence            3333334567777 444  889999999999999999999999999  88888888765433 3356678    999999


Q ss_pred             EEeC-CCcEEEEEcccCccceecccCcccccceEEeeC----------C-ccCEEEEEEe--C-CEEEEEecCCeEEEEe
Q 009373          215 AGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE----------H-EGPITSLALD--L-TRIYSGSWDMTVRVWD  279 (536)
Q Consensus       215 sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------h-~~~v~~l~~~--~-~~l~s~s~dg~i~iwd  279 (536)
                      +++. +++|.+||..+++             ....+..          | ...+.++.+.  + ..+++...++.|.+||
T Consensus       242 v~~~~~~~v~v~D~~t~~-------------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd  308 (543)
T 1nir_A          242 AGAYWPPQFAIMDGETLE-------------PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN  308 (543)
T ss_dssp             EEEEESSEEEEEETTTCC-------------EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred             EEEccCCeEEEEeccccc-------------cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence            9885 8999999987754             2222221          2 2368888883  3 4567788899999999


Q ss_pred             CCCceEeE--eeeccccEEE--EeecCCEEEEec--CCcEEEEeCCCCcEEEEEccc---cccceEEEEEeCC-CCEEEE
Q 009373          280 RALLKCLK--VLRHSDWVYG--LAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHT-GDFLFT  349 (536)
Q Consensus       280 ~~~~~~~~--~~~~~~~v~~--~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~~~~-~~~l~t  349 (536)
                      ..+.+.+.  .+.+...+..  ++|+++++++++  +++|.+||+.+++.+..+..+   |.+....+ ++|+ +..+++
T Consensus       309 ~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s  387 (543)
T 1nir_A          309 YKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWST  387 (543)
T ss_dssp             CTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred             ecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEe
Confidence            98866544  4444444544  458999766554  789999999999988887532   55444443 5777 566777


Q ss_pred             Ec-CCCcEEEEEcccCcc-ccccceeeeccCCCCCeEEEEEcC--CeEEEEe-------CCCcEEEEECCcccccCCCCC
Q 009373          350 GG-EDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-------GDGKLSLIDVRKLLRSGRPTS  418 (536)
Q Consensus       350 g~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-------~dg~i~vwd~~~~~~~~~~~~  418 (536)
                      +. .|++|.+||+.+... ....+.+.++.+|.+.+..++++|  ++|++++       .+++|.|||+.+.......  
T Consensus       388 ~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~--  465 (543)
T 1nir_A          388 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV--  465 (543)
T ss_dssp             EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE--
T ss_pred             ccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE--
Confidence            75 689999999987311 122478899999999999999987  6888887       2779999999986432110  


Q ss_pred             CCceeeEEeeCCCeeeeccccccEEEEEec--CCEEEEe-----cCCCeEEEEeCCchhhHHH
Q 009373          419 GKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCG-----GEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg-----~~Dg~i~vW~~~~~~~~~~  474 (536)
                             ..+... .-+..+...+..+.++  ++.++.+     +.|+.|.|||..+++++..
T Consensus       466 -------~~v~~~-~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  520 (543)
T 1nir_A          466 -------LPIAEW-ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  520 (543)
T ss_dssp             -------ECHHHH-HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             -------eechhh-cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence                   000000 0012334556666665  4555533     3589999999999877643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=3e-22  Score=197.70  Aligned_cols=269  Identities=13%  Similarity=0.050  Sum_probs=194.7

Q ss_pred             cccEEEEEEecCCC-EEEEEe----CCC----cEEEEEC--CCCcee--eeeCCCCceEEEEe--c--------------
Q 009373          158 TEAVLTVFVLASAK-LLFTSG----YDS----IVRMWHL--EDGFSI--ASSKPLGCTIRAVA--A--------------  208 (536)
Q Consensus       158 ~~~V~~v~~~~~~~-~l~sgs----~dg----~v~iwd~--~~~~~~--~~~~~~~~~v~~~~--~--------------  208 (536)
                      ...|....|.+.+. ++++|+    .||    +|++||+  .+++.+  ..+.+|...+..+.  +              
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~  141 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA  141 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence            34566667777664 666776    467    8999999  899877  44666766554332  1              


Q ss_pred             CCCEEEEEeCC------CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC---eEEE
Q 009373          209 DKKLLVAGGTD------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM---TVRV  277 (536)
Q Consensus       209 ~~~~l~sg~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg---~i~i  277 (536)
                      .+..++.++.+      +.|++||+..+              ....+.+|...|.+++|  +++.|++++.|+   .|++
T Consensus       142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~--------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~  207 (415)
T 2hqs_A          142 FRTRIAYVVQTNGGQFPYELRVSDYDGY--------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI  207 (415)
T ss_dssp             TTCEEEEEEECSSSSCCEEEEEEETTSC--------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             CCCEEEEEEecCCCCccceEEEEcCCCC--------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence            15566666654      79999998643              34566778999999999  778999999885   9999


Q ss_pred             EeCCCceEeEeeeccccEEEEe--ecCCEEE-Eec-CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373          278 WDRALLKCLKVLRHSDWVYGLA--PHDTTVA-STS-GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       278 wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~-~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                      ||+.+++......+...+.+++  |+++.|+ +++ ++  .|++||+.+++.. .+. .|...+.+++|+|+|++|++++
T Consensus       208 ~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s  285 (415)
T 2hqs_A          208 QTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTS  285 (415)
T ss_dssp             EETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEE
Confidence            9999998876555777777766  8899777 554 44  4999999998763 443 5788999999999999888887


Q ss_pred             C-CC--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC---CcEEEEECCcccccCCCCCCCcee
Q 009373          352 E-DG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD---GKLSLIDVRKLLRSGRPTSGKRVS  423 (536)
Q Consensus       352 ~-dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d---g~i~vwd~~~~~~~~~~~~~~~~~  423 (536)
                      . ++  .|.+||+.++.       ...+..|...+.+++|+|  ++|++++.+   +.|++||+.+....          
T Consensus       286 ~~~g~~~i~~~d~~~~~-------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~----------  348 (415)
T 2hqs_A          286 DQAGRPQVYKVNINGGA-------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----------  348 (415)
T ss_dssp             CTTSSCEEEEEETTSSC-------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE----------
T ss_pred             CCCCCcEEEEEECCCCC-------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE----------
Confidence            6 45  57777877662       234456777899999986  678777764   58999999874211          


Q ss_pred             eEEeeCCCeeeeccc-cccEEEEEecCCEEEEecCCC---eEEEEeCCch
Q 009373          424 RVIEVEPPQRMLHGF-ECNLLSVDIGADRIVCGGEEG---IVRIWNFSQA  469 (536)
Q Consensus       424 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~Dg---~i~vW~~~~~  469 (536)
                                .+..+ .....++++++++|++++.|+   .|++||+..+
T Consensus       349 ----------~l~~~~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~  388 (415)
T 2hqs_A          349 ----------VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  388 (415)
T ss_dssp             ----------ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             ----------EecCCCCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence                      11122 223344555666888888777   7999998754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=4.7e-21  Score=204.35  Aligned_cols=303  Identities=13%  Similarity=-0.028  Sum_probs=211.9

Q ss_pred             cccEEEEEEecCCCEEEEEeC-CC-----cEEEEECCCCceeeeeCCCC--------------------------ceEEE
Q 009373          158 TEAVLTVFVLASAKLLFTSGY-DS-----IVRMWHLEDGFSIASSKPLG--------------------------CTIRA  205 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~-dg-----~v~iwd~~~~~~~~~~~~~~--------------------------~~v~~  205 (536)
                      ...|.+++|+|||++|++++. |+     .|++||+.+++....+..+.                          ....+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456899999999999999998 88     99999999998766654332                          23457


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCc
Q 009373          206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALL  283 (536)
Q Consensus       206 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~  283 (536)
                      ++|||+.|++++. +.|.+||+.++..           .....+..|...+.+++|  ++++|++++ ++.|++||+.++
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~-----------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGK-----------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCST-----------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCc-----------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            7899999999887 9999999976510           012235567788999999  788888887 569999999988


Q ss_pred             eEeEeee-ccc------------------cEEEEeecCCEEEEec-CC--------------------------------
Q 009373          284 KCLKVLR-HSD------------------WVYGLAPHDTTVASTS-GS--------------------------------  311 (536)
Q Consensus       284 ~~~~~~~-~~~------------------~v~~~~~~~~~l~~~~-d~--------------------------------  311 (536)
                      +...... +..                  .-..++|+|+.|+.++ ++                                
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            7765544 222                  2245569999888876 44                                


Q ss_pred             -cEEEEeCCC-CcEEEEEcc-ccccceEEEEEeCCCCEEEEEcC-----CCcEEEEEcccCccccccceeeeccCCCC--
Q 009373          312 -DVYIWDTNS-GCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGE-----DGAIHMYEIINDCTEANVLLVATWIPHTG--  381 (536)
Q Consensus       312 -~i~i~d~~~-~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~--  381 (536)
                       .|.+||+.+ ++....... .|...+..++| |||++|++++.     ++.|++||+.++.      ....+..+..  
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~------~~~~~~~~~~~~  335 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ------QRVLAHETSPTW  335 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC------EEEEEEEECSSC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc------eEEEEEcCCCCc
Confidence             788999998 876544322 47788999999 99999987654     5679999998873      3333333332  


Q ss_pred             --CeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEE---EEEecCCEE-E
Q 009373          382 --PVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL---SVDIGADRI-V  453 (536)
Q Consensus       382 --~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~l-~  453 (536)
                        .+.+++|+|  +++++++.||.+.||.+....                  . ...+..+...+.   .++++++.| +
T Consensus       336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~------------------~-~~~l~~~~~~v~~~~~~s~dg~~l~~  396 (741)
T 2ecf_A          336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG------------------K-AAALTHGNWSVDELLAVDEKAGLAYF  396 (741)
T ss_dssp             CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS------------------C-EEESCCSSSCEEEEEEEETTTTEEEE
T ss_pred             CCcCCceEECCCCeEEEEecCCCccEEEEEcCCC------------------C-eeeeeecceEEEeEeEEeCCCCEEEE
Confidence              456888976  688888999988888765210                  1 122233333343   456677755 5


Q ss_pred             EecCCC--eEEEEeCCc-hhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEee
Q 009373          454 CGGEEG--IVRIWNFSQ-AFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       454 sg~~Dg--~i~vW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      +++.|+  .++||++.. +..+..+.    .       ......++|+|||+.++.....
T Consensus       397 ~~~~~~~~~~~l~~~~~~g~~~~~l~----~-------~~~~~~~~~spdg~~l~~~~~~  445 (741)
T 2ecf_A          397 RAGIESARESQIYAVPLQGGQPQRLS----K-------APGMHSASFARNASVYVDSWSN  445 (741)
T ss_dssp             EECSSCTTCBEEEEEETTCCCCEECC----C-------SCSEEEEEECTTSSEEEEEEEE
T ss_pred             EEeCCCCceEEEEEEEcCCCCeeecc----c-------CCCceEEEECCCCCEEEEEecC
Confidence            666666  899999864 32221111    0       1223578999999999875443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=1.4e-20  Score=185.71  Aligned_cols=254  Identities=11%  Similarity=-0.002  Sum_probs=189.5

Q ss_pred             eeeeCccccEEEEEEecC--------------CCEEEEEeCC------CcEEEEECCCCceeeeeCCCCceEEE--EecC
Q 009373          152 DVLYGHTEAVLTVFVLAS--------------AKLLFTSGYD------SIVRMWHLEDGFSIASSKPLGCTIRA--VAAD  209 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~--------------~~~l~sgs~d------g~v~iwd~~~~~~~~~~~~~~~~v~~--~~~~  209 (536)
                      ..+.+|...+..+++++.              +..++.++.+      +.|++||++. .....+..|...+.+  ++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            568899998888887751              5556655554      7999999974 455666666666654  5699


Q ss_pred             CCEEEEEeCCC---cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecCCe--EEEEeCC
Q 009373          210 KKLLVAGGTDG---FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMT--VRVWDRA  281 (536)
Q Consensus       210 ~~~l~sg~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~--i~iwd~~  281 (536)
                      |+.|++++.++   .|++||+.++.              ...+..|.+.+.+++|  +++.|+ +++.|+.  |++||+.
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~--------------~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGA--------------VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  255 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCC--------------EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCc--------------EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence            99999999885   99999997763              2346678889999999  677777 6666654  9999999


Q ss_pred             CceEeEeeeccccEEEEe--ecCCEEEEec--CC--cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC--
Q 009373          282 LLKCLKVLRHSDWVYGLA--PHDTTVASTS--GS--DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED--  353 (536)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~--~~~~~l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d--  353 (536)
                      +++......+...+.++.  |+++.|+.++  ++  .|.+||+.+++... +. .+...+.+++|+|+|++|++++.+  
T Consensus       256 ~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~spdG~~l~~~~~~~g  333 (415)
T 2hqs_A          256 SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDADVSSDGKFMVMVSSNGG  333 (415)
T ss_dssp             TCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred             CCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee-cCCCcccCeEECCCCCEEEEEECcCC
Confidence            888755445777777766  8999888776  34  68888998887433 32 366788999999999999888764  


Q ss_pred             -CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC---cEEEEECCcccccCCCCCCCceeeEEe
Q 009373          354 -GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG---KLSLIDVRKLLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       354 -g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~  427 (536)
                       +.|++||+.++.      . ..+..|. .+.+++|+|  .+|++++.++   .|++||+...                 
T Consensus       334 ~~~i~~~d~~~~~------~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-----------------  388 (415)
T 2hqs_A          334 QQHIAKQDLATGG------V-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-----------------  388 (415)
T ss_dssp             CEEEEEEETTTCC------E-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-----------------
T ss_pred             ceEEEEEECCCCC------E-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-----------------
Confidence             589999998872      2 3344554 899999986  6788888776   7999998642                 


Q ss_pred             eCCCeeeeccccccEEEEEecCC
Q 009373          428 VEPPQRMLHGFECNLLSVDIGAD  450 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~~~~  450 (536)
                         ....+.+|...|.++++++.
T Consensus       389 ---~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          389 ---FKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             ---CEEECCCSSSEEEEEEECCC
T ss_pred             ---cEEEeeCCCCCCcCCccccc
Confidence               22345667777888888764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.86  E-value=6.2e-20  Score=202.57  Aligned_cols=321  Identities=9%  Similarity=0.035  Sum_probs=224.3

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCC------CcEEEEECCCCceeeeeCCCCceE---------EEEecCCCEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYD------SIVRMWHLEDGFSIASSKPLGCTI---------RAVAADKKLLV  214 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~d------g~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~l~  214 (536)
                      ..+.+.+|...|.+++|+|||++||+++.+      ..|++|++.+++ ...+..|...+         .+++|||++++
T Consensus        44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~  122 (1045)
T 1k32_A           44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII  122 (1045)
T ss_dssp             CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred             cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence            357888999999999999999999988653      479999998876 56677777655         56679999777


Q ss_pred             EEeCC------CcEEEEEcccCccceecccCc------------------------------------ccccceEEeeCC
Q 009373          215 AGGTD------GFIHCWRAVEVLPHLFDISGS------------------------------------EKQNTQFRLWEH  252 (536)
Q Consensus       215 sg~~d------g~i~vwd~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~h  252 (536)
                      +++.+      ..|.+|++.++..........                                    ........+.+|
T Consensus       123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~  202 (1045)
T 1k32_A          123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM  202 (1045)
T ss_dssp             EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred             EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence            77754      458888877664321110000                                    000123345688


Q ss_pred             ccCEEEEEEeCCE-EEEEecCCeEEEEeCCC-ceEeEeee-cc-ccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEc
Q 009373          253 EGPITSLALDLTR-IYSGSWDMTVRVWDRAL-LKCLKVLR-HS-DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVN  328 (536)
Q Consensus       253 ~~~v~~l~~~~~~-l~s~s~dg~i~iwd~~~-~~~~~~~~-~~-~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~  328 (536)
                      .+.+.++.|.++. +++++.|+++.+|.+.. +.....+. +. ....+++|+|+.++.+.++.|.+||+...+ +..+.
T Consensus       203 ~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~-l~~l~  281 (1045)
T 1k32_A          203 STHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEK-IEKIE  281 (1045)
T ss_dssp             SSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCC-EEECC
T ss_pred             CCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceE-eeeec
Confidence            9999999996655 45677889999997653 33333443 22 234567799999999899999999995444 33443


Q ss_pred             c----------ccccceEEEEEe-CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC-CeEEEEEc-CCeEEE
Q 009373          329 G----------AHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG-PVNSLAFE-FPWLVS  395 (536)
Q Consensus       329 ~----------~~~~~i~~l~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~-~~~l~s  395 (536)
                      .          .|...+.+++|+ |+|++|++++ ++.|.+|++..+.       ...+..|.. .+..++|+ +..|++
T Consensus       282 ~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~sdg~~l~~  353 (1045)
T 1k32_A          282 IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-------VLKVPEPLRIRYVRRGGDTKVAFIH  353 (1045)
T ss_dssp             CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-------EEECSCCSCEEEEEECSSSEEEEEE
T ss_pred             cCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-------eEEccCCCcceEEeeeEcCCCeEEE
Confidence            2          134478999999 9999998887 7899999987762       233566777 88999997 347888


Q ss_pred             EeCCCcEE-EEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--ecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          396 AAGDGKLS-LIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       396 ~s~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ++.++.+. +||+.+...                    ..+.+|...+..+.  +++++|++++.|+.|++||+.++...
T Consensus       354 ~s~~~~l~~~~d~~~~~~--------------------~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~  413 (1045)
T 1k32_A          354 GTREGDFLGIYDYRTGKA--------------------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT  413 (1045)
T ss_dssp             EETTEEEEEEEETTTCCE--------------------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EECCCceEEEEECCCCCc--------------------eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceE
Confidence            88888888 889875311                    11123444455555  45569999999999999999987543


Q ss_pred             HHHHHhhhcccchhHHHhhhhccccccCCCCcceeEee
Q 009373          473 ERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      ...    .+      .......++|+|||+.+++++..
T Consensus       414 ~~~----~~------~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          414 VIE----RS------REAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             EEE----EC------SSSCCCCEEECTTSCEEEEEEEE
T ss_pred             Eec----cC------CCCCccceEECCCCCeEEEEecC
Confidence            211    00      11234688999999999887664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.84  E-value=3.6e-18  Score=163.30  Aligned_cols=278  Identities=8%  Similarity=-0.015  Sum_probs=182.5

Q ss_pred             EEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEEEEEeC-CCcEEEEEcccCccceecccCcc
Q 009373          165 FVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSE  241 (536)
Q Consensus       165 ~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~  241 (536)
                      .|.++++ .+++++.++.|.+||+.+++.+..+..+.. ...+++|+++.+++++. ++.|.+||+.++..         
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~---------   74 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPP---------   74 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSC---------
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCce---------
Confidence            3555544 577888899999999999988777654433 35566799986666655 89999999977631         


Q ss_pred             cccceEEeeCCccCEEEEEE--eCCEEEEEecCC---eEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEe-c-CCc
Q 009373          242 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM---TVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAST-S-GSD  312 (536)
Q Consensus       242 ~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~-~-d~~  312 (536)
                         ....+..+..+..+++|  ++++++++..++   .|.+||+.+++.+..+.......++.  |++++++++ . ++.
T Consensus        75 ---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  151 (331)
T 3u4y_A           75 ---KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSAN  151 (331)
T ss_dssp             ---EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTT
T ss_pred             ---eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCc
Confidence               13444455555555788  677888655553   89999999999988887555556655  888755554 4 578


Q ss_pred             -EEEEeCCCCcEEEEE---ccccccceEEEEEeCCCCEE-EEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEE
Q 009373          313 -VYIWDTNSGCLLTVV---NGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA  387 (536)
Q Consensus       313 -i~i~d~~~~~~~~~~---~~~~~~~i~~l~~~~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  387 (536)
                       +.+|++.....+...   .......+..++|+|+|+++ +++..++.|.+||+.++...   ..+..+.. ...+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~---~~~~~~~~-~~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI---TLLNAVGT-NNLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC---EEEEEEEC-SSCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc---ceeeeccC-CCCCceEE
Confidence             999998764433111   01234568999999999965 45557899999999877320   11444443 36678899


Q ss_pred             EcC--CeEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc---ccEEEEEecCCEE-EEecCCCe
Q 009373          388 FEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE---CNLLSVDIGADRI-VCGGEEGI  460 (536)
Q Consensus       388 ~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~l-~sg~~Dg~  460 (536)
                      |+|  ++|++++ .++.|.+||+.++....          +........ .....   ....++++++++| +++..++.
T Consensus       228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  296 (331)
T 3u4y_A          228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSF----------VKSFGHGLL-IDPRPLFGANQMALNKTETKLFISANISRE  296 (331)
T ss_dssp             ECTTSSEEEEECSSEEEEEEEETTTTEEEE----------EEEEECCCC-CCCGGGTTCCCEEECTTSSEEEEEETTTTE
T ss_pred             ECCCCCEEEEEEcCCCEEEEEECCCCceee----------ecccccccc-cCCCCcccccceEECCCCCEEEEecCCCCc
Confidence            986  5565554 57889999998753210          000000000 00111   1225667777765 56666789


Q ss_pred             EEEEeCCch
Q 009373          461 VRIWNFSQA  469 (536)
Q Consensus       461 i~vW~~~~~  469 (536)
                      |.+||+.+.
T Consensus       297 v~v~d~~~~  305 (331)
T 3u4y_A          297 LKVFTISGK  305 (331)
T ss_dssp             EEEEETTSC
T ss_pred             EEEEEecCC
Confidence            999999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.84  E-value=5.2e-19  Score=169.44  Aligned_cols=261  Identities=11%  Similarity=-0.008  Sum_probs=183.9

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeCC-C---CceEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccc
Q 009373          171 KLLFTSGYDSIVRMWHLEDGFSIASSKP-L---GCTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT  245 (536)
Q Consensus       171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~---~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  245 (536)
                      ++|++++.++.|.+||+.+++.+..+.. +   .....+++|+++.+ ++++.++.|.+||+.++..             
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-------------   68 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-------------   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-------------
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-------------
Confidence            4789999999999999999988877753 3   24556788999765 5566689999999977641             


Q ss_pred             eEEee-C----CccCEEEEEE--eCCEEEEEe------------cCCeEEEEeCCCceEeEeeeccccEEE--EeecCCE
Q 009373          246 QFRLW-E----HEGPITSLAL--DLTRIYSGS------------WDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTT  304 (536)
Q Consensus       246 ~~~~~-~----h~~~v~~l~~--~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~  304 (536)
                      ...+. +    |...+.+++|  +++++++++            .++.|.+||+.+++....+.....+.+  ++|++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  148 (337)
T 1pby_B           69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK  148 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC
T ss_pred             EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCE
Confidence            11121 1    1224567788  677888876            579999999999988877764444444  4588987


Q ss_pred             EEEecCCcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCCEEEEEcCCC------------------------cEEEE
Q 009373          305 VASTSGSDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGEDG------------------------AIHMY  359 (536)
Q Consensus       305 l~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~tg~~dg------------------------~i~iw  359 (536)
                      ++++ ++.|.+||+.+++....+..+. ...   +.|+|++..++..+.++                        .|.+|
T Consensus       149 l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  224 (337)
T 1pby_B          149 LYGL-GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM  224 (337)
T ss_dssp             EEEE-SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred             EEEe-CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEE
Confidence            7777 7899999999999887775332 122   37899988765554332                        46899


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG  437 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (536)
                      |+.++..    . ...+..+...+.+++|+|  .+++++  ++.|.+||+.+......                  ...+
T Consensus       225 d~~~~~~----~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~------------------~~~~  279 (337)
T 1pby_B          225 DLETGEM----A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR------------------VPLP  279 (337)
T ss_dssp             ETTTCCE----E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE------------------EECS
T ss_pred             eCCCCCc----e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce------------------ecCC
Confidence            9887732    1 233445667888999987  577777  79999999986422110                  0111


Q ss_pred             ccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHH
Q 009373          438 FECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       438 ~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      +.....++++++++|++++.|+.|++||+.+++.+.
T Consensus       280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~  315 (337)
T 1pby_B          280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence            223334555667788888999999999999876543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=8.1e-18  Score=162.33  Aligned_cols=233  Identities=11%  Similarity=0.036  Sum_probs=171.1

Q ss_pred             ccccEEEEEEecCCCEEEEEeC-------CCcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEE-EEeCCCcEEEEEc
Q 009373          157 HTEAVLTVFVLASAKLLFTSGY-------DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLV-AGGTDGFIHCWRA  227 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~-------dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~-sg~~dg~i~vwd~  227 (536)
                      ....+..++|+|+++++++++.       ++.|.+||..+++.+..+... ...-.+++++++.++ ++..++.|.+||.
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3456889999999998888874       568999999999887776432 233467789998554 5556799999999


Q ss_pred             ccCccceecccCcccccceEEeeCCcc---------CEEEEEE--eCCEEEEEe--cCCeEEEEeCCCceEeEeee-ccc
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEG---------PITSLAL--DLTRIYSGS--WDMTVRVWDRALLKCLKVLR-HSD  293 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~--~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~  293 (536)
                      .++.             ....+..+..         .+.++++  +++.+++++  .++.|.+||..+++....+. +..
T Consensus       119 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  185 (353)
T 3vgz_A          119 KTGE-------------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK  185 (353)
T ss_dssp             TTCC-------------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred             CCCe-------------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence            8764             2222222221         2677888  667777665  48899999999999988887 444


Q ss_pred             cEE--EEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcc---ccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCcc
Q 009373          294 WVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCT  366 (536)
Q Consensus       294 ~v~--~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~  366 (536)
                      .+.  .++++++.++++. ++.|.+||+.+++....+..   ++...+..++|+|+++++++++. ++.|.+||+.++  
T Consensus       186 ~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--  263 (353)
T 3vgz_A          186 MSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--  263 (353)
T ss_dssp             TCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--
T ss_pred             ccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--
Confidence            444  4558899888877 89999999999998877753   24556888999999997766655 599999999887  


Q ss_pred             ccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcc
Q 009373          367 EANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL  410 (536)
Q Consensus       367 ~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~  410 (536)
                          ..+..+....  ...++|+|  +++++++ .++.|.+||+.+.
T Consensus       264 ----~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          264 ----NILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ----CEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             ----cEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence                3333333322  25688876  5555555 6899999999874

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.83  E-value=7.6e-20  Score=194.45  Aligned_cols=304  Identities=8%  Similarity=-0.014  Sum_probs=200.3

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-----ceEEEEecCCCEEEEEeCC---------CcEEEE
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADKKLLVAGGTD---------GFIHCW  225 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~sg~~d---------g~i~vw  225 (536)
                      .+.+++|+|+|+++++ +.||+|++||+.+++....+..+.     ..-.+++|||++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            3567899999997776 789999999999998887777665     3456788999999999875         788899


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccE-------
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWV-------  295 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v-------  295 (536)
                      |+.++...           .+....+|...+..++|  +++.|++++. +.|++||+.+++...... +...+       
T Consensus        97 d~~~~~~~-----------~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~  164 (723)
T 1xfd_A           97 KIPHGDPQ-----------SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD  164 (723)
T ss_dssp             ESSSCCCE-----------ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred             ECCCCceE-----------eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccc
Confidence            99876421           11112245555778888  7888998886 899999999887765544 22222       


Q ss_pred             -------------EEEeecCCEEEEec-CC----------------------------------cEEEEeCCCCcEEEEE
Q 009373          296 -------------YGLAPHDTTVASTS-GS----------------------------------DVYIWDTNSGCLLTVV  327 (536)
Q Consensus       296 -------------~~~~~~~~~l~~~~-d~----------------------------------~i~i~d~~~~~~~~~~  327 (536)
                                   ..++|+|+.|+.++ ++                                  .|++||+.+++....+
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                         34459999988876 32                                  7999999988865555


Q ss_pred             ccc-----cccceEEEEEeCCCCEEEEEcC----CCcEEEEEcccCccccccceeeecc-CCCCCe----EEEEEcC--C
Q 009373          328 NGA-----HVGNTKSLARSHTGDFLFTGGE----DGAIHMYEIINDCTEANVLLVATWI-PHTGPV----NSLAFEF--P  391 (536)
Q Consensus       328 ~~~-----~~~~i~~l~~~~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v----~~l~~~~--~  391 (536)
                      ...     +...+..++|+|||+++++.+.    +..|++||+.++.      ....+. .+...+    ..++|+|  +
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~------~~~~~~~~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV------CTKKHEDESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC------EEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc------ceEEEEeccCCEEeccCCCceEcCCCC
Confidence            421     2567899999999998877643    3579999998873      222222 233333    3788986  4


Q ss_pred             eEEE--EeCCC------cEEEEEC-Ccccc--cCCCCCCCceeeEEeeCCCeeeeccccc--cEEEEEecCCEEEEec-C
Q 009373          392 WLVS--AAGDG------KLSLIDV-RKLLR--SGRPTSGKRVSRVIEVEPPQRMLHGFEC--NLLSVDIGADRIVCGG-E  457 (536)
Q Consensus       392 ~l~s--~s~dg------~i~vwd~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~-~  457 (536)
                      .|+.  +..++      .|.+||+ .+...  ...                  ...++..  .+.+++++++.|+..+ .
T Consensus       319 ~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~------------------l~~~~~~~~~~~~~spdg~~l~~~~~~  380 (723)
T 1xfd_A          319 KFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS------------------ITSGDWDVTKILAYDEKGNKIYFLSTE  380 (723)
T ss_dssp             SEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB------------------SCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             eEEEEEecccCCCcceeEEEEEeccCCCCccceeE------------------eecCCeEEEeeeEEcCCCCEEEEEEcC
Confidence            4553  55677      5667773 33210  110                  0111111  2246777788776544 4


Q ss_pred             C--CeEEEEeCCchhh--HHHHHHhhhcccchhHHHhhhhccccccCCCCccee
Q 009373          458 E--GIVRIWNFSQAFE--IERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  507 (536)
Q Consensus       458 D--g~i~vW~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  507 (536)
                      +  +.+++|++.....  .........       .......++|+|+|+.++..
T Consensus       381 ~~~~~~~l~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          381 DLPRRRQLYSANTVGNFNRQCLSCDLV-------ENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             SCTTCCEEEEECSSTTCCCBCSSTTSS-------SSCCCCEEEECTTSSEEEEE
T ss_pred             CCCcceEEEEEeCCCCCCcceeccccc-------CCCCeEEEEECCCCCEEEEE
Confidence            4  8899999875321  111100000       01224578999999988864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=4.2e-18  Score=163.53  Aligned_cols=269  Identities=12%  Similarity=0.148  Sum_probs=168.1

Q ss_pred             EEEEEeCCCcEEEEECC-CC--ceeeeeC-CCCceEEEEecCCCEEEEEeCC-CcEEEEEcc--cCccceecccCccccc
Q 009373          172 LLFTSGYDSIVRMWHLE-DG--FSIASSK-PLGCTIRAVAADKKLLVAGGTD-GFIHCWRAV--EVLPHLFDISGSEKQN  244 (536)
Q Consensus       172 ~l~sgs~dg~v~iwd~~-~~--~~~~~~~-~~~~~v~~~~~~~~~l~sg~~d-g~i~vwd~~--~~~~~~~~~~~~~~~~  244 (536)
                      ++++++.|+.|++|++. ++  +.+..+. .......+++|++++|++++.+ +.|.+|++.  ++.           ..
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-----------~~   75 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-----------LT   75 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-----------EE
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-----------ee
Confidence            44555789999999995 33  2333332 2233446778999988888887 999999986  332           11


Q ss_pred             ceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeC---CCceEeEeeeccccEEE--EeecCCEEEEec--CCcEE
Q 009373          245 TQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDR---ALLKCLKVLRHSDWVYG--LAPHDTTVASTS--GSDVY  314 (536)
Q Consensus       245 ~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~---~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~--d~~i~  314 (536)
                      ....+..+. .+..++|  +++++++++ .++.|.+||+   .+.+....+.....+.+  ++++++.+++++  ++.|.
T Consensus        76 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~  154 (343)
T 1ri6_A           76 FAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRIC  154 (343)
T ss_dssp             EEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred             eccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEE
Confidence            223333333 6788888  667776665 4889999999   44445555554444554  448888776664  79999


Q ss_pred             EEeCCC-CcEEE----EEccccccceEEEEEeCCCCEEEE-EcCCCcEEEEEcccCcccc-ccceeeeccC---CCCCeE
Q 009373          315 IWDTNS-GCLLT----VVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEA-NVLLVATWIP---HTGPVN  384 (536)
Q Consensus       315 i~d~~~-~~~~~----~~~~~~~~~i~~l~~~~~~~~l~t-g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~---h~~~v~  384 (536)
                      +||+.+ ++...    .........+..++|+|+++++++ +..++.|.+|++....... .......+..   ....+.
T Consensus       155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  234 (343)
T 1ri6_A          155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA  234 (343)
T ss_dssp             EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred             EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence            999987 65432    222223457889999999997654 4588999999996421100 0111221221   134677


Q ss_pred             EEEEcC--CeEE-EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec-cccccEEEEEecCCEEEEec-CCC
Q 009373          385 SLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH-GFECNLLSVDIGADRIVCGG-EEG  459 (536)
Q Consensus       385 ~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~-~Dg  459 (536)
                      +++|+|  ++|+ ++..++.|.+||+......        ...+       ..+. +.....+++++++++|++++ .|+
T Consensus       235 ~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~--------~~~~-------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          235 DIHITPDGRHLYACDRTASLITVFSVSEDGSV--------LSKE-------GFQPTETQPRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCC--------EEEE-------EEEECSSSCCCEEECTTSSEEEEECTTTC
T ss_pred             ceEECCCCCEEEEEecCCCEEEEEEEcCCCCc--------eEEe-------eeecCCCccceEEECCCCCEEEEecCCCC
Confidence            899986  4666 4557999999999731000        0000       0111 11123345556667676666 689


Q ss_pred             eEEEEeCC
Q 009373          460 IVRIWNFS  467 (536)
Q Consensus       460 ~i~vW~~~  467 (536)
                      .|.+|+++
T Consensus       300 ~v~v~~~d  307 (343)
T 1ri6_A          300 HISVYEIV  307 (343)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEc
Confidence            99999654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.83  E-value=1.2e-18  Score=192.28  Aligned_cols=317  Identities=10%  Similarity=0.012  Sum_probs=223.5

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC-------------CceEEEEe-cCCCEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-------------GCTIRAVA-ADKKLLVAG  216 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-------------~~~v~~~~-~~~~~l~sg  216 (536)
                      .+.+.+|. .+...+|+|+|+.|+.+. ++.|.+|++... .+..+..+             .....+++ |+|+.|+++
T Consensus       238 ~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~  314 (1045)
T 1k32_A          238 LRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV  314 (1045)
T ss_dssp             CEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE
T ss_pred             ceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEE
Confidence            34555665 466789999999998875 899999999544 34455443             24567889 999999988


Q ss_pred             eCCCcEEEEEcccCccceecccCcccccceEEeeCCcc-CEEEEEE-eCCEEEEEecCCeEE-EEeCCCceEeEeeeccc
Q 009373          217 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG-PITSLAL-DLTRIYSGSWDMTVR-VWDRALLKCLKVLRHSD  293 (536)
Q Consensus       217 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~-~~~~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~  293 (536)
                      + ++.|.+|++.++.              ...+..|.. .+..++| +++.|++++.++.+. +||+.+++......+..
T Consensus       315 ~-~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~  379 (1045)
T 1k32_A          315 S-RGQAFIQDVSGTY--------------VLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG  379 (1045)
T ss_dssp             E-TTEEEEECTTSSB--------------EEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC
T ss_pred             E-cCEEEEEcCCCCc--------------eEEccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCceEecCCcc
Confidence            8 8899999986542              233556666 7888888 567888888888898 99998876554444556


Q ss_pred             cEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC----------cEEEEE
Q 009373          294 WVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG----------AIHMYE  360 (536)
Q Consensus       294 ~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg----------~i~iwd  360 (536)
                      .+..++  |+++.+++++ ++.|++||+.+++...... +|.+.+.+++|+|+|++|++++.++          .|++||
T Consensus       380 ~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          380 NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence            676665  8999998887 7899999999998777664 5888899999999999998887654          899999


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeE-------------
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRV-------------  425 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------  425 (536)
                      +.++      . ...+..|...+.+++|+|  .+|++++.++...+|+..........  +.....+             
T Consensus       459 ~~~g------~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  529 (1045)
T 1k32_A          459 MEGR------K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV--VSKPFVIPLIPGSPNPTKLV  529 (1045)
T ss_dssp             TTTT------E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCS--CBEEEEEESSTTCCCGGGCC
T ss_pred             CCCC------c-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccccccc--CceeEEEEeCCCCCCccccC
Confidence            9876      3 556778888899999986  68999999888888886533211100  0000000             


Q ss_pred             ----------EeeC---CCeeeeccccccEEEEEecCC--EEEE-------------ecCCCeEEEEeCCchhhHHHHHH
Q 009373          426 ----------IEVE---PPQRMLHGFECNLLSVDIGAD--RIVC-------------GGEEGIVRIWNFSQAFEIERRAR  477 (536)
Q Consensus       426 ----------~~~~---~~~~~~~~~~~~v~~~~~~~~--~l~s-------------g~~Dg~i~vW~~~~~~~~~~~~~  477 (536)
                                ..+.   .....+..+...+..+.++++  ++++             .+.++.|.+||+.+++...    
T Consensus       530 ~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~----  605 (1045)
T 1k32_A          530 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----  605 (1045)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----
T ss_pred             cCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE----
Confidence                      0000   011223345555666666655  5664             2235678888888765210    


Q ss_pred             hhhcccchhHHHhhhhccccccCCCCcceeEe
Q 009373          478 ALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  509 (536)
                          ..      .....+++||||+.+++++-
T Consensus       606 ----l~------~~v~~~~~S~DG~~l~~~~~  627 (1045)
T 1k32_A          606 ----VK------NNLTDLRLSADRKTVMVRKD  627 (1045)
T ss_dssp             ----EE------EEEEEEEECTTSCEEEEEET
T ss_pred             ----ee------cCcceEEECCCCCEEEEEcC
Confidence                00      23467899999999997653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.82  E-value=4.8e-18  Score=180.02  Aligned_cols=282  Identities=11%  Similarity=0.039  Sum_probs=182.8

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-CCceEEEEecCCCEEEEEeCCCcEEEEEccc-----Ccc
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGTDGFIHCWRAVE-----VLP  232 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~-----~~~  232 (536)
                      ..|.+++|+|+ ..++.+. |+.|++||+.+++....... ....-.+++|+|+.|+++ .++.|++|++.+     +..
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence            56999999999 6555554 59999999998876544332 122335788999999985 789999999987     532


Q ss_pred             ceecccCcccc-cceEEeeCCccCEEEEEE--eCCEEEEEe---------------------------------cCCeEE
Q 009373          233 HLFDISGSEKQ-NTQFRLWEHEGPITSLAL--DLTRIYSGS---------------------------------WDMTVR  276 (536)
Q Consensus       233 ~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~s~s---------------------------------~dg~i~  276 (536)
                      ........... ........+.+.+.++.|  |+++|++++                                 .+..|.
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            11100000000 000000111223578888  788899887                                 446899


Q ss_pred             EEeCCCceEeEeee---ccccEEEEe--ecCCEEEEec-CC-----cEEEEeCCCCcEEEEEc-ccccc---ceEEEEEe
Q 009373          277 VWDRALLKCLKVLR---HSDWVYGLA--PHDTTVASTS-GS-----DVYIWDTNSGCLLTVVN-GAHVG---NTKSLARS  341 (536)
Q Consensus       277 iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l~~~~-d~-----~i~i~d~~~~~~~~~~~-~~~~~---~i~~l~~~  341 (536)
                      +||+.+++......   +...+.++.  |+++.+++++ +.     .|.+||+.+++....+. ..+..   .+..+.|+
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s  318 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL  318 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence            99999988655442   455666665  8999888765 54     89999999994443332 11222   24678999


Q ss_pred             C--CCCEEEEEcCCCcEEEEEcc-cCccccccceeeeccCCCCCeEE-EEEcC--CeEEEEe-CCC----cEEEEECCcc
Q 009373          342 H--TGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNS-LAFEF--PWLVSAA-GDG----KLSLIDVRKL  410 (536)
Q Consensus       342 ~--~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~-l~~~~--~~l~s~s-~dg----~i~vwd~~~~  410 (536)
                      |  +|+++++++.||.+++|++. ++      ..+..+..|...+.+ ++|+|  +.|+.++ .++    .|..||+.+.
T Consensus       319 p~~dg~~l~~~~~~g~~~l~~~~~~~------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          319 PGSNNQFIWQSRRDGWNHLYLYDTTG------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             TTCSSEEEEEECTTSSCEEEEEETTS------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             cCCCCEEEEEEccCCccEEEEEECCC------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            9  99999999999999999987 33      345666778888877 79986  4565544 444    5666676553


Q ss_pred             cccCCCCCCCceeeEEeeCCCeeeeccccccEE--EEEecCCEEEEecCC----CeEEEEeCCchh
Q 009373          411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLL--SVDIGADRIVCGGEE----GIVRIWNFSQAF  470 (536)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~D----g~i~vW~~~~~~  470 (536)
                      ...                   ...  +...+.  ++++++++++.++.+    +.|++||+.+++
T Consensus       393 ~~~-------------------~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          393 KTK-------------------DLT--PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CCE-------------------ESC--CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             Cce-------------------ecc--CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            110                   011  222334  444555666655333    569999998875

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=6.9e-18  Score=174.56  Aligned_cols=227  Identities=11%  Similarity=0.038  Sum_probs=163.2

Q ss_pred             cccEEEEEEecCCCEEEEEeC-CCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeC---CCcEEEEEccc--
Q 009373          158 TEAVLTVFVLASAKLLFTSGY-DSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGT---DGFIHCWRAVE--  229 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~---dg~i~vwd~~~--  229 (536)
                      ..+|++++|+|||+.||+++. ||+++||++++++.......+...+..+.  |+ +.+++++.   +....+|.+..  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            557999999999999999887 99999999976655443333334565554  67 67777765   45567766543  


Q ss_pred             CccceecccCcccccceEEee-CCccCEEEEEEeCCE-EEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEE
Q 009373          230 VLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDLTR-IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVAS  307 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~  307 (536)
                      ..            ... .+. .+...+.+++++++. +++.+.++.+.+||+.+++......+...-..++|+|+.+++
T Consensus       100 ~g------------~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~  166 (582)
T 3o4h_A          100 PG------------EEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAG  166 (582)
T ss_dssp             TT------------CCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEE
T ss_pred             CC------------ccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEE
Confidence            11            011 121 112225566667753 344444455559999998877666655544456699999997


Q ss_pred             ec-C----CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC--cEEEEEcccCccccccceeeeccCCC
Q 009373          308 TS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG--AIHMYEIINDCTEANVLLVATWIPHT  380 (536)
Q Consensus       308 ~~-d----~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~  380 (536)
                      ++ +    ..|++||+.+++.. .+. .|.+.+..++|+|||+.|+++..+|  .|++||+.++      ... .+.+|.
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~------~~~-~~~~~~  237 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG------SVE-DLELPS  237 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC------CEE-ECCCSC
T ss_pred             EEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC------cEE-EccCCC
Confidence            66 5    57999999988765 443 5888899999999999999888888  8999999887      333 566777


Q ss_pred             CCeEEEE--------EcC--CeEEEEeCCCcEEEEEC
Q 009373          381 GPVNSLA--------FEF--PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       381 ~~v~~l~--------~~~--~~l~s~s~dg~i~vwd~  407 (536)
                      ..+..++        |+|  .++++++.||.+++|++
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            7777777        976  58889999999999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=6e-18  Score=158.57  Aligned_cols=231  Identities=11%  Similarity=0.033  Sum_probs=167.5

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCC-CceeeeeCCCC-ce--EEEEecCCCEEEEEe--CCCcEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GFSIASSKPLG-CT--IRAVAADKKLLVAGG--TDGFIHC  224 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~-~~~~~~~~~~~-~~--v~~~~~~~~~l~sg~--~dg~i~v  224 (536)
                      ...+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++.......+. ..  ..+++|+++.|++++  .++...+
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred             eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence            446677999999999999999999987 78999999999 87766665553 33  367789999999998  4456666


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeC--CCceEeEeeeccccEEEEe
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDR--ALLKCLKVLRHSDWVYGLA  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~v~~~~  299 (536)
                      |.+....            .....+..+ ..+..++|  +++.|+ +++.|+.+++|++  .+++......+...+.++.
T Consensus       113 ~~~~~~~------------~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          113 YLLPSTG------------GTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPD  179 (297)
T ss_dssp             EEEETTC------------CCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             EEEECCC------------CceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccce
Confidence            6553211            012223333 34888888  667666 7889999999985  4455444444667777766


Q ss_pred             --ecCCEEEEec--CCcEEEEeCC-CCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----------CcEEEEEccc
Q 009373          300 --PHDTTVASTS--GSDVYIWDTN-SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----------GAIHMYEIIN  363 (536)
Q Consensus       300 --~~~~~l~~~~--d~~i~i~d~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----------g~i~iwd~~~  363 (536)
                        |+++.++.++  ++.+.+|++. .+.....+. .|...+..++|+|+|++|++++.+           +.|.+||+.+
T Consensus       180 ~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          180 YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             ECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             ECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence              7888776554  7888999876 455555554 477889999999999999888776           5699999987


Q ss_pred             CccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG  400 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg  400 (536)
                      +..    ..+..+.+|...+.+++|+|  .+|++++.|.
T Consensus       259 ~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          259 GNV----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CSC----EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCc----eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            632    33445557888999999986  5777776653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=2e-17  Score=159.54  Aligned_cols=258  Identities=12%  Similarity=0.062  Sum_probs=180.4

Q ss_pred             eEEEEecCCCEEEEEeC-------CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEE-EEEec
Q 009373          202 TIRAVAADKKLLVAGGT-------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI-YSGSW  271 (536)
Q Consensus       202 ~v~~~~~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~  271 (536)
                      .-.+++++++.+++++.       ++.|.+||..++.             ....+. ....+..+++  +++.+ ++...
T Consensus        44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~  109 (353)
T 3vgz_A           44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------------VTQAIH-NDLKPFGATINNTTQTLWFGNTV  109 (353)
T ss_dssp             EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------------EEEEEE-ESSCCCSEEEETTTTEEEEEETT
T ss_pred             cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------------EEEEEe-cCCCcceEEECCCCCEEEEEecC
Confidence            34567799998888774       5689999987763             222222 2233566777  66755 45566


Q ss_pred             CCeEEEEeCCCceEeEeeeccc----------cEEEE--eecCCEEEEec---CCcEEEEeCCCCcEEEEEccccccceE
Q 009373          272 DMTVRVWDRALLKCLKVLRHSD----------WVYGL--APHDTTVASTS---GSDVYIWDTNSGCLLTVVNGAHVGNTK  336 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~~~~~~~----------~v~~~--~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~i~  336 (536)
                      ++.|.+||..+++.+..+....          .+.++  +++++.++++.   ++.|.+||+.+++.+..+. .+...+.
T Consensus       110 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~  188 (353)
T 3vgz_A          110 NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMST  188 (353)
T ss_dssp             TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCC
T ss_pred             CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccc
Confidence            8999999999999888776321          14444  48888766654   6789999999999888875 2455688


Q ss_pred             EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc----CCCCCeEEEEEcC--CeEEEEeC-CCcEEEEECCc
Q 009373          337 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI----PHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRK  409 (536)
Q Consensus       337 ~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~----~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~  409 (536)
                      .++|+|+|+++++++.++.|.+||+.++.      .+..+.    ++...+.+++|+|  +++++++. ++.|.+||+.+
T Consensus       189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  262 (353)
T 3vgz_A          189 GLALDSEGKRLYTTNADGELITIDTADNK------ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN  262 (353)
T ss_dssp             CCEEETTTTEEEEECTTSEEEEEETTTTE------EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT
T ss_pred             eEEECCCCCEEEEEcCCCeEEEEECCCCe------EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            99999999999999999999999998873      333332    3566788899986  56666655 59999999987


Q ss_pred             ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHH
Q 009373          410 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRM  488 (536)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~  488 (536)
                      +....                   .+.........++++++ .+++...++.|.+||..+++.+.....           
T Consensus       263 ~~~~~-------------------~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-----------  312 (353)
T 3vgz_A          263 GNILA-------------------KVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-----------  312 (353)
T ss_dssp             CCEEE-------------------EEECSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-----------
T ss_pred             CcEEE-------------------EEEcCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-----------
Confidence            42211                   11111123356777777 556666899999999998765543211           


Q ss_pred             HhhhhccccccCCCCcceeEee
Q 009373          489 RRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       489 ~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      ......++|+|+|+.+.+....
T Consensus       313 ~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          313 PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCCeEEEcCCCCEEEEEEcc
Confidence            1235789999999988776554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=1.3e-17  Score=165.16  Aligned_cols=215  Identities=19%  Similarity=0.222  Sum_probs=146.3

Q ss_pred             CcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccc----cceEEeeCCccC
Q 009373          180 SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ----NTQFRLWEHEGP  255 (536)
Q Consensus       180 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~  255 (536)
                      +.+++|+....     +.......+++++++.++++|+.+| +++|+.......  ........    ........+.+.
T Consensus        23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQ--NKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCC--CCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhh--cccccCcccccccCccccccCCCc
Confidence            45777664311     2233456677778888888888777 777775432100  00000000    001112246778


Q ss_pred             EEEEEE--eCCEEE----EEecCCeEEEEeCCCc--------eE---eEeee-ccccEEEEe--ec-CCEEEEec-CCcE
Q 009373          256 ITSLAL--DLTRIY----SGSWDMTVRVWDRALL--------KC---LKVLR-HSDWVYGLA--PH-DTTVASTS-GSDV  313 (536)
Q Consensus       256 v~~l~~--~~~~l~----s~s~dg~i~iwd~~~~--------~~---~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i  313 (536)
                      |.+++|  ++++|+    +|+.|++|++||+.++        +.   ...+. |...|.+++  |+ +.++++++ |++|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            999999  678888    7889999999998765        22   23333 789999998  55 67888887 9999


Q ss_pred             EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc-------CCCCCeEEE
Q 009373          314 YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-------PHTGPVNSL  386 (536)
Q Consensus       314 ~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~h~~~v~~l  386 (536)
                      ++||++++..+.... +|...|++++|+|+|++|++|+.||.|++||++ +.      ....+.       .|...|.++
T Consensus       175 ~iwD~~~~~~~~~~~-~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~------~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          175 AVLQVTETVKVCATL-PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ------EKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             EEEEESSSEEEEEEE-CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC------EEEEECCCTTCCTTSCEEEEEE
T ss_pred             EEEEcCCCcceeecc-CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc------ccccccCCcccCCCCceeEEEE
Confidence            999999987665553 588999999999999999999999999999998 31      112221       244589999


Q ss_pred             EEcCC--eEE-EEeCCCc------EEEEECCcc
Q 009373          387 AFEFP--WLV-SAAGDGK------LSLIDVRKL  410 (536)
Q Consensus       387 ~~~~~--~l~-s~s~dg~------i~vwd~~~~  410 (536)
                      +|+++  +++ .++.||.      +++|++++.
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            99863  332 2444543      899999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.79  E-value=2.5e-17  Score=175.58  Aligned_cols=228  Identities=11%  Similarity=-0.013  Sum_probs=165.7

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      .|.+++|+|||++|++++. +.|.+||+.++.  ....+..+...+  .+++|||+.|+.++ ++.|++||+.++.... 
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~-  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ-  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE-
Confidence            4889999999999999986 999999999883  344555555444  45679999999887 4699999997763211 


Q ss_pred             cccCcccccceEEeeCCcc----------------CEEEEEE--eCCEEEEEecCC------------------------
Q 009373          236 DISGSEKQNTQFRLWEHEG----------------PITSLAL--DLTRIYSGSWDM------------------------  273 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~----------------~v~~l~~--~~~~l~s~s~dg------------------------  273 (536)
                                  ....+..                .+.+++|  |+++|++++.|+                        
T Consensus       187 ------------~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          187 ------------LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             ------------CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             ------------eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence                        1111111                2467788  788899888776                        


Q ss_pred             ---------eEEEEeCCC-ceEeEee---eccccEEEEe-ecCCEEEEec------CCcEEEEeCCCCcEEEEEcccccc
Q 009373          274 ---------TVRVWDRAL-LKCLKVL---RHSDWVYGLA-PHDTTVASTS------GSDVYIWDTNSGCLLTVVNGAHVG  333 (536)
Q Consensus       274 ---------~i~iwd~~~-~~~~~~~---~~~~~v~~~~-~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~  333 (536)
                               .|.+||+.+ ++.....   .+...+..++ |+|+.|+.+.      +..|.+||+.+++....+.. +..
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~~~  333 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-TSP  333 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE-ECS
T ss_pred             CCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc-CCC
Confidence                     889999988 7765443   2445555433 9999888654      35699999999987776642 332


Q ss_pred             ----ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEE-EEcC--CeEE-EEeCCC--cEE
Q 009373          334 ----NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL-AFEF--PWLV-SAAGDG--KLS  403 (536)
Q Consensus       334 ----~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~--~~l~-s~s~dg--~i~  403 (536)
                          .+..++|+|+|+++++++.||.++||.+....     . ...+..|...|..+ .|+|  +.|+ +++.++  .++
T Consensus       334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-----~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~  407 (741)
T 2ecf_A          334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG-----K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQ  407 (741)
T ss_dssp             SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS-----C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE
T ss_pred             CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC-----C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEE
Confidence                45688999999999999999999999886431     3 55667788888887 5876  4554 555555  899


Q ss_pred             EEECCc
Q 009373          404 LIDVRK  409 (536)
Q Consensus       404 vwd~~~  409 (536)
                      ||++..
T Consensus       408 l~~~~~  413 (741)
T 2ecf_A          408 IYAVPL  413 (741)
T ss_dssp             EEEEET
T ss_pred             EEEEEc
Confidence            999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.79  E-value=2.8e-17  Score=157.14  Aligned_cols=241  Identities=9%  Similarity=0.040  Sum_probs=164.5

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeC-CCcEEEEECCCCce-eeeeCCCCceE--EEEecCCCEEEEEeCCC---c
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGY-DSIVRMWHLEDGFS-IASSKPLGCTI--RAVAADKKLLVAGGTDG---F  221 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~-dg~v~iwd~~~~~~-~~~~~~~~~~v--~~~~~~~~~l~sg~~dg---~  221 (536)
                      .....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..+..+.  .+++|++++++++..++   .
T Consensus        31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  109 (331)
T 3u4y_A           31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFN  109 (331)
T ss_dssp             CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCE
T ss_pred             ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCccc
Confidence            3455666666777 9999999997666665 89999999999887 66555444433  47789999999666553   8


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEE-EecCCe-EEEEeCCCceEe-----Eeeecc
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYS-GSWDMT-VRVWDRALLKCL-----KVLRHS  292 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s-~s~dg~-i~iwd~~~~~~~-----~~~~~~  292 (536)
                      |.+||+.++.             ....+. +.....+++|  +++++++ ...++. |.+|++.....+     ..+...
T Consensus       110 i~v~d~~~~~-------------~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  175 (331)
T 3u4y_A          110 MQSYSFLKNK-------------FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG  175 (331)
T ss_dssp             EEEEETTTTE-------------EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred             EEEEECCCCC-------------eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence            9999997653             222232 3345688899  5555554 455588 999998754332     222233


Q ss_pred             ccEEEEe--ecCCEEEEe-c-CCcEEEEeCCCCcE---EEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccC
Q 009373          293 DWVYGLA--PHDTTVAST-S-GSDVYIWDTNSGCL---LTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIIND  364 (536)
Q Consensus       293 ~~v~~~~--~~~~~l~~~-~-d~~i~i~d~~~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~  364 (536)
                      .....+.  |++++++++ . ++.|.+||+.+++.   +..+.  ....+..++|+|+|+++++++ .++.|.+||+.++
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            3445544  889865544 4 78999999999987   77664  446778999999999776654 5788999999887


Q ss_pred             ccccccceeeeccCC----C---CCeEEEEEcC--CeEEEEe-CCCcEEEEECCcc
Q 009373          365 CTEANVLLVATWIPH----T---GPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKL  410 (536)
Q Consensus       365 ~~~~~~~~~~~~~~h----~---~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~  410 (536)
                      ...    .+..+..+    .   .....++|+|  .+|++++ .++.|.+||+...
T Consensus       254 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          254 TLS----FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             EEE----EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             cee----eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            321    12221111    1   2235688976  5665555 5679999999763

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=1.4e-17  Score=156.01  Aligned_cols=248  Identities=12%  Similarity=0.039  Sum_probs=169.0

Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC-ceEeEeee-
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-  290 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~-  290 (536)
                      .++.|++|++||+.++.              ...+..|...|.+++|  ++++|++++ ++.|.+||+.+ ++...... 
T Consensus        17 ~~~~~~~i~~~d~~~~~--------------~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRK--------------MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG   81 (297)
T ss_dssp             -CCCCEEEEEEETTTTE--------------EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT
T ss_pred             CCCcceeEEEEeCCCCc--------------eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc
Confidence            35678999999987652              3345568889999999  678888876 88999999998 77766554 


Q ss_pred             c-cccEEE--EeecCCEEEEec-C----CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE-EEcCCCcEEEEEc
Q 009373          291 H-SDWVYG--LAPHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEI  361 (536)
Q Consensus       291 ~-~~~v~~--~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-tg~~dg~i~iwd~  361 (536)
                      + ...+.+  ++|+++.++++. +    ..|..+++.+++ ...+.  +...+..++|+|+++.|+ +++.++.+++|++
T Consensus        82 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~  158 (297)
T 2ojh_A           82 FATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM  158 (297)
T ss_dssp             TCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             cccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence            2 245544  458999888877 2    345556666655 33342  333588999999999877 7888999999997


Q ss_pred             ccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373          362 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  438 (536)
Q Consensus       362 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (536)
                      ....     .....+..|...+.+++|+|  .+|+.++ .++.+.+|++....                  .....+..+
T Consensus       159 ~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~  215 (297)
T 2ojh_A          159 DIDS-----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG------------------SSVERITDS  215 (297)
T ss_dssp             ETTT-----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS------------------SCEEECCCC
T ss_pred             ECCC-----CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC------------------CCcEEEecC
Confidence            5432     23455667888999999986  5666655 58999999986311                  111223334


Q ss_pred             cccEEEEE--ecCCEEEEecCC-----------CeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcc
Q 009373          439 ECNLLSVD--IGADRIVCGGEE-----------GIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTD  505 (536)
Q Consensus       439 ~~~v~~~~--~~~~~l~sg~~D-----------g~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  505 (536)
                      ...+..+.  +++++|++++.+           +.|++||+.+++....        ............+.|+|+|..++
T Consensus       216 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~--------~~~~~~~~~~~~~~~spdg~~l~  287 (297)
T 2ojh_A          216 AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL--------FDLFGGQGTMNSPNWSPDGDEFA  287 (297)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE--------EEEEESTTTSCSCCBCTTSSEEE
T ss_pred             CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee--------eccCCCCcccccceECCCCCEEE
Confidence            44455555  455688877765           5699999987643210        00001123456799999999999


Q ss_pred             eeEeec
Q 009373          506 QCSVAA  511 (536)
Q Consensus       506 ~~~~~~  511 (536)
                      +++.+.
T Consensus       288 ~~~~~~  293 (297)
T 2ojh_A          288 YVRYFP  293 (297)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            886653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.79  E-value=7.4e-17  Score=154.79  Aligned_cols=241  Identities=12%  Similarity=0.132  Sum_probs=163.0

Q ss_pred             eeCccccEEEEEEecCCCEEEEEeCC-CcEEEEECC--CCc--eeeeeCCC-CceEEEEecCCCEEEEEeC-CCcEEEEE
Q 009373          154 LYGHTEAVLTVFVLASAKLLFTSGYD-SIVRMWHLE--DGF--SIASSKPL-GCTIRAVAADKKLLVAGGT-DGFIHCWR  226 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~~~l~sgs~d-g~v~iwd~~--~~~--~~~~~~~~-~~~v~~~~~~~~~l~sg~~-dg~i~vwd  226 (536)
                      ...|...+.+++|+|++++|++++.+ +.|.+|++.  +++  .+..+..+ .....+++++++.+++++. ++.|.+||
T Consensus        33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d  112 (343)
T 1ri6_A           33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  112 (343)
T ss_dssp             EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence            34577889999999999999988886 999999997  554  33344322 3445677899998876665 88999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCC-ceEeEe----ee--ccccEE
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-LKCLKV----LR--HSDWVY  296 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~-~~~~~~----~~--~~~~v~  296 (536)
                      +..+.          .......+. ....+.+++|  +++.+++++ .++.|.+||+.+ ++....    +.  ....+.
T Consensus       113 ~~~~~----------~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~  181 (343)
T 1ri6_A          113 LEDGL----------PVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR  181 (343)
T ss_dssp             EETTE----------EEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred             CCCCc----------ccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence            84221          011222232 3345778888  567787777 899999999987 654322    22  333555


Q ss_pred             EEe--ecCCEEEEec--CCcEEEEeCCC--CcE--EEEEc---ccc--ccceEEEEEeCCCCEEE-EEcCCCcEEEEEcc
Q 009373          297 GLA--PHDTTVASTS--GSDVYIWDTNS--GCL--LTVVN---GAH--VGNTKSLARSHTGDFLF-TGGEDGAIHMYEII  362 (536)
Q Consensus       297 ~~~--~~~~~l~~~~--d~~i~i~d~~~--~~~--~~~~~---~~~--~~~i~~l~~~~~~~~l~-tg~~dg~i~iwd~~  362 (536)
                      .+.  |+++++++++  ++.|.+||+..  ++.  ...+.   .++  ...+..++|+|+|++|+ ++..++.|.+||+.
T Consensus       182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence            554  8888665443  78999999954  432  22221   111  23577899999998777 55579999999998


Q ss_pred             cCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECC
Q 009373          363 NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR  408 (536)
Q Consensus       363 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~  408 (536)
                      ...  .....+..+..+.. +.+++|+|  ++|++++ .++.|.+|++.
T Consensus       262 ~~~--~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          262 EDG--SVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             TTS--CCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCC--CceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            321  11133444444444 88999986  5777777 68999999664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.78  E-value=3.4e-18  Score=181.22  Aligned_cols=294  Identities=13%  Similarity=0.063  Sum_probs=187.0

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-eeeCCC-------------------CceEEEEecCCCEEEEEeCCC
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSKPL-------------------GCTIRAVAADKKLLVAGGTDG  220 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~-------------------~~~v~~~~~~~~~l~sg~~dg  220 (536)
                      +..+.|.  +..+++++.|+ | +||+.+++.+ ..+..+                   .....+++|+ +.++.+ .++
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~  101 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG  101 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence            3446777  66777778888 8 9999999773 332221                   2344556788 555555 459


Q ss_pred             cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCC-----ceEeEeee-cc
Q 009373          221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRAL-----LKCLKVLR-HS  292 (536)
Q Consensus       221 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~-~~  292 (536)
                      .|++||+.++.              ...+..+...+.+++|  +++.|+++ .|+.|++||+.+     ++...... +.
T Consensus       102 ~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~  166 (706)
T 2z3z_A          102 GLVGFDMLARK--------------VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT  166 (706)
T ss_dssp             EEEEEETTTTE--------------EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred             EEEEEECCCCc--------------eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence            99999997652              2334456677888888  77888884 789999999988     77665443 22


Q ss_pred             c----------------cEEEEeecCCEEEEec----------------------------------CCcEEEEeCCCCc
Q 009373          293 D----------------WVYGLAPHDTTVASTS----------------------------------GSDVYIWDTNSGC  322 (536)
Q Consensus       293 ~----------------~v~~~~~~~~~l~~~~----------------------------------d~~i~i~d~~~~~  322 (536)
                      .                .-..++|+|+.|+.++                                  +..|.+||+.+++
T Consensus       167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~  246 (706)
T 2z3z_A          167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK  246 (706)
T ss_dssp             TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred             CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence            2                2234559999988875                                  2569999999987


Q ss_pred             EEEEEcc-ccccceEEEEEeCCCCEEEEEcCCC-----cEEEEEcccCccccccceeeeccCCC---CCeEEEEEcC---
Q 009373          323 LLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVATWIPHT---GPVNSLAFEF---  390 (536)
Q Consensus       323 ~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~---~~v~~l~~~~---  390 (536)
                      ....... .|...+.+++|+|+|++|++++.++     .|++||+.++...   ..+.. ..+.   ..+.+++|+|   
T Consensus       247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~---~~~~~-~~~~~~~~~~~~~~~sp~~d  322 (706)
T 2z3z_A          247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV---RTLFV-ETDKHYVEPLHPLTFLPGSN  322 (706)
T ss_dssp             EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE---EEEEE-EECSSCCCCCSCCEECTTCS
T ss_pred             eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee---eEEEE-ccCCCeECccCCceeecCCC
Confidence            6544322 4667899999999999999887775     8999999877211   11111 1122   2346788876   


Q ss_pred             -CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE---EEEEecCCEE-EEecCCC----eE
Q 009373          391 -PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL---LSVDIGADRI-VCGGEEG----IV  461 (536)
Q Consensus       391 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l-~sg~~Dg----~i  461 (536)
                       .++++++.||.++||++...                  ......+..+...+   ..++++++.| ++++.++    .|
T Consensus       323 g~~l~~~~~~g~~~l~~~~~~------------------~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l  384 (706)
T 2z3z_A          323 NQFIWQSRRDGWNHLYLYDTT------------------GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHF  384 (706)
T ss_dssp             SEEEEEECTTSSCEEEEEETT------------------SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEE
T ss_pred             CEEEEEEccCCccEEEEEECC------------------CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEE
Confidence             48888889999999987621                  01111222333334   3455566655 4555555    67


Q ss_pred             EEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEe
Q 009373          462 RIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       462 ~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  509 (536)
                      ..|++.++.. ....       .    ......++|+|||+.++....
T Consensus       385 ~~~d~~~~~~-~~l~-------~----~~~~~~~~~spdg~~l~~~~~  420 (706)
T 2z3z_A          385 YCIDIKGGKT-KDLT-------P----ESGMHRTQLSPDGSAIIDIFQ  420 (706)
T ss_dssp             EEEETTCCCC-EESC-------C----SSSEEEEEECTTSSEEEEEEE
T ss_pred             EEEEcCCCCc-eecc-------C----CCceEEEEECCCCCEEEEEec
Confidence            7777766531 1110       0    112457899999999887544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.78  E-value=2.7e-17  Score=157.39  Aligned_cols=226  Identities=13%  Similarity=0.022  Sum_probs=165.8

Q ss_pred             cEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCC-C------CceEEEEecCCCEEEEEe------------CC
Q 009373          160 AVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKP-L------GCTIRAVAADKKLLVAGG------------TD  219 (536)
Q Consensus       160 ~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~-~------~~~v~~~~~~~~~l~sg~------------~d  219 (536)
                      .+..++|+|+++.+ ++++.++.|.+||+.+++.+..+.. +      .....+++++++.+++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            47889999999765 5566689999999999988776643 2      233467789999998886            57


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccc--cE
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSD--WV  295 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~v  295 (536)
                      +.|.+||+.++.             ....+.. ...+.+++|  ++++++++  ++.|.+||+.+++....+....  ..
T Consensus       115 ~~i~v~d~~~~~-------------~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~  178 (337)
T 1pby_B          115 TRVALYDAETLS-------------RRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE  178 (337)
T ss_dssp             CEEEEEETTTTE-------------EEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT
T ss_pred             ceEEEEECCCCc-------------EEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC
Confidence            999999997653             2222222 345667778  66777777  6899999999998887766222  22


Q ss_pred             EEEeecCCEEEEec--CC-----------------------cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEE
Q 009373          296 YGLAPHDTTVASTS--GS-----------------------DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG  350 (536)
Q Consensus       296 ~~~~~~~~~l~~~~--d~-----------------------~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg  350 (536)
                      ..+.|++..++...  ++                       .|.+||+.+++....-...+...+.+++|+|+|++++++
T Consensus       179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  258 (337)
T 1pby_B          179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence            25567777655444  22                       478999999887522223456678899999999999988


Q ss_pred             cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       351 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                        ++.|.+||+.++      ..+..+.. ...+.+++|+|  ++|++++.++.|.+||+.++
T Consensus       259 --~~~v~~~d~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          259 --YNVLESFDLEKN------ASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             --ESEEEEEETTTT------EEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             --CCeEEEEECCCC------cCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence              799999999887      33444332 34678999986  68888889999999999875

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=4.5e-17  Score=156.75  Aligned_cols=261  Identities=14%  Similarity=0.092  Sum_probs=171.7

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC---ceEEEEecCCCEEE-EEeCCCcEEEEEcccCccceeccc
Q 009373          163 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       163 ~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      .+++++++.++++++.+++|.+||+.+++.+..+..+.   ..-.+++++++.++ ++..++.|.+||+.++.       
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-------   76 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-------   76 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-------
Confidence            45678888999999999999999999998887775443   44567789998654 55678999999997753       


Q ss_pred             CcccccceEEee-CC-----ccCEEEEEE--eCCEEEEEecC------------CeEEEEeCCCceE---eEeeeccccE
Q 009373          239 GSEKQNTQFRLW-EH-----EGPITSLAL--DLTRIYSGSWD------------MTVRVWDRALLKC---LKVLRHSDWV  295 (536)
Q Consensus       239 ~~~~~~~~~~~~-~h-----~~~v~~l~~--~~~~l~s~s~d------------g~i~iwd~~~~~~---~~~~~~~~~v  295 (536)
                            ....+. .+     ...+..++|  +++++++++.+            +.|.+||+.+++.   +..+.+...+
T Consensus        77 ------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  150 (349)
T 1jmx_B           77 ------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV  150 (349)
T ss_dssp             ------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC
T ss_pred             ------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc
Confidence                  122222 11     223667788  67788888865            9999999988543   3344444455


Q ss_pred             EEE--eecCCEEEEecCCcEEEEeCCCCcEEEEEcccccc-----------------------ceEEEEEeCCCC-----
Q 009373          296 YGL--APHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVG-----------------------NTKSLARSHTGD-----  345 (536)
Q Consensus       296 ~~~--~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------------------~i~~l~~~~~~~-----  345 (536)
                      .++  +++++ ++++ ++.|.+||+.+++....+..+...                       ....+++++++.     
T Consensus       151 ~~~~~s~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          151 YLMRAADDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             CCEEECTTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             cceeECCCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            554  48888 4444 445999999999988777532200                       344566665542     


Q ss_pred             ------EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccccCCC
Q 009373          346 ------FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLRSGRP  416 (536)
Q Consensus       346 ------~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~  416 (536)
                            ++.....++.+++|++.               .+...+.+++|+|   ++++++  ++.|.+||+.+...... 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~-  290 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKTHTQEFA---------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA-  290 (349)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEE---------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE-
T ss_pred             cccceeEEEEeccCCcEEecccc---------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE-
Confidence                  12233344455555442               2455678888876   467766  88999999987432110 


Q ss_pred             CCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHH
Q 009373          417 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                                       ...++.....++++++++|++++.++.|++||..+++.+.
T Consensus       291 -----------------~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          291 -----------------ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             -----------------EECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             -----------------EcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence                             0112223344556666778888889999999998876543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.77  E-value=2.3e-16  Score=167.69  Aligned_cols=249  Identities=10%  Similarity=-0.042  Sum_probs=166.0

Q ss_pred             cccCCccceeeeeCccc---cEEEEEEecCCCEEEEEeCC---------CcEEEEECCCCceeeee---CCCCc--eEEE
Q 009373          143 KTFLGRYSIDVLYGHTE---AVLTVFVLASAKLLFTSGYD---------SIVRMWHLEDGFSIASS---KPLGC--TIRA  205 (536)
Q Consensus       143 ~~~~~~~~~~~l~~h~~---~V~~v~~~~~~~~l~sgs~d---------g~v~iwd~~~~~~~~~~---~~~~~--~v~~  205 (536)
                      +...+......+.+|..   .|.+++|+|||++|++++.+         +.+.+||+.+++. ..+   ..+..  ...+
T Consensus        42 ~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~  120 (723)
T 1xfd_A           42 WNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAG  120 (723)
T ss_dssp             BCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCC
T ss_pred             EECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccE
Confidence            33333344566677765   49999999999999999875         7888999998876 223   23332  3356


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCcc------------------CEEEEEE--eCCE
Q 009373          206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG------------------PITSLAL--DLTR  265 (536)
Q Consensus       206 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~l~~--~~~~  265 (536)
                      ++|||+.|+.++. +.|++||+.++...             .....+..                  .+.+++|  |++.
T Consensus       121 ~SPdG~~la~~~~-~~i~~~~~~~g~~~-------------~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~  186 (723)
T 1xfd_A          121 WGPKGQQLIFIFE-NNIYYCAHVGKQAI-------------RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR  186 (723)
T ss_dssp             BCSSTTCEEEEET-TEEEEESSSSSCCE-------------EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred             ECCCCCEEEEEEC-CeEEEEECCCCceE-------------EEecCCCCCceECcccceeEEEEeccCcceEEECCCCCE
Confidence            7899999999886 79999999876421             11112222                  2378888  7788


Q ss_pred             EEEEecCC----------------------------------eEEEEeCCCceEeEeee-c------cccEEEEe--ecC
Q 009373          266 IYSGSWDM----------------------------------TVRVWDRALLKCLKVLR-H------SDWVYGLA--PHD  302 (536)
Q Consensus       266 l~s~s~dg----------------------------------~i~iwd~~~~~~~~~~~-~------~~~v~~~~--~~~  302 (536)
                      |++++.|+                                  .|++||+.+++....+. +      ...+..++  |+|
T Consensus       187 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg  266 (723)
T 1xfd_A          187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST  266 (723)
T ss_dssp             EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS
T ss_pred             EEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCC
Confidence            98887653                                  79999999887645544 2      45566555  899


Q ss_pred             CEEEEec-C----CcEEEEeCCCCcEEEEEccccccce----EEEEEeCCCCEEEE--EcCCC------cEEEEEcccCc
Q 009373          303 TTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNT----KSLARSHTGDFLFT--GGEDG------AIHMYEIINDC  365 (536)
Q Consensus       303 ~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~i----~~l~~~~~~~~l~t--g~~dg------~i~iwd~~~~~  365 (536)
                      ++++... .    ..|.+||+.+++....+...+...+    ..++|+|+|+.|+.  +..++      .|.+||+....
T Consensus       267 ~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~  346 (723)
T 1xfd_A          267 KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS  346 (723)
T ss_dssp             EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred             eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC
Confidence            9887654 2    4699999999987766543344443    37899999997764  45677      45566632321


Q ss_pred             cccccceeeeccCCCCCeEE-EEEcC--CeEEEEeCC---CcEEEEECCc
Q 009373          366 TEANVLLVATWIPHTGPVNS-LAFEF--PWLVSAAGD---GKLSLIDVRK  409 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~~~v~~-l~~~~--~~l~s~s~d---g~i~vwd~~~  409 (536)
                      ..   .+...+..+...+.. ++|+|  +.|+..+.+   +.+++|++..
T Consensus       347 ~~---~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          347 SN---DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SS---CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             Cc---cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence            10   013334433444544 68976  577666554   7899999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.76  E-value=6.3e-16  Score=148.81  Aligned_cols=242  Identities=12%  Similarity=0.118  Sum_probs=161.4

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeC---CCcEEEEECCCCc--eeeeeC--CCCceEEEEecCCCEEEEEe-CCCcEEE
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGY---DSIVRMWHLEDGF--SIASSK--PLGCTIRAVAADKKLLVAGG-TDGFIHC  224 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~---dg~v~iwd~~~~~--~~~~~~--~~~~~v~~~~~~~~~l~sg~-~dg~i~v  224 (536)
                      ....+...+..++|+|+|+ |++++.   ++.|.+|++.++.  .+..+.  .....-.+++|++++|++++ .++.|.+
T Consensus        34 ~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v  112 (347)
T 3hfq_A           34 GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV  112 (347)
T ss_dssp             EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence            4455667788899999999 555544   6899999997765  333322  23334567889999888887 7899999


Q ss_pred             EEcccCccceecccCcccccceEEee---------CCccCEEEEEE--eCCEEEEEecCCeEEEEeCC-CceEeEe--ee
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLW---------EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA-LLKCLKV--LR  290 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~-~~~~~~~--~~  290 (536)
                      |++.....          ......+.         .+...+.+++|  +++.+++...++.|.+||+. +++....  +.
T Consensus       113 ~~~~~~g~----------~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~  182 (347)
T 3hfq_A          113 MKIAADGA----------LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLT  182 (347)
T ss_dssp             EEECTTSC----------EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred             EEeCCCCC----------eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEE
Confidence            99853210          11111111         12345888899  66766666678999999998 5543322  22


Q ss_pred             --ccccEEE--EeecCCEEEEec--CCcEEEEeCCC--CcE--EEEEcccc-----ccceEEEEEeCCCCEE-EEEcCCC
Q 009373          291 --HSDWVYG--LAPHDTTVASTS--GSDVYIWDTNS--GCL--LTVVNGAH-----VGNTKSLARSHTGDFL-FTGGEDG  354 (536)
Q Consensus       291 --~~~~v~~--~~~~~~~l~~~~--d~~i~i~d~~~--~~~--~~~~~~~~-----~~~i~~l~~~~~~~~l-~tg~~dg  354 (536)
                        ....+..  ++|++++++++.  ++.|.+|++..  ++.  +..+....     ...+..++|+|+|++| +++..++
T Consensus       183 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~  262 (347)
T 3hfq_A          183 MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN  262 (347)
T ss_dssp             CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT
T ss_pred             cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC
Confidence              2223444  448999666644  68899999874  543  22222111     1458899999999977 5556689


Q ss_pred             cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCC-CcEEEEECC
Q 009373          355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGD-GKLSLIDVR  408 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~d-g~i~vwd~~  408 (536)
                      .|.+|++....   ....+..+..+...+..++|+|  ++|++++.+ +.|.+|++.
T Consensus       263 ~v~v~~~~~~g---~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          263 TLAVFAVTADG---HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEECGGG---CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEECCCC---cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            99999997431   2245556666677789999986  578777764 899999654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=1.5e-15  Score=146.09  Aligned_cols=259  Identities=14%  Similarity=0.106  Sum_probs=157.5

Q ss_pred             CCcEEEEECC--CCceee--ee-CCCCceEEEEecCCCEEEEEeC---CCcEEEEEcccCccceecccCcccccceEEee
Q 009373          179 DSIVRMWHLE--DGFSIA--SS-KPLGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  250 (536)
Q Consensus       179 dg~v~iwd~~--~~~~~~--~~-~~~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  250 (536)
                      ++.|.+|+++  +++...  .. ........+++|+++ |++++.   ++.|.+|++.++.           ......+.
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~-----------~~~~~~~~   82 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT-----------AHKLNTVV   82 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE-----------EEEEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc-----------EEEeeeee
Confidence            4567777654  454322  12 122334467889999 555554   6899999996553           12233334


Q ss_pred             CCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCC-c--eEeEeeecc----------ccEEEE--eecCCEEEEec-CC
Q 009373          251 EHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRAL-L--KCLKVLRHS----------DWVYGL--APHDTTVASTS-GS  311 (536)
Q Consensus       251 ~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~-~--~~~~~~~~~----------~~v~~~--~~~~~~l~~~~-d~  311 (536)
                      .+...+..++|  ++++|++++ .++.|.+||+.. +  +.+..+.+.          ..+.++  +|+++++++.. ++
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            56677788888  677888887 789999999962 2  333333321          124444  48899666655 68


Q ss_pred             cEEEEeCC-CCcEEE--EEccccccceEEEEEeCCCCEEEE-EcCCCcEEEEEcccCccccccceeeeccCCC------C
Q 009373          312 DVYIWDTN-SGCLLT--VVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLLVATWIPHT------G  381 (536)
Q Consensus       312 ~i~i~d~~-~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~------~  381 (536)
                      .|.+||+. +++...  .+.......+..++|+|+|+++++ +..++.|.+|++.....  ....+..+....      .
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~  240 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG--AFTQLGIVKTIPADYTAHN  240 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT--EEEEEEEEESSCTTCCSCC
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC--ceEEeeeeeecCCCCCCCC
Confidence            89999998 554332  222223346788999999996555 56789999999885211  111222222221      4


Q ss_pred             CeEEEEEcC--CeE-EEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc--cccEEEEEecCCEEEEec
Q 009373          382 PVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF--ECNLLSVDIGADRIVCGG  456 (536)
Q Consensus       382 ~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~  456 (536)
                      .+..++|+|  ++| ++...++.|.+|++.....         ...       ...+..+  ...-+++++++++|++++
T Consensus       241 ~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~---------~~~-------~~~~~~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          241 GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH---------LTL-------IQQISTEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC---------EEE-------EEEEECSSSCCCEEEECTTSSEEEEEE
T ss_pred             cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc---------EEE-------eEEEecCCCCcCeEEECCCCCEEEEEE
Confidence            588999987  566 5566789999999873210         000       0111111  223345556666776665


Q ss_pred             C-CCeEEEEeCC
Q 009373          457 E-EGIVRIWNFS  467 (536)
Q Consensus       457 ~-Dg~i~vW~~~  467 (536)
                      . ++.|.+|+++
T Consensus       305 ~~~~~v~v~~~d  316 (347)
T 3hfq_A          305 QNTDNATLYARD  316 (347)
T ss_dssp             TTTTEEEEEEEC
T ss_pred             cCCCcEEEEEEe
Confidence            4 5999999554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.74  E-value=2.3e-16  Score=156.15  Aligned_cols=204  Identities=13%  Similarity=0.072  Sum_probs=145.5

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC----------ceeeee-----CCCCceEE--EEecCCCEEE----E
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASS-----KPLGCTIR--AVAADKKLLV----A  215 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~----------~~~~~~-----~~~~~~v~--~~~~~~~~l~----s  215 (536)
                      +...+..+++++++.++++|+.|+ +++|+....          ..+...     ..+...+.  ++++++++|+    +
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence            345688999999999999999988 899875311          011111     12333454  4558999999    7


Q ss_pred             EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeee-c
Q 009373          216 GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR-H  291 (536)
Q Consensus       216 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~  291 (536)
                      |+.|++|++||+.++.....  ...........+.+|.+.|.+++|+   +..|++++.||+|++||++++....... |
T Consensus       114 gs~d~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~  191 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAK--QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS  191 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTC--SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred             cCCCceEEEEEccccccCCc--CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence            88999999999876410000  0000011234566799999999993   5789999999999999999886654443 7


Q ss_pred             cccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc------ccccceEEEEEeCCCCEEEE-EcCCC------c
Q 009373          292 SDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFT-GGEDG------A  355 (536)
Q Consensus       292 ~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l~t-g~~dg------~  355 (536)
                      ...|.+++  |++++|++++ |+.|++||++ ++....+..      .|...+.+++|++++.++++ ++.||      .
T Consensus       192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            88899887  7899999888 8999999998 555555432      13348999999998877654 33443      3


Q ss_pred             EEEEEcccC
Q 009373          356 IHMYEIIND  364 (536)
Q Consensus       356 i~iwd~~~~  364 (536)
                      +++|+++..
T Consensus       271 v~i~~l~~~  279 (434)
T 2oit_A          271 VVMALLPKK  279 (434)
T ss_dssp             EEEEECCCT
T ss_pred             eEEEEeccC
Confidence            899999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=5.5e-15  Score=143.04  Aligned_cols=274  Identities=10%  Similarity=0.106  Sum_probs=169.5

Q ss_pred             CCEEEEEeC----CCcEEEEEC--CCCce--eeeeCCCCceEEEEecCCCEEEEEeCC----CcEEEEEcccCccceecc
Q 009373          170 AKLLFTSGY----DSIVRMWHL--EDGFS--IASSKPLGCTIRAVAADKKLLVAGGTD----GFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       170 ~~~l~sgs~----dg~v~iwd~--~~~~~--~~~~~~~~~~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~  237 (536)
                      ..+++.|++    ++.|.+|.+  .+++.  +...........+++|++++|++++.+    +.|.+|++....      
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~------   86 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK------   86 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT------
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC------
Confidence            445666654    568888876  45543  222323333446888999999999886    899999986521      


Q ss_pred             cCcccccceEEeeCCccCEEEEEEeCCEEEEEe-cCCeEEEEeCCCceEeEee----ec-----------cccEE--EEe
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS-WDMTVRVWDRALLKCLKVL----RH-----------SDWVY--GLA  299 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~----~~-----------~~~v~--~~~  299 (536)
                         ...........+......++++++++++++ .++.|.+|++.....+..+    .+           ...+.  .++
T Consensus        87 ---g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s  163 (361)
T 3scy_A           87 ---GTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT  163 (361)
T ss_dssp             ---TEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC
T ss_pred             ---CcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC
Confidence               001223334445566777888888777776 6889999999754333221    11           11223  445


Q ss_pred             ecCCEEEEec--CCcEEEEeCCCCcE------E------EEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccC
Q 009373          300 PHDTTVASTS--GSDVYIWDTNSGCL------L------TVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIIND  364 (536)
Q Consensus       300 ~~~~~l~~~~--d~~i~i~d~~~~~~------~------~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~  364 (536)
                      |++++++++.  ++.|.+|++.....      +      ......+...+..++|+|+|+++++++ .++.|.+||+.++
T Consensus       164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g  243 (361)
T 3scy_A          164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG  243 (361)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred             CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence            8998666554  68899998875431      1      122223556788999999999887766 6899999999865


Q ss_pred             ccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC--CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          365 CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG--DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       365 ~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                      .. .....+.....+...+..++|+|  ++|+++..  ++.|.+|++....       + ....+...      ..+...
T Consensus       244 ~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~-------g-~~~~~~~~------~~g~~~  308 (361)
T 3scy_A          244 ML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETN-------G-TLTKVGYQ------LTGIHP  308 (361)
T ss_dssp             EE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTT-------C-CEEEEEEE------ECSSCC
T ss_pred             ce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCC-------C-cEEEeeEe------cCCCCC
Confidence            21 11122233344556678999986  57766665  4899999986210       0 00000000      012223


Q ss_pred             cEEEEEecCCEEEEec-CCCeEEEEeCC
Q 009373          441 NLLSVDIGADRIVCGG-EEGIVRIWNFS  467 (536)
Q Consensus       441 ~v~~~~~~~~~l~sg~-~Dg~i~vW~~~  467 (536)
                      .-+++++++++|++++ .++.|.+|+++
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          309 RNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             ceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            3455666677776666 78999997665

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=7.2e-16  Score=163.83  Aligned_cols=232  Identities=10%  Similarity=0.094  Sum_probs=160.8

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-----eE--EEEecCCCEEEEEeCC---------CcEEE
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----TI--RAVAADKKLLVAGGTD---------GFIHC  224 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-----~v--~~~~~~~~~l~sg~~d---------g~i~v  224 (536)
                      ..++.|+|+|.+++++  |++|++||+.+++....+..|..     ..  .+++|||+.|+.++.+         +.+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            4578999999999986  99999999999998777766543     23  6788999999999886         56679


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccE-----
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWV-----  295 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v-----  295 (536)
                      ||+.++.              ...+..|.+.+...+|  ||+.|+.+ .|+.|++||+.+++..+...  +...+     
T Consensus        97 ~d~~~~~--------------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~  161 (740)
T 4a5s_A           97 YDLNKRQ--------------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT  161 (740)
T ss_dssp             EETTTTE--------------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred             EECCCCc--------------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence            9998763              2235567778999999  78888887 47899999998877544221  22222     


Q ss_pred             --------------EEEeecCCEEEEec-C-C-----------------------------------cEEEEeCCC---C
Q 009373          296 --------------YGLAPHDTTVASTS-G-S-----------------------------------DVYIWDTNS---G  321 (536)
Q Consensus       296 --------------~~~~~~~~~l~~~~-d-~-----------------------------------~i~i~d~~~---~  321 (536)
                                    ...+|+|+.|+... | +                                   +|++||+.+   +
T Consensus       162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~  241 (740)
T 4a5s_A          162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV  241 (740)
T ss_dssp             CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred             cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence                          34669999888764 2 1                                   488899988   7


Q ss_pred             c--EEEEEcc-----ccccceEEEEEeCCCCEEEEEcC----CCcEEEEEcccCccccccceeeec--cCCCCCeE----
Q 009373          322 C--LLTVVNG-----AHVGNTKSLARSHTGDFLFTGGE----DGAIHMYEIINDCTEANVLLVATW--IPHTGPVN----  384 (536)
Q Consensus       322 ~--~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~----  384 (536)
                      +  ....+..     +|...+..++|+|||+.++....    +..|.+||+.++........+..+  .+|...|.    
T Consensus       242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~  321 (740)
T 4a5s_A          242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP  321 (740)
T ss_dssp             SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred             CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence            3  2233322     36778999999999996665432    347999999887310000111111  34555444    


Q ss_pred             -EEEEcC--CeEE-EEe-CCC--cEEEEECCc
Q 009373          385 -SLAFEF--PWLV-SAA-GDG--KLSLIDVRK  409 (536)
Q Consensus       385 -~l~~~~--~~l~-s~s-~dg--~i~vwd~~~  409 (536)
                       ...|+|  +.|+ ..+ .+|  .|++||+.+
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence             678876  4555 555 344  578888765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.71  E-value=1.1e-14  Score=140.83  Aligned_cols=242  Identities=10%  Similarity=0.131  Sum_probs=158.1

Q ss_pred             ccccEEEEEEecCCCEEEEEeCC----CcEEEEECCC--Cc--eeeeeCCCCceEEEEecCCCEEEEEe-CCCcEEEEEc
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYD----SIVRMWHLED--GF--SIASSKPLGCTIRAVAADKKLLVAGG-TDGFIHCWRA  227 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~d----g~v~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~l~sg~-~dg~i~vwd~  227 (536)
                      |...+..++|+|++++|++++.+    +.|.+|++..  ++  .+.....+......++.+++.|++++ .++.|.+|++
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~  127 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPI  127 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEB
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEe
Confidence            77788889999999999999886    7999998865  43  33334434444455555888777776 5789999998


Q ss_pred             ccCccceecccCcccccceEEe--------eCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCceE------e----
Q 009373          228 VEVLPHLFDISGSEKQNTQFRL--------WEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKC------L----  286 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~~~------~----  286 (536)
                      ....... .      .......        ..+...+.+++|  +++++++++ .++.|.+|++.....      +    
T Consensus       128 ~~~g~~~-~------~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          128 GQDGALL-P------ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             CTTSCBC-S------CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             CCCCcCc-c------cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            6532100 0      0000000        112344678888  667665554 589999998875431      1    


Q ss_pred             ----EeeeccccEEEE--eecCCEEEEec--CCcEEEEeCCCCcE--EEEEc--cccccceEEEEEeCCCCEEEEEcCC-
Q 009373          287 ----KVLRHSDWVYGL--APHDTTVASTS--GSDVYIWDTNSGCL--LTVVN--GAHVGNTKSLARSHTGDFLFTGGED-  353 (536)
Q Consensus       287 ----~~~~~~~~v~~~--~~~~~~l~~~~--d~~i~i~d~~~~~~--~~~~~--~~~~~~i~~l~~~~~~~~l~tg~~d-  353 (536)
                          ........+..+  +|++++++++.  ++.|.+||+.+++.  +..+.  ..+...+..++|+|+|++|+++..+ 
T Consensus       201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~  280 (361)
T 3scy_A          201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK  280 (361)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred             cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence                112233444544  48998776655  78999999987754  22222  1233457899999999988766654 


Q ss_pred             -CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECC
Q 009373          354 -GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVR  408 (536)
Q Consensus       354 -g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~  408 (536)
                       +.|.+|++....  .....+..+.. ...+.+++|+|  ++|++++ .++.|.+|++.
T Consensus       281 ~~~i~v~~~~~~~--g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          281 ADGVAIFKVDETN--GTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             SCEEEEEEECTTT--CCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEEEcCCC--CcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence             899999996321  11123444433 55778999986  6788777 67899997654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.69  E-value=7.3e-15  Score=143.60  Aligned_cols=243  Identities=11%  Similarity=-0.004  Sum_probs=158.8

Q ss_pred             ceeeeeCccccEEE-----EEEecCCCEEEEEeC-CCc--EEEEECCCCceeeeeCCCCceE--EEEecCCCEEEEEeCC
Q 009373          150 SIDVLYGHTEAVLT-----VFVLASAKLLFTSGY-DSI--VRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTD  219 (536)
Q Consensus       150 ~~~~l~~h~~~V~~-----v~~~~~~~~l~sgs~-dg~--v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~d  219 (536)
                      .+..+..|...+..     .+|+|||++|+.++. ++.  |.+||+.+++.......+...+  ..++|+++.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            45677777776666     889999999998887 674  8888999988777666655443  4788999999999999


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEE----------------------EecCC
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYS----------------------GSWDM  273 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s----------------------~s~dg  273 (536)
                      +.|++||+.++..             ......+...+....+    ++..++.                      ...+.
T Consensus       102 ~~l~~~d~~~g~~-------------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (388)
T 3pe7_A          102 RNLMRVDLATLEE-------------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC  168 (388)
T ss_dssp             TEEEEEETTTCCE-------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred             CeEEEEECCCCcc-------------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence            9999999987642             2222333443433333    4555553                      22457


Q ss_pred             eEEEEeCCCceEeEeeeccccEEEEe--e-cCCEEEEec-C------CcEEEEeCCCCcEEEEEccccc-cceEEEEEeC
Q 009373          274 TVRVWDRALLKCLKVLRHSDWVYGLA--P-HDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAHV-GNTKSLARSH  342 (536)
Q Consensus       274 ~i~iwd~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~-~~i~~l~~~~  342 (536)
                      .|.+||+.+++......+...+..+.  | +++.++... +      ..|.++|+..++.. .+..... ..+....|+|
T Consensus       169 ~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp  247 (388)
T 3pe7_A          169 RLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVP  247 (388)
T ss_dssp             EEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECT
T ss_pred             eEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECC
Confidence            89999999987766666666666554  8 888887665 2      26888888766543 3322222 3577889999


Q ss_pred             CCCEEEEEcC-CC----cEEEEEcccCccccccceeeeccCCCCC---eEEEEEcC--CeEEEE---------eCCCcEE
Q 009373          343 TGDFLFTGGE-DG----AIHMYEIINDCTEANVLLVATWIPHTGP---VNSLAFEF--PWLVSA---------AGDGKLS  403 (536)
Q Consensus       343 ~~~~l~tg~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~h~~~---v~~l~~~~--~~l~s~---------s~dg~i~  403 (536)
                      +|+.|+..+. ++    .|++||+.++..    ..+..+.++...   ...+.|+|  ..|+..         ..+..|+
T Consensus       248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~  323 (388)
T 3pe7_A          248 DGSALVYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLY  323 (388)
T ss_dssp             TSSCEEEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEE
T ss_pred             CCCEEEEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEE
Confidence            9997755433 22    399999988742    223333321100   11124554  455533         4567899


Q ss_pred             EEECCcc
Q 009373          404 LIDVRKL  410 (536)
Q Consensus       404 vwd~~~~  410 (536)
                      +||+.+.
T Consensus       324 ~~d~~~~  330 (388)
T 3pe7_A          324 VFNMKNG  330 (388)
T ss_dssp             EEETTTT
T ss_pred             EEeccCC
Confidence            9999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.69  E-value=3.5e-16  Score=161.74  Aligned_cols=250  Identities=10%  Similarity=0.030  Sum_probs=169.4

Q ss_pred             ceEEEEecCCCEEEEEeC-CCcEEEEEcccCccceecccCcccccceEEeeCCc-cCEEEEEEeCC-EEEEEec---CCe
Q 009373          201 CTIRAVAADKKLLVAGGT-DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDLT-RIYSGSW---DMT  274 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~-~l~s~s~---dg~  274 (536)
                      ....+++|||+.|++++. ||++.+|++.++              ....+..|. ..+.+++|.++ .+++++.   +..
T Consensus        24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--------------~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~   89 (582)
T 3o4h_A           24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--------------ETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQ   89 (582)
T ss_dssp             EEEEEEEETTTEEEEEEEETTEEEEEEEETT--------------EEEECCSSCCSEECEECTTCSEEEEEEECSTTSCC
T ss_pred             hheeecCCCCCeEEEEEccCCceeEEEEcCC--------------CcEeeecccccccccccCCCCeEEEEeccCCCCcc
Confidence            444556799999999887 999999998554              233444555 58889999444 4555554   455


Q ss_pred             EEEEeCCC---ceEeEeee--ccccEEEEeecCC--EEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEE
Q 009373          275 VRVWDRAL---LKCLKVLR--HSDWVYGLAPHDT--TVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL  347 (536)
Q Consensus       275 i~iwd~~~---~~~~~~~~--~~~~v~~~~~~~~--~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l  347 (536)
                      ..+|.+..   +... .+.  ....+.+++++++  .++++.++.+.+||+.+++......  +..  .+++|+|||++|
T Consensus        90 ~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG~~l  164 (582)
T 3o4h_A           90 HALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRGDLI  164 (582)
T ss_dssp             EEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEETTEE
T ss_pred             eEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCCCEE
Confidence            56654432   2222 332  2333567778875  4444556667799999987655542  222  789999999999


Q ss_pred             EEEcCC----CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC--cEEEEECCcccccCCCCCC
Q 009373          348 FTGGED----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG--KLSLIDVRKLLRSGRPTSG  419 (536)
Q Consensus       348 ~tg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg--~i~vwd~~~~~~~~~~~~~  419 (536)
                      ++++.+    +.|++||+.++.       ...+..|.+.+..++|+|  +.|+++..++  .|++||+.++...      
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~-------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~------  231 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGG-------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE------  231 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCC-------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE------
T ss_pred             EEEEEcCCCCeEEEEEcCCCCC-------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE------
Confidence            988777    779999988772       335678888999999987  6888888888  8999999875322      


Q ss_pred             CceeeEEeeCCCeeeecccccc----------EEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHH
Q 009373          420 KRVSRVIEVEPPQRMLHGFECN----------LLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMR  489 (536)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~  489 (536)
                                    .+.++...          -.++++++..+++++.||.+++|++  ++...       .  .    .
T Consensus       232 --------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-------~--~----~  282 (582)
T 3o4h_A          232 --------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-------A--P----Q  282 (582)
T ss_dssp             --------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-------C--C----S
T ss_pred             --------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-------c--C----C
Confidence                          11122111          1226667778999999999999999  43322       0  0    0


Q ss_pred             hhhhccccccCCCCcceeEeecc
Q 009373          490 RRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       490 ~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                      .....++|+ +|+.+++++...+
T Consensus       283 ~~v~~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          283 GNHGRVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             SEEEEEEEE-TTEEEEEEEETTE
T ss_pred             CceEEEEec-CCEEEEEEcCCCC
Confidence            224578899 8888876655444

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=5.1e-15  Score=155.56  Aligned_cols=280  Identities=9%  Similarity=-0.056  Sum_probs=181.3

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEE--eCCCcEEEEECCCCceeeeeCCCCce-----------EEEEe--cCCCE-E
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTS--GYDSIVRMWHLEDGFSIASSKPLGCT-----------IRAVA--ADKKL-L  213 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sg--s~dg~v~iwd~~~~~~~~~~~~~~~~-----------v~~~~--~~~~~-l  213 (536)
                      ....+.+|...|..+++++++-+++++  +.++...||....+.....+..+...           ...++  ||++. |
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           15 DAALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             CHHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             CHHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            345677899999999999877677777  56889999996555555555555433           23344  89988 7


Q ss_pred             EEEeC-CCcEEEEEcc--c-CccceecccCcccccceEEeeC-----CccCEEEEEE--eCCEEEEEecC----------
Q 009373          214 VAGGT-DGFIHCWRAV--E-VLPHLFDISGSEKQNTQFRLWE-----HEGPITSLAL--DLTRIYSGSWD----------  272 (536)
Q Consensus       214 ~sg~~-dg~i~vwd~~--~-~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~--~~~~l~s~s~d----------  272 (536)
                      +.++. +..|.++++.  + +              ....+..     |...+.+++|  +++.|++++.|          
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~--------------~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGA--------------VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCC--------------CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             EEEECCCCeEEEEcCCCCCCC--------------CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            66554 5667777664  2 2              1223333     5677888899  78899988877          


Q ss_pred             CeEEEEeCCC------ceEeEee-eccccEE--EEeecCCEEEEec-C--------CcEEEEeCC-CC--cEEEEEcccc
Q 009373          273 MTVRVWDRAL------LKCLKVL-RHSDWVY--GLAPHDTTVASTS-G--------SDVYIWDTN-SG--CLLTVVNGAH  331 (536)
Q Consensus       273 g~i~iwd~~~------~~~~~~~-~~~~~v~--~~~~~~~~l~~~~-d--------~~i~i~d~~-~~--~~~~~~~~~~  331 (536)
                      ..|++||+.+      ++..... .+...+.  .++|+|+.|+.++ +        ..|.+||+. ++  .....+..++
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            5899999988      6655444 4344444  3559999988766 4        369999999 56  2334443445


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCc--EEEEEcccCccccccceeeeccCCCCC--------eEEEEEcC--CeEEEEeCC
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGA--IHMYEIINDCTEANVLLVATWIPHTGP--------VNSLAFEF--PWLVSAAGD  399 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~--------v~~l~~~~--~~l~s~s~d  399 (536)
                      ...+..+.|+|+|+++++++.++.  |.+||+.++.      .......+...        +.+++|++  .++++++. 
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-  313 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-  313 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence            788999999999998888888884  5555544441      11111222221        56788864  67888888 


Q ss_pred             CcEEEEEC--CcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE-EecCC--EEEEecCCCe--EEEEeCCchh
Q 009373          400 GKLSLIDV--RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV-DIGAD--RIVCGGEEGI--VRIWNFSQAF  470 (536)
Q Consensus       400 g~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~--~l~sg~~Dg~--i~vW~~~~~~  470 (536)
                      +.++||.+  .+..                    ...+..+...+..+ +++++  ++++++.+..  |.+||+.+++
T Consensus       314 ~~~~l~~~d~~~~~--------------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          314 GAAVLGILDPESGE--------------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SSCEEEEEETTTTE--------------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CccEEEEEECCCCc--------------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            99999944  3321                    11223334445566 77777  4455565654  5555665654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.67  E-value=1.2e-14  Score=139.67  Aligned_cols=238  Identities=12%  Similarity=0.003  Sum_probs=154.6

Q ss_pred             ceeeeeCcc-ccEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceeeeeCCCC--------ceEEEEecCCCEEEEEeCC
Q 009373          150 SIDVLYGHT-EAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAADKKLLVAGGTD  219 (536)
Q Consensus       150 ~~~~l~~h~-~~V~~v~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~sg~~d  219 (536)
                      .+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++.+..+....        ..-.+++|+++++++++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  112 (349)
T 1jmx_B           33 VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP  112 (349)
T ss_dssp             EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred             EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccc
Confidence            345555443 2578899999998654 55678999999999998877664322        2446788999999998865


Q ss_pred             ------------CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceE
Q 009373          220 ------------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKC  285 (536)
Q Consensus       220 ------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~  285 (536)
                                  +.|.+||+.++..          ......+. +...+.+++|  +++ +++++  +.|.+||..+++.
T Consensus       113 ~~~~~~~~~~~~~~i~~~d~~~~~~----------~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~  178 (349)
T 1jmx_B          113 TQRLNDHYVVKPPRLEVFSTADGLE----------AKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY  178 (349)
T ss_dssp             EEECSSCEEECCCEEEEEEGGGGGG----------BCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE
T ss_pred             ccccccccccCCCeEEEEECCCccc----------cceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce
Confidence                        9999999977531          11122222 3345778888  566 66554  3499999999988


Q ss_pred             eEeeeccc-------------------------cEEEEe--ecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceE
Q 009373          286 LKVLRHSD-------------------------WVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTK  336 (536)
Q Consensus       286 ~~~~~~~~-------------------------~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~  336 (536)
                      ...+....                         ....+.  +++.......  ...+..+|..+++....-...+...+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (349)
T 1jmx_B          179 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF  258 (349)
T ss_dssp             EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcce
Confidence            77665221                         111111  1111000000  111223555555432221123556788


Q ss_pred             EEEEeC-CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          337 SLARSH-TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       337 ~l~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      .++++| ++++++++  ++.|.+||+.++      ..+..+.. ...+.+++|++  ++|++++.++.|.+||+.+.
T Consensus       259 ~~~~sp~dg~~l~~~--~~~v~~~d~~~~------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          259 TGLRSPKDPNQIYGV--LNRLAKYDLKQR------KLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEECSSCTTEEEEE--ESEEEEEETTTT------EEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             eeEecCCCCCEEEEE--cCeEEEEECccC------eEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence            999999 99999888  889999999887      34444332 34567899986  57888888999999999875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.66  E-value=3e-15  Score=158.90  Aligned_cols=297  Identities=11%  Similarity=0.032  Sum_probs=186.5

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-----ceEEEEecCCCEEEEEeC---------CCcEEEEEcc
Q 009373          163 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----CTIRAVAADKKLLVAGGT---------DGFIHCWRAV  228 (536)
Q Consensus       163 ~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~sg~~---------dg~i~vwd~~  228 (536)
                      +++|+|++.++++ +.|++|++||+.+++....+..+.     ....+++|||+.|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6789999965554 569999999999998877665542     456678899999999876         7899999998


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--cccc----------
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDW----------  294 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~----------  294 (536)
                      ++...           ....+   ...+.+++|  ||+.|++++ |+.|++||+.+++......  +...          
T Consensus        99 ~g~~~-----------~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           99 NGEFV-----------RGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             TTEEC-----------CSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred             CCccc-----------cceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence            76410           00111   245777888  788888875 7899999998887654332  2221          


Q ss_pred             ---------EEEEeecCCEEEEec-CC----------------------------------cEEEEeCCCCcEE--EEEc
Q 009373          295 ---------VYGLAPHDTTVASTS-GS----------------------------------DVYIWDTNSGCLL--TVVN  328 (536)
Q Consensus       295 ---------v~~~~~~~~~l~~~~-d~----------------------------------~i~i~d~~~~~~~--~~~~  328 (536)
                               -..++|+|+.|+.++ +.                                  .|++||+.+++..  ..+.
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                     244569999998876 31                                  7889999988752  1221


Q ss_pred             -----cccccceEEEEEeCCCCEEEEEcCC----CcEEEEE----cccCccccccceeeec----cCCCCCeE-----EE
Q 009373          329 -----GAHVGNTKSLARSHTGDFLFTGGED----GAIHMYE----IINDCTEANVLLVATW----IPHTGPVN-----SL  386 (536)
Q Consensus       329 -----~~~~~~i~~l~~~~~~~~l~tg~~d----g~i~iwd----~~~~~~~~~~~~~~~~----~~h~~~v~-----~l  386 (536)
                           .+|...+..++|+||++++++....    ..|.+||    +.++      .....+    .+|...+.     .+
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~  317 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW------DCPKTQEHIEESRTGWAGGFFVSTP  317 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE------ECCGGGEEEEECSSSCSSSSSCCCC
T ss_pred             CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC------ceEEEEecccccCCceEccccCCcc
Confidence                 2477789999999998877764432    2488888    6555      222233    35666666     78


Q ss_pred             EEcC--CeEE--EEeCCC--cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE-ecCCEEEEecC--
Q 009373          387 AFEF--PWLV--SAAGDG--KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD-IGADRIVCGGE--  457 (536)
Q Consensus       387 ~~~~--~~l~--s~s~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~--  457 (536)
                      .|+|  +.|+  ++..+|  .|.+||+.+...                    ..+..+...+..+. ++++.|+..+.  
T Consensus       318 ~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~--------------------~~lt~~~~~v~~~~~~d~~~i~~~~~~~  377 (719)
T 1z68_A          318 VFSYDAISYYKIFSDKDGYKHIHYIKDTVENA--------------------IQITSGKWEAINIFRVTQDSLFYSSNEF  377 (719)
T ss_dssp             EECTTSSCEEEEEECTTSCEEEEEESSCSTTC--------------------EECSCSSSCEEEEEEECSSEEEEEESCG
T ss_pred             EECCCCCeEEEEEEccCCceEEEEEECCCCce--------------------EecccCceEEEEEEEEeCCEEEEEEecC
Confidence            8976  4333  344565  466667654320                    11111222222211 15555544443  


Q ss_pred             ---CCeEEEEeCCc--hh-hHHHHHHhhhcccchhHHHhhhhccccccCCCCccee
Q 009373          458 ---EGIVRIWNFSQ--AF-EIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  507 (536)
Q Consensus       458 ---Dg~i~vW~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  507 (536)
                         ++.+++|.+..  +. ........+.+      .......+.|+|+|+.++..
T Consensus       378 ~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~------~~~~~~~~~~s~dg~~l~~~  427 (719)
T 1z68_A          378 EEYPGRRNIYRISIGSYPPSKKCVTCHLRK------ERCQYYTASFSDYAKYYALV  427 (719)
T ss_dssp             GGCTTCBEEEEEECSSSSCCEEESSTTTTT------TTBCBEEEEECGGGSSEEEE
T ss_pred             CCCCceEEEEEEeCCCCCCCceeccCccCC------CCCceEEEEECCCCCEEEEE
Confidence               48899998864  21 01111000000      01123467899999988854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.65  E-value=3.7e-15  Score=158.16  Aligned_cols=256  Identities=9%  Similarity=-0.017  Sum_probs=164.7

Q ss_pred             hccccCCccceeeeeCccc---cEEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcee--eeeCCCCceEEEE
Q 009373          141 RSKTFLGRYSIDVLYGHTE---AVLTVFVLASAKLLFTSGY---------DSIVRMWHLEDGFSI--ASSKPLGCTIRAV  206 (536)
Q Consensus       141 ~~~~~~~~~~~~~l~~h~~---~V~~v~~~~~~~~l~sgs~---------dg~v~iwd~~~~~~~--~~~~~~~~~v~~~  206 (536)
                      +.+...+......+.+|..   .|.+++|+|||++|++++.         |+.|++||+.+++.+  ..+. ......++
T Consensus        39 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~~~~~  117 (719)
T 1z68_A           39 VLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQYLCW  117 (719)
T ss_dssp             EEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBCCEEE
T ss_pred             EEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccccceE
Confidence            3344444444555666654   4999999999999998876         789999999998763  2222 23444678


Q ss_pred             ecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCE---------EEEEE--eCCEEEEEecCC--
Q 009373          207 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI---------TSLAL--DLTRIYSGSWDM--  273 (536)
Q Consensus       207 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------~~l~~--~~~~l~s~s~dg--  273 (536)
                      +|||+.|+.+. ++.|++|++.++........+.    ....+.+|...|         .+++|  ||+.|++++.|.  
T Consensus       118 SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~----~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~  192 (719)
T 1z68_A          118 SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR----ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD  192 (719)
T ss_dssp             CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB----TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred             CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC----cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence            89999999886 7899999998764321111110    001122332222         47888  788999888653  


Q ss_pred             --------------------------------eEEEEeCCCceEe---Ee-----e-eccccEEEEe--ecCCEEEEecC
Q 009373          274 --------------------------------TVRVWDRALLKCL---KV-----L-RHSDWVYGLA--PHDTTVASTSG  310 (536)
Q Consensus       274 --------------------------------~i~iwd~~~~~~~---~~-----~-~~~~~v~~~~--~~~~~l~~~~d  310 (536)
                                                      .|++||+.+++..   ..     + .+...+..++  |+++++++..+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~  272 (719)
T 1z68_A          193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK  272 (719)
T ss_dssp             SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred             CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence                                            7889999987753   11     1 1555666665  88877766442


Q ss_pred             -----CcEEEEe----CCCCcEEEEEc---cccccceE-----EEEEeCCCCEEE--EEcCCCc--EEEEEcccCccccc
Q 009373          311 -----SDVYIWD----TNSGCLLTVVN---GAHVGNTK-----SLARSHTGDFLF--TGGEDGA--IHMYEIINDCTEAN  369 (536)
Q Consensus       311 -----~~i~i~d----~~~~~~~~~~~---~~~~~~i~-----~l~~~~~~~~l~--tg~~dg~--i~iwd~~~~~~~~~  369 (536)
                           ..|.+||    +.+++....+.   .+|...+.     .+.|+|+|+.++  ++..+|.  |.+||+.++     
T Consensus       273 ~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~-----  347 (719)
T 1z68_A          273 RVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE-----  347 (719)
T ss_dssp             SSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST-----
T ss_pred             cccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC-----
Confidence                 2488999    87776543331   34666666     789999999554  4556665  555565554     


Q ss_pred             cceeeeccCCCCCeEEEEE-cCCeEEEEeCC-----CcEEEEECCc
Q 009373          370 VLLVATWIPHTGPVNSLAF-EFPWLVSAAGD-----GKLSLIDVRK  409 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d-----g~i~vwd~~~  409 (536)
                       . ...+..+...+..+.+ +++.|+..+.+     +.+++|.+..
T Consensus       348 -~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          348 -N-AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             -T-CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             -c-eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeC
Confidence             1 3344455556666544 44566666654     8899998764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=8e-14  Score=134.99  Aligned_cols=271  Identities=11%  Similarity=0.083  Sum_probs=162.4

Q ss_pred             EEEEEeCC--CcEEEEEC--CCCcee--eeeC-C--CCceEEEEecCCCEEEEEeCCCcEEEEEcc-cCccceecccCcc
Q 009373          172 LLFTSGYD--SIVRMWHL--EDGFSI--ASSK-P--LGCTIRAVAADKKLLVAGGTDGFIHCWRAV-EVLPHLFDISGSE  241 (536)
Q Consensus       172 ~l~sgs~d--g~v~iwd~--~~~~~~--~~~~-~--~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~~~~~~~  241 (536)
                      +++.|++.  +.|.+|++  .+++..  .... .  ....-.+++|++++|++++.+ .|.+|++. ++..         
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~---------   73 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI---------   73 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE---------
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE---------
Confidence            35566653  46777664  455432  2221 1  233457788999999999988 99999986 4421         


Q ss_pred             cccceEEeeCCccCEEEEEE--eCCE--EEEEe-------------cCCeEEEEeCC-CceEeEeee-----ccccEEEE
Q 009373          242 KQNTQFRLWEHEGPITSLAL--DLTR--IYSGS-------------WDMTVRVWDRA-LLKCLKVLR-----HSDWVYGL  298 (536)
Q Consensus       242 ~~~~~~~~~~h~~~v~~l~~--~~~~--l~s~s-------------~dg~i~iwd~~-~~~~~~~~~-----~~~~v~~~  298 (536)
                        ........+ +.+..+++  ++++  +++++             .+|++.+|++. .++....+.     +...+.++
T Consensus        74 --~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~  150 (365)
T 1jof_A           74 --VHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGM  150 (365)
T ss_dssp             --EEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEE
T ss_pred             --EEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEE
Confidence              011111111 12334566  5563  44553             68999999997 465544333     34456665


Q ss_pred             e--ecCCEEEEec--CCcEEEEeCC-CCcEE--EEEcc-ccccceEEEEEeCCCCEEEEEcC-CCcEEEEEccc--Cccc
Q 009373          299 A--PHDTTVASTS--GSDVYIWDTN-SGCLL--TVVNG-AHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIIN--DCTE  367 (536)
Q Consensus       299 ~--~~~~~l~~~~--d~~i~i~d~~-~~~~~--~~~~~-~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~--~~~~  367 (536)
                      .  |+|++++++.  ++.|++||+. +++..  ..+.. .|...+..++|+|+|+++++++. ++.|.+|++..  +...
T Consensus       151 ~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  230 (365)
T 1jof_A          151 VFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV  230 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            5  8999887765  5789999998 67653  22321 13567899999999998887765 78999998763  3110


Q ss_pred             cccceeeecc----CCCC------CeEEEE-EcC--CeEEEEeCC-C-----cEEEEECCc-ccccCCCCCCCceeeEEe
Q 009373          368 ANVLLVATWI----PHTG------PVNSLA-FEF--PWLVSAAGD-G-----KLSLIDVRK-LLRSGRPTSGKRVSRVIE  427 (536)
Q Consensus       368 ~~~~~~~~~~----~h~~------~v~~l~-~~~--~~l~s~s~d-g-----~i~vwd~~~-~~~~~~~~~~~~~~~~~~  427 (536)
                      .....+..+.    +|..      .+..++ |+|  ++|++++.+ +     .|.+|++.. +.          ...+..
T Consensus       231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~----------~~~~~~  300 (365)
T 1jof_A          231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS----------IEKQLF  300 (365)
T ss_dssp             EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC----------EEEEEE
T ss_pred             EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC----------EEEeee
Confidence            0001122222    2232      588999 987  577766543 2     899999862 21          000000


Q ss_pred             eCCCeeeeccccccEEEEEe---cCCEEEEecC-CCeEEEEeCCch
Q 009373          428 VEPPQRMLHGFECNLLSVDI---GADRIVCGGE-EGIVRIWNFSQA  469 (536)
Q Consensus       428 ~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~~-Dg~i~vW~~~~~  469 (536)
                      ..    ...+....-+++++   ++++|++++. ++.|.+|+++..
T Consensus       301 ~~----~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          301 LS----PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EE----ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ee----ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            00    00111223346777   7888888876 499999998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=3e-13  Score=126.11  Aligned_cols=231  Identities=13%  Similarity=0.109  Sum_probs=159.6

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC------CCceE--EEEe-cCCCEEEEEeC-CCcEEE
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP------LGCTI--RAVA-ADKKLLVAGGT-DGFIHC  224 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~------~~~~v--~~~~-~~~~~l~sg~~-dg~i~v  224 (536)
                      .+|-..+.+++++++++++++.+.++.|.+||.. ++.+..+..      +....  .++. +++.++++... ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4667789999999999999988899999999987 666655532      22233  3443 45555555533 899999


Q ss_pred             EEcccCccceecccCcccccceEEee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEE
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGL  298 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~  298 (536)
                      ||. ++.             ....+. .+...+.++++  +++.+++...++.|.+||.. ++....+.   +...+.++
T Consensus       105 ~d~-~g~-------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i  169 (286)
T 1q7f_A          105 YNQ-YGQ-------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGV  169 (286)
T ss_dssp             ECT-TSC-------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEE
T ss_pred             ECC-CCc-------------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEE
Confidence            994 332             122221 23456888998  55667777778999999964 55555554   23446666


Q ss_pred             e--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCcccccccee
Q 009373          299 A--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCTEANVLLV  373 (536)
Q Consensus       299 ~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~~~~~~~~  373 (536)
                      +  ++++++++.. ++.|++||. +++.+..+.. ++...+..++++++|.++++...++ .|.+||....       .+
T Consensus       170 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-------~~  241 (286)
T 1q7f_A          170 VVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-------LI  241 (286)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-------EE
T ss_pred             EECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-------EE
Confidence            5  7788777766 789999997 4555666532 2236789999999999888888776 9999995432       33


Q ss_pred             eeccCC--CCCeEEEEEcC-CeEEEEeCCCcEEEEECCc
Q 009373          374 ATWIPH--TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       374 ~~~~~h--~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~  409 (536)
                      ..+..+  ...+.++++++ ..|+.++.|+.|++|++..
T Consensus       242 ~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          242 SALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             EEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            333333  23478999986 3455557899999999865

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=1.8e-13  Score=130.34  Aligned_cols=242  Identities=12%  Similarity=0.036  Sum_probs=167.3

Q ss_pred             cccEEEEEEecCCCEEEEEeCC------------------------CcEEEEECCCCceeeeeCC-C--CceEEEEecCC
Q 009373          158 TEAVLTVFVLASAKLLFTSGYD------------------------SIVRMWHLEDGFSIASSKP-L--GCTIRAVAADK  210 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~d------------------------g~v~iwd~~~~~~~~~~~~-~--~~~v~~~~~~~  210 (536)
                      -+.|.+++++|+|+++++.+.+                        ++|.+||..+++.+..+.. +  ...-+++.+++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3679999999999999988877                        4799999999988776642 2  22335666899


Q ss_pred             CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEe-cCCeEEEEeCCCceEe
Q 009373          211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGS-WDMTVRVWDRALLKCL  286 (536)
Q Consensus       211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s-~dg~i~iwd~~~~~~~  286 (536)
                      +++++...++.|++|+.......+..+.....   ...-.++......++++   +..+++.+ .++.|++|| .+++.+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~---~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ---PGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTB---CCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCC---CCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence            98888888999999997543111111100000   00002345568899994   34555554 589999999 567776


Q ss_pred             Eeeecc-----------ccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeC------CC
Q 009373          287 KVLRHS-----------DWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSH------TG  344 (536)
Q Consensus       287 ~~~~~~-----------~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~------~~  344 (536)
                      ..+...           .....++  ++ +.++++.. ++.|++||..+++.+..+.. .+...+.+++++|      +|
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g  258 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG  258 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC
Confidence            666411           1255555  66 66666666 78999999998998888742 3556788999999      33


Q ss_pred             CEEEEEcCCCcEEEEEcccCccccccceeeec---cCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          345 DFLFTGGEDGAIHMYEIINDCTEANVLLVATW---IPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       345 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      ...++...+..|++||+.++      ..+..+   .++...+.+|++++  ..+++...++.|++|++..
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g------~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSG------EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTC------CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             CEEeccCCCcEEEEEEcCCC------eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            33333334558999999887      444444   46777899999987  4677777889999999864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.64  E-value=2e-14  Score=140.45  Aligned_cols=292  Identities=11%  Similarity=0.028  Sum_probs=179.1

Q ss_pred             EEEECCCCceeeeeCCCCceEE-------EEecCCCEEEEEeC-CCc--EEEEEcccCccceecccCcccccceEEeeCC
Q 009373          183 RMWHLEDGFSIASSKPLGCTIR-------AVAADKKLLVAGGT-DGF--IHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  252 (536)
Q Consensus       183 ~iwd~~~~~~~~~~~~~~~~v~-------~~~~~~~~l~sg~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  252 (536)
                      ..++..++..+..+..+.....       +++|||+.|+.++. +|.  |.+||+.++.             ......++
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-------------~~~lt~~~   79 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-------------ATQLTEGR   79 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-------------EEECCCSS
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-------------eEEeeeCC
Confidence            3457777888888877765544       47899999998887 674  7788886653             22223344


Q ss_pred             ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEE----EEeecCCEEEEe-----------------
Q 009373          253 EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVY----GLAPHDTTVAST-----------------  308 (536)
Q Consensus       253 ~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~----~~~~~~~~l~~~-----------------  308 (536)
                      ...+....|  +++.|+.++.++.|++||+.+++...... +...+.    .+.++++.++..                 
T Consensus        80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence            444444566  78899999999999999999988776665 333332    234788887742                 


Q ss_pred             ------cCCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCC------CcEEEEEcccCccccccceeee
Q 009373          309 ------SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGED------GAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       309 ------~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~  375 (536)
                            .+..|.+||+.+++.....  .+...+..+.|+| +|+.|+....+      ..|.++|.....       ...
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~~  230 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-------MRK  230 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-------CEE
T ss_pred             hhhccCCcceEEEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-------eEE
Confidence                  1367999999998765544  3666789999999 99988877653      367777766541       223


Q ss_pred             ccCCC--CCeEEEEEcC--CeEEEEeC-CC----cEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE
Q 009373          376 WIPHT--GPVNSLAFEF--PWLVSAAG-DG----KLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD  446 (536)
Q Consensus       376 ~~~h~--~~v~~l~~~~--~~l~s~s~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  446 (536)
                      +..+.  ..+...+|+|  +.|+..+. ++    .|++||+.++...          .+...............  ..++
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----------~l~~~~~~~~~~~~~~~--~~~s  298 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR----------QLTSMPACSHLMSNYDG--SLMV  298 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE----------EEEEECCEEEEEECTTS--SEEE
T ss_pred             eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE----------EEEcCCCceeeeecCCC--CeEc
Confidence            33333  3577889986  45544333 22    3999999875321          11111110000000111  1567


Q ss_pred             ecCCEEEEe---------cCCCeEEEEeCCchhhHHHHHHhhhc-ccchhHHHhhhhccccccCCCCcceeEe
Q 009373          447 IGADRIVCG---------GEEGIVRIWNFSQAFEIERRARALRG-IRLENRMRRRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       447 ~~~~~l~sg---------~~Dg~i~vW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~  509 (536)
                      ++++.|+..         +.+..|++||+.++... ........ .............++|+|||+.++..+.
T Consensus       299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~  370 (388)
T 3pe7_A          299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD  370 (388)
T ss_dssp             EEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             cCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence            788866532         56779999999886531 11100000 0000000012467899999999997764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.63  E-value=3.3e-14  Score=137.74  Aligned_cols=238  Identities=10%  Similarity=0.089  Sum_probs=155.3

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECC-CCceeeeeC--CCC-ceEEEEecCCCE--EEEEe-------------
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLE-DGFSIASSK--PLG-CTIRAVAADKKL--LVAGG-------------  217 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~-~~~~~~~~~--~~~-~~v~~~~~~~~~--l~sg~-------------  217 (536)
                      +...+..++|+|++++|++++.+ .|.+|++. +++......  .+. ....+++|+++.  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            44568899999999999999988 99999997 776543221  111 122455688984  55553             


Q ss_pred             CCCcEEEEEccc-CccceecccCcccccceEEe-eCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCC-CceEe--Eee
Q 009373          218 TDGFIHCWRAVE-VLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRA-LLKCL--KVL  289 (536)
Q Consensus       218 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~-~~~~~--~~~  289 (536)
                      .+|++.+|++.. +..          ......+ ..+...+.+++|  ++++++++. .++.|.+||+. +++..  ..+
T Consensus       117 ~~g~v~v~~~~~~g~~----------~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~  186 (365)
T 1jof_A          117 FAGYGNVFSVSETGKL----------EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV  186 (365)
T ss_dssp             SCCEEEEEEECTTCCE----------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE
T ss_pred             CCceEEEEccCCCCcC----------cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE
Confidence            689999999863 320          0011111 124567889999  677787765 46899999998 67653  223


Q ss_pred             e---ccccEEEEe--ecCCEEEEec--CCcEEEEeCC--CCcEEE---EEcc------cccc------ceEEEE-EeCCC
Q 009373          290 R---HSDWVYGLA--PHDTTVASTS--GSDVYIWDTN--SGCLLT---VVNG------AHVG------NTKSLA-RSHTG  344 (536)
Q Consensus       290 ~---~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~--~~~~~~---~~~~------~~~~------~i~~l~-~~~~~  344 (536)
                      .   +...+..+.  |++++++++.  ++.|.+|++.  +++...   .+..      +|..      .+..++ |+|+|
T Consensus       187 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG  266 (365)
T 1jof_A          187 DAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG  266 (365)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred             ecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC
Confidence            2   244565554  8998887765  5889998764  565421   2211      1222      588999 99999


Q ss_pred             CEEEEEcCCC------cEEEEEcc-cCccccccceee-eccCCCCCeEEEEEcC-----CeEEEEeCC-CcEEEEECCc
Q 009373          345 DFLFTGGEDG------AIHMYEII-NDCTEANVLLVA-TWIPHTGPVNSLAFEF-----PWLVSAAGD-GKLSLIDVRK  409 (536)
Q Consensus       345 ~~l~tg~~dg------~i~iwd~~-~~~~~~~~~~~~-~~~~h~~~v~~l~~~~-----~~l~s~s~d-g~i~vwd~~~  409 (536)
                      ++|++++.+.      .|.+|++. ++.    ...+. ....+...+..++|+|     ++|++++.+ +.|.+|++..
T Consensus       267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~----~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          267 KYMFASSRANKFELQGYIAGFKLRDCGS----IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SEEEEEEEESSTTSCCEEEEEEECTTSC----EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CEEEEECCCCCCCCCCeEEEEEECCCCC----EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            9888765432      89999996 331    11111 1223444556677765     688888764 8999999865

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=7.9e-14  Score=134.49  Aligned_cols=286  Identities=12%  Similarity=0.087  Sum_probs=179.9

Q ss_pred             CCCEEEEEe------CCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeC----------CCcEEEEEcccCcc
Q 009373          169 SAKLLFTSG------YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGT----------DGFIHCWRAVEVLP  232 (536)
Q Consensus       169 ~~~~l~sgs------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~----------dg~i~vwd~~~~~~  232 (536)
                      ++++++...      .|+.|.+||..+++.+..+..+..+-.+++|++++++++..          +++|.+||..+.+ 
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-   92 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-   92 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-
Confidence            445555443      37899999999999888887766666778899999999863          6789999987653 


Q ss_pred             ceecccCcccccceEEeeC------CccCEEEEEE--eCCEEEEEec--CCeEEEEeCCCceEeEe-eeccccE-EEEee
Q 009373          233 HLFDISGSEKQNTQFRLWE------HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKV-LRHSDWV-YGLAP  300 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~------h~~~v~~l~~--~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~v-~~~~~  300 (536)
                                  ....+..      +......+++  ++++|+++..  +++|.+||+.+++.+.. +...... ..+.|
T Consensus        93 ------------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p  160 (361)
T 2oiz_A           93 ------------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP  160 (361)
T ss_dssp             ------------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred             ------------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence                        2222211      1233455677  7888888864  58999999999998887 6643321 22345


Q ss_pred             cC-CEEEEec-CCcEEEEeCCC-CcEEEEEc-----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce
Q 009373          301 HD-TTVASTS-GSDVYIWDTNS-GCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL  372 (536)
Q Consensus       301 ~~-~~l~~~~-d~~i~i~d~~~-~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~  372 (536)
                      ++ ..+++.+ ||.+.+++... ++......     .....+ ..+.+++++..++..+.++.|.++|+.....    ..
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~----~~  235 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEV----KV  235 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSC----EE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCc----ee
Confidence            44 4444444 89999998865 55442211     111112 2334467787777788899999999865421    11


Q ss_pred             eeecc--C----C----CCCeEEEEEcC--CeEEEEeC-----------CCcEEEEECCcccccCCCCCCCceeeEEeeC
Q 009373          373 VATWI--P----H----TGPVNSLAFEF--PWLVSAAG-----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  429 (536)
Q Consensus       373 ~~~~~--~----h----~~~v~~l~~~~--~~l~s~s~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  429 (536)
                      ...+.  .    +    ......++|++  +.++++..           .+.|.+||+.+.+..                
T Consensus       236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----------------  299 (361)
T 2oiz_A          236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----------------  299 (361)
T ss_dssp             EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----------------
T ss_pred             cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----------------
Confidence            11110  0    0    01112256765  56665543           347999999875322                


Q ss_pred             CCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCch--hhHHHHHHhhhcccchhHHHhhhhccccccCCC
Q 009373          430 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA--FEIERRARALRGIRLENRMRRRKLQTEMSSKGG  502 (536)
Q Consensus       430 ~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  502 (536)
                         ..+..+...-+.+++++++|++++. +.|.+||..++  +.+.+....          -..+..++++|+|+
T Consensus       300 ---~~i~~~~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~----------G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          300 ---ARIPGRDALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA----------AEASLQVQFHPVGG  360 (361)
T ss_dssp             ---EEEECTTCCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS----------CSSEEEEEECCCSC
T ss_pred             ---EEEecCCeeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC----------CCCcEEEEecCCCC
Confidence               1122222444566677788888886 99999999998  766443111          12245788999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=3.9e-14  Score=138.71  Aligned_cols=227  Identities=10%  Similarity=-0.020  Sum_probs=144.5

Q ss_pred             EEEEEEecCCCEEEEEeCC---CcEEEEECCCCceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          161 VLTVFVLASAKLLFTSGYD---SIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~d---g~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      +..++|+|+|++|+.+..+   ..|.+||+.+++.......+....  ..++|+++.|+.++.++.|++||+.++.... 
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~-  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV-  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE-
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE-
Confidence            7788999999998877543   468888998887654433332222  5678999999999999999999997764211 


Q ss_pred             cccCcccccceEEeeCCccCEEE---E----------------EE--eCCEEEEE-----ecCCeEEEEeCCCceEeEee
Q 009373          236 DISGSEKQNTQFRLWEHEGPITS---L----------------AL--DLTRIYSG-----SWDMTVRVWDRALLKCLKVL  289 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~---l----------------~~--~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~  289 (536)
                                  ....+......   +                .+  +++.++.+     ..+..|.+||+.+++.....
T Consensus       117 ------------~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~  184 (396)
T 3c5m_A          117 ------------IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH  184 (396)
T ss_dssp             ------------EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred             ------------EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence                        11111111111   1                11  33333322     35668999999988876666


Q ss_pred             eccccEEEEe--e-cCCEEEEec-C------CcEEEEeCCCCcEEEEEcccc-ccceEEEEEeCCCCEEEEEcCC-----
Q 009373          290 RHSDWVYGLA--P-HDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAH-VGNTKSLARSHTGDFLFTGGED-----  353 (536)
Q Consensus       290 ~~~~~v~~~~--~-~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~tg~~d-----  353 (536)
                      .+...+..+.  | ++..++..+ +      ..|.+||+..++... +.... ...+..+.|+|+|++|+.++.+     
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  263 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD  263 (396)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred             cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence            6666666554  6 677665544 2      368999987665333 32212 3368889999999987776543     


Q ss_pred             CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEe----------------CCCcEEEEECCcc
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAA----------------GDGKLSLIDVRKL  410 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s----------------~dg~i~vwd~~~~  410 (536)
                      +.|++||+.++..    ..+..+.+    .. +.|+|   .++++++                .++.|++||+.+.
T Consensus       264 ~~l~~~d~~~g~~----~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          264 RVIYKANPETLEN----EEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             EEEEEECTTTCCE----EEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred             ceEEEEECCCCCe----EEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence            4499999987632    12222222    22 67754   5666654                3478999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.54  E-value=5.2e-12  Score=120.13  Aligned_cols=255  Identities=9%  Similarity=0.004  Sum_probs=168.2

Q ss_pred             CCCcEEEEECCCCceeeeeC------CCCceEEEEecCCC-EEEEEeCCCcEEEEEcccCccceecccCcccccceEEee
Q 009373          178 YDSIVRMWHLEDGFSIASSK------PLGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  250 (536)
Q Consensus       178 ~dg~v~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  250 (536)
                      .+++|.++|.++++....+.      ........+..++. .+++...++.|.+||..+++             ....+.
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~-------------~~~~i~   81 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFK-------------EVGRIT   81 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCC-------------EEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccE-------------EEEEcC
Confidence            48999999999998766441      22233444544444 55555567999999998763             223332


Q ss_pred             CCccCEEEEEE-eCCEEEEEe-cCCeEEEEeCCCceEeEeeeccc------cEEEEe-ecCCEEEEec--CCcEEEEeCC
Q 009373          251 EHEGPITSLAL-DLTRIYSGS-WDMTVRVWDRALLKCLKVLRHSD------WVYGLA-PHDTTVASTS--GSDVYIWDTN  319 (536)
Q Consensus       251 ~h~~~v~~l~~-~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~------~v~~~~-~~~~~l~~~~--d~~i~i~d~~  319 (536)
                       .......+++ .++.++.+. .++.|.+||..+++....+....      ....+. .++.++++..  ++.|.++|+.
T Consensus        82 -~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           82 -GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             -CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETT
T ss_pred             -CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECC
Confidence             3456778888 445666666 89999999999999887776333      444454 4444445542  6889999999


Q ss_pred             CCcEEEEEccccccceEEEEEeCCCCEEEEEcCC----------CcEEEEEcccCccccccceeeeccCC-CCCeEEEEE
Q 009373          320 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED----------GAIHMYEIINDCTEANVLLVATWIPH-TGPVNSLAF  388 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~h-~~~v~~l~~  388 (536)
                      +++.+..+..  ......+.++|+|++++++..+          +.|.++|..+.      .....+... ......+++
T Consensus       161 t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~------~v~~~~~~~~g~~p~~la~  232 (328)
T 3dsm_A          161 TDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF------TVEKQFKFKLGDWPSEVQL  232 (328)
T ss_dssp             TTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT------EEEEEEECCTTCCCEEEEE
T ss_pred             CCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC------eEEEEEecCCCCCceeEEE
Confidence            9998887753  3456788999999977776654          78999999877      333333221 236789999


Q ss_pred             cC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec---CCEEEEe----cCCC
Q 009373          389 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIVCG----GEEG  459 (536)
Q Consensus       389 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sg----~~Dg  459 (536)
                      +|  ++|+++..  .|.+||..+.......                 .+.........+.++   +..+++.    ..++
T Consensus       233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~~-----------------~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~  293 (328)
T 3dsm_A          233 NGTRDTLYWINN--DIWRMPVEADRVPVRP-----------------FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG  293 (328)
T ss_dssp             CTTSCEEEEESS--SEEEEETTCSSCCSSC-----------------SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE
T ss_pred             ecCCCEEEEEcc--EEEEEECCCCceeeee-----------------eecCCCCceEEEEEcCCCCeEEEEcccccccCC
Confidence            86  67777654  8999999875321100                 001111223344443   3466666    6789


Q ss_pred             eEEEEeCCchhhHHH
Q 009373          460 IVRIWNFSQAFEIER  474 (536)
Q Consensus       460 ~i~vW~~~~~~~~~~  474 (536)
                      .|.+||.. ++.+.+
T Consensus       294 ~V~v~d~~-g~~~~~  307 (328)
T 3dsm_A          294 IVYRYSPQ-GKLIDE  307 (328)
T ss_dssp             EEEEECTT-CCEEEE
T ss_pred             EEEEECCC-CCEEEE
Confidence            99999998 665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=1.1e-10  Score=109.10  Aligned_cols=235  Identities=7%  Similarity=-0.012  Sum_probs=158.7

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ..+..+...+.+++++++|+++++...++.|.+||.. ++..... ......+..+  .+++.++++...++.|..|+..
T Consensus         8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A            8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            3455677889999999999988877778999999988 5543322 2233444444  4778877777778899999874


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-e-ccccEEEEe--ecC
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-R-HSDWVYGLA--PHD  302 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~--~~~  302 (536)
                       +..            ....+......+.++++  ++..+++...++.|..||. +++..... . ....+..+.  +++
T Consensus        87 -g~~------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g  152 (299)
T 2z2n_A           87 -GII------------KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN  152 (299)
T ss_dssp             -SCE------------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS
T ss_pred             -CcE------------EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC
Confidence             211            11112224457888888  3455666666889999998 55443322 1 334566665  677


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      .++++.. ++.|..||. +++............+..++++++|.+.++...++.|.+||. ++..     .......+..
T Consensus       153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~~~~~  225 (299)
T 2z2n_A          153 ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-----TEFKIPTPNA  225 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-----EEEECSSTTC
T ss_pred             CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-----EEEECCCCCC
Confidence            7877776 688999999 666554322234557889999999998777777889999998 5421     1122334567


Q ss_pred             CeEEEEEcC-CeEEEEe-CCCcEEEEECC
Q 009373          382 PVNSLAFEF-PWLVSAA-GDGKLSLIDVR  408 (536)
Q Consensus       382 ~v~~l~~~~-~~l~s~s-~dg~i~vwd~~  408 (536)
                      .+.++++++ ..|..+. .++.|.+||..
T Consensus       226 ~~~~i~~~~~g~l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          226 RPHAITAGAGIDLWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred             CceeEEECCCCCEEEeccCCceEEEECCC
Confidence            789999976 3455554 67899999973

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.53  E-value=5.3e-12  Score=121.68  Aligned_cols=235  Identities=12%  Similarity=0.036  Sum_probs=157.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeC----------CCcEEEEECCCCceeeeeCCC--------CceEEEEecCCCE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGY----------DSIVRMWHLEDGFSIASSKPL--------GCTIRAVAADKKL  212 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~----------dg~v~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~  212 (536)
                      +..+..+..+  .++|+|+++++++++.          +++|.+||+.+++.+..+...        ...-.+++|+|++
T Consensus        44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~  121 (361)
T 2oiz_A           44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF  121 (361)
T ss_dssp             EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred             EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence            4566666666  8999999999998863          678999999999888776422        2234678899999


Q ss_pred             EEEEeC--CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e-CCEEEEEecCCeEEEEeCCC-ceEe
Q 009373          213 LVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYSGSWDMTVRVWDRAL-LKCL  286 (536)
Q Consensus       213 l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s~s~dg~i~iwd~~~-~~~~  286 (536)
                      |+++..  +++|.+||+.++.             ....+..+.+. ..+.+  + +..+++.+.||.+.+|+... ++..
T Consensus       122 l~v~n~~~~~~v~v~d~~~~~-------------~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~  187 (361)
T 2oiz_A          122 IVLQNASPATSIGIVDVAKGD-------------YVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA  187 (361)
T ss_dssp             EEEEEESSSEEEEEEETTTTE-------------EEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred             EEEECCCCCCeEEEEECCCCc-------------EEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence            998874  5899999997753             22220111111 11223  2 35788899999999999865 5444


Q ss_pred             Ee------ee-ccccEE-EEeecCCEEEEec-CCcEEEEeCCCCcEE--EEEcc-c----c----ccceEEEEEeCCCCE
Q 009373          287 KV------LR-HSDWVY-GLAPHDTTVASTS-GSDVYIWDTNSGCLL--TVVNG-A----H----VGNTKSLARSHTGDF  346 (536)
Q Consensus       287 ~~------~~-~~~~v~-~~~~~~~~l~~~~-d~~i~i~d~~~~~~~--~~~~~-~----~----~~~i~~l~~~~~~~~  346 (536)
                      ..      +. ...++. ...+++..++..+ ++.+.++|+..+...  ..+.. .    +    ......++++|+++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~  267 (361)
T 2oiz_A          188 SQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR  267 (361)
T ss_dssp             EEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE
T ss_pred             eeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe
Confidence            11      11 111211 1135565555555 789999999765422  22110 0    0    111223789999887


Q ss_pred             EEEEcC-----------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          347 LFTGGE-----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       347 l~tg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ++++..           .+.|.+||+.+.      +.+.++..+.  +.+++|+|  ++|++++. +.|.+||..++
T Consensus       268 lyv~~~~~~~~~~~~~~~~~v~viD~~t~------~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          268 MYVFMHPDGKEGTHKFPAAEIWVMDTKTK------QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEEEESSCCTTCTTCCCSEEEEEETTTT------EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEEEccCCCcccccCCCceEEEEECCCC------cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            776543           347999999988      6677777666  89999986  68888876 99999999885

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=7.1e-12  Score=119.16  Aligned_cols=229  Identities=10%  Similarity=-0.043  Sum_probs=157.6

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      ....+.+. +++++++...++.|.+||..+++.+.++.... ..-.++++++..+++...++.|.+||..++..      
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~------  117 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI------  117 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE------
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE------
Confidence            45667674 45566666678999999999999988875332 23345557775444444899999999977631      


Q ss_pred             CcccccceEEeeCCc-----cCEEEEEEeCCEEEEEe--cCCeEEEEeCCCceEeEeeeccccEEE--EeecCCEEEEec
Q 009373          239 GSEKQNTQFRLWEHE-----GPITSLALDLTRIYSGS--WDMTVRVWDRALLKCLKVLRHSDWVYG--LAPHDTTVASTS  309 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~-----~~v~~l~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~  309 (536)
                             ...+....     .....++++++.++.+.  .++.|.++|..+++....+........  +.+++++++++.
T Consensus       118 -------~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          118 -------TGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             -------EEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBC
T ss_pred             -------EEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEEC
Confidence                   11121111     13445666777777766  489999999999998888773333333  447888777766


Q ss_pred             -C----------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccC
Q 009373          310 -G----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       310 -d----------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                       +          +.|.++|..+++....+..........++++|+++.|+++..  .|.+||..++...    ....+..
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~----~~~~~~~  264 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP----VRPFLEF  264 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC----SSCSBCC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee----eeeeecC
Confidence             3          689999999998877764322347899999999999888765  8999999877321    1111122


Q ss_pred             CCCCeEEEEEcC--CeEEEE-----eCCCcEEEEECC
Q 009373          379 HTGPVNSLAFEF--PWLVSA-----AGDGKLSLIDVR  408 (536)
Q Consensus       379 h~~~v~~l~~~~--~~l~s~-----s~dg~i~vwd~~  408 (536)
                      +.....+++++|  ..|+.+     ..++.|.+||..
T Consensus       265 ~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          265 RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            246788999986  444444     468899999987

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.52  E-value=8.3e-12  Score=119.76  Aligned_cols=253  Identities=9%  Similarity=0.059  Sum_probs=158.6

Q ss_pred             ccEEEEEEecCCCEEEEEe---------CCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCC---Cc--EEE
Q 009373          159 EAVLTVFVLASAKLLFTSG---------YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD---GF--IHC  224 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d---g~--i~v  224 (536)
                      ..+...++  +|+.++...         .++.|.+||+.+++... +  .......++|+|+.|+.++.+   +.  |.+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~   89 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I--ENATMPRISPDGKKIAFMRANEEKKVSEIWV   89 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E--ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c--ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence            34566667  787776542         36789999999886543 3  334456788999999887754   33  777


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC---------------------------CeE
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---------------------------MTV  275 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---------------------------g~i  275 (536)
                      |++.++.              ...+..+.. +..+.|  +++.|+.++.+                           ..|
T Consensus        90 ~~~~~g~--------------~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l  154 (347)
T 2gop_A           90 ADLETLS--------------SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF  154 (347)
T ss_dssp             EETTTTE--------------EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred             EECCCCc--------------eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence            7776542              122222333 888999  77888877643                           579


Q ss_pred             EEEeCCCceEeEeeeccccEEEE--eecCCEEEEec-C------C-cEEEEeCCCCcEEEEEccccccceEEEEEeCCCC
Q 009373          276 RVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-G------S-DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  345 (536)
Q Consensus       276 ~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d------~-~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~  345 (536)
                      .+||+.+++.+..+... .+..+  +|++ +++++. +      . ...+|.+.+++. ..+.. + ..+..+  +|+|+
T Consensus       155 ~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~-~-~~~~~~--spdg~  227 (347)
T 2gop_A          155 WIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFE-K-VSFYAV--DSDGE  227 (347)
T ss_dssp             EEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEE-E-ESEEEE--EECSS
T ss_pred             EEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEecc-C-cceeeE--CCCCC
Confidence            99999988774444332 44444  4788 666664 3      1 334444335543 33332 3 555554  99999


Q ss_pred             EEEEEcCC--------CcEEEEEcccCccccccceeeeccCCCCCeEE-EEEcCCeEEEEeCCCcEEEEECCcccccCCC
Q 009373          346 FLFTGGED--------GAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP  416 (536)
Q Consensus       346 ~l~tg~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  416 (536)
                      .|+.++.+        ..|.+||  ++      ........|...+.. +.|+..++++++.++.+++| +.++.     
T Consensus       228 ~l~~~~~~~~~~~~~~~~l~~~d--~~------~~~~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g~-----  293 (347)
T 2gop_A          228 RILLYGKPEKKYMSEHNKLYIYD--GK------EVMGILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDGE-----  293 (347)
T ss_dssp             CEEEEECCSSSCCCSSCEEEEEC--SS------CEEESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESSS-----
T ss_pred             EEEEEEccccCCccccceEEEEC--CC------ceEeccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCCc-----
Confidence            88877654        3577777  33      223333456677886 88873377888899999999 86321     


Q ss_pred             CCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeE-EEEeCC
Q 009373          417 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIV-RIWNFS  467 (536)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i-~vW~~~  467 (536)
                                    ... +..+...+.++++++..+++++.++.. .+|.++
T Consensus       294 --------------~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          294 --------------IKP-IAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             --------------EEE-EECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred             --------------eEE-EecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence                          011 122245566777666666677777765 778775

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=2.3e-11  Score=113.27  Aligned_cols=230  Identities=10%  Similarity=0.121  Sum_probs=148.7

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEec--CCeEEEEe
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW--DMTVRVWD  279 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--dg~i~iwd  279 (536)
                      .++.+++.++++...++.|.+||........+...+        ...++...+..++++  .+.++.+..  ++.|.+||
T Consensus        35 v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~--------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECG--------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBS--------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             EEECCCCCEEEEECCCCEEEEECCCCcEEEEecccC--------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            445688888888889999999997632110000000        001344678889982  345555553  89999999


Q ss_pred             CCCceEeEeee--ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCC
Q 009373          280 RALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       280 ~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                       .+++.+..+.  +...+.++.  ++++++++.. ++.|.+||.. ++.+..+.. ++...+..++++|+|+++++...+
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence             5677666664  334566665  7888887776 6889999964 555555532 344578999999999988888889


Q ss_pred             CcEEEEEcccCccccccceeeecc--CCCCCeEEEEEcC--CeEEEEeCCC-cEEEEECCcccccCCCCCCCceeeEEee
Q 009373          354 GAIHMYEIINDCTEANVLLVATWI--PHTGPVNSLAFEF--PWLVSAAGDG-KLSLIDVRKLLRSGRPTSGKRVSRVIEV  428 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~--~~l~s~s~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~  428 (536)
                      +.|++||....       .+..+.  ++...+.++++++  .++++...++ .|.+||....          .+..+.. 
T Consensus       185 ~~i~~~~~~g~-------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~----------~~~~~~~-  246 (286)
T 1q7f_A          185 HCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ----------LISALES-  246 (286)
T ss_dssp             TEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC----------EEEEEEE-
T ss_pred             CEEEEEcCCCC-------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC----------EEEEEcc-
Confidence            99999997433       233333  3346789999976  5666666665 9999996421          1111100 


Q ss_pred             CCCeeeeccccccE--EEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          429 EPPQRMLHGFECNL--LSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       429 ~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                             .......  .+++++++++++ +.|+.|++|++...
T Consensus       247 -------~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          247 -------KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -------SSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -------cCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence                   1111123  344455556666 56999999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=6.8e-13  Score=139.89  Aligned_cols=240  Identities=11%  Similarity=-0.083  Sum_probs=160.1

Q ss_pred             CccccEEEEEEecCCCEEE-----EEeCCCcEEEEECCCCcee-ee-eCCCCceEEEEecCCCEEEEEeCCCc-------
Q 009373          156 GHTEAVLTVFVLASAKLLF-----TSGYDSIVRMWHLEDGFSI-AS-SKPLGCTIRAVAADKKLLVAGGTDGF-------  221 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~-----sgs~dg~v~iwd~~~~~~~-~~-~~~~~~~v~~~~~~~~~l~sg~~dg~-------  221 (536)
                      +|...+.+++|||||++||     .|+.+.+|++||+.+++.+ .. +......-.+++|||+.|+.++.|..       
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            5677899999999999998     4455678999999999865 22 22222245678899999999998876       


Q ss_pred             ------EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC----eEEEEeCCCceEeEee
Q 009373          222 ------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM----TVRVWDRALLKCLKVL  289 (536)
Q Consensus       222 ------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg----~i~iwd~~~~~~~~~~  289 (536)
                            |++|++.++..         ....+.....|...+.++.|  ++++|+.++.++    .|.+||..+++.....
T Consensus       198 ~~~~~~v~~~~l~t~~~---------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~  268 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPS---------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV  268 (695)
T ss_dssp             GGGGCEEEEEETTSCGG---------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE
T ss_pred             CCCCCEEEEEECCCCch---------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee
Confidence                  99999977631         01122233345567888888  778888777666    6777777666544444


Q ss_pred             eccccEEE-EeecCCEEEEec----CCcEEEEeCCCCcE--EEEEcccc-ccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          290 RHSDWVYG-LAPHDTTVASTS----GSDVYIWDTNSGCL--LTVVNGAH-VGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       290 ~~~~~v~~-~~~~~~~l~~~~----d~~i~i~d~~~~~~--~~~~~~~~-~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                      .+...+.. +.+++.+++.+.    ++.|.+||+.++..  ...+...+ ...+..++++ ++.++++...|+..++|.+
T Consensus       269 ~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          269 KGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             ECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             cCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            44433333 336777444443    36799999988753  23332223 4567888888 6778888999999888877


Q ss_pred             ccCccccccceeeeccCC-CCCeEEEEEcC--CeEE-EEeC---CCcEEEEECCcc
Q 009373          362 INDCTEANVLLVATWIPH-TGPVNSLAFEF--PWLV-SAAG---DGKLSLIDVRKL  410 (536)
Q Consensus       362 ~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~--~~l~-s~s~---dg~i~vwd~~~~  410 (536)
                      ....     .....+..+ .+.|..+++++  +.++ +.+.   .++|++||+.++
T Consensus       348 ~~~g-----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          348 TLKG-----KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             ETTC-----CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             eCCC-----CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            6321     223334444 56677777765  3444 3322   478999998764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.50  E-value=8.4e-12  Score=131.92  Aligned_cols=241  Identities=9%  Similarity=-0.067  Sum_probs=162.2

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCC-----cEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEEEeCCCc--------
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDS-----IVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDGF--------  221 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg-----~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg~--------  221 (536)
                      +|...+..++|+|||++||.++.++     .|++||+.+++.+.... .....-.+++|||+.|+.++.++.        
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~  201 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence            4556789999999999998776543     89999999998765322 222234678899999999988766        


Q ss_pred             --------EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-----CCeEEEEeCCC----
Q 009373          222 --------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-----DMTVRVWDRAL----  282 (536)
Q Consensus       222 --------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----dg~i~iwd~~~----  282 (536)
                              |++|++.++...         ...+.....|...+..+.|  ++++|+.++.     +..|.+||+.+    
T Consensus       202 ~~~~~~~~v~~~~l~t~~~~---------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          202 TSTNLHQKLYYHVLGTDQSE---------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CCCCCCCEEEEEETTSCGGG---------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred             cccCCCCEEEEEECCCCccc---------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc
Confidence                    999998765310         0112222235556778888  7788887765     67899999976    


Q ss_pred             --ce-EeEeee-ccccE-EEEeecCCEEEEec--C---CcEEEEeCCCCc--EEEEEccccc-cceEEEEEeCCCCEEEE
Q 009373          283 --LK-CLKVLR-HSDWV-YGLAPHDTTVASTS--G---SDVYIWDTNSGC--LLTVVNGAHV-GNTKSLARSHTGDFLFT  349 (536)
Q Consensus       283 --~~-~~~~~~-~~~~v-~~~~~~~~~l~~~~--d---~~i~i~d~~~~~--~~~~~~~~~~-~~i~~l~~~~~~~~l~t  349 (536)
                        +. ....+. +...+ ..+.+++..|+..+  +   ..|.+||+.++.  ....+...+. ..+..+.|++++.++++
T Consensus       273 ~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          273 ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             SCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             cCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence              42 233333 33333 34568888766554  2   359999998874  2233432223 36888999988888888


Q ss_pred             EcCCCc--EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEE-EEeC---CCcEEEEECCccc
Q 009373          350 GGEDGA--IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV-SAAG---DGKLSLIDVRKLL  411 (536)
Q Consensus       350 g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s~---dg~i~vwd~~~~~  411 (536)
                      ...|+.  |.+||+.++      ..+..+..+.+.|..+.+++  +.++ +.+.   .+.|++||+.++.
T Consensus       353 ~~~~g~~~l~~~~~~~g------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          353 YLHDVKNTLQLHDLATG------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEETTEEEEEEEETTTC------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCEEEEEEEECCCC------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            888886  455565455      34455666777888898875  3444 3333   4789999997754

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=1.7e-11  Score=114.79  Aligned_cols=235  Identities=11%  Similarity=0.013  Sum_probs=158.0

Q ss_pred             ceeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd  226 (536)
                      .+..+..+.....+++|+|+++ +++++..++.|..|+..++  ...+..+...+  .++.++++++++...++.|.+||
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            4567777778889999999998 8888889999999999887  44444444444  44558888887777789999999


Q ss_pred             cccCccceecccCcccccceEEeeC-CccCEEEEEE--eCCEEEE----Ee-------------cCCeEEEEeCCCceEe
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYS----GS-------------WDMTVRVWDRALLKCL  286 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s----~s-------------~dg~i~iwd~~~~~~~  286 (536)
                      ..++....+.          ....+ ....+.++++  +++.+++    |+             ..+.|..++.. ++..
T Consensus        97 ~~~g~~~~~~----------~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~  165 (296)
T 3e5z_A           97 EPGGEWESIA----------DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS  165 (296)
T ss_dssp             STTCCEEEEE----------CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE
T ss_pred             CCCCcEEEEe----------eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE
Confidence            8666421110          00001 1224556777  5566666    33             13466666665 4443


Q ss_pred             EeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCC-CCcE---EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          287 KVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTN-SGCL---LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       287 ~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~-~~~~---~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      ....+......++  ++++.+++.. ++.|.+||+. +++.   ...+ ..+...+..++++++|++.++.  ++.|.+|
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            3333444455555  8898886666 6899999987 5554   3344 3455667889999999876666  7889999


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEc-C--CeEEEEeCCCcEEEEECCc
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFE-F--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      |.. +      ..+..+..+.. +++++|. +  +.|++++.++ +.-++.++
T Consensus       243 ~~~-g------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          243 TPD-G------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             CTT-S------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             CCC-C------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            976 4      34555566666 8999994 4  5788888764 44455544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.48  E-value=7.8e-12  Score=119.98  Aligned_cols=220  Identities=11%  Similarity=0.005  Sum_probs=145.6

Q ss_pred             ccEEEEEEecCCCEEEEEeCC---C--cEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCC--------------
Q 009373          159 EAVLTVFVLASAKLLFTSGYD---S--IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTD--------------  219 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~d---g--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~d--------------  219 (536)
                      ..+..++|+|||+.|+.++.+   +  .|.+|++.+++.............+++|+++.|+.++.+              
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~  138 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP  138 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence            567889999999999887754   3  388889888876544433223344567999988887643              


Q ss_pred             -------------CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC-------eEEE
Q 009373          220 -------------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-------TVRV  277 (536)
Q Consensus       220 -------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------~i~i  277 (536)
                                   ..|.+||+.++.             ....+.. . .+..+.|  ++ .+++++.++       ...+
T Consensus       139 ~~~~g~~~~~~~~~~l~~~d~~~~~-------------~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l  202 (347)
T 2gop_A          139 AWFDDLGFFDGEKTTFWIFDTESEE-------------VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDI  202 (347)
T ss_dssp             CC---------CEEEEEEEETTTTE-------------EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEE
T ss_pred             eeecCcccccCccceEEEEECCCCe-------------EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccE
Confidence                         568888886653             1122222 2 5677788  45 666665542       3344


Q ss_pred             EeCCCceEeEeeeccccEEEEeecCCEEEEec-C--------CcEEEEeCCCCcEEEEEccccccceEE-EEEeCCCCEE
Q 009373          278 WDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKS-LARSHTGDFL  347 (536)
Q Consensus       278 wd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~l  347 (536)
                      |.+.+++......+ ..+..++|+|+.++..+ +        ..|.+||  +++. ..+..++...+.. +.|+ ++ ++
T Consensus       203 ~~~d~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~  276 (347)
T 2gop_A          203 YIWEDGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY  276 (347)
T ss_dssp             EEEETTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred             EEeCCCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence            44435554433335 56666689998877655 3        3588888  5554 3343456777886 8999 88 89


Q ss_pred             EEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcE-EEEECC
Q 009373          348 FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKL-SLIDVR  408 (536)
Q Consensus       348 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i-~vwd~~  408 (536)
                      ++++.++.+++| +.++      .. ..+..+...|.+++|++.++++++.++.. .+|.+.
T Consensus       277 ~~~~~~~~~~l~-~~~g------~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          277 FTLFEEGSVNLY-IWDG------EI-KPIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEETTEEEEE-EESS------SE-EEEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred             EEEecCCcEEEE-EcCC------ce-EEEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence            999999999999 8743      22 23334577899999988656677777654 677654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=9.1e-11  Score=111.59  Aligned_cols=230  Identities=13%  Similarity=0.032  Sum_probs=154.1

Q ss_pred             EEEEecCCCEEEEEeCC------------------------CcEEEEEcccCccceecccCcccccceEEee-CCccCEE
Q 009373          203 IRAVAADKKLLVAGGTD------------------------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPIT  257 (536)
Q Consensus       203 v~~~~~~~~~l~sg~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~  257 (536)
                      -+++.++|+++++...+                        ++|.+||..++..             ...+. ++.....
T Consensus        28 ~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-------------~~~~~~~~~~~p~   94 (329)
T 3fvz_A           28 GVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-------------LQSSGKNLFYLPH   94 (329)
T ss_dssp             EEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-------------EEEECTTTCSSEE
T ss_pred             EEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-------------EeccCCCccCCce
Confidence            34555778877777766                        5789999876531             11221 3445788


Q ss_pred             EEEE--eCCEEEEEecCCeEEEEeCCCce-EeEeee----------ccccEEEEe--e-cCCEEEEec--CCcEEEEeCC
Q 009373          258 SLAL--DLTRIYSGSWDMTVRVWDRALLK-CLKVLR----------HSDWVYGLA--P-HDTTVASTS--GSDVYIWDTN  319 (536)
Q Consensus       258 ~l~~--~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~----------~~~~v~~~~--~-~~~~l~~~~--d~~i~i~d~~  319 (536)
                      .+++  +++.+++.+.++.|++||..... .+..+.          +......++  + ++.++++.+  ++.|++|| .
T Consensus        95 gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~  173 (329)
T 3fvz_A           95 GLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-P  173 (329)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-T
T ss_pred             EEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-C
Confidence            8999  56777888888999999986542 344442          122455665  6 788888874  78999999 5


Q ss_pred             CCcEEEEEcc---------ccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeec--cCCCCCeEEEE
Q 009373          320 SGCLLTVVNG---------AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATW--IPHTGPVNSLA  387 (536)
Q Consensus       320 ~~~~~~~~~~---------~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~  387 (536)
                      +++.+..+..         ++...+..++++|+ +.++++...++.|++||..++      ..+..+  ..+...+.+++
T Consensus       174 ~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G------~~~~~~~~~~~~~~~~~~~  247 (329)
T 3fvz_A          174 SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK------EFVREIKHASFGRNVFAIS  247 (329)
T ss_dssp             TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC------CEEEEECCTTTTTCEEEEE
T ss_pred             CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC------cEEEEEeccccCCCcceee
Confidence            6777776631         12334899999998 778888888999999999866      344444  35667888999


Q ss_pred             EcCCeEEEEeC--------CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--CCEEEEecC
Q 009373          388 FEFPWLVSAAG--------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGE  457 (536)
Q Consensus       388 ~~~~~l~s~s~--------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~  457 (536)
                      |+|..++....        +..|++||+.++......            ..    ..++......++++  +..+++...
T Consensus       248 ~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~------------~~----~~~~~~~p~~ia~~~dG~lyvad~~  311 (329)
T 3fvz_A          248 YIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF------------KP----VRKHFDMPHDIVASEDGTVYIGDAH  311 (329)
T ss_dssp             EETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE------------CC----SSSCCSSEEEEEECTTSEEEEEESS
T ss_pred             ecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE------------cC----CCCccCCeeEEEECCCCCEEEEECC
Confidence            98865555432        347999998764322110            00    01223334455554  458888999


Q ss_pred             CCeEEEEeCCc
Q 009373          458 EGIVRIWNFSQ  468 (536)
Q Consensus       458 Dg~i~vW~~~~  468 (536)
                      ++.|++|++..
T Consensus       312 ~~~I~~~~~~~  322 (329)
T 3fvz_A          312 TNTVWKFTLTE  322 (329)
T ss_dssp             SCCEEEEEEEE
T ss_pred             CCEEEEEeCCc
Confidence            99999999865

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.47  E-value=8.6e-11  Score=111.96  Aligned_cols=232  Identities=9%  Similarity=-0.027  Sum_probs=151.2

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCC----CcEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTD----GFIH  223 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~d----g~i~  223 (536)
                      ....+.++...+.+++|+|++++++++..++.|.+||.++++.......+...+.++  .++++++++...+    +.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            355677788888999999999988889999999999999887655443344445444  5788877777666    6899


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec------CCeEEEEeCCCceEeEeeeccccE
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDWV  295 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~v  295 (536)
                      +||..++....           ......+...+.++++  ++..+++...      .+.|..+|..+++..........+
T Consensus       116 ~~d~~~~~~~~-----------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  184 (333)
T 2dg1_A          116 AATENGDNLQD-----------IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA  184 (333)
T ss_dssp             EECTTSCSCEE-----------EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE
T ss_pred             EEeCCCCEEEE-----------EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcc
Confidence            99987653210           0000123457888998  4555555443      356777776665544433333345


Q ss_pred             EEEe--ecCCEEEE-ec-CCcEEEEeCCC-CcEEEEE-----c--cccccceEEEEEeCCCCEEEEEcCCCcEEEEEccc
Q 009373          296 YGLA--PHDTTVAS-TS-GSDVYIWDTNS-GCLLTVV-----N--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  363 (536)
Q Consensus       296 ~~~~--~~~~~l~~-~~-d~~i~i~d~~~-~~~~~~~-----~--~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~  363 (536)
                      ..+.  ++++.++. .. ++.|.+||+.+ +..+..+     .  .++ ..+..++++++|.++++...++.|.+||.. 
T Consensus       185 ~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-  262 (333)
T 2dg1_A          185 NGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-  262 (333)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-
Confidence            5554  78875544 44 68999999964 3322211     0  111 467889999999988888788999999974 


Q ss_pred             CccccccceeeeccCC------CCCeEEEEEcC--CeEEEEeCCC
Q 009373          364 DCTEANVLLVATWIPH------TGPVNSLAFEF--PWLVSAAGDG  400 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h------~~~v~~l~~~~--~~l~s~s~dg  400 (536)
                      +      ..+..+..+      ...+.+++|++  ..|+.++.++
T Consensus       263 g------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          263 G------YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             S------CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             C------CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            3      223333222      23688999975  4676666553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.47  E-value=4.4e-11  Score=116.15  Aligned_cols=265  Identities=8%  Similarity=0.027  Sum_probs=173.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCC----------CceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccC
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL----------GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      +..++.++.++.|..+|.++|+.+......          .........++..+++++.++.|..+|..+++..      
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~------  126 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVA------  126 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEE------
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEE------
Confidence            667888888999999999999988766442          1222334456788899999999999999887521      


Q ss_pred             cccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEE------EEeecCCEEEEec-CCc
Q 009373          240 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVY------GLAPHDTTVASTS-GSD  312 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~------~~~~~~~~l~~~~-d~~  312 (536)
                             ................++.++.++.++.|..+|..+++.+........+.      .....+..++.+. ++.
T Consensus       127 -------W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~  199 (376)
T 3q7m_A          127 -------WQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGR  199 (376)
T ss_dssp             -------EEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTE
T ss_pred             -------EEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCE
Confidence                   11111111111223457788899999999999999999988877433332      1122344555555 889


Q ss_pred             EEEEeCCCCcEEEEEccccccc---eEE---EEEeC--CCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          313 VYIWDTNSGCLLTVVNGAHVGN---TKS---LARSH--TGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       313 i~i~d~~~~~~~~~~~~~~~~~---i~~---l~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      +..+|..+++.+..........   +..   +...|  .+..+++++.+|.+..+|..++.      .+....  .....
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~------~~w~~~--~~~~~  271 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ------IMWKRE--LGSVN  271 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCC------EEEEEC--CCCEE
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCc------EEeecc--CCCCC
Confidence            9999999999887764221100   000   10111  25678888889999999998883      332222  23455


Q ss_pred             EEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEE
Q 009373          385 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIW  464 (536)
Q Consensus       385 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW  464 (536)
                      .+......++.++.++.|..+|..++...+.....                .  ..........+..|+.++.+|.|.++
T Consensus       272 ~~~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~----------------~--~~~~~~~~~~~~~l~v~~~~g~l~~~  333 (376)
T 3q7m_A          272 DFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDL----------------L--HRLLTSPVLYNGNLVVGDSEGYLHWI  333 (376)
T ss_dssp             EEEEETTEEEEEETTCCEEEEETTTCCEEEEECTT----------------T--TSCCCCCEEETTEEEEECTTSEEEEE
T ss_pred             CceEECCEEEEEcCCCeEEEEECCCCcEEEeeccc----------------C--CCcccCCEEECCEEEEEeCCCeEEEE
Confidence            66777889999999999999999886544321100                0  00111122346788899999999999


Q ss_pred             eCCchhhHH
Q 009373          465 NFSQAFEIE  473 (536)
Q Consensus       465 ~~~~~~~~~  473 (536)
                      |..+++.+.
T Consensus       334 d~~tG~~~~  342 (376)
T 3q7m_A          334 NVEDGRFVA  342 (376)
T ss_dssp             ETTTCCEEE
T ss_pred             ECCCCcEEE
Confidence            999987654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.47  E-value=2.3e-11  Score=115.92  Aligned_cols=231  Identities=11%  Similarity=0.070  Sum_probs=153.0

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE--EEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI--RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      ..|.++.|++++..++..+.++.++.|   .++....+..+....  .++.+++++++++..++.|.+||..++.     
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-----   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-----   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----
Confidence            446778899988878777888999999   345555554443333  3455888888888899999999987653     


Q ss_pred             ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC----CeEEEEeCCCceEeEeee---ccccEEEEe--ecCCEE
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD----MTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~---~~~~v~~~~--~~~~~l  305 (536)
                              .......+...+.++++  +++.+++...+    +.|.+||..+++....+.   ....+.++.  ++++++
T Consensus        78 --------~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~  149 (333)
T 2dg1_A           78 --------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFY  149 (333)
T ss_dssp             --------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEE
T ss_pred             --------EEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEE
Confidence                    11112245678999999  45566665555    689999998876543332   334566665  788888


Q ss_pred             EEecC-------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEE-EEEcCCCcEEEEEcccC-cccccc--ceee
Q 009373          306 ASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIIND-CTEANV--LLVA  374 (536)
Q Consensus       306 ~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~tg~~dg~i~iwd~~~~-~~~~~~--~~~~  374 (536)
                      ++...       +.|..+|..+++.....  .....+..++|+|+++.| ++.+.++.|.+||+... ......  ....
T Consensus       150 v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~  227 (333)
T 2dg1_A          150 FTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY  227 (333)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             EEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence            87663       45777777665544332  234567899999999855 45566889999998642 111000  0111


Q ss_pred             eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          375 TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      .+.++ ..+..+++++  .++++...++.|.+||..
T Consensus       228 ~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          228 YFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             ECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            22223 4678899975  556666678899999974

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.47  E-value=8.3e-12  Score=131.04  Aligned_cols=244  Identities=10%  Similarity=0.012  Sum_probs=157.9

Q ss_pred             eeeeeCccccEE---------EEEEe--cCCCE-EEEEeC-CCcEEEEECC--C-CceeeeeCC-----CCceE--EEEe
Q 009373          151 IDVLYGHTEAVL---------TVFVL--ASAKL-LFTSGY-DSIVRMWHLE--D-GFSIASSKP-----LGCTI--RAVA  207 (536)
Q Consensus       151 ~~~l~~h~~~V~---------~v~~~--~~~~~-l~sgs~-dg~v~iwd~~--~-~~~~~~~~~-----~~~~v--~~~~  207 (536)
                      .+.+.+|...|.         ...|+  |||+. |+.++. +..|.++++.  + + ....+..     +...+  .+++
T Consensus        60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~s  138 (662)
T 3azo_A           60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLL  138 (662)
T ss_dssp             EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEE
T ss_pred             cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccCCccCCCCccccCcEEC
Confidence            556667766666         66666  99998 776554 5667777765  2 3 3444444     44444  4667


Q ss_pred             cCCCEEEEEeCC----------CcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE--eCCEEEEEecCC-
Q 009373          208 ADKKLLVAGGTD----------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDM-  273 (536)
Q Consensus       208 ~~~~~l~sg~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg-  273 (536)
                      |||+.|++++.+          ..|++||+.++..        ........+. .+...+..++|  |+++|+.++.++ 
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~  210 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA--------ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP  210 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT--------TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc--------ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence            999999998877          5899999876100        0000222344 45566777788  788898887653 


Q ss_pred             -------eEEEEeCC-Cc---eEeEeee-ccccEEEEe--ecCCEEEEec-CC--cEEEEeCCCCcEEEEEccccccc--
Q 009373          274 -------TVRVWDRA-LL---KCLKVLR-HSDWVYGLA--PHDTTVASTS-GS--DVYIWDTNSGCLLTVVNGAHVGN--  334 (536)
Q Consensus       274 -------~i~iwd~~-~~---~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~--  334 (536)
                             .|.+||+. ++   +...... +...+..+.  |+|++++++. ++  .|.+||+.+++..... ..+...  
T Consensus       211 ~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~  289 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLC-RREEEFAG  289 (662)
T ss_dssp             CCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESS-CCSSBSSC
T ss_pred             CCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecc-cccccccC
Confidence                   79999998 56   4433333 356677665  8899777776 56  6777887777654433 222222  


Q ss_pred             ------eEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEE-EEcCCe--EEEEeCCC--cEE
Q 009373          335 ------TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL-AFEFPW--LVSAAGDG--KLS  403 (536)
Q Consensus       335 ------i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~--l~s~s~dg--~i~  403 (536)
                            +..++|+|++.++++++. +.++||.+....     ..+..+..|...+..+ +++++.  +++++.+.  .|.
T Consensus       290 p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~-----~~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          290 PLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES-----GELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             CCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT-----TEEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             ccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC-----CcEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence                  567889999999999999 999999554321     1245667778888888 787753  33344454  455


Q ss_pred             EEECCcc
Q 009373          404 LIDVRKL  410 (536)
Q Consensus       404 vwd~~~~  410 (536)
                      +||+.++
T Consensus       364 ~~d~~~g  370 (662)
T 3azo_A          364 ELDTVTG  370 (662)
T ss_dssp             EEETTTC
T ss_pred             EEECCCC
Confidence            5565553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.46  E-value=4.1e-12  Score=124.20  Aligned_cols=280  Identities=9%  Similarity=-0.012  Sum_probs=168.2

Q ss_pred             EEEECCCCceeeeeCCCCce-------EEEEecCCCEEEEEeCC---CcEEEEEcccCccceecccCcccccceEEeeCC
Q 009373          183 RMWHLEDGFSIASSKPLGCT-------IRAVAADKKLLVAGGTD---GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  252 (536)
Q Consensus       183 ~iwd~~~~~~~~~~~~~~~~-------v~~~~~~~~~l~sg~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  252 (536)
                      ...|..++..+..+..+...       -.+++|+|+.|+.....   ..|.+||+.++.              ...+..+
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~--------------~~~l~~~   78 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ--------------AVQLTEG   78 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE--------------EEECCCS
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCc--------------EEEeecC
Confidence            34577777777766554322       23567999988776543   468888886653              1122222


Q ss_pred             ccC-EEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEE---------------------EeecCCEEEE
Q 009373          253 EGP-ITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYG---------------------LAPHDTTVAS  307 (536)
Q Consensus       253 ~~~-v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~---------------------~~~~~~~l~~  307 (536)
                      ... ...+.|  +++.|+.++.++.|.+||+.+++...... +......                     ++|+++.++.
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~  158 (396)
T 3c5m_A           79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKF  158 (396)
T ss_dssp             SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHH
T ss_pred             CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceee
Confidence            222 222455  78899999999999999999887665554 2222111                     1244444433


Q ss_pred             e------cCCcEEEEeCCCCcEEEEEccccccceEEEEEeC-CCCEEEEEcCC------CcEEEEEcccCccccccceee
Q 009373          308 T------SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH-TGDFLFTGGED------GAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       308 ~------~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~  374 (536)
                      .      .+..|.+||+.+++.....  .+...+..+.|+| ++..|+..+.+      ..|.+||+....       ..
T Consensus       159 ~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-------~~  229 (396)
T 3c5m_A          159 AEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-------VR  229 (396)
T ss_dssp             HHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-------CE
T ss_pred             eeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-------ee
Confidence            2      2467999999998766554  3667789999999 78877766543      358888876542       12


Q ss_pred             eccCC--CCCeEEEEEcC--CeEEEEeCC-----CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE
Q 009373          375 TWIPH--TGPVNSLAFEF--PWLVSAAGD-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  445 (536)
Q Consensus       375 ~~~~h--~~~v~~l~~~~--~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  445 (536)
                      .+..+  ...+..++|+|  ++|+.++.+     +.|++||+.++...          .+..       ..++.   ..+
T Consensus       230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~----------~l~~-------~~~~~---~~~  289 (396)
T 3c5m_A          230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE----------EVMV-------MPPCS---HLM  289 (396)
T ss_dssp             ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE----------EEEE-------CCSEE---EEE
T ss_pred             EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE----------Eeee-------CCCCC---CCc
Confidence            22222  23578889986  566666543     44999998764211          0000       11111   456


Q ss_pred             Ee-cCCEEEEec----------------CCCeEEEEeCCchhhHHHHHHhhhcccch-----hHHHhhhhccccccCCCC
Q 009373          446 DI-GADRIVCGG----------------EEGIVRIWNFSQAFEIERRARALRGIRLE-----NRMRRRKLQTEMSSKGGR  503 (536)
Q Consensus       446 ~~-~~~~l~sg~----------------~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~  503 (536)
                      ++ +++++++++                .++.|++||+.++... .    +......     ...........|+|+|+.
T Consensus       290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~----l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  364 (396)
T 3c5m_A          290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-K----LCKHSTSWDVLDGDRQITHPHPSFTPNDDG  364 (396)
T ss_dssp             ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-E----EEECCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred             cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-E----ccCCCCccccccccccCCCCCceEccCCCe
Confidence            66 777777654                3578999999876531 1    1110000     000011345789999999


Q ss_pred             cceeEee
Q 009373          504 TDQCSVA  510 (536)
Q Consensus       504 ~~~~~~~  510 (536)
                      ++.++..
T Consensus       365 l~~~s~~  371 (396)
T 3c5m_A          365 VLFTSDF  371 (396)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            9877653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.46  E-value=6.1e-12  Score=133.59  Aligned_cols=244  Identities=9%  Similarity=-0.010  Sum_probs=146.9

Q ss_pred             ccccCCccceeeeeCcccc-----EEEEEEecCCCEEEEEeCC---------CcEEEEECCCCceeeeeCCCCc--eEEE
Q 009373          142 SKTFLGRYSIDVLYGHTEA-----VLTVFVLASAKLLFTSGYD---------SIVRMWHLEDGFSIASSKPLGC--TIRA  205 (536)
Q Consensus       142 ~~~~~~~~~~~~l~~h~~~-----V~~v~~~~~~~~l~sgs~d---------g~v~iwd~~~~~~~~~~~~~~~--~v~~  205 (536)
                      .+...+......+.+|...     ...++|||||++|+.++.+         +.+.+||+.+++... +..+..  ...+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~  118 (740)
T 4a5s_A           40 VFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERIPNNTQWVT  118 (740)
T ss_dssp             EEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCCCTTEEEEE
T ss_pred             EEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccCCCcceeeE
Confidence            3333344445667777643     2347889999999998876         566799999987553 444444  3456


Q ss_pred             EecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCcc---------CEEEEEE--eCCEEEEEecCC-
Q 009373          206 VAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG---------PITSLAL--DLTRIYSGSWDM-  273 (536)
Q Consensus       206 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~--~~~~l~s~s~dg-  273 (536)
                      ++|||+.|+.+ .++.|++|++.++........+.    ....+.++.+         ....+.|  ||+.|+.++.|. 
T Consensus       119 ~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~----~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~  193 (740)
T 4a5s_A          119 WSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK----EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDT  193 (740)
T ss_dssp             ECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB----TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred             ECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC----ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEccc
Confidence            77999999888 46899999998765322111111    0011222221         1223666  777777765322 


Q ss_pred             -----------------------------------eEEEEeCCC---c---eEeEeee------ccccEEEEe--ecCCE
Q 009373          274 -----------------------------------TVRVWDRAL---L---KCLKVLR------HSDWVYGLA--PHDTT  304 (536)
Q Consensus       274 -----------------------------------~i~iwd~~~---~---~~~~~~~------~~~~v~~~~--~~~~~  304 (536)
                                                         +|++||+.+   +   +......      +...+..++  |+++.
T Consensus       194 ~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~  273 (740)
T 4a5s_A          194 EVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI  273 (740)
T ss_dssp             TCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE
T ss_pred             CCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeE
Confidence                                               588899988   7   3332221      445566655  89986


Q ss_pred             EEEec--C---CcEEEEeCCCCc----E---EEEEccccccceE-----EEEEeCCCCEEE-EEc-CCC--cEEEEEccc
Q 009373          305 VASTS--G---SDVYIWDTNSGC----L---LTVVNGAHVGNTK-----SLARSHTGDFLF-TGG-EDG--AIHMYEIIN  363 (536)
Q Consensus       305 l~~~~--d---~~i~i~d~~~~~----~---~~~~~~~~~~~i~-----~l~~~~~~~~l~-tg~-~dg--~i~iwd~~~  363 (536)
                      ++...  +   ..|.+||+.+++    +   ...+..+|...+.     ...|+|||+.|+ ..+ .+|  .|++||+.+
T Consensus       274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence            66543  1   369999999887    1   1111123554443     788999999776 554 444  477778766


Q ss_pred             CccccccceeeeccCCCCCeEEEE-EcCCeEEEEeC
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLA-FEFPWLVSAAG  398 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~-~~~~~l~s~s~  398 (536)
                      +      .. ..+......|..+. ++++.|+..+.
T Consensus       354 ~------~~-~~lT~g~~~v~~~~~~d~~~i~f~~~  382 (740)
T 4a5s_A          354 K------DC-TFITKGTWEVIGIEALTSDYLYYISN  382 (740)
T ss_dssp             S------SC-EESCCSSSCEEEEEEECSSEEEEEES
T ss_pred             C------ce-EecccCCEEEEEEEEEeCCEEEEEEe
Confidence            5      22 23333444555543 66665554444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.44  E-value=2.9e-11  Score=111.52  Aligned_cols=176  Identities=13%  Similarity=0.028  Sum_probs=134.7

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCCC---ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccc
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT  245 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  245 (536)
                      .+++|++++.|+.|.+||.++|+.+.++..+.   ..-..+.|+|++++  +.++.|..||. +++             .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-------------~   67 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-------------E   67 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-------------E
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-------------E
Confidence            36889999999999999999999999987654   34456679999888  45778999997 543             3


Q ss_pred             eEEeeCC-ccCEEEEEE--eCCEEEEEec-CCeEEEEeCCCceEeEeeecc-------ccE--EEEeecCCEEEEec-CC
Q 009373          246 QFRLWEH-EGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLRHS-------DWV--YGLAPHDTTVASTS-GS  311 (536)
Q Consensus       246 ~~~~~~h-~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~-------~~v--~~~~~~~~~l~~~~-d~  311 (536)
                      +..+..+ ...+.++.+  +++.+++.+. ++.|..+|. +++.+..+...       ...  .++.++++++++.. ++
T Consensus        68 ~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~  146 (276)
T 3no2_A           68 LWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS  146 (276)
T ss_dssp             EEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred             EEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence            3334333 245667777  8888888887 788888886 67777666511       112  23458899999888 79


Q ss_pred             cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       312 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .|..||.. |+.+..+..  ...+.++...++|+++++++.++.|..+|..++
T Consensus       147 ~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          147 EVREIAPN-GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             EEEEECTT-SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred             EEEEECCC-CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence            99999998 999988853  345667888999999999988889999999877

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.44  E-value=4.9e-11  Score=109.89  Aligned_cols=229  Identities=10%  Similarity=-0.062  Sum_probs=152.0

Q ss_pred             cEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceeeeeCCC--CceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          160 AVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      ...++++++++++++ +.+.++.|.+|+..++.........  ...-.++.++++++++.. ++.|.+||..+...    
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~----   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ----   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC----
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE----
Confidence            678999999999777 5477899999998665433221222  223355667888666555 88999999765421    


Q ss_pred             ccCcccccceEEee-CCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-
Q 009373          237 ISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-  309 (536)
Q Consensus       237 ~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-  309 (536)
                                ..+. .....+..+++  ++..+++...++.|.+|+..+........ ....+.++.  ++++++++.. 
T Consensus       100 ----------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          100 ----------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             ----------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             ----------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC
Confidence                      1111 22356788888  45666666678899999876554332221 222344444  7788777766 


Q ss_pred             CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc
Q 009373          310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE  389 (536)
Q Consensus       310 d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  389 (536)
                      ++.|.+||........... .+...+.+++++++|.++++...++.|.+||.....      .......+...+.+++++
T Consensus       170 ~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~------~~~~~~~~~~~p~~i~~~  242 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------STVLPFTGLNTPLAVAVD  242 (270)
T ss_dssp             GTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC------CEECCCCSCSCEEEEEEC
T ss_pred             CCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc------ceeeccCCCCCceeEEEC
Confidence            6899999998776544322 233678999999999888888788999999986652      122222334678999997


Q ss_pred             C--CeEEEEeCCCcEEEEECCcc
Q 009373          390 F--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       390 ~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +  ..+++...++.|+++++...
T Consensus       243 ~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          243 SDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             TTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCCEEEEECCCCEEEEEcCCCc
Confidence            5  56777778999999998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.43  E-value=4.5e-10  Score=113.95  Aligned_cols=316  Identities=12%  Similarity=0.044  Sum_probs=189.1

Q ss_pred             ecCCCEEEEEeCCCcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEEEeCCCcEEEEEcc--cCccceecccCcccc
Q 009373          167 LASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQ  243 (536)
Q Consensus       167 ~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg~~dg~i~vwd~~--~~~~~~~~~~~~~~~  243 (536)
                      +|.+.++++...+++|.++|..+++.+.++... ......++|+++++++++.|+.|.+||+.  +..            
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~------------  231 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT------------  231 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC------------
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc------------
Confidence            345567778888999999999999998887543 33456788999999999999999999985  331            


Q ss_pred             cceEEeeCCccCEEEEEEe------CCEEEEEe-cCCeEEEEeCCCceEeEeeecc------------ccEEEEe--ecC
Q 009373          244 NTQFRLWEHEGPITSLALD------LTRIYSGS-WDMTVRVWDRALLKCLKVLRHS------------DWVYGLA--PHD  302 (536)
Q Consensus       244 ~~~~~~~~h~~~v~~l~~~------~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~------------~~v~~~~--~~~  302 (536)
                       ....+.... ....++++      +++++++. .+++|.++|..+.+.+..+...            ..+..+.  +++
T Consensus       232 -~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~  309 (567)
T 1qks_A          232 -TVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  309 (567)
T ss_dssp             -EEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             -EeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence             233333322 34566664      56666554 5699999999999988876521            1344554  443


Q ss_pred             C-EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCccccccceeeeccCC
Q 009373          303 T-TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       303 ~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      . +++... +|.|.++|..+.+.+.............+.|+|+|++++++. .++.|.++|+.+++..... .+.....|
T Consensus       310 ~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i-~vgg~~Ph  388 (567)
T 1qks_A          310 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE-DTGGQTPH  388 (567)
T ss_dssp             SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE-ECSSSSBC
T ss_pred             CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE-eccCcCCC
Confidence            4 444444 689999999876543332222444567889999999876654 5788999999988422111 11011234


Q ss_pred             CCCeEEEEEcC--C-eEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEe
Q 009373          380 TGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG  455 (536)
Q Consensus       380 ~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg  455 (536)
                      .+.-..+ ++|  . ..+++. .++.|.++|..+.....  ..-+.+..+..        .+....-...++++.++...
T Consensus       389 pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~--~~~kvv~~i~~--------~g~g~~~i~~~p~~~~l~v~  457 (567)
T 1qks_A          389 PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD--NAWKILDSFPA--------LGGGSLFIKTHPNSQYLYVD  457 (567)
T ss_dssp             CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEEC--------SCSCCCCEECCTTCSEEEEE
T ss_pred             Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc--ccCEEEEEEec--------CCCCCEEEEeCCCCCeEEEe
Confidence            4322222 454  3 334443 46899999987632110  00011111110        11111112345666655554


Q ss_pred             cC-------CCeEEEEeCCch-----hhH-HHHHHh-hhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373          456 GE-------EGIVRIWNFSQA-----FEI-ERRARA-LRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       456 ~~-------Dg~i~vW~~~~~-----~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      ..       .+.|.++|+.+.     ... +..... ..++.   ..-++..+++++|+|..+....+..
T Consensus       458 ~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~G~~~~~s~~~~  524 (567)
T 1qks_A          458 ATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGIT---EGQPRVVQGEFNKDGTEVWFSVWNG  524 (567)
T ss_dssp             CTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCC---SSCCEEEEEEECTTSSEEEEEEECC
T ss_pred             cCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccC---CCCcceEeeeECCCCCEEEEEeecC
Confidence            42       458999999876     110 000000 00000   0124567899999999988776643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.42  E-value=1.9e-10  Score=111.70  Aligned_cols=260  Identities=12%  Similarity=0.051  Sum_probs=164.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      ++..++.++.++.|..+|..+|+.+................+..+++++.++.|..+|..+++..-. ....   .....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~-~~~~---~~~~~  177 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWT-VNLD---MPSLS  177 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEE-EECC---C----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEE-EeCC---CCcee
Confidence            4667888899999999999999988766443221111112356888899999999999988752111 0000   00000


Q ss_pred             eeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecccc-----------E-EEEeecCCEEEEec-CCcEEE
Q 009373          249 LWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDW-----------V-YGLAPHDTTVASTS-GSDVYI  315 (536)
Q Consensus       249 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----------v-~~~~~~~~~l~~~~-d~~i~i  315 (536)
                      ....    ......++.++.++.++.+..+|..+++.+........           + ......+..++.++ ++.+..
T Consensus       178 ~~~~----~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~  253 (376)
T 3q7m_A          178 LRGE----SAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA  253 (376)
T ss_dssp             -CCC----CCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred             ecCC----CCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence            0011    12233567888899999999999999998877662211           1 01112344455555 899999


Q ss_pred             EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc-CCCCCeEEEEEcCCeEE
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI-PHTGPVNSLAFEFPWLV  394 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~  394 (536)
                      +|..+++.+.....   .....+..  ++..+++++.+|.+..+|..++.      .+.... .....+.........|+
T Consensus       254 ~d~~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~------~~w~~~~~~~~~~~~~~~~~~~l~  322 (376)
T 3q7m_A          254 LDLRSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGV------TLWTQSDLLHRLLTSPVLYNGNLV  322 (376)
T ss_dssp             EETTTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCC------EEEEECTTTTSCCCCCEEETTEEE
T ss_pred             EECCCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCc------EEEeecccCCCcccCCEEECCEEE
Confidence            99999998876642   22334443  36678888899999999998883      333222 12223344445678999


Q ss_pred             EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEe
Q 009373          395 SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  465 (536)
Q Consensus       395 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~  465 (536)
                      .++.+|.|.++|..+++..+....                 .+ ..........+..|+.++.||.|+.|+
T Consensus       323 v~~~~g~l~~~d~~tG~~~~~~~~-----------------~~-~~~~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          323 VGDSEGYLHWINVEDGRFVAQQKV-----------------DS-SGFQTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEEC-----------------CT-TCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEec-----------------CC-CcceeCCEEECCEEEEEeCCCEEEEEe
Confidence            999999999999988643322111                 00 000111122366888899999999987

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.41  E-value=7.6e-10  Score=112.24  Aligned_cols=305  Identities=14%  Similarity=0.095  Sum_probs=179.9

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECC--CCceeeeeCCCCc-eEEEEe----cCCCEEEEEeC-CCcEEEEEcccCc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLE--DGFSIASSKPLGC-TIRAVA----ADKKLLVAGGT-DGFIHCWRAVEVL  231 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~--~~~~~~~~~~~~~-~v~~~~----~~~~~l~sg~~-dg~i~vwd~~~~~  231 (536)
                      .+..+.|+|||+++++++.|+.|.+||+.  +++.+..+..... .-.+++    |+|++++++.. +++|.++|..+.+
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~  277 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE  277 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence            46689999999999999999999999995  7888777755443 345777    69988877665 5999999987654


Q ss_pred             cceecccCcccccceEEeeCCc-cCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeE--eeeccccEE--EEeecCC
Q 009373          232 PHLFDISGSEKQNTQFRLWEHE-GPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLK--VLRHSDWVY--GLAPHDT  303 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~v~--~~~~~~~  303 (536)
                      ... .+........  ....|. ..+..+..   .+..+++...+|.|.++|..+.+...  .+.......  .++++++
T Consensus       278 ~~~-~i~~~~~~~~--~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          278 PKK-IQSTRGMTYD--EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR  354 (567)
T ss_dssp             EEE-EEECCEECTT--TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             EEE-EEeccccccc--cccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCC
Confidence            211 0000000000  000011 24566665   23456666778999999987654332  222333333  3558899


Q ss_pred             EEEEec--CCcEEEEeCCCCcEEEEEcc----ccccceEEEEEeCCCCEE-EEEc-CCCcEEEEEcccCcc-ccccceee
Q 009373          304 TVASTS--GSDVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHTGDFL-FTGG-EDGAIHMYEIINDCT-EANVLLVA  374 (536)
Q Consensus       304 ~l~~~~--d~~i~i~d~~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l-~tg~-~dg~i~iwd~~~~~~-~~~~~~~~  374 (536)
                      +++++.  ++.|.++|+.+++.+..+..    .|.+.-..+ ++|++..+ +++. .++.|.++|..+... ....+.+.
T Consensus       355 ~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          355 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             EEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            887665  68999999999998777653    243322222 68875544 4553 468999999887321 11234556


Q ss_pred             eccCCCCCeEEEEEcC--CeEEEEeC-------CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEE
Q 009373          375 TWIPHTGPVNSLAFEF--PWLVSAAG-------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSV  445 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~--~~l~s~s~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  445 (536)
                      ++......-..+..+|  .+|++...       .++|.|+|+.+.......   .....+ ...+. ..+......+..+
T Consensus       434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~---~~~~~~-~~~~~-~~~~~~~~~~~~~  508 (567)
T 1qks_A          434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD---PEFKTL-PIAEW-AGITEGQPRVVQG  508 (567)
T ss_dssp             EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC---CCEEEE-CHHHH-HTCCSSCCEEEEE
T ss_pred             EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC---CCcEEe-ccccc-cccCCCCcceEee
Confidence            6554433334456666  57777653       359999999875110000   000000 00000 0000112344555


Q ss_pred             Eec--CCEE-EEe-c---CCCeEEEEeCCchhhHH
Q 009373          446 DIG--ADRI-VCG-G---EEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       446 ~~~--~~~l-~sg-~---~Dg~i~vW~~~~~~~~~  473 (536)
                      .++  |+++ +|. +   .++.|.|+|..+.+...
T Consensus       509 ~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  543 (567)
T 1qks_A          509 EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  543 (567)
T ss_dssp             EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             eECCCCCEEEEEeecCCCCCCcEEEEECCCceEEE
Confidence            554  5543 442 2   47999999999987654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.40  E-value=2.8e-09  Score=99.53  Aligned_cols=233  Identities=7%  Similarity=-0.036  Sum_probs=154.7

Q ss_pred             eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeee-eCCCCceEEEE--ecCCCEEEEEeCCCcEEEEEcccC
Q 009373          154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAV--AADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~--~~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      +......+.++++.++|++.++...++.|.+||.. ++.... +......+..+  .+++.++++...++.|..+|.. +
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34456788999999999988887788999999988 554432 22222344444  4677777776668889999876 3


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEe--ecCCE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTT  304 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~  304 (536)
                      ..            ...........+.++++  ++..+++...++.|..+|.. ++.... +. ....+.++.  +++++
T Consensus        93 ~~------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l  159 (300)
T 2qc5_A           93 GF------------TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL  159 (300)
T ss_dssp             CE------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             Ce------------EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence            21            11122223456888888  45556665557899999987 554422 22 234566665  67887


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      +++.. ++.|..+|. +++........+...+..++++++|.+.++....+.|.+||. ++.     ........+...+
T Consensus       160 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~  232 (300)
T 2qc5_A          160 WFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE-----ISEYDIPTPNARP  232 (300)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCE
T ss_pred             EEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc-----EEEEECCCCCCCc
Confidence            77766 688999998 565544322234457889999999987777777788999998 331     1112223455678


Q ss_pred             EEEEEcC-CeEEEEe-CCCcEEEEECC
Q 009373          384 NSLAFEF-PWLVSAA-GDGKLSLIDVR  408 (536)
Q Consensus       384 ~~l~~~~-~~l~s~s-~dg~i~vwd~~  408 (536)
                      .++++++ ..|..+. .++.|..||..
T Consensus       233 ~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          233 HAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             EEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             eEEEECCCCCEEEeccCCCeEEEECCC
Confidence            8999975 3444444 56899999873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.40  E-value=1.5e-09  Score=101.41  Aligned_cols=233  Identities=10%  Similarity=0.021  Sum_probs=154.1

Q ss_pred             eCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee-eeeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcccCc
Q 009373          155 YGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI-ASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~-~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      ..+...+.++++++++.++++...++.|..|+.. ++.. .........+..  +.+++.++++...++.|.+||. ++.
T Consensus        53 ~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~  130 (299)
T 2z2n_A           53 PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK  130 (299)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred             CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence            3456789999999999988887778999999986 4322 222222333444  4477877777777889999987 432


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEe-ee-ccccEEEEe--ecCCEE
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKV-LR-HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~--~~~~~l  305 (536)
                      .            .......+...+..+++  ++..+++...++.|..||. +++.... .. ....+.++.  +++.++
T Consensus       131 ~------------~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~  197 (299)
T 2z2n_A          131 I------------REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALW  197 (299)
T ss_dssp             E------------EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred             E------------EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEE
Confidence            1            11112234456888888  4455555556789999998 6655432 22 334456665  677877


Q ss_pred             EEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          306 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      ++.. ++.|.+||. +++........+...+.+++++++|.+.++...++.|..||. ++.     .....+..+...+.
T Consensus       198 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-----~~~~~~~~~~~~~~  270 (299)
T 2z2n_A          198 FVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-----IEEYPIQIKSAEPH  270 (299)
T ss_dssp             EEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-----EEEEECSSSSCCEE
T ss_pred             EEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-----eEEEeCCCCCCccc
Confidence            7766 688999999 666443222234567899999999997777767889999998 331     11122334556788


Q ss_pred             EEEEcCCeEEEEeCCCcEEEEECCc
Q 009373          385 SLAFEFPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       385 ~l~~~~~~l~s~s~dg~i~vwd~~~  409 (536)
                      ++++....|..+...+.|..++.++
T Consensus       271 ~i~~~~g~l~v~~~~~~l~~~~~~~  295 (299)
T 2z2n_A          271 GICFDGETIWFAMECDKIGKLTLIK  295 (299)
T ss_dssp             EEEECSSCEEEEETTTEEEEEEEC-
T ss_pred             eEEecCCCEEEEecCCcEEEEEcCc
Confidence            9988335666665567788888765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.37  E-value=2.9e-09  Score=102.62  Aligned_cols=271  Identities=10%  Similarity=-0.033  Sum_probs=169.1

Q ss_pred             EecCCCEEEEEeC--CC---cEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccC
Q 009373          166 VLASAKLLFTSGY--DS---IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEV  230 (536)
Q Consensus       166 ~~~~~~~l~sgs~--dg---~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~  230 (536)
                      ..|+++++++...  ..   +|.++|..+++.+..+.....+-..++||++.++++.          .++.|.+||..+.
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            3467777766653  22   8899999999998888765556778889999999886          3678999998765


Q ss_pred             ccceecccCcccccceEEeeC-------CccCEEEEEE--eCCEEEEEec--CCeEEEEeCCCceEeEe-eeccccEEEE
Q 009373          231 LPHLFDISGSEKQNTQFRLWE-------HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKV-LRHSDWVYGL  298 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~--~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~v~~~  298 (536)
                      +.             ...+.-       +...-..+.+  ++++|+.+..  ++.|.++| .+++.+.. +.....+ .+
T Consensus       108 ~~-------------~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~-~~  172 (373)
T 2mad_H          108 LP-------------IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY-HI  172 (373)
T ss_pred             cE-------------EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE-EE
Confidence            31             111110       0122335666  7888888774  57899999 99998888 6644433 23


Q ss_pred             eecC-CEEEEec-CCcEEEEeCCCCcEEEEEcc----ccccc-eEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373          299 APHD-TTVASTS-GSDVYIWDTNSGCLLTVVNG----AHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       299 ~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~----~~~~~-i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                      .+.+ +.+++.+ ||.+.++|. +++.......    ....+ .....+.+++..++..+.++.+.+.|+.....    .
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~  247 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----T  247 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----e
Confidence            3443 3444444 899999999 8876643210    01111 12345666665555445788999999865421    1


Q ss_pred             eeeeccC----------CCCCeEEEEEcC--CeEEEEeC----------CCcEEEEECCcccccCCCCCCCceeeEEeeC
Q 009373          372 LVATWIP----------HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  429 (536)
Q Consensus       372 ~~~~~~~----------h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  429 (536)
                      .+..+.-          .......+++++  +.++++..          ++.|.++|..+.+....              
T Consensus       248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~--------------  313 (373)
T 2mad_H          248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ--------------  313 (373)
T ss_pred             EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEE--------------
Confidence            1111110          112233466665  56665543          35799999987532211              


Q ss_pred             CCeeeeccccccEEEEEecCC-EEEEec-CCCeEEEEeCCchhhHHH
Q 009373          430 PPQRMLHGFECNLLSVDIGAD-RIVCGG-EEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       430 ~~~~~~~~~~~~v~~~~~~~~-~l~sg~-~Dg~i~vW~~~~~~~~~~  474 (536)
                          ..-+....-..++++++ +++++. .++.|.++|..+++.+.+
T Consensus       314 ----i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          314 ----ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             ----EECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                11122344456667777 677776 589999999999887755

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.35  E-value=1.1e-10  Score=123.83  Aligned_cols=239  Identities=13%  Similarity=-0.048  Sum_probs=153.0

Q ss_pred             CccccEEEEEEecCCCEEEEEeCC-----CcEEEEECCCCceeeeeCCCCc--eEEEEecCCCEEEEEeCCCc-------
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYD-----SIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTDGF-------  221 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg~-------  221 (536)
                      +|...+..++|+|||++|+.++.+     ..|++||+.+++.+.... +..  .-.+++|| +.|+.++.++.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            455578899999999999877654     469999999998765321 111  23467799 88888877654       


Q ss_pred             -------EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC-----eEEEEeCCCc--eE
Q 009373          222 -------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-----TVRVWDRALL--KC  285 (536)
Q Consensus       222 -------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-----~i~iwd~~~~--~~  285 (536)
                             |++|++.++..         ....+.....+...+..+.|  ++++|+..+.++     .|.+||+.++  ++
T Consensus       238 ~~~~~~~v~~~~lgt~~~---------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQS---------ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             -CCCCCEEEEEETTSCGG---------GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred             cCCCCCEEEEEECCCCch---------hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence                   88888866521         00112222233345788888  778888777554     8999999876  31


Q ss_pred             eEeee-cc-ccEEEEeecCCEEEEec-C----CcEEEEeCCCC-cEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEE
Q 009373          286 LKVLR-HS-DWVYGLAPHDTTVASTS-G----SDVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  357 (536)
Q Consensus       286 ~~~~~-~~-~~v~~~~~~~~~l~~~~-d----~~i~i~d~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~  357 (536)
                      ...+. +. .....+.+++..|+..+ .    +.|.+||+.++ .....+...+...+..+.++ ++.++++...|+..+
T Consensus       309 ~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  387 (741)
T 1yr2_A          309 VTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ  387 (741)
T ss_dssp             CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred             cEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            33333 33 33334458888777665 2    35999999885 23334434455567778887 567788888899888


Q ss_pred             EEEcccCccccccceeeeccC-CCCCeEEEEEcC--C-eEEEEeC---CCcEEEEECCccc
Q 009373          358 MYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF--P-WLVSAAG---DGKLSLIDVRKLL  411 (536)
Q Consensus       358 iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~-~l~s~s~---dg~i~vwd~~~~~  411 (536)
                      ||.+....     .....+.. +.+.|..+.+++  + ++++.+.   .++|++||+.++.
T Consensus       388 l~~~~~~g-----~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          388 VLAFDLDG-----KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEETTS-----CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEeCCC-----CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88765221     22333433 366788888875  3 3333332   4789999987653

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.33  E-value=3.9e-11  Score=110.68  Aligned_cols=236  Identities=10%  Similarity=-0.026  Sum_probs=153.7

Q ss_pred             CCEEEEEecCCeEEEEeCCCceEeEeeecc--ccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEE
Q 009373          263 LTRIYSGSWDMTVRVWDRALLKCLKVLRHS--DWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSL  338 (536)
Q Consensus       263 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l  338 (536)
                      ++.|++++.|+.|.+||.++++.+..+...  ..+.++.  |+|++++ +.++.|..||. +++.+..+..+....+.++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~   82 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTA   82 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCcccccc
Confidence            467899999999999999999999998832  2455444  8999888 55788999999 8999998875434578899


Q ss_pred             EEeCCCCEEEEEcC-CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc--CCeEEEEeCCCcEEEEECCcccccCC
Q 009373          339 ARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE--FPWLVSAAGDGKLSLIDVRKLLRSGR  415 (536)
Q Consensus       339 ~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~  415 (536)
                      .+.|+|+++++.+. ++.|..+|. +++.......-.....+......+++.  ++++++...++.|..||.. ++..+.
T Consensus        83 ~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~  160 (276)
T 3no2_A           83 RILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNS  160 (276)
T ss_dssp             EECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             EECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEE
Confidence            99999999999887 777777775 342111111000111222234444554  5899999999999999987 544432


Q ss_pred             CCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhh-hcccchhHHHhhhhc
Q 009373          416 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARAL-RGIRLENRMRRRKLQ  494 (536)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  494 (536)
                      ....                 +. .......++++.+++++.++.|..+|..+|+.+.+..... ++.+     -..+..
T Consensus       161 ~~~~-----------------~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-----l~~~~~  217 (276)
T 3no2_A          161 VKLS-----------------GT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQ-----LFFVAQ  217 (276)
T ss_dssp             EECS-----------------SC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCC-----CSEEEE
T ss_pred             EECC-----------------CC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcc-----cccccc
Confidence            2111                 00 1112334567788988888999999999898876654211 1111     122456


Q ss_pred             cccccCCCCcceeEeec--------ccC--CcCCCcceeec
Q 009373          495 TEMSSKGGRTDQCSVAA--------KKN--PMNGNRRSVWH  525 (536)
Q Consensus       495 ~~~~~~g~~~~~~~~~~--------~~~--~~~~~~~~~~~  525 (536)
                      +...++|..+++.+-..        ...  .++.+.+.+|.
T Consensus       218 ~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~  258 (276)
T 3no2_A          218 LFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQ  258 (276)
T ss_dssp             EEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEE
T ss_pred             ceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEE
Confidence            67778887666543111        112  22367778883

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.32  E-value=4.2e-10  Score=103.58  Aligned_cols=229  Identities=11%  Similarity=0.014  Sum_probs=143.9

Q ss_pred             EEEEecCCCEEE-EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEe
Q 009373          203 IRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       203 v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd  279 (536)
                      -.++.+++++++ +.+.++.|.+|+..+....             .....+...+.++++  +++ ++.+..++.|.+||
T Consensus        28 ~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d   93 (270)
T 1rwi_B           28 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-------------VLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLA   93 (270)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEECC-----E-------------ECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEEC
T ss_pred             ceEECCCCCEEEEccCCCCcEEEecCCCcccc-------------eEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEe
Confidence            345568888666 4477899999987543211             111123345677888  445 44444488999999


Q ss_pred             CCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCc
Q 009373          280 RALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGA  355 (536)
Q Consensus       280 ~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~  355 (536)
                      ........... ....+.++.  ++++++++.. ++.|.+|+..+....... ......+.+++++++|+++++...++.
T Consensus        94 ~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~  172 (270)
T 1rwi_B           94 AGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNR  172 (270)
T ss_dssp             TTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTE
T ss_pred             CCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCE
Confidence            87654432211 224566665  6788777766 688999987665443322 123346788999999998888777889


Q ss_pred             EEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee
Q 009373          356 IHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR  433 (536)
Q Consensus       356 i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (536)
                      |.+||.....      .......+...+.++++++  ..+++...++.|.+||........                   
T Consensus       173 i~~~~~~~~~------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-------------------  227 (270)
T 1rwi_B          173 VVKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-------------------  227 (270)
T ss_dssp             EEEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-------------------
T ss_pred             EEEEecCCCc------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-------------------
Confidence            9999987652      2222223346788999986  344444557899999986531110                   


Q ss_pred             eeccccccEEEEE--ecCCEEEEecCCCeEEEEeCCchhh
Q 009373          434 MLHGFECNLLSVD--IGADRIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       434 ~~~~~~~~v~~~~--~~~~~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                      ....+.....++.  ++++.+++...++.|+++++...+.
T Consensus       228 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          228 LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            0011112334444  4566888888999999999987653

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.31  E-value=1.8e-09  Score=100.89  Aligned_cols=184  Identities=13%  Similarity=0.059  Sum_probs=124.4

Q ss_pred             EEEEecCCC-EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEe
Q 009373          203 IRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       203 v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd  279 (536)
                      -.++.++++ +++++..++.|..|+..++               ...+..+...+.++++  ++..+++...++.|.+||
T Consensus        32 g~~~d~~g~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           32 GPVYVPARSAVIFSDVRQNRTWAWSDDGQ---------------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR   96 (296)
T ss_dssp             EEEEEGGGTEEEEEEGGGTEEEEEETTSC---------------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             CCeEeCCCCEEEEEeCCCCEEEEEECCCC---------------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence            356678888 7888889999999998653               2234456677899999  556666666678999999


Q ss_pred             CCCceEeEeee-c----cccEEE--EeecCCEEEEe----c--------------CCcEEEEeCCCCcEEEEEccccccc
Q 009373          280 RALLKCLKVLR-H----SDWVYG--LAPHDTTVAST----S--------------GSDVYIWDTNSGCLLTVVNGAHVGN  334 (536)
Q Consensus       280 ~~~~~~~~~~~-~----~~~v~~--~~~~~~~l~~~----~--------------d~~i~i~d~~~~~~~~~~~~~~~~~  334 (536)
                      ..+++...... .    ...+..  +.++|+++++.    .              .+.|..+|.. ++.. .+. .+...
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~-~~~~~  173 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API-RDRVK  173 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-CCCSS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-cCCCC
Confidence            98887654432 1    112333  44889888863    2              2456667665 4433 332 35667


Q ss_pred             eEEEEEeCCCCEEEEEcCCCcEEEEEcc-cCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECC
Q 009373          335 TKSLARSHTGDFLFTGGEDGAIHMYEII-NDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       335 i~~l~~~~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~  408 (536)
                      ...++|+|+++.+++.+.++.|.+|++. ++.....   ...+..+...+.++++++ ..|.++. ++.|.+||..
T Consensus       174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~---~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~  245 (296)
T 3e5z_A          174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ---GVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD  245 (296)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE---EEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT
T ss_pred             CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC---CeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC
Confidence            8899999999988888888999999997 3311000   111233566678899976 3455555 8899999975

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.31  E-value=1.9e-09  Score=101.58  Aligned_cols=240  Identities=6%  Similarity=-0.025  Sum_probs=148.7

Q ss_pred             eeeCccccEEEEEEecCCCEEEE-------EeCCCcEEEEECCCCceeeeeC----CCCceEEEE--ecCCCEEEEEeCC
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFT-------SGYDSIVRMWHLEDGFSIASSK----PLGCTIRAV--AADKKLLVAGGTD  219 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~s-------gs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~--~~~~~~l~sg~~d  219 (536)
                      .+.+.-....+++|++++.++++       +..++.|.+||..+++......    ++...+..+  .+++..++.++..
T Consensus        12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~   91 (314)
T 1pjx_A           12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR   91 (314)
T ss_dssp             EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred             hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence            34444556789999999988888       6778999999988887543222    122334444  4662344555545


Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC---------------CeEEEEeCCC
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD---------------MTVRVWDRAL  282 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d---------------g~i~iwd~~~  282 (536)
                      +.|.+||.. +....+. ....       .......+.++++  +++.+++...+               +.|..||.. 
T Consensus        92 ~~l~~~d~~-g~~~~~~-~~~~-------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  161 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIA-KKDS-------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-  161 (314)
T ss_dssp             TEEEEEETT-SCEEECC-SBCT-------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred             CCEEEEeCC-CCEEEEE-eccC-------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence            578899986 4311100 0000       0011245778888  45566655554               577778766 


Q ss_pred             ceEeEeeeccccEE--EEe----ecCCEEEEe-c-CCcEEEEeCC-CCcE-----EEEEccccc-cceEEEEEeCCCCEE
Q 009373          283 LKCLKVLRHSDWVY--GLA----PHDTTVAST-S-GSDVYIWDTN-SGCL-----LTVVNGAHV-GNTKSLARSHTGDFL  347 (536)
Q Consensus       283 ~~~~~~~~~~~~v~--~~~----~~~~~l~~~-~-d~~i~i~d~~-~~~~-----~~~~~~~~~-~~i~~l~~~~~~~~l  347 (536)
                      ++............  .+.    ++++.++.+ . ++.|.+||+. +++.     ...+. ++. ..+..++++++|.++
T Consensus       162 g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          162 GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEE
T ss_pred             CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECCCCCEE
Confidence            55444333222333  344    666555444 4 6889999986 4432     22221 233 567889999999988


Q ss_pred             EEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECCc
Q 009373          348 FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRK  409 (536)
Q Consensus       348 ~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~  409 (536)
                      ++...++.|.+||..++      ..+..+..+...+.+++|++  ..|+.+ ..++.|..|++..
T Consensus       241 v~~~~~~~i~~~d~~~g------~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGG------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEETTTEEEEECTTCB------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEcCCCEEEEEcCCCC------cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            88878889999998755      23334445667899999975  445544 4568899999875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.30  E-value=8.5e-10  Score=116.54  Aligned_cols=228  Identities=10%  Similarity=0.023  Sum_probs=141.5

Q ss_pred             EEEecCCCEEEEEeCCC-----cEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCe--
Q 009373          204 RAVAADKKLLVAGGTDG-----FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT--  274 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~--  274 (536)
                      .+++|||++|+.++.++     .|++||+.++...            ...+  ....+.+++|  |++.|+.++.++.  
T Consensus       130 ~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~------------~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~  195 (710)
T 2xdw_A          130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL------------PDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDG  195 (710)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE------------EEEE--EEECSCCEEECTTSSEEEEEECCCCSS
T ss_pred             EEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC------------cccc--cCcccceEEEEeCCCEEEEEEECCccc
Confidence            46679999998776543     8999999886411            1111  1122566888  7788998888776  


Q ss_pred             --------------EEEEeCCCceEe--Eeee---ccccEEEE--eecCCEEEEec------CCcEEEEeCCC------C
Q 009373          275 --------------VRVWDRALLKCL--KVLR---HSDWVYGL--APHDTTVASTS------GSDVYIWDTNS------G  321 (536)
Q Consensus       275 --------------i~iwd~~~~~~~--~~~~---~~~~v~~~--~~~~~~l~~~~------d~~i~i~d~~~------~  321 (536)
                                    |++|++.+++..  ..+.   +...+..+  ++++++|+.++      +..|.+||+.+      +
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                          999999887632  2222   33444444  49999887654      35799999986      4


Q ss_pred             c-EEEEEccccccceEEEEEeCCCCEEEEEcCC----CcEEEEEcccCccccccceeeeccCCCC--CeEEEEEc-C-Ce
Q 009373          322 C-LLTVVNGAHVGNTKSLARSHTGDFLFTGGED----GAIHMYEIINDCTEANVLLVATWIPHTG--PVNSLAFE-F-PW  392 (536)
Q Consensus       322 ~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~-~-~~  392 (536)
                      . ....+. .+...+.. .|+|+|+.|+..+.+    +.|.+||+.++..    .....+..|..  .+..++|+ . .+
T Consensus       276 ~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~l  349 (710)
T 2xdw_A          276 ILKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE----SKWKVLVPEHEKDVLEWVACVRSNFL  349 (710)
T ss_dssp             SCCCEEEE-CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEEEETTTEE
T ss_pred             ccceEEee-CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc----ccceeccCCCCCCeEEEEEEEcCCEE
Confidence            3 344443 34444544 488899877766553    3599999877621    12233444544  67888887 4 46


Q ss_pred             EEEEeCCCc--EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--CCEEE-E---ecCCCeEEEE
Q 009373          393 LVSAAGDGK--LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIV-C---GGEEGIVRIW  464 (536)
Q Consensus       393 l~s~s~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-s---g~~Dg~i~vW  464 (536)
                      +++...|+.  |.+||+.++..                   ...+..+...+..++++  ++.++ +   ....++|++|
T Consensus       350 v~~~~~~g~~~l~~~~~~~g~~-------------------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~  410 (710)
T 2xdw_A          350 VLCYLHDVKNTLQLHDLATGAL-------------------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHC  410 (710)
T ss_dssp             EEEEEETTEEEEEEEETTTCCE-------------------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEE
T ss_pred             EEEEEECCEEEEEEEECCCCCE-------------------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEE
Confidence            667777875  55666644311                   11122234455566554  44333 2   2346889999


Q ss_pred             eCCchh
Q 009373          465 NFSQAF  470 (536)
Q Consensus       465 ~~~~~~  470 (536)
                      |+.+++
T Consensus       411 d~~tg~  416 (710)
T 2xdw_A          411 DLTKEE  416 (710)
T ss_dssp             ETTSSS
T ss_pred             ECCCCc
Confidence            998876

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.29  E-value=5e-10  Score=106.56  Aligned_cols=274  Identities=13%  Similarity=0.061  Sum_probs=171.2

Q ss_pred             EEEecCCCEEEEEeC-----CCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcc
Q 009373          164 VFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAV  228 (536)
Q Consensus       164 v~~~~~~~~l~sgs~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~  228 (536)
                      ....|+++.++....     ++.|.+.|..+++.+.++.....+-..++|+++.++++.          .++.|.+||..
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            345788888887765     689999999999998888654444488899999888776          36789999998


Q ss_pred             cCccceecccCcccccceEEeeCC-------ccCEEEEEE--eCCEEEEEec--CCeEEEEeCCCceEeEeeeccccEEE
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEH-------EGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYG  297 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~--~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~v~~  297 (536)
                      +..             ....+.-.       ...-..+.+  ++++++.+..  ++.|.++|+.+++.+.++.-.+. ..
T Consensus       118 t~~-------------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~  183 (386)
T 3sjl_D          118 TLL-------------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YH  183 (386)
T ss_dssp             TCC-------------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EE
T ss_pred             CCe-------------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ce
Confidence            764             22222100       112334556  7888887764  68999999999999998874432 23


Q ss_pred             Eeec-CCEEEE-ecCCcEEEEeCCC-CcEEEEEcccc----ccceE-EEEEe-CCCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          298 LAPH-DTTVAS-TSGSDVYIWDTNS-GCLLTVVNGAH----VGNTK-SLARS-HTGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       298 ~~~~-~~~l~~-~~d~~i~i~d~~~-~~~~~~~~~~~----~~~i~-~l~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                      +.|. .+.+++ +.||++.+.++.+ ++...... .+    ...+. ...|. ++|++++ .+.+|.|++.|+.+...  
T Consensus       184 ~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~-~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~--  259 (386)
T 3sjl_D          184 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA--  259 (386)
T ss_dssp             EEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC--
T ss_pred             eecCCCceeEEECCCCCEEEEECCCCCeEEEeec-ceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc--
Confidence            3343 344444 4489999999976 55433221 11    11221 23554 5665555 55689999999876531  


Q ss_pred             ccceeeecc---------C-CCCCeEEEEEcC--CeEEEEeC----------CCcEEEEECCcccccCCCCCCCceeeEE
Q 009373          369 NVLLVATWI---------P-HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       369 ~~~~~~~~~---------~-h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                        .....+.         + ..+....+++++  +.++....          .+.|.+.|+.+.+...            
T Consensus       260 --~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~------------  325 (386)
T 3sjl_D          260 --KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA------------  325 (386)
T ss_dssp             --EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE------------
T ss_pred             --eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE------------
Confidence              1111111         0 112333455554  56665532          2579999998853221            


Q ss_pred             eeCCCeeeeccccccEEEEEecCC-EEE-EecCCCeEEEEeCCchhhHHHH
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGAD-RIV-CGGEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~-~l~-sg~~Dg~i~vW~~~~~~~~~~~  475 (536)
                            ...-++...-+.++++++ +|+ +...++.|.++|..+++.+.+.
T Consensus       326 ------~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i  370 (386)
T 3sjl_D          326 ------KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV  370 (386)
T ss_dssp             ------EEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ------EEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe
Confidence                  111223333456666765 554 4567999999999998876554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=3.7e-09  Score=103.34  Aligned_cols=229  Identities=14%  Similarity=0.114  Sum_probs=150.4

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCccceec
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLFD  236 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~  236 (536)
                      .....|+++++++++++...++.|++||.+++...........+..++.++++.|+++..++  .|.+++..++..    
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~----  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWA----  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSSTTCEEEEEEGGGTTC----
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecCCCceEEEEEcCCCce----
Confidence            46789999999998888888899999999987765544333322378889999999988876  788888755421    


Q ss_pred             ccCcccccceEEeeC-CccCEEEEEEe--CCEEEEEecCCeEEEEeCCCceEeEe----ee-ccc-c---EEEEeec-CC
Q 009373          237 ISGSEKQNTQFRLWE-HEGPITSLALD--LTRIYSGSWDMTVRVWDRALLKCLKV----LR-HSD-W---VYGLAPH-DT  303 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~-h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~----~~-~~~-~---v~~~~~~-~~  303 (536)
                            ......+.. ....+.+++++  +..|+.+..++.|..||..++.....    .. ... .   =.++.++ +.
T Consensus       207 ------~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          207 ------PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             ------EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             ------eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence                  000101112 34556778884  46677777889999999987754322    11 111 1   2334464 55


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEcccc---------------ccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCcc
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAH---------------VGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCT  366 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~---------------~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~  366 (536)
                      ++++.. ++.|+.|+....  +..+. ++               -.....++++|+|.++++-+ .++.|+.|++.++. 
T Consensus       281 lyv~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~-  356 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY-  356 (409)
T ss_dssp             EEEEETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE-
T ss_pred             EEEEeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE-
Confidence            555555 688999997654  22221 12               23588999999999888888 88999999976652 


Q ss_pred             ccccceeeeccCC---------------CCCeEEEEEcC-C-eEEEEeCCCcEEEEEC
Q 009373          367 EANVLLVATWIPH---------------TGPVNSLAFEF-P-WLVSAAGDGKLSLIDV  407 (536)
Q Consensus       367 ~~~~~~~~~~~~h---------------~~~v~~l~~~~-~-~l~s~s~dg~i~vwd~  407 (536)
                            +.++.++               -.....|++++ . ++++-..++.|+.+++
T Consensus       357 ------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          357 ------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                  2222222               24578899986 3 4444555677777764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.27  E-value=3.8e-10  Score=107.85  Aligned_cols=183  Identities=13%  Similarity=0.035  Sum_probs=122.4

Q ss_pred             CceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEe
Q 009373          200 GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       200 ~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd  279 (536)
                      ....+++++...++++|+.++ +.+|++........+....  ..... ...+.+ |+.++|+++.|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~--~~~~~-~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTP--LTFKW-EKEIPD-VIFVCFHGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCC--CCCSE-EEECTT-EEEEEEETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccc--ccceE-EeeCCC-eeEEEECCCEEEEE-cCCcEEEEE
Confidence            456677778888888888875 4458875442111100000  11112 224566 99999988899988 889999999


Q ss_pred             CCCceEeEeee-ccccEEEEeecC-CEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEE
Q 009373          280 RALLKCLKVLR-HSDWVYGLAPHD-TTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  357 (536)
Q Consensus       280 ~~~~~~~~~~~-~~~~v~~~~~~~-~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~  357 (536)
                      +.+........ +...+.++.+.. +++++.+||.+.+||+.++....     +...|++++|+|+|  ++.|..||.++
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             chhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            98766544443 666777777433 34444459999999999887643     45689999999999  67899999999


Q ss_pred             EEEcccCcc--ccccceeeecc---CCCCCeEEEEEcC--CeEEE
Q 009373          358 MYEIINDCT--EANVLLVATWI---PHTGPVNSLAFEF--PWLVS  395 (536)
Q Consensus       358 iwd~~~~~~--~~~~~~~~~~~---~h~~~v~~l~~~~--~~l~s  395 (536)
                      +|+......  ...+.+-..+.   +|...|.+|.|.+  .++++
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            998877631  10110001112   5789999999975  35544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.26  E-value=1.6e-09  Score=112.86  Aligned_cols=276  Identities=13%  Similarity=0.043  Sum_probs=172.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-----------eEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----------TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..|+.++.++.|.-+|..+|+.+..+.....           ....+...+..+++++.|+.|..+|..+++..     
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~-----  151 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEV-----  151 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEE-----
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEE-----
Confidence            56777788899999999999999888754421           01122346778999999999999999888632     


Q ss_pred             CcccccceEEeeCC-c----cCEE-EEEEeCCEEEEEec------CCeEEEEeCCCceEeEeeeccc-------------
Q 009373          239 GSEKQNTQFRLWEH-E----GPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSD-------------  293 (536)
Q Consensus       239 ~~~~~~~~~~~~~h-~----~~v~-~l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~-------------  293 (536)
                              ..+..+ .    ..+. .....++.++.++.      ++.|+.+|..+++.+..+....             
T Consensus       152 --------W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~  223 (677)
T 1kb0_A          152 --------WHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK  223 (677)
T ss_dssp             --------EEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred             --------eeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence                    111111 0    1111 11234566666654      7999999999999988776211             


Q ss_pred             ----------------------cEEEEeecCCEEEEec-CC-------------------cEEEEeCCCCcEEEEEcccc
Q 009373          294 ----------------------WVYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGAH  331 (536)
Q Consensus       294 ----------------------~v~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~~  331 (536)
                                            ...++.+++..++.+. ++                   .|..+|..+|+.+..+...+
T Consensus       224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~  303 (677)
T 1kb0_A          224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP  303 (677)
T ss_dssp             HHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred             cccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC
Confidence                                  0123446677777665 32                   49999999999988775432


Q ss_pred             c--------cceEEEEEeCCC---CEEEEEcCCCcEEEEEcccCccccccceee-----eccCCCCCe------------
Q 009373          332 V--------GNTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCTEANVLLVA-----TWIPHTGPV------------  383 (536)
Q Consensus       332 ~--------~~i~~l~~~~~~---~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~h~~~v------------  383 (536)
                      .        .....+....+|   ..++.++.+|.++++|..+++.........     .+.....++            
T Consensus       304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~  383 (677)
T 1kb0_A          304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ  383 (677)
T ss_dssp             TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred             CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence            1        223333444477   689999999999999999884321110000     000000000            


Q ss_pred             ------------EEEEEcC--CeEEEEeCC-------------------------------------------CcEEEEE
Q 009373          384 ------------NSLAFEF--PWLVSAAGD-------------------------------------------GKLSLID  406 (536)
Q Consensus       384 ------------~~l~~~~--~~l~s~s~d-------------------------------------------g~i~vwd  406 (536)
                                  ..++++|  .++++...+                                           |.|..||
T Consensus       384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D  463 (677)
T 1kb0_A          384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD  463 (677)
T ss_dssp             ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred             EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence                        1467775  566665432                                           6677788


Q ss_pred             CCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHH
Q 009373          407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRA  476 (536)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~  476 (536)
                      +.+++..++...                  +....-..+...+..++.++.||.+++||..+++.+.+..
T Consensus       464 ~~tG~~~W~~~~------------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~  515 (677)
T 1kb0_A          464 PVAQKAAWSVEH------------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (677)
T ss_dssp             TTTTEEEEEEEE------------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCCcEEeecCC------------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence            777544332211                  1111112344567788889999999999999998876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.26  E-value=5e-10  Score=117.98  Aligned_cols=265  Identities=11%  Similarity=-0.025  Sum_probs=152.5

Q ss_pred             cCCCEEEEEeCCC---cEEEE--ECCCCceeeee------CCCCceE--EEEecCCCEEE-----EEeCCCcEEEEEccc
Q 009373          168 ASAKLLFTSGYDS---IVRMW--HLEDGFSIASS------KPLGCTI--RAVAADKKLLV-----AGGTDGFIHCWRAVE  229 (536)
Q Consensus       168 ~~~~~l~sgs~dg---~v~iw--d~~~~~~~~~~------~~~~~~v--~~~~~~~~~l~-----sg~~dg~i~vwd~~~  229 (536)
                      |+|.+++....++   .-.+|  +...+....-+      .+|...+  .+++|||++|+     .|+.+.+|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            6777766555443   33444  44444332222      1333334  45679999988     445567899999988


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCe-------------EEEEeCCCceE--eEeee--
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT-------------VRVWDRALLKC--LKVLR--  290 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~-------------i~iwd~~~~~~--~~~~~--  290 (536)
                      +....           ...+...  ....++|  +++.|+.++.|..             |++|++.++..  ...+.  
T Consensus       157 g~~~~-----------~~~~~~~--~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~  223 (695)
T 2bkl_A          157 GEWSK-----------VDVIEGG--KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT  223 (695)
T ss_dssp             CCBCS-----------SCCBSCC--TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred             CCCcC-----------CcccCcc--cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence            74210           0011111  1146778  7788999988776             99999988762  22222  


Q ss_pred             -ccccEEEEe--ecCCEEEEec-CC----cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc---CCCcEEEE
Q 009373          291 -HSDWVYGLA--PHDTTVASTS-GS----DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMY  359 (536)
Q Consensus       291 -~~~~v~~~~--~~~~~l~~~~-d~----~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~---~dg~i~iw  359 (536)
                       +...+.++.  ++|++++.++ ++    .|.++|..+++.....  .+...+....+ ++|.+++.+.   .++.|.+|
T Consensus       224 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~--~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~  300 (695)
T 2bkl_A          224 GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLV--KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEV  300 (695)
T ss_dssp             CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEE--ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEE
T ss_pred             CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEee--cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEE
Confidence             334555554  8898887766 44    6777877666543333  24445555556 5666444444   25789999


Q ss_pred             EcccCccccccceeeeccCC--CCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373          360 EIINDCTEANVLLVATWIPH--TGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  436 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (536)
                      |+.++...    ....+..|  ...+..++++. .++++...|+..+||.+...        +...          ..+.
T Consensus       301 d~~~~~~~----~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--------g~~~----------~~l~  358 (695)
T 2bkl_A          301 DPAKPARA----SWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLK--------GKPV----------RTVQ  358 (695)
T ss_dssp             BTTBCSGG----GCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETT--------CCEE----------EECC
T ss_pred             eCCCCCcc----CCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--------CCee----------EEec
Confidence            98776210    11222333  45678888875 46777788998888876521        0000          0011


Q ss_pred             cc-cccEEEEE--ecCCEEE----EecCCCeEEEEeCCchh
Q 009373          437 GF-ECNLLSVD--IGADRIV----CGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       437 ~~-~~~v~~~~--~~~~~l~----sg~~Dg~i~vW~~~~~~  470 (536)
                      .+ ...+..++  ++++.++    +....++|++||+.+++
T Consensus       359 ~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          359 LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            11 22333333  3445444    44456889999998765

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.24  E-value=6.3e-12  Score=82.86  Aligned_cols=46  Identities=37%  Similarity=0.488  Sum_probs=40.4

Q ss_pred             ccccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHH
Q 009373           62 STITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEF  107 (536)
Q Consensus        62 ~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~  107 (536)
                      ..+..||+|++.+||+||++.+++++++|||+|+.++.++.+|+.+
T Consensus         7 ~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             --CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            4588999999999999999999999999999999999999999974

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.23  E-value=3.8e-10  Score=107.86  Aligned_cols=170  Identities=11%  Similarity=-0.031  Sum_probs=125.8

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----------eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF-----------SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      .+..+++++...++++|+.++ +++|++++..           .... ..+.. |..+..+++.|+++ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCFHGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEEETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEECCCEEEEE-cCCcEEEEEch
Confidence            689999999999999999985 5569875433           1111 12334 66666688999999 88999999986


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEe
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVAST  308 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~  308 (536)
                      +..             .......|..++.++.+.+..+++++.||.|.+||+.++....   +...|.+++++.+-++.+
T Consensus       115 sl~-------------~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG~~vg  178 (388)
T 1xip_A          115 ELS-------------EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQLAVL  178 (388)
T ss_dssp             STT-------------CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSEEEEE
T ss_pred             hhh-------------ccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCceEEE
Confidence            642             2233456777888888844459999999999999999877643   456788888333334555


Q ss_pred             c-CCcEEEEeCCCCcE--EEEEc------c--ccccceEEEEEeCCCCEEEE
Q 009373          309 S-GSDVYIWDTNSGCL--LTVVN------G--AHVGNTKSLARSHTGDFLFT  349 (536)
Q Consensus       309 ~-d~~i~i~d~~~~~~--~~~~~------~--~~~~~i~~l~~~~~~~~l~t  349 (536)
                      . ||++++|+...++.  ..++.      .  +|...|.++.|.+++.++++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            5 99999999888775  55562      1  36788999999999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.23  E-value=2.7e-08  Score=92.76  Aligned_cols=232  Identities=9%  Similarity=-0.015  Sum_probs=150.4

Q ss_pred             eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee-eeCCCCceEEE--EecCCCEEEEEeCCCcEEEEEcccC
Q 009373          154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-SSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~-~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      +..+...+.++++.++++++++...++.|..||.. ++... ........+..  +.+++.++++...++.|..++.. +
T Consensus        57 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g  134 (300)
T 2qc5_A           57 VPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G  134 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred             CCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence            33445779999999999988877778899999988 55432 22222233444  44678877777778899999875 3


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTT  304 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~  304 (536)
                      ..            ....+......+.++++  +++..++...++.|..+|. +++......  ....+.++.  +++.+
T Consensus       135 ~~------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l  201 (300)
T 2qc5_A          135 TI------------YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGAL  201 (300)
T ss_dssp             CE------------EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred             CE------------EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCE
Confidence            21            11112223456788888  4555555555789999998 555443211  234566665  67777


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      +++.. .+.|.+||. +++........+...+.+++++++|.+.++...++.|..||.. +.     .....+......+
T Consensus       202 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~-----~~~~~~~~~~~~~  274 (300)
T 2qc5_A          202 WFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT-----IQEYQLQTENAEP  274 (300)
T ss_dssp             EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----EEEEECCSTTCCC
T ss_pred             EEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc-----EEEEECCccCCcc
Confidence            77776 578999998 5554443222345678999999999977777677899999983 31     1112223344567


Q ss_pred             EEEEEcC-CeEEEEeCCCcEEEEECC
Q 009373          384 NSLAFEF-PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       384 ~~l~~~~-~~l~s~s~dg~i~vwd~~  408 (536)
                      .++++++ ..|..++.. .|..+|.+
T Consensus       275 ~~i~~~~~g~l~v~~~~-~i~~~~p~  299 (300)
T 2qc5_A          275 HGITFGKDGSVWFALKC-KIGKLNLN  299 (300)
T ss_dssp             CCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred             ceeEeCCCCCEEEEccC-ceEEeCCC
Confidence            8888875 456555554 67777653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.23  E-value=3.3e-08  Score=95.18  Aligned_cols=239  Identities=9%  Similarity=-0.074  Sum_probs=153.3

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeeeCCC---------CceEEEEecCCC
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPL---------GCTIRAVAADKK  211 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~  211 (536)
                      +.++..-..+  .++++|||++|+.+.          .++.|.+||..+.+.+..+...         ...-..++|+|+
T Consensus        60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~  137 (373)
T 2mad_H           60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence            3444433344  899999999999886          3688999999998887765322         123457889999


Q ss_pred             EEEEEeC--CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEee
Q 009373          212 LLVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL  289 (536)
Q Consensus       212 ~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  289 (536)
                      +|+++..  ++.|.++| .+++             ....+....+.+.-....+..+++.+.||.+.++|. +++.....
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~  202 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGGS-------------SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAG  202 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCCC-------------EEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEE
Confidence            9998874  57899999 8763             122201111222211224456777888999999999 87766432


Q ss_pred             e------ccccEE---EEeec-CCEEEEecCCcEEEEeCCCCc--EEEEEcc---------ccccceEEEEEeCCCCEEE
Q 009373          290 R------HSDWVY---GLAPH-DTTVASTSGSDVYIWDTNSGC--LLTVVNG---------AHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       290 ~------~~~~v~---~~~~~-~~~l~~~~d~~i~i~d~~~~~--~~~~~~~---------~~~~~i~~l~~~~~~~~l~  348 (536)
                      .      ...++.   .+.++ +.+++...++.+.+.|+.++.  .+..+..         ........+.++|+++.++
T Consensus       203 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ly  282 (373)
T 2mad_H          203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIY  282 (373)
T ss_pred             eccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEE
Confidence            2      111111   12233 344555557889999997653  2222210         0122344578899998877


Q ss_pred             EEcC----------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-eEEEEe-CCCcEEEEECCccccc
Q 009373          349 TGGE----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLLRS  413 (536)
Q Consensus       349 tg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~~~  413 (536)
                      ++..          ++.|.++|..+.      +.+.++. -.....+++|++  + .++++. .++.|.++|+.+.+..
T Consensus       283 V~~~~~~~~~~~~~~~~V~VID~~t~------~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          283 LLTSEQSAWKLHAAAKEVTSVTGLVG------QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EEeccCCcccccCCCCeEEEEECCCC------EEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence            7643          357999999888      4555553 233578999986  4 677777 5899999999986443

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.22  E-value=1.6e-08  Score=95.10  Aligned_cols=234  Identities=11%  Similarity=0.064  Sum_probs=143.9

Q ss_pred             EEEEecCCCEEEE-------EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEecCC
Q 009373          203 IRAVAADKKLLVA-------GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSWDM  273 (536)
Q Consensus       203 v~~~~~~~~~l~s-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg  273 (536)
                      -.++.+++.++++       +..++.|.+||..++....+..         ....++...+.++++++  +.++.++.++
T Consensus        22 ~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------~~~~~~~~~~~~i~~~~~~g~l~v~~~~~   92 (314)
T 1pjx_A           22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------PEVNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------CEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             CceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------cccCCCCCCCceEEEecCCCcEEEEECCC
Confidence            3445577877777       6788999999986654211100         00112446788999943  4666666566


Q ss_pred             eEEEEeCCCceEeEe-ee-----ccccEEEEe--ecCCEEEEec-C---------------CcEEEEeCCCCcEEEEEcc
Q 009373          274 TVRVWDRALLKCLKV-LR-----HSDWVYGLA--PHDTTVASTS-G---------------SDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       274 ~i~iwd~~~~~~~~~-~~-----~~~~v~~~~--~~~~~l~~~~-d---------------~~i~i~d~~~~~~~~~~~~  329 (536)
                      .|.+||.. ++.... ..     ....+.++.  ++++++++.. +               +.|..||.. ++.....  
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--  168 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--  168 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec--
Confidence            89999988 665443 22     112355555  7788887766 3               467888876 5543332  


Q ss_pred             ccccceEEEEEe----CCCCEEE-EEcCCCcEEEEEcccCccccccceeeeccCCC-CCeEEEEEcC--CeEEEEeCCCc
Q 009373          330 AHVGNTKSLARS----HTGDFLF-TGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GPVNSLAFEF--PWLVSAAGDGK  401 (536)
Q Consensus       330 ~~~~~i~~l~~~----~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~--~~l~s~s~dg~  401 (536)
                      .+......++++    |+++.++ +...++.|.+||+..............+..+. ..+..+++++  .++++...++.
T Consensus       169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~  248 (314)
T 1pjx_A          169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence            244567889999    9997554 44668899999986321111112233344444 6678899975  55666667889


Q ss_pred             EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe--cCC-EEEEecCCCeEEEEeCCc
Q 009373          402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI--GAD-RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~sg~~Dg~i~vW~~~~  468 (536)
                      |.+||..++...                   ..+..+...+.++.+  +++ .+++...++.|..|++..
T Consensus       249 i~~~d~~~g~~~-------------------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          249 IEVFGPDGGQPK-------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEECTTCBSCS-------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEcCCCCcEe-------------------EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999998753211                   111122234455554  555 556666778999999875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.19  E-value=4.3e-13  Score=129.63  Aligned_cols=252  Identities=12%  Similarity=-0.024  Sum_probs=133.9

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      ++..+++++.||.|+.||..+|+.+..+.........+..++..+++++.||.|+.||..+++..             ..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-------------w~   74 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-------------TK   74 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEECTTTCCEEEC-----CCS-------------EE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-------------ee
Confidence            47889999999999999999999988876521111122356778888899999999999877521             11


Q ss_pred             eeCC------ccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCC
Q 009373          249 LWEH------EGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSG  321 (536)
Q Consensus       249 ~~~h------~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~  321 (536)
                      ...+      ..++.   ..++.+++++.|+.|+.||..+|+.+..+..... ...+|++..+++++ ++.|+.||.++|
T Consensus        75 ~~~~~~~~~~~sp~~---~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-~~~~p~~~~v~~~~~dg~v~a~d~~tG  150 (369)
T 2hz6_A           75 LPFTIPELVQASPCR---SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-DSLSPSTSLLYLGRTEYTITMYDTKTR  150 (369)
T ss_dssp             CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSS
T ss_pred             eeccCccccccCceE---ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-ccccccCCEEEEEecCCEEEEEECCCC
Confidence            1111      11111   1456788899999999999999999887763332 22345666777666 899999999999


Q ss_pred             cEEEEEccccccceEEEEEeCCC---CEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE-EEEcCC-eEEE-
Q 009373          322 CLLTVVNGAHVGNTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS-LAFEFP-WLVS-  395 (536)
Q Consensus       322 ~~~~~~~~~~~~~i~~l~~~~~~---~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~-~l~s-  395 (536)
                      +.+..+.. +  ......+.++.   ..+++++.||.|+.||..++      ..+.... ...++.. ..++++ .+.. 
T Consensus       151 ~~~W~~~~-~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG------~~~W~~~-~~~pv~~~~~~~~dg~~~v~  220 (369)
T 2hz6_A          151 ELRWNATY-F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG------DVLWIQN-YASPVVAFYVWQREGLRKVM  220 (369)
T ss_dssp             SCCCEEEE-E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC------CEEEEEE-CSSCEEEEEECTTSSCEEEC
T ss_pred             CEEEeEec-c--cccCccccCCccccceEEEECCCCEEEEEECCCC------cEEEEec-CCCceEEEEEecCCceEecc
Confidence            87766531 1  11223333332   56778889999999999888      3333333 2334433 222321 1110 


Q ss_pred             --EeCCCcEEEEECCccc----ccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373          396 --AAGDGKLSLIDVRKLL----RSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       396 --~s~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                        ...++.++.+|..++.    ..+....+..+             .   ..+    ..+..++.++.||.++.++..
T Consensus       221 ~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~~~-------------~---sp~----~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          221 HINVAVETLRYLTFMSGEVGRITKWKYPFPKET-------------E---AKS----KLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             CEEEEHHHHHHHHHHHHHHHHHHTSCCCCCCHH-------------H---HHH----HSEEEECBEECSSCEECCEEE
T ss_pred             ceeecccceeeeehhcCCcccceeeeeccCccc-------------c---ccc----cccceEEEecccCCEEecCcc
Confidence              0113456667766655    44433222110             0   111    223477778888888888876

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=7.7e-09  Score=108.01  Aligned_cols=190  Identities=14%  Similarity=0.077  Sum_probs=121.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCce-----------EEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..|+.++.++.|..+|..+|+.+..+......           .......+..+++++.|+.|..+|..+++..- ...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W-~~~  148 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAW-SVD  148 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE-EEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEee-eec
Confidence            667788888999999999999998887543210           01122356789999999999999999886321 110


Q ss_pred             CcccccceEEeeCCccCEEEEEEeCCEEEEEe------cCCeEEEEeCCCceEeEeeecc--c-----------------
Q 009373          239 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHS--D-----------------  293 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~--~-----------------  293 (536)
                      .......  .......+    ...++.++.++      .+|.|..||..+++.+..+...  .                 
T Consensus       149 ~~~~~~~--~~~~~~sP----~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          149 TRADHKR--SYTITGAP----RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             CCSCTTS--CCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             CcCCCCC--CccccCCc----EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            0000000  00001112    12345555554      3789999999999998776510  0                 


Q ss_pred             ---------------cEEEEeecCCEEEEec-CC-------------------cEEEEeCCCCcEEEEEccc-cc-----
Q 009373          294 ---------------WVYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGA-HV-----  332 (536)
Q Consensus       294 ---------------~v~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~-~~-----  332 (536)
                                     ...++.+...+++.+. ++                   .|..+|..+|+.+..+... |.     
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~  302 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYT  302 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCC
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccccc
Confidence                           0124446667777776 44                   3999999999998877532 21     


Q ss_pred             --cceEEEEEeCCCC---EEEEEcCCCcEEEEEcccCcc
Q 009373          333 --GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       333 --~~i~~l~~~~~~~---~l~tg~~dg~i~iwd~~~~~~  366 (536)
                        ..+.......+|+   .++.++.+|.++++|..+++.
T Consensus       303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence              1222223333564   788999999999999988853

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.15  E-value=3.4e-09  Score=111.35  Aligned_cols=235  Identities=11%  Similarity=0.017  Sum_probs=145.0

Q ss_pred             CccccEEEEEEecCCCEEEE-----EeCCCcEEEEECCCCceeee-eCCCCceEEEEecCCCEEEEEeCCCc--------
Q 009373          156 GHTEAVLTVFVLASAKLLFT-----SGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAADKKLLVAGGTDGF--------  221 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~s-----gs~dg~v~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~l~sg~~dg~--------  221 (536)
                      +|...+..++|||||++||-     |+.+.+|++||+.+++.+.. +........+++ |++.|+.++.+..        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            46678999999999998883     33346799999999986553 221112334677 9998988887743        


Q ss_pred             -----EEEEEcccCccceecccCcccccceEEeeC-CccCEEEEEE--eCCEEEEEec----CCeEEEEeCCCce-EeEe
Q 009373          222 -----IHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSW----DMTVRVWDRALLK-CLKV  288 (536)
Q Consensus       222 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~----dg~i~iwd~~~~~-~~~~  288 (536)
                           |++|++.++..         ....+..... |...+.++.+  ++++|+....    +..|.++|+.++. ....
T Consensus       205 ~~~~~v~~~~lgt~~~---------~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~  275 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQE---------DDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLT  275 (693)
T ss_dssp             CCCCEEEEEETTSCGG---------GCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred             CCCcEEEEEECCCCcc---------cceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence                 89998866521         0112222223 4445677788  7777654332    3589999997763 2333


Q ss_pred             ee-ccccEEE-EeecCCEEEE-ec-C---CcEEEEeCCCCcE--EEEEccccccceEEEEEeCCCCEEEEEcCCC---cE
Q 009373          289 LR-HSDWVYG-LAPHDTTVAS-TS-G---SDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---AI  356 (536)
Q Consensus       289 ~~-~~~~v~~-~~~~~~~l~~-~~-d---~~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---~i  356 (536)
                      +. +...... +.+++..|+. +. +   +.|..+|+.++..  ...+. .|...+.  .|+++++.|+....++   .|
T Consensus       276 l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l  352 (693)
T 3iuj_A          276 VQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARV  352 (693)
T ss_dssp             EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEE
T ss_pred             EeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEE
Confidence            33 3333333 5666665544 43 3   5699999988754  23443 3544454  8899998877766543   58


Q ss_pred             EEEEcccCccccccceeeec-cCCCCCeEEEEEcC--CeEEEEeCC----CcEEEEECCcc
Q 009373          357 HMYEIINDCTEANVLLVATW-IPHTGPVNSLAFEF--PWLVSAAGD----GKLSLIDVRKL  410 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~d----g~i~vwd~~~~  410 (536)
                      ++||+....       ...+ ....+.+..+.+++  +.|+....+    +.|+.||+.++
T Consensus       353 ~~~d~~g~~-------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          353 EQFDYEGKR-------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEECTTSCE-------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EEEECCCCe-------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            888877541       1222 23345566666653  444433333    78999998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.14  E-value=1.4e-08  Score=98.35  Aligned_cols=274  Identities=12%  Similarity=0.062  Sum_probs=168.8

Q ss_pred             cCCCEEEEEeC-C----CcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCcc
Q 009373          168 ASAKLLFTSGY-D----SIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLP  232 (536)
Q Consensus       168 ~~~~~l~sgs~-d----g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~  232 (536)
                      ++++.++.... +    +.|.++|..+++.+.++.....+-..++|+++.++++.          .++.|.++|..+.+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            45665555544 2    69999999999999888544444677889999888876          467899999987641


Q ss_pred             ceecccCcccccceEEee-C------CccCEEEEEE--eCCEEEEEec--CCeEEEEeCCCceEeEeeeccccEEEEeec
Q 009373          233 HLFDISGSEKQNTQFRLW-E------HEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGLAPH  301 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~-~------h~~~v~~l~~--~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~  301 (536)
                                   ...+. +      .......+.+  ++++++.+..  ++.|.+.|+.+++.+..+.-... ..+.|+
T Consensus       162 -------------v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~  227 (426)
T 3c75_H          162 -------------IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPA  227 (426)
T ss_dssp             -------------EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEE
T ss_pred             -------------EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccC
Confidence                         11111 0      0112234555  7888888764  58999999999999988874332 233443


Q ss_pred             C-CEEEE-ecCCcEEEEeCCCCcEEEEEc---cccccc-eEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee
Q 009373          302 D-TTVAS-TSGSDVYIWDTNSGCLLTVVN---GAHVGN-TKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT  375 (536)
Q Consensus       302 ~-~~l~~-~~d~~i~i~d~~~~~~~~~~~---~~~~~~-i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~  375 (536)
                      + ..+++ +.||++.+.+..+++......   .....+ ...+.+.+++..++..+..+.|.+.|+........ .....
T Consensus       228 g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~-~~~~~  306 (426)
T 3c75_H          228 SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFR-APIEA  306 (426)
T ss_dssp             ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEEC-CCEES
T ss_pred             CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEe-eeeee
Confidence            3 44444 448998888886665543210   001111 12356788988877778889999999865421100 00000


Q ss_pred             cc----C---CCCCeEEEEEcC--CeEEEEeC----------CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373          376 WI----P---HTGPVNSLAFEF--PWLVSAAG----------DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  436 (536)
Q Consensus       376 ~~----~---h~~~v~~l~~~~--~~l~s~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (536)
                      ..    .   .......+++++  +++++...          ++.|.++|..+.+....         +         .-
T Consensus       307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~---------I---------~v  368 (426)
T 3c75_H          307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK---------I---------EL  368 (426)
T ss_dssp             SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE---------E---------EE
T ss_pred             ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE---------E---------EC
Confidence            00    0   011112256654  55555432          35799999988532211         1         11


Q ss_pred             cccccEEEEEecCC-EEEEec-CCCeEEEEeCCchhhHHH
Q 009373          437 GFECNLLSVDIGAD-RIVCGG-EEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       437 ~~~~~v~~~~~~~~-~l~sg~-~Dg~i~vW~~~~~~~~~~  474 (536)
                      +....-..++++++ ++++.. .++.|.++|..+++.+.+
T Consensus       369 g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          369 GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence            22234446667777 777776 699999999999887654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=1.8e-08  Score=95.91  Aligned_cols=237  Identities=12%  Similarity=0.020  Sum_probs=155.3

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeeeCC---------CCceEEEEecCCC
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKK  211 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~---------~~~~v~~~~~~~~  211 (536)
                      +.++..-..+  .++++|||+++++++          .++.|.+||..+++.+.++..         ....-..++|||+
T Consensus        72 ~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk  149 (386)
T 3sjl_D           72 IGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  149 (386)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence            3444433344  399999999887765          367899999999998887632         1234578899999


Q ss_pred             EEEEEeC--CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCC-ceEeE
Q 009373          212 LLVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRAL-LKCLK  287 (536)
Q Consensus       212 ~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~-~~~~~  287 (536)
                      +++++..  ++.|.++|+.+++             ...++.-. + ...+.- ....+++.+.||.+.+.++.+ ++...
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~-------------vv~tI~v~-g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKA-------------FKRMLDVP-D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTE-------------EEEEEECC-S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             EEEEEEcCCCCeEEEEECCCCc-------------EEEEEECC-C-cceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence            9988864  6899999998763             22222211 1 111112 556788889999999999876 55432


Q ss_pred             eee-----ccccEE---EEe-ecCCEEEEecCCcEEEEeCCCCc--EEEEEc---------cccccceEEEEEeCCCCEE
Q 009373          288 VLR-----HSDWVY---GLA-PHDTTVASTSGSDVYIWDTNSGC--LLTVVN---------GAHVGNTKSLARSHTGDFL  347 (536)
Q Consensus       288 ~~~-----~~~~v~---~~~-~~~~~l~~~~d~~i~i~d~~~~~--~~~~~~---------~~~~~~i~~l~~~~~~~~l  347 (536)
                      ...     ....+.   .+. ++|++++.+.++.|++.|+.++.  ....+.         .-..+....++++++++.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~l  294 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  294 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeE
Confidence            211     111221   233 57777777778999999997664  222221         0012334457789999888


Q ss_pred             EEEcC----------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-eEEEEe-CCCcEEEEECCccc
Q 009373          348 FTGGE----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLL  411 (536)
Q Consensus       348 ~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~  411 (536)
                      ++...          .+.|.++|+.+.      +.+..+.. ...+++|++++  + +|+++. .++.|.++|..+++
T Consensus       295 yV~~~~~~~~~hk~~~~~V~viD~~t~------kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          295 YLLVDQRDEWRHKTASRFVVVLDAKTG------ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTC------CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEeccccccccCCCCCEEEEEECCCC------eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            77643          246999999988      44444332 23678899975  3 666654 48999999998853

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.08  E-value=2.8e-07  Score=85.96  Aligned_cols=225  Identities=9%  Similarity=-0.036  Sum_probs=137.1

Q ss_pred             eCccccEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccc
Q 009373          155 YGHTEAVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      ..+..---+..|+|+ +.++++...++.|..||..+++.............++.++++++++ . ++.|.+||..++...
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE
Confidence            334445567889995 5567777788999999998876533222223334455688885544 4 568999998765321


Q ss_pred             eecccCcccccceEEee--CCccCEEEEEE--eCCEEEEEecC---------CeEEEEeCCC-ceEeEeeeccccEEEEe
Q 009373          234 LFDISGSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSWD---------MTVRVWDRAL-LKCLKVLRHSDWVYGLA  299 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~d---------g~i~iwd~~~-~~~~~~~~~~~~v~~~~  299 (536)
                      .           .....  .....+.++++  +++.+++...+         ..-.+|.+.. ++...........+.++
T Consensus        87 ~-----------~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~  155 (297)
T 3g4e_A           87 V-----------LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLD  155 (297)
T ss_dssp             E-----------EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEE
T ss_pred             E-----------EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceE
Confidence            1           11111  11234778888  45544443221         2234444432 33333333333344444


Q ss_pred             --ecCCEEEEe-c-CCcEEEEeC--CCCcEE--EEEc--cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373          300 --PHDTTVAST-S-GSDVYIWDT--NSGCLL--TVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       300 --~~~~~l~~~-~-d~~i~i~d~--~~~~~~--~~~~--~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                        ++++.++.+ + ++.|.+||+  .++...  ..+.  ..+.+.+..++++++|++.++....+.|.+||..++     
T Consensus       156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-----  230 (297)
T 3g4e_A          156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-----  230 (297)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-----
T ss_pred             EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-----
Confidence              788766544 4 688999987  455432  1121  123457889999999998888777888999999877     


Q ss_pred             cceeeeccCCCCCeEEEEEc-C--CeEEEEeC
Q 009373          370 VLLVATWIPHTGPVNSLAFE-F--PWLVSAAG  398 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~-~--~~l~s~s~  398 (536)
                       ..+..+..+...+++++|. |  +.|+.++.
T Consensus       231 -~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          231 -KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             -CEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             -eEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence             4556666666789999997 3  45554443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.08  E-value=1.3e-08  Score=108.00  Aligned_cols=265  Identities=13%  Similarity=0.013  Sum_probs=150.8

Q ss_pred             ecCCCEEEEEeCCCc---EEEEEC--C---CCceeeee------CCCCce--EEEEecCCCEEEEEeCC-----CcEEEE
Q 009373          167 LASAKLLFTSGYDSI---VRMWHL--E---DGFSIASS------KPLGCT--IRAVAADKKLLVAGGTD-----GFIHCW  225 (536)
Q Consensus       167 ~~~~~~l~sgs~dg~---v~iwd~--~---~~~~~~~~------~~~~~~--v~~~~~~~~~l~sg~~d-----g~i~vw  225 (536)
                      +|+|++++....++.   -.+|..  .   .+....-+      .++...  -.+++|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            378887776554432   455544  3   33322211      222222  34667999998887654     459999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCe--------------EEEEeCCCceE--eE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT--------------VRVWDRALLKC--LK  287 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~--------------i~iwd~~~~~~--~~  287 (536)
                      |+.++...              ....+...+..++|  + +.|+.++.|+.              |++|++.++..  ..
T Consensus       195 dl~tg~~~--------------~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l  259 (741)
T 1yr2_A          195 GVADGKPL--------------ADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP  259 (741)
T ss_dssp             ETTTCCEE--------------EEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE
T ss_pred             ECCCCCCC--------------CccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE
Confidence            99887421              11111111246677  6 78887776654              89999987652  22


Q ss_pred             eee---ccccEEEE--eecCCEEEEec-CC-----cEEEEeCCCC--cEEEEEccccccceEEEEEeCCCCEEEEEcCC-
Q 009373          288 VLR---HSDWVYGL--APHDTTVASTS-GS-----DVYIWDTNSG--CLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-  353 (536)
Q Consensus       288 ~~~---~~~~v~~~--~~~~~~l~~~~-d~-----~i~i~d~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-  353 (536)
                      .+.   +...+..+  +++|++++... ++     .|++||+.++  +....+.. +...+... ++|+|+.|+..+.+ 
T Consensus       260 v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~-~~~dg~~l~~~s~~~  337 (741)
T 1yr2_A          260 VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKAQWDF-VDGVGDQLWFVSGDG  337 (741)
T ss_dssp             EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSSCEEE-EEEETTEEEEEECTT
T ss_pred             EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCceEEE-EeccCCEEEEEECCC
Confidence            222   22235554  48998887665 33     7999999887  31344432 33344444 34889888877654 


Q ss_pred             ---CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeC
Q 009373          354 ---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE  429 (536)
Q Consensus       354 ---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  429 (536)
                         +.|.+||+.++.  .  .....+..+...+.+++++. .++++...|+..+||.+...        +...       
T Consensus       338 ~~~~~l~~~d~~~~~--~--~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~--------g~~~-------  398 (741)
T 1yr2_A          338 APLKKIVRVDLSGST--P--RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD--------GKPA-------  398 (741)
T ss_dssp             CTTCEEEEEECSSSS--C--EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT--------SCEE-------
T ss_pred             CCCCEEEEEeCCCCc--c--ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC--------CCce-------
Confidence               459999987641  0  11222234455677778765 46677788988887765421        0000       


Q ss_pred             CCeeeecc-ccccEEEEEe--cCCEEE----EecCCCeEEEEeCCchh
Q 009373          430 PPQRMLHG-FECNLLSVDI--GADRIV----CGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       430 ~~~~~~~~-~~~~v~~~~~--~~~~l~----sg~~Dg~i~vW~~~~~~  470 (536)
                         ..+.. ....+..+++  +++.++    +....++|++||+.+++
T Consensus       399 ---~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          399 ---GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             ---EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ---eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence               11111 1234445554  444343    34456899999998765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.06  E-value=4e-08  Score=102.59  Aligned_cols=239  Identities=11%  Similarity=0.068  Sum_probs=146.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCC--Cc---eEE--EEecCCCEEEEEe------CCCcEEEEEcccCccce-e
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPL--GC---TIR--AVAADKKLLVAGG------TDGFIHCWRAVEVLPHL-F  235 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~---~v~--~~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~-~  235 (536)
                      +..++.++.|+.|..+|..+|+.+..+...  ..   .+.  -+..+ ..+++++      .+|.|..||..+++..- +
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            567888999999999999999988776442  10   110  01123 4455554      37899999999987421 1


Q ss_pred             cccC-ccccc----ce----EEe--------eCCccCEEEEEE--eCCEEEEEecCCe-------------------EEE
Q 009373          236 DISG-SEKQN----TQ----FRL--------WEHEGPITSLAL--DLTRIYSGSWDMT-------------------VRV  277 (536)
Q Consensus       236 ~~~~-~~~~~----~~----~~~--------~~h~~~v~~l~~--~~~~l~s~s~dg~-------------------i~i  277 (536)
                      .... .....    ..    ...        .++......+++  +.+.++.++.++.                   |..
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A  279 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA  279 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            1000 00000    00    000        011111124556  4578888887764                   999


Q ss_pred             EeCCCceEeEeee---ccc-------cE--EEEeecCC---EEEEec-CCcEEEEeCCCCcEEEEEcccccc--------
Q 009373          278 WDRALLKCLKVLR---HSD-------WV--YGLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVG--------  333 (536)
Q Consensus       278 wd~~~~~~~~~~~---~~~-------~v--~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--------  333 (536)
                      +|..+++.+..++   +..       ..  ..+..+++   .++.++ +|.++++|..+|+.+.........        
T Consensus       280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            9999999998876   211       11  12224554   666666 899999999999987544321100        


Q ss_pred             ------------------------------ceEEEEEeCCCCEEEEEcC-------------------------------
Q 009373          334 ------------------------------NTKSLARSHTGDFLFTGGE-------------------------------  352 (536)
Q Consensus       334 ------------------------------~i~~l~~~~~~~~l~tg~~-------------------------------  352 (536)
                                                    .-..++++|+..+++++..                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                                          0112678888888777632                               


Q ss_pred             --------------CCcEEEEEcccCccccccceeeeccCCCCCeE-EEEEcCCeEEEEeCCCcEEEEECCcccccCC
Q 009373          353 --------------DGAIHMYEIINDCTEANVLLVATWIPHTGPVN-SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGR  415 (536)
Q Consensus       353 --------------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  415 (536)
                                    +|.|+.||+.++      +.+-....+..... .+.-.+..+++++.||.|+.||.++++..++
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG------~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQ------QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE  511 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTT------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CcccccCCCCCCCcceeEEEEECCCC------CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence                          377999999888      33333332221111 3334568999999999999999999766554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.05  E-value=6.7e-08  Score=100.72  Aligned_cols=240  Identities=12%  Similarity=0.129  Sum_probs=149.0

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCC-C----ceEE-EEecCCCEEEEEeC------CCcEEEEEcccCcccee-
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPL-G----CTIR-AVAADKKLLVAGGT------DGFIHCWRAVEVLPHLF-  235 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~----~~v~-~~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~-  235 (536)
                      .+..|+.++.|+.|..+|..+|+.+..+... .    ..+. .-...+..+++++.      +|.|+.+|..+++..-. 
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            3668888999999999999999998877544 1    1111 11123456666654      79999999998863211 


Q ss_pred             cccCcccc------------------cceEEeeCCccCEEEEEE--eCCEEEEEecCC-------------------eEE
Q 009373          236 DISGSEKQ------------------NTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-------------------TVR  276 (536)
Q Consensus       236 ~~~~~~~~------------------~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------------------~i~  276 (536)
                      ........                  .......+.......+++  +++.++.++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            11000000                  000000011111224455  567788777664                   599


Q ss_pred             EEeCCCceEeEeee---cc--------cc-EEEEeecC---CEEEEec-CCcEEEEeCCCCcEEEEEcccccc-------
Q 009373          277 VWDRALLKCLKVLR---HS--------DW-VYGLAPHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVG-------  333 (536)
Q Consensus       277 iwd~~~~~~~~~~~---~~--------~~-v~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-------  333 (536)
                      .+|..+++.+..++   +.        .+ +.....+|   ..++.++ +|.++++|..+|+.+..+......       
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            99999999988876   21        11 12222466   5677776 899999999999998776422110       


Q ss_pred             ---ce------------------------EEEEEeCCCCEEEEEcCC---------------------------------
Q 009373          334 ---NT------------------------KSLARSHTGDFLFTGGED---------------------------------  353 (536)
Q Consensus       334 ---~i------------------------~~l~~~~~~~~l~tg~~d---------------------------------  353 (536)
                         .+                        ..++++|++.++++...+                                 
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence               11                        146889988888776432                                 


Q ss_pred             ----------CcEEEEEcccCccccccceeeeccCCCCCeEE--EEEcCCeEEEEeCCCcEEEEECCcccccCC
Q 009373          354 ----------GAIHMYEIINDCTEANVLLVATWIPHTGPVNS--LAFEFPWLVSAAGDGKLSLIDVRKLLRSGR  415 (536)
Q Consensus       354 ----------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~--l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  415 (536)
                                |.|..||+.+++      .+.... +..++.+  +...+..++.++.||.+++||.++++..+.
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~------~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~  513 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQK------AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE  513 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTE------EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccCCCCCccEEEEEeCCCCc------EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence                      779999998883      333322 2222332  333567899999999999999998755543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.05  E-value=6.3e-07  Score=84.71  Aligned_cols=216  Identities=13%  Similarity=0.021  Sum_probs=130.8

Q ss_pred             cEEEEEEecC-CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          160 AVLTVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       160 ~V~~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      -..+..|+|+ +.+++++..++.|..||..+++..............+.++++++++. .+ .|.+||..++....+   
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~---  124 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH---  124 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE---
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE---
Confidence            4567889997 55667777789999999988764332222222233445788766654 44 499999876642111   


Q ss_pred             CcccccceEEee--CCccCEEEEEE--eCCEEEEEec------CCeEEEEeCCCceEeEeeeccccEEEE--eecCCEEE
Q 009373          239 GSEKQNTQFRLW--EHEGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA  306 (536)
Q Consensus       239 ~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~  306 (536)
                              ....  .....+.++++  +++.+++...      .+.|..+|  +++.............+  +++++.++
T Consensus       125 --------~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          125 --------AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             --------ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEE
T ss_pred             --------eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEE
Confidence                    0000  11235778888  4555544332      24566666  45543333332334444  47887665


Q ss_pred             Ee-c-CCcEEEEeCC--CC-cE-----EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373          307 ST-S-GSDVYIWDTN--SG-CL-----LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       307 ~~-~-d~~i~i~d~~--~~-~~-----~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                      .+ . ++.|.+||+.  ++ ..     ...+. .....+..++++++|.+.++...++.|.+||. ++      ..+..+
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g------~~~~~i  266 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG------NHIARY  266 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC------CEEEEE
T ss_pred             EEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC------CEEEEE
Confidence            44 3 6889999986  55 31     22221 23456788999999988777767788999997 34      234445


Q ss_pred             cCCCCCeEEEEEc-C--CeEEEEeC
Q 009373          377 IPHTGPVNSLAFE-F--PWLVSAAG  398 (536)
Q Consensus       377 ~~h~~~v~~l~~~-~--~~l~s~s~  398 (536)
                      ..+...+++++|+ +  +.|+.++.
T Consensus       267 ~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          267 EVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ECCCCCcEEEEEecCCCCEEEEEec
Confidence            5566679999997 4  45555444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.01  E-value=8.8e-09  Score=97.72  Aligned_cols=263  Identities=11%  Similarity=0.009  Sum_probs=157.8

Q ss_pred             CccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      .+...+.++...+++. |+.++.+  |..+|. +++.+..+.............+..++.++.++.+..+|.. +.    
T Consensus        57 ~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~----  127 (330)
T 3hxj_A           57 SGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GT----  127 (330)
T ss_dssp             GGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SC----
T ss_pred             cCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CC----
Confidence            3445567777766665 4455555  888886 6665554433222111111226778889999999999976 42    


Q ss_pred             cccCcccccceEEeeCCccCEEEEEEe-CCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEecCC
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGS  311 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~  311 (536)
                               .......+...+.++..+ .+.++.++.++.|..+|.. ++....+. ....+.++.  .++.+++++  +
T Consensus       128 ---------~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~  195 (330)
T 3hxj_A          128 ---------EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--D  195 (330)
T ss_dssp             ---------EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--S
T ss_pred             ---------EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--C
Confidence                     122222233344555564 5668888889999999998 77766665 333344443  456655555  8


Q ss_pred             cEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-C
Q 009373          312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-F  390 (536)
Q Consensus       312 ~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~  390 (536)
                      .+..+| .+++....+.. ....+.++...++|. |..++.++.+..+|. ++      ..+..+......+.++..+ .
T Consensus       196 ~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g------~~~~~~~~~~~~~~~~~~~~~  265 (330)
T 3hxj_A          196 KVYAIN-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG------TEKWRFKTGKRIESSPVIGNT  265 (330)
T ss_dssp             SEEEEC-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TS------CEEEEEECSSCCCSCCEECTT
T ss_pred             EEEEEC-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECC-CC------CEeEEeeCCCCccccceEcCC
Confidence            999999 77777766642 445677888888776 555667788888874 33      2223333333334455666 5


Q ss_pred             CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe-cCCEEEEecCCCeEEEEeCCch
Q 009373          391 PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-GADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       391 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      ..|..++.+|.|..+|. ++.....                   .......+.++.. .+..|..|+.+|.+++...+..
T Consensus       266 g~l~v~t~~ggl~~~d~-~g~~~~~-------------------~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~  325 (330)
T 3hxj_A          266 DTIYFGSYDGHLYAINP-DGTEKWN-------------------FETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH  325 (330)
T ss_dssp             SCEEEECTTCEEEEECT-TSCEEEE-------------------EECSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred             CeEEEecCCCCEEEECC-CCcEEEE-------------------EEcCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence            78889999999999985 3321111                   0001122233334 2336777899999999877643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.99  E-value=2.3e-07  Score=86.82  Aligned_cols=228  Identities=14%  Similarity=0.109  Sum_probs=138.3

Q ss_pred             cceeeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeee--CCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      ..+..+..+........|+|+++ +++++..++.|..|+. +++. ..+  ......-.++.++|+++++...++.|.+|
T Consensus        35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence            35666777777788999999998 6778888899999998 4442 223  22223344556888876666666889999


Q ss_pred             EcccCccceecccCcccccceEEeeC-CccCEEEEEE--eCCEEEE----Eec-------------CCeEEEEeCCCceE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYS----GSW-------------DMTVRVWDRALLKC  285 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s----~s~-------------dg~i~iwd~~~~~~  285 (536)
                      +.. +....+          .....+ ....+.++++  ++...++    |..             .+.|..+|..+++.
T Consensus       113 ~~~-g~~~~~----------~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~  181 (305)
T 3dr2_A          113 DAD-GQAHLL----------VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL  181 (305)
T ss_dssp             CTT-SCEEEE----------ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC
T ss_pred             CCC-CCEEEE----------EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE
Confidence            875 321100          000011 1123556777  5566665    332             25688888766655


Q ss_pred             eEeeeccccEE--EEeecCCEEEEec-C------CcEEEEeCCCCcEE--EEEccccccceEEEEEeCCCCEEEEEcCCC
Q 009373          286 LKVLRHSDWVY--GLAPHDTTVASTS-G------SDVYIWDTNSGCLL--TVVNGAHVGNTKSLARSHTGDFLFTGGEDG  354 (536)
Q Consensus       286 ~~~~~~~~~v~--~~~~~~~~l~~~~-d------~~i~i~d~~~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg  354 (536)
                      .... ......  +++++++.++.+. .      +.|.+||+..+...  ..+.....+.+..++++++|++ .+++.+|
T Consensus       182 ~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g  259 (305)
T 3dr2_A          182 QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG  259 (305)
T ss_dssp             EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE
T ss_pred             EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc
Confidence            4333 223333  4458888666654 4      67999998765411  1121112344567889999994 4444454


Q ss_pred             cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCC
Q 009373          355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDG  400 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg  400 (536)
                       |.+|+....       .+..+..+. .+.+++|++  +.|+.++.++
T Consensus       260 -v~~~~~~g~-------~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          260 -VCVFDSDGQ-------LLGHIPTPG-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             -EEEECTTSC-------EEEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred             -EEEECCCCC-------EEEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence             999997432       333443333 578899964  5787777764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.97  E-value=4e-07  Score=92.74  Aligned_cols=185  Identities=12%  Similarity=0.053  Sum_probs=116.4

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCceeeeeCCCCce-----------EEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          170 AKLLFTSGY-DSIVRMWHL-EDGFSIASSKPLGCT-----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       170 ~~~l~sgs~-dg~v~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      +..++.++. ++.|.-+|. .+|+.+..+......           .......+..+++++.|+.+..+|..+++..-. 
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~-  140 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE-  140 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE-
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEE-
Confidence            556666777 899999999 999998876543210           011223567888999999999999988863211 


Q ss_pred             ccCcccccceEEeeCCc--cCEE-EEEEeCCEEEEEec------CCeEEEEeCCCceEeEeeecccc-------------
Q 009373          237 ISGSEKQNTQFRLWEHE--GPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDW-------------  294 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~--~~v~-~l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~-------------  294 (536)
                                .....+.  ..+. +-...++.++.++.      ++.|..+|..+++.+..+.....             
T Consensus       141 ----------~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~  210 (571)
T 2ad6_A          141 ----------VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA  210 (571)
T ss_dssp             ----------EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             ----------ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccc
Confidence                      0111110  0111 11123566666665      79999999999999887762211             


Q ss_pred             ----------------------------EEEEeecCCEEEEec-C----------------CcEEEEeCCCCcEEEEEcc
Q 009373          295 ----------------------------VYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       295 ----------------------------v~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~~~~~~~  329 (536)
                                                  ..++.+....++.+. +                +.|..+|..+|+.+-.+..
T Consensus       211 ~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~  290 (571)
T 2ad6_A          211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK  290 (571)
T ss_dssp             CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred             cccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecC
Confidence                                        123344445555444 2                2599999999999887753


Q ss_pred             cc-c-------cceEEEEEeCCCC---EEEEEcCCCcEEEEEcccCc
Q 009373          330 AH-V-------GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       330 ~~-~-------~~i~~l~~~~~~~---~l~tg~~dg~i~iwd~~~~~  365 (536)
                      .+ .       ....-+...++|+   .++.++.+|.++++|..+++
T Consensus       291 ~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  337 (571)
T 2ad6_A          291 TPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             STTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             CCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence            22 1       1111222334674   67788999999999998874

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.94  E-value=1.2e-08  Score=96.69  Aligned_cols=255  Identities=12%  Similarity=0.030  Sum_probs=154.1

Q ss_pred             EEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecC-CCEEEEEeCCCcEEEEEcccCccceecccCcccc
Q 009373          165 FVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ  243 (536)
Q Consensus       165 ~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~  243 (536)
                      ....++ .++.++.++.|..|| .+++.+.........+.++..+ +..++.++.+  +..+|. ++.. ..        
T Consensus        26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~-~~--------   91 (330)
T 3hxj_A           26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTE-KW--------   91 (330)
T ss_dssp             EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGG-GG--------
T ss_pred             eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcE-EE--------
Confidence            344444 466677889999999 8888776655444444555433 4566666665  888875 3321 10        


Q ss_pred             cceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEecCCcEEEEeCCC
Q 009373          244 NTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTSGSDVYIWDTNS  320 (536)
Q Consensus       244 ~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~  320 (536)
                          .+...........+.++.++.++.++.|..+|.. ++...... ....+.++.  .++.+++++.++.+..+|.. 
T Consensus        92 ----~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-  165 (330)
T 3hxj_A           92 ----RFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-  165 (330)
T ss_dssp             ----GSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-
T ss_pred             ----EEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-
Confidence                0111111122223347788889999999999998 77666655 222333333  46666665557999999999 


Q ss_pred             CcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCC-eEEEEeCC
Q 009373          321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGD  399 (536)
Q Consensus       321 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~s~d  399 (536)
                      ++....+.. ....+.++...+++.+ ..++  +.|..+| .++      ............+.++..+++ .|..++.+
T Consensus       166 g~~~~~~~~-~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g------~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~  234 (330)
T 3hxj_A          166 GTEKWRFKT-NDAITSAASIGKDGTI-YFGS--DKVYAIN-PDG------TEKWNFYAGYWTVTRPAISEDGTIYVTSLD  234 (330)
T ss_dssp             SCEEEEEEC-SSCCCSCCEECTTCCE-EEES--SSEEEEC-TTS------CEEEEECCSSCCCSCCEECTTSCEEEEETT
T ss_pred             CCEeEEEec-CCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCC------cEEEEEccCCcceeceEECCCCeEEEEcCC
Confidence            877766642 3445667777777774 4455  7799999 555      233334444566788888764 88889888


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec-CCEEEEecCCCeEEEEeCCchhh
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG-ADRIVCGGEEGIVRIWNFSQAFE  471 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~sg~~Dg~i~vW~~~~~~~  471 (536)
                      +.|..+|... ...+..            ..       ......++..+ +..|..++.+|.|..+|. +++.
T Consensus       235 ~gl~~~~~~g-~~~~~~------------~~-------~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~  286 (330)
T 3hxj_A          235 GHLYAINPDG-TEKWRF------------KT-------GKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTE  286 (330)
T ss_dssp             TEEEEECTTS-CEEEEE------------EC-------SSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCE
T ss_pred             CeEEEECCCC-CEeEEe------------eC-------CCCccccceEcCCCeEEEecCCCCEEEECC-CCcE
Confidence            8899887432 111110            00       00001112223 346777888888999985 4443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.93  E-value=1.4e-06  Score=81.10  Aligned_cols=185  Identities=10%  Similarity=0.051  Sum_probs=115.8

Q ss_pred             EEecC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCC
Q 009373          205 AVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA  281 (536)
Q Consensus       205 ~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~  281 (536)
                      .+.++ +.++++...++.|..||..++..              . .......+.++++  +++ ++.+. ++.|.+||..
T Consensus        19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~-~~~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~   81 (297)
T 3g4e_A           19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV--------------Q-RVTMDAPVSSVALRQSGG-YVATI-GTKFCALNWK   81 (297)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCE--------------E-EEECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETT
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCcE--------------E-EEeCCCceEEEEECCCCC-EEEEE-CCeEEEEECC
Confidence            34554 45667777789999999876531              1 1223467889998  555 44454 6789999998


Q ss_pred             CceEeEeeec-----cccEEEEe--ecCCEEEEec-C-----------CcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373          282 LLKCLKVLRH-----SDWVYGLA--PHDTTVASTS-G-----------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  342 (536)
Q Consensus       282 ~~~~~~~~~~-----~~~v~~~~--~~~~~l~~~~-d-----------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~  342 (536)
                      +++.......     ...+..+.  ++|+++++.. .           +.|..+|.. ++.....  ......+.++|+|
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~--~~~~~pngi~~sp  158 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYF--DQVDISNGLDWSL  158 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEE--EEESBEEEEEECT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEe--eccccccceEEcC
Confidence            8775443331     12355554  7888777653 1           234444543 3333222  2445678999999


Q ss_pred             CCCEE-EEEcCCCcEEEEEcc--cCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcc
Q 009373          343 TGDFL-FTGGEDGAIHMYEII--NDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       343 ~~~~l-~tg~~dg~i~iwd~~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +++.| ++.+.++.|.+|++.  ++.. .....+..+..+.+.+..+++++  .+.++...++.|.+||..++
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~-~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG  230 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQI-SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG  230 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCE-EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcc-cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence            99866 556667899999974  3321 11122333444456778999975  45555566788999998763

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.93  E-value=1.7e-10  Score=111.40  Aligned_cols=184  Identities=11%  Similarity=0.062  Sum_probs=102.2

Q ss_pred             EeCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEE--eecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEE
Q 009373          261 LDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS  337 (536)
Q Consensus       261 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~  337 (536)
                      .+++.+++++.||.|+.||..+++.+..+.. ..+.+.  ..++..+++++ |+.|+.||..+|+.+..+.......+.+
T Consensus         7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            4688999999999999999999999988775 444332  25666777655 8999999999998776654211111111


Q ss_pred             -EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCC
Q 009373          338 -LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP  416 (536)
Q Consensus       338 -l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  416 (536)
                       ..+. .+..+++|+.|+.|+.||..+++      .+..+..+.. +. ..-.+..+++++.|+.|+.||.+++...+..
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~------~~w~~~~~~~-~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGE------KQQTLSSAFA-DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNA  156 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCc------EEEEecCCCc-cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeE
Confidence             1111 34567888889999999999883      3433333321 11 1114578999999999999999987544432


Q ss_pred             CCCCceeeEEeeCCCeeeeccccccEEEEEec---CCEEEEecCCCeEEEEeCCchhhHH
Q 009373          417 TSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG---ADRIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      ..                 ......  .+..+   ...++.++.||.|+.||..+|+.+.
T Consensus       157 ~~-----------------~~~~~~--~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W  197 (369)
T 2hz6_A          157 TY-----------------FDYAAS--LPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW  197 (369)
T ss_dssp             EE-----------------EEECCB--CCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred             ec-----------------ccccCc--cccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence            10                 000000  11111   1456778889999999998887654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.92  E-value=4.6e-10  Score=99.59  Aligned_cols=49  Identities=24%  Similarity=0.381  Sum_probs=46.0

Q ss_pred             cccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhH
Q 009373           63 TITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCER  111 (536)
Q Consensus        63 ~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~  111 (536)
                      +|..||.|++++||+||+|+||+++++|||.||.++.|+.||+.++.+.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhcc
Confidence            5789999999999999999999999999999999999999999977653

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.92  E-value=1e-09  Score=99.05  Aligned_cols=81  Identities=17%  Similarity=0.271  Sum_probs=62.7

Q ss_pred             cccCCcHHHHHHHhcCCChhhHH-HHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhh
Q 009373           63 TITDLPPALISEILNCLDPKELG-IVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFR  141 (536)
Q Consensus        63 ~l~~Lp~ei~~~I~~~L~~~~l~-~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~  141 (536)
                      .+..||+|++.+||++|++++|+ +|++|||+|+.|++++.+|+..+... ++.....    .......||..|..+.+.
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~-g~~~~~~----~~~~~~~Wk~~y~~~~~g  124 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE-GLVPEGS----ADEERDHWQQFYFLSKRR  124 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT-TCCCC---------CCSCHHHHHHHHHHC
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc-Ccccccc----cCCCCCChhhhheheecc
Confidence            47899999999999999999999 99999999999999999999965554 3321111    112355699999988776


Q ss_pred             ccccCCc
Q 009373          142 SKTFLGR  148 (536)
Q Consensus       142 ~~~~~~~  148 (536)
                      .+.+.+.
T Consensus       125 RNLL~NP  131 (297)
T 2e31_A          125 RNLLRNP  131 (297)
T ss_dssp             CCCSSCS
T ss_pred             cceeecC
Confidence            6666544

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.92  E-value=1.3e-06  Score=78.67  Aligned_cols=192  Identities=13%  Similarity=-0.015  Sum_probs=132.3

Q ss_pred             cEEEEEEecCCCEEEEEeC--CCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEEEE-eCCCcEEEEEcccCcccee
Q 009373          160 AVLTVFVLASAKLLFTSGY--DSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~  235 (536)
                      ....+.|++++.++++.+.  ++.|+++|+.+++.+..+.... .....+..+++.|+.+ -.++.+.++|..+.+    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~----   97 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS----   97 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE----
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc----
Confidence            3578999998765555543  6899999999999988764222 1223455456555554 457899999987653    


Q ss_pred             cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeecc---c---cEEEEe-ecCCEEEEe
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHS---D---WVYGLA-PHDTTVAST  308 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~---~v~~~~-~~~~~l~~~  308 (536)
                               ...++.-....-..++.+++.++.+..++.|.++|..+.+....+.-.   .   .++.+. .++..++..
T Consensus        98 ---------v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~  168 (266)
T 2iwa_A           98 ---------NIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI  168 (266)
T ss_dssp             ---------EEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             ---------EEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence                     222232111222457778888877778899999999999888887621   1   244554 355444444


Q ss_pred             c-CCcEEEEeCCCCcEEEEEccc-c-----------ccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccC
Q 009373          309 S-GSDVYIWDTNSGCLLTVVNGA-H-----------VGNTKSLARSHTGD-FLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       309 ~-d~~i~i~d~~~~~~~~~~~~~-~-----------~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~  364 (536)
                      . ++.|.+.|+.+++.+..+..+ .           ....+.++++|+++ +++++...+.+.+.++...
T Consensus       169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            4 689999999999999888632 1           13568999999986 5566667888999988765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.91  E-value=2.5e-07  Score=96.26  Aligned_cols=189  Identities=14%  Similarity=0.030  Sum_probs=120.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCce-----------EEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-----------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..|+.++.++.|.-+|..+|+.+..+......           .......+..+++++.|+.|..+|..+++..- ...
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W-~~~  144 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIW-SQQ  144 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEE-EEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEee-eec
Confidence            567777888999999999999998887543210           01122346788899999999999999886321 110


Q ss_pred             CcccccceEEeeCCccCEEEEEEeCCEEEEEec------CCeEEEEeCCCceEeEeeecc--cc----------------
Q 009373          239 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHS--DW----------------  294 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~--~~----------------  294 (536)
                      ..... .  .......+    ...++.++.+..      +|.|..+|..+++.+..+...  .+                
T Consensus       145 ~~~~~-~--~~~~~~~P----~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  217 (668)
T 1kv9_A          145 TTDPA-K--PYSITGAP----RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTW  217 (668)
T ss_dssp             CSCTT-S--SCBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTC
T ss_pred             cCCCC-C--cceecCCC----EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccC
Confidence            00000 0  00001112    123556666543      589999999999998877521  00                


Q ss_pred             ----------------EEEEeecCCEEEEec-CC-------------------cEEEEeCCCCcEEEEEccc-cc-----
Q 009373          295 ----------------VYGLAPHDTTVASTS-GS-------------------DVYIWDTNSGCLLTVVNGA-HV-----  332 (536)
Q Consensus       295 ----------------v~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~-~~-----  332 (536)
                                      ..++.+....++.+. ++                   .|..+|..+|+.+..+... |.     
T Consensus       218 ~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~  297 (668)
T 1kv9_A          218 QGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (668)
T ss_dssp             CSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             CccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccccc
Confidence                            123445666776665 44                   3999999999998887643 22     


Q ss_pred             --cceEEEEEeCCCC---EEEEEcCCCcEEEEEcccCcc
Q 009373          333 --GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       333 --~~i~~l~~~~~~~---~l~tg~~dg~i~iwd~~~~~~  366 (536)
                        .+.....+..+|+   .++.++.+|.++++|..+++.
T Consensus       298 ~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          298 ATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence              2233333334665   688999999999999988853

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.88  E-value=2.6e-07  Score=89.60  Aligned_cols=237  Identities=10%  Similarity=-0.010  Sum_probs=152.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeeeCC---------CCceEEEEecCCC
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKK  211 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~---------~~~~v~~~~~~~~  211 (536)
                      +.++..-..+  .++++||+++|+.+.          .++.|.++|..+++.+.++.-         ....-..+++|++
T Consensus       112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk  189 (426)
T 3c75_H          112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK  189 (426)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred             EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            3444433344  799999999888776          467999999999998877632         1223457889999


Q ss_pred             EEEEEeC--CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373          212 LLVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       212 ~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      +++++..  ++.|.+.|+.+.+             ....+.-. + ...+.. ....+++.+.||.+.+.+..+++....
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~k-------------vv~~I~v~-g-~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~  254 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKT-------------FDRMLDVP-D-CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT  254 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTE-------------EEEEEECC-S-EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred             EEEEEecCCCCeEEEEECCCCe-------------EEEEEEcC-C-ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence            9999874  5889999997753             22222211 1 112222 346677788899988888866655432


Q ss_pred             ----ee-ccccE---EEEeecCCEEEEec-CCcEEEEeCCCCcEEE--EEcc---------ccccceEEEEEeCCCCEEE
Q 009373          289 ----LR-HSDWV---YGLAPHDTTVASTS-GSDVYIWDTNSGCLLT--VVNG---------AHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       289 ----~~-~~~~v---~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~--~~~~---------~~~~~i~~l~~~~~~~~l~  348 (536)
                          +. ...++   ..+.+++..++..+ .+.+.+.|...+....  .+..         ........++++|+++.++
T Consensus       255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly  334 (426)
T 3c75_H          255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY  334 (426)
T ss_dssp             ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred             eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence                21 11111   13356666555444 7889999987654221  1100         0111222368999998777


Q ss_pred             EEcC----------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-eEEEEe-CCCcEEEEECCccc
Q 009373          349 TGGE----------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAA-GDGKLSLIDVRKLL  411 (536)
Q Consensus       349 tg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s-~dg~i~vwd~~~~~  411 (536)
                      +...          ++.|.++|..+.      +.+.++.. .....+++|++  + +++++. .++.|.|+|+.+.+
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~T~------kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAETG------ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTC------CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEecccccccccCCCCEEEEEECCCC------eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            6542          357999999988      44444432 22478899975  5 788887 58999999999853

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.87  E-value=3.2e-07  Score=89.57  Aligned_cols=185  Identities=11%  Similarity=0.030  Sum_probs=114.6

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC--eEEEE
Q 009373          203 IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM--TVRVW  278 (536)
Q Consensus       203 v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg--~i~iw  278 (536)
                      -+++.++++++++...++.|++||..++..             ...... ..... +++  +++.|+++..++  .|.++
T Consensus       135 ~la~d~~g~lyv~d~~~~~I~~id~~~g~~-------------~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~  199 (409)
T 3hrp_A          135 GIAAVGNNTVLAYQRDDPRVRLISVDDNKV-------------TTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVY  199 (409)
T ss_dssp             EEEECSTTEEEEEETTTTEEEEEETTTTEE-------------EEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEE
T ss_pred             EEEEeCCCCEEEEecCCCcEEEEECCCCEE-------------EEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEE
Confidence            345568888777777789999999876531             111111 12222 666  667888888766  79999


Q ss_pred             eCCCceEeEee----e-ccccEEEE--ee-cCCEEEEecCCcEEEEeCCCCcEEEEE---ccccccce-E-EEEEeCC-C
Q 009373          279 DRALLKCLKVL----R-HSDWVYGL--AP-HDTTVASTSGSDVYIWDTNSGCLLTVV---NGAHVGNT-K-SLARSHT-G  344 (536)
Q Consensus       279 d~~~~~~~~~~----~-~~~~v~~~--~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~i-~-~l~~~~~-~  344 (536)
                      +...+.....+    . ....+.++  .+ ++.++++..++.|+.||..++.....-   ..++...- . .++|+|+ +
T Consensus       200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g  279 (409)
T 3hrp_A          200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS  279 (409)
T ss_dssp             EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred             EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC
Confidence            88765543333    1 22333444  46 455555333788999999887643320   11222222 3 9999995 6


Q ss_pred             CEEEEEcCCCcEEEEEcccCccccccceeeeccCC---------------CCCeEEEEEcC--CeEEEEe-CCCcEEEEE
Q 009373          345 DFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH---------------TGPVNSLAFEF--PWLVSAA-GDGKLSLID  406 (536)
Q Consensus       345 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~--~~l~s~s-~dg~i~vwd  406 (536)
                      .++++...++.|+.|+....        +..+.++               -.....+++++  .++++-+ .++.|+.||
T Consensus       280 ~lyv~d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          280 NFYMSDQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EEEEEETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             EEEEEeCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            66667677889999987543        1111111               23578999986  5555555 688999999


Q ss_pred             CCcc
Q 009373          407 VRKL  410 (536)
Q Consensus       407 ~~~~  410 (536)
                      +.++
T Consensus       352 ~~~G  355 (409)
T 3hrp_A          352 ILDG  355 (409)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.87  E-value=2.1e-06  Score=87.43  Aligned_cols=186  Identities=10%  Similarity=0.021  Sum_probs=118.5

Q ss_pred             CCEEEEEeC-CCcEEEEEC-CCCceeeeeCCCCce-------------EEEEecCCCE----EEEEeCCCcEEEEEcccC
Q 009373          170 AKLLFTSGY-DSIVRMWHL-EDGFSIASSKPLGCT-------------IRAVAADKKL----LVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       170 ~~~l~sgs~-dg~v~iwd~-~~~~~~~~~~~~~~~-------------v~~~~~~~~~----l~sg~~dg~i~vwd~~~~  230 (536)
                      +..|+.++. ++.|.-+|. .+|+.+..+......             -.++.|.+..    ++.++.|+.+..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            556777777 899999999 999998877543210             1133234555    888999999999999888


Q ss_pred             ccceecccCcccccceEEeeCCc--cCEE-EEEEeCCEEEEEe------cCCeEEEEeCCCceEeEeeecccc-------
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHE--GPIT-SLALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHSDW-------  294 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~--~~v~-~l~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~-------  294 (536)
                      +..-. .          ....+.  ..+. .-.+.++.++.++      .+|.|+.+|..+++.+..+.....       
T Consensus       142 ~~~W~-~----------~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~  210 (599)
T 1w6s_A          142 ETVWK-V----------ENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA  210 (599)
T ss_dssp             CEEEE-E----------ECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred             CEEEe-e----------cCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence            63211 0          010100  0111 1112345666665      389999999999999887762211       


Q ss_pred             ----------------------------------EEEEeecCCEEEEec-C----------------CcEEEEeCCCCcE
Q 009373          295 ----------------------------------VYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCL  323 (536)
Q Consensus       295 ----------------------------------v~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~  323 (536)
                                                        ..++.+...+++.+. +                +.|..+|..+|+.
T Consensus       211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~  290 (599)
T 1w6s_A          211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA  290 (599)
T ss_dssp             TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE
T ss_pred             cccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce
Confidence                                              123445556666655 4                3799999999999


Q ss_pred             EEEEcccccc--------ceEEEEEe-CCC---CEEEEEcCCCcEEEEEcccCcc
Q 009373          324 LTVVNGAHVG--------NTKSLARS-HTG---DFLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       324 ~~~~~~~~~~--------~i~~l~~~-~~~---~~l~tg~~dg~i~iwd~~~~~~  366 (536)
                      +-.+...+..        ...-+... .+|   ..++.++.+|.++++|..+++.
T Consensus       291 ~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  345 (599)
T 1w6s_A          291 KFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL  345 (599)
T ss_dssp             EEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred             eeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence            8877643321        11112222 467   5678899999999999988843

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.83  E-value=8.1e-07  Score=83.13  Aligned_cols=182  Identities=14%  Similarity=0.109  Sum_probs=112.8

Q ss_pred             EEEecCCC-EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeC
Q 009373          204 RAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       204 ~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~  280 (536)
                      ..+.++++ +++++..++.|..|+. ++.              ...+..+...+..+++  +++.+++...++.|..||.
T Consensus        50 p~~~~~g~~l~~~d~~~~~i~~~~~-~g~--------------~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           50 PAWWEAQRTLVWSDLVGRRVLGWRE-DGT--------------VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEEEET-TSC--------------EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             CeEeCCCCEEEEEECCCCEEEEEeC-CCC--------------EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            34567887 6777778899999986 331              2233345667888998  4554444445688999998


Q ss_pred             CCceEeEeeec-----cccEEEE--eecCCEEEE----ec--------------CCcEEEEeCCCCcEEEEEccccccce
Q 009373          281 ALLKCLKVLRH-----SDWVYGL--APHDTTVAS----TS--------------GSDVYIWDTNSGCLLTVVNGAHVGNT  335 (536)
Q Consensus       281 ~~~~~~~~~~~-----~~~v~~~--~~~~~~l~~----~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~i  335 (536)
                      . ++.......     ...+..+  .++|+++++    +.              .+.|..+|..+++.....   .....
T Consensus       115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p  190 (305)
T 3dr2_A          115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHP  190 (305)
T ss_dssp             T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSE
T ss_pred             C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCC
Confidence            6 553322221     1123333  488888886    22              245888888777654332   33456


Q ss_pred             EEEEEeCCCCEEEEEcCC------CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECC
Q 009373          336 KSLARSHTGDFLFTGGED------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       336 ~~l~~~~~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~  408 (536)
                      +.++|+|+++.|+.+...      +.|.+|++.... .........  ...+....+++++ ..|.+++.+| |.+|+..
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~--~~~~~pdgi~~d~~G~lwv~~~~g-v~~~~~~  266 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS--VPDGLPDGFCVDRGGWLWSSSGTG-VCVFDSD  266 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC--CSSSCCCSEEECTTSCEEECCSSE-EEEECTT
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE--CCCCCCCeEEECCCCCEEEecCCc-EEEECCC
Confidence            789999999977777665      789999987652 111111111  1234456778875 3466666554 9999874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.82  E-value=1.2e-06  Score=77.76  Aligned_cols=177  Identities=13%  Similarity=0.138  Sum_probs=122.4

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEE-eCCCcEEEEEcccCccceecccC
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      ...+.|+ ++.++++.+.+|.|+++|+++++.+..+-+...-...+.++++.|+.. -.++.+.+||..+.+        
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~--------  127 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ--------  127 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE--------
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc--------
Confidence            4678887 467777888889999999999998877611111123355555555444 467899999987753        


Q ss_pred             cccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeec---cc---cEEEEe-ecCCEEEEec-CC
Q 009373          240 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH---SD---WVYGLA-PHDTTVASTS-GS  311 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~---~v~~~~-~~~~~l~~~~-d~  311 (536)
                           .+.++.- ...-..++++++.|+.+..++.|.++|..+.+.+..+.-   ..   .++.+. .+|++++... ++
T Consensus       128 -----~~~ti~~-~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~  201 (268)
T 3nok_A          128 -----RERTTRY-SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSS  201 (268)
T ss_dssp             -----EEEEEEC-SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCS
T ss_pred             -----EEEEEeC-CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCC
Confidence                 2223322 122256678898888888899999999999998888762   22   334455 4666555554 68


Q ss_pred             cEEEEeCCCCcEEEEEccc------------cccceEEEEEeCCCCEEEEEcC
Q 009373          312 DVYIWDTNSGCLLTVVNGA------------HVGNTKSLARSHTGDFLFTGGE  352 (536)
Q Consensus       312 ~i~i~d~~~~~~~~~~~~~------------~~~~i~~l~~~~~~~~l~tg~~  352 (536)
                      .|.+.|..+++.+..+..+            ...-.+.|+++|+++.|++.+.
T Consensus       202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            9999999999999888532            1135789999998765555443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.79  E-value=2.8e-06  Score=75.39  Aligned_cols=183  Identities=13%  Similarity=0.107  Sum_probs=126.4

Q ss_pred             Ccccc--EEEEEEecCCCEEEEEeCCC--cEEEEECCCCceeeeeCCCCce-EEEEecCCCEEEEEe-CCCcEEEEEccc
Q 009373          156 GHTEA--VLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPLGCT-IRAVAADKKLLVAGG-TDGFIHCWRAVE  229 (536)
Q Consensus       156 ~h~~~--V~~v~~~~~~~~l~sgs~dg--~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l~sg~-~dg~i~vwd~~~  229 (536)
                      .|...  ...+.|+ ++.++.+++.+|  .|+++|+++++.+..+...... -..+.++++.|+... .++.+.++|..+
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t  116 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN  116 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECcc
Confidence            45443  4788888 677777777766  8999999999998877543322 233555566666554 578999999877


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeec---ccc---EEEEe-ecC
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH---SDW---VYGLA-PHD  302 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~---v~~~~-~~~  302 (536)
                      .+             ...++.-. ..=..++++++.|+.+..++.|.++|..+.+....+.-   ..+   ++.+. .+|
T Consensus       117 ~~-------------~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G  182 (262)
T 3nol_A          117 LR-------------QVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDG  182 (262)
T ss_dssp             CC-------------EEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETT
T ss_pred             Cc-------------EEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECC
Confidence            53             23333221 12246667888888777788999999999998888762   222   33344 456


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccc-c----------ccceEEEEEeCCCCEEEEEcCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGA-H----------VGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~----------~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      ++++... ++.|.+.|..+++.+..+... -          ....+.++++|+++.|++.+..
T Consensus       183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          183 EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            5555554 789999999999998888531 0          1356899999998877766654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.79  E-value=1.7e-05  Score=74.74  Aligned_cols=183  Identities=11%  Similarity=-0.032  Sum_probs=112.4

Q ss_pred             EEecC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCC
Q 009373          205 AVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRAL  282 (536)
Q Consensus       205 ~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~  282 (536)
                      .++++ +.+++++..++.|..||..++..              ..+ .....+.++++ ..+.++.++. ..|.+||..+
T Consensus        55 ~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~-~~~~~v~~i~~~~dg~l~v~~~-~gl~~~d~~~  118 (326)
T 2ghs_A           55 TFDPASGTAWWFNILERELHELHLASGRK--------------TVH-ALPFMGSALAKISDSKQLIASD-DGLFLRDTAT  118 (326)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEE-ECSSCEEEEEEEETTEEEEEET-TEEEEEETTT
T ss_pred             eEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEE-ECCCcceEEEEeCCCeEEEEEC-CCEEEEECCC
Confidence            45665 45666777789999999876521              111 12457888888 3334444554 4599999988


Q ss_pred             ceEeEeeec-----cccEEEEe--ecCCEEEEecC-------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE
Q 009373          283 LKCLKVLRH-----SDWVYGLA--PHDTTVASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       283 ~~~~~~~~~-----~~~v~~~~--~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      ++.......     ...+..+.  ++|+++++..+       +.|..+|  +++... +. ........++|+|+++.++
T Consensus       119 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~-~~~~~~~~i~~s~dg~~ly  194 (326)
T 2ghs_A          119 GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LF-ADISIPNSICFSPDGTTGY  194 (326)
T ss_dssp             CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EE-EEESSEEEEEECTTSCEEE
T ss_pred             CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-ee-CCCcccCCeEEcCCCCEEE
Confidence            775433221     13455655  78887776542       4566666  454333 32 2344678999999998665


Q ss_pred             -EEcCCCcEEEEEcc--cC-ccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          349 -TGGEDGAIHMYEII--ND-CTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       349 -tg~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                       +.+.++.|.+||+.  ++ .. .....+..+......+.++++++  .+.++...++.|.+||..
T Consensus       195 v~~~~~~~I~~~d~~~~~Gl~~-~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          195 FVDTKVNRLMRVPLDARTGLPT-GKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEETTTCEEEEEEBCTTTCCBS-SCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             EEECCCCEEEEEEcccccCCcc-cCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence             44567899999986  33 21 11122333333445678888875  455555566889999873

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.79  E-value=2.8e-06  Score=76.37  Aligned_cols=187  Identities=15%  Similarity=0.053  Sum_probs=128.7

Q ss_pred             EEEecCCCEEEEEeC--CCcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEEeCCEEEEEe-cCCeEEEEe
Q 009373          204 RAVAADKKLLVAGGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDLTRIYSGS-WDMTVRVWD  279 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s-~dg~i~iwd  279 (536)
                      +.+++++.++++.+.  ++.|.++|+.+++.             ...+. +.......++++++.|+.+. .++.+.++|
T Consensus        26 l~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-------------~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD   92 (266)
T 2iwa_A           26 LVYAENDTLFESTGLYGRSSVRQVALQTGKV-------------ENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYD   92 (266)
T ss_dssp             EEECSTTEEEEEECSTTTCEEEEEETTTCCE-------------EEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEE
T ss_pred             EEEeCCCeEEEECCCCCCCEEEEEECCCCCE-------------EEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEE
Confidence            455666544444433  58999999988742             22221 11223345777777666555 578999999


Q ss_pred             CCCceEeEeeecc-ccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccc----cceEEEEEeCCCCEEEEEcCC
Q 009373          280 RALLKCLKVLRHS-DWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       280 ~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      ..+.+.+.++... ..-..++++++.++.+. ++.|.++|..+.+.+..+.-+..    ..++.+.|. +|...+....+
T Consensus        93 ~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~  171 (266)
T 2iwa_A           93 RRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQT  171 (266)
T ss_dssp             TTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             CCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCC
Confidence            9999999988754 44466888877666665 78999999999998888763321    236788888 67666666678


Q ss_pred             CcEEEEEcccCccccccceeeeccC-------------CCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcc
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIP-------------HTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~  410 (536)
                      +.|.+.|..++..      +..+.-             .....+.|+|++   .+++++...+++.+.++...
T Consensus       172 ~~V~vID~~tg~V------~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          172 DCIARISAKDGTL------LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             SEEEEEETTTCCE------EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CeEEEEECCCCcE------EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            8999999999843      222221             124668999986   36667777899999998764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.78  E-value=2.7e-07  Score=87.94  Aligned_cols=223  Identities=9%  Similarity=-0.056  Sum_probs=138.5

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeeeCC---------CCceEEEEecCCC
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKP---------LGCTIRAVAADKK  211 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~---------~~~~v~~~~~~~~  211 (536)
                      +.++..-..+  .+.++||+++++.+.          .+++|.+||+.+++.+.++..         ....-..++|||+
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk  136 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            4445433345  799999999888886          378999999999999988742         2344578899999


Q ss_pred             EEEEEeC--CCcEEE--EEcccCccceecccC----------------cccccceEEeeC------------------Cc
Q 009373          212 LLVAGGT--DGFIHC--WRAVEVLPHLFDISG----------------SEKQNTQFRLWE------------------HE  253 (536)
Q Consensus       212 ~l~sg~~--dg~i~v--wd~~~~~~~~~~~~~----------------~~~~~~~~~~~~------------------h~  253 (536)
                      +++++..  +..+.+  +|..+ . ......+                .........+..                  ..
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~t-v-~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~  214 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASD-D-QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS  214 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEE-E-EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred             EEEEEccCCCCeEEEEEEchhh-c-eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence            9998875  467888  88865 1 1110000                000000000000                  01


Q ss_pred             cCEEEEEEeCCEEEEEecCCeEEEEeCCCce--EeEeee-------------ccccEEEEeecCCEEEEe-c-C------
Q 009373          254 GPITSLALDLTRIYSGSWDMTVRVWDRALLK--CLKVLR-------------HSDWVYGLAPHDTTVAST-S-G------  310 (536)
Q Consensus       254 ~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~-------------~~~~v~~~~~~~~~l~~~-~-d------  310 (536)
                      .+. . ..+++.++..+. +.|.+.|..+..  .+..+.             .......+.++++.++.+ . .      
T Consensus       215 ~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~  291 (368)
T 1mda_H          215 QAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLA  291 (368)
T ss_dssp             CCE-E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTS
T ss_pred             Ccc-c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccc
Confidence            111 1 114445555555 888888886432  222221             111224677888777654 2 2      


Q ss_pred             --CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEEEEc-CCCcEEEEEcccCccccccceeeeccCCCCCeEEE
Q 009373          311 --SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLFTGG-EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSL  386 (536)
Q Consensus       311 --~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l  386 (536)
                        +.+.++|+.+++.+..+..  ......++|+|+|+ ++++.. .++.|.++|+.+.      +.+.++.... ....+
T Consensus       292 ~~~~~~ViD~~t~~vv~~i~v--g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~------kvv~~I~vg~-~P~~i  362 (368)
T 1mda_H          292 AAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD------QDQSSVELDK-GPESL  362 (368)
T ss_dssp             CEEEEEEEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC------EEEEECCCCS-CCCEE
T ss_pred             cCCCEEEEECCCCeEEEEEEC--CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC------cEEEEEECCC-CCCEE
Confidence              3577999999999988863  33688999999997 566666 5999999999998      5566655433 23455


Q ss_pred             EEc
Q 009373          387 AFE  389 (536)
Q Consensus       387 ~~~  389 (536)
                      ++.
T Consensus       363 ~~~  365 (368)
T 1mda_H          363 SVQ  365 (368)
T ss_dssp             ECC
T ss_pred             Eee
Confidence            543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.76  E-value=4.2e-06  Score=85.33  Aligned_cols=189  Identities=10%  Similarity=-0.047  Sum_probs=112.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCce---------EEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT---------IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS  240 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~  240 (536)
                      +..++.++.++.|.-+|..+|+.+..+......         .......+..++.++.|+.|..+|..+++..-......
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~  147 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFAD  147 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCC
Confidence            445555665445999999999988776433211         01112346788889999999999999886321100000


Q ss_pred             ccccceEEeeCCccCEEEEEEeC----C-EEEEEe------cCCeEEEEeCCCceEeEeeecccc---------------
Q 009373          241 EKQNTQFRLWEHEGPITSLALDL----T-RIYSGS------WDMTVRVWDRALLKCLKVLRHSDW---------------  294 (536)
Q Consensus       241 ~~~~~~~~~~~h~~~v~~l~~~~----~-~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~---------------  294 (536)
                      ...    .......++.   .++    + .+++++      .++.|..+|..+++.+........               
T Consensus       148 ~~~----~~~~~~sP~v---~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          148 HGA----GYTMTGAPTI---VKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             GGG----TCBCCSCCEE---EECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred             CCc----CcccccCCEE---eCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence            000    0000112221   222    2 566665      379999999999998876542110               


Q ss_pred             -----------------------------EEEEeecCCEEEEec---------------------C----CcEEEEeCCC
Q 009373          295 -----------------------------VYGLAPHDTTVASTS---------------------G----SDVYIWDTNS  320 (536)
Q Consensus       295 -----------------------------v~~~~~~~~~l~~~~---------------------d----~~i~i~d~~~  320 (536)
                                                   ..++.+...+++.+.                     |    +.|..+|..+
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence                                         012334445555433                     1    5799999999


Q ss_pred             CcEEEEEccc-ccc-------ceEEEEEe-CCCC---EEEEEcCCCcEEEEEcccCc
Q 009373          321 GCLLTVVNGA-HVG-------NTKSLARS-HTGD---FLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       321 ~~~~~~~~~~-~~~-------~i~~l~~~-~~~~---~l~tg~~dg~i~iwd~~~~~  365 (536)
                      |+.+-.+... |..       ...-+... .+|+   .++.++.+|.++++|..+++
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  357 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK  357 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence            9998887532 221       11112222 4674   78889999999999998874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.75  E-value=8.9e-07  Score=84.35  Aligned_cols=227  Identities=8%  Similarity=0.025  Sum_probs=130.0

Q ss_pred             ccEEEEEEecCCCEEEEEeC--CCcEEEEECCCCceeeeeC-------CCCceEEEEe--cCCCEEEEEeC-----CCcE
Q 009373          159 EAVLTVFVLASAKLLFTSGY--DSIVRMWHLEDGFSIASSK-------PLGCTIRAVA--ADKKLLVAGGT-----DGFI  222 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~--dg~v~iwd~~~~~~~~~~~-------~~~~~v~~~~--~~~~~l~sg~~-----dg~i  222 (536)
                      ..+..++++|+|+++++...  ++.++||.+.+++. ..+.       .+-..+..+.  ++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            78899999999999988642  34356666555543 3221       1233455554  66665555433     5789


Q ss_pred             EEEEcccCcc-ceecccCcccccceEEeeCCccCEEEEEEe--CCEE-EEEe---cCCeEEEEeCCCceEeEeee-cccc
Q 009373          223 HCWRAVEVLP-HLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRI-YSGS---WDMTVRVWDRALLKCLKVLR-HSDW  294 (536)
Q Consensus       223 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s---~dg~i~iwd~~~~~~~~~~~-~~~~  294 (536)
                      .+||+.++.. ..+.+...        ...+...+..++++  ++.+ ++.+   .++.|.+||+.+++....+. |...
T Consensus        96 ~~~d~~tg~~~~~~~~~~~--------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~  167 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPP--------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGI  167 (343)
T ss_dssp             EEEETTTTEEEEEEECCTT--------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTT
T ss_pred             EEEECCCCeEEEEEECChh--------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcc
Confidence            9999877641 11111000        01223456788885  3454 4444   67899999999887766553 1111


Q ss_pred             E---EEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-cEEEEEcccCcc--c
Q 009373          295 V---YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-AIHMYEIINDCT--E  367 (536)
Q Consensus       295 v---~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-~i~iwd~~~~~~--~  367 (536)
                      .   ..+.+++..+.... ++.+..|.               ..+..++++|+|+.|+++..++ .+..++......  .
T Consensus       168 ~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          168 APEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL  232 (343)
T ss_dssp             SCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred             cccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence            0   22334555554444 55554432               2357899999999888887766 444444321100  0


Q ss_pred             cccceee--eccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          368 ANVLLVA--TWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       368 ~~~~~~~--~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      .......  ...++.+....+++++  .++++...++.|.+||..+
T Consensus       233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~  278 (343)
T 2qe8_A          233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSAD  278 (343)
T ss_dssp             CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTT
T ss_pred             ChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCC
Confidence            0000000  1113444567788875  5677777789999999843

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.67  E-value=9.2e-05  Score=79.05  Aligned_cols=241  Identities=8%  Similarity=0.027  Sum_probs=149.0

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-------CCceEEEEecC-CCEEEEEeCCCcEEEEEcc
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAAD-KKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~  228 (536)
                      +...|.++...+++.+.+ |+.++-+..||..+++.......       ....|.++..+ ...|..|+.+ -|.+|+..
T Consensus       213 ~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~  290 (795)
T 4a2l_A          213 GTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEG  290 (795)
T ss_dssp             -CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred             CCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCC
Confidence            346788888887776555 55444488999887654433221       13567777743 3456666666 58888876


Q ss_pred             cCccceecccCcccccceEEeeCCccCEEEEEEe-CCEEEEEecCCeEEEEeCCCceEeEeee-------ccccEEEEe-
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVLR-------HSDWVYGLA-  299 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~-  299 (536)
                      ++....+.......      ..-....|.++..| .+.|..|+.++-|..|+..+........       ....|.++. 
T Consensus       291 ~~~~~~~~~~~~~~------~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~  364 (795)
T 4a2l_A          291 TDSFASYSSNPVEN------GSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVE  364 (795)
T ss_dssp             TTEEEEECCCTTST------TSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEE
T ss_pred             CCeEEEEecCCCCC------CCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEE
Confidence            54321111000000      00123579999884 4568888888889999876554322111       234688887 


Q ss_pred             -ecCCEEEEecCCcEEEEeCCCCcEEEEEcc-------ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccc
Q 009373          300 -PHDTTVASTSGSDVYIWDTNSGCLLTVVNG-------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       300 -~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~  371 (536)
                       .++.+.+++.++.|..||..+++.......       -....|.++...++|..|..|+.++-|..||..++..    .
T Consensus       365 d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~----~  440 (795)
T 4a2l_A          365 DKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV----E  440 (795)
T ss_dssp             CTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE----E
T ss_pred             CCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE----E
Confidence             456666655577899999987764433211       1235789999988888567777777799999877621    1


Q ss_pred             eeee--ccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcc
Q 009373          372 LVAT--WIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       372 ~~~~--~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ....  -..+...|.++..++ ..|..|+.+ -|.+||..+.
T Consensus       441 ~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~-Gl~~~~~~~~  481 (795)
T 4a2l_A          441 NFNQRNSQLVNENVYAILPDGEGNLWLGTLS-ALVRFNPEQR  481 (795)
T ss_dssp             EECTTTSCCSCSCEEEEEECSSSCEEEEESS-CEEEEETTTT
T ss_pred             EeecCCCCcCCCeeEEEEECCCCCEEEEecC-ceeEEeCCCC
Confidence            1110  002346789998875 567777764 5888997753

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.67  E-value=2e-06  Score=81.83  Aligned_cols=217  Identities=7%  Similarity=-0.029  Sum_probs=126.8

Q ss_pred             EEEEEeCCC----cEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------CCCcEEEEEcccCccceecc
Q 009373          172 LLFTSGYDS----IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       172 ~l~sgs~dg----~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~i~vwd~~~~~~~~~~~  237 (536)
                      .+++...++    +|.+.|..+++.+.++.....+-..++|+++.++++.          .++.|.+||+.+++      
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~------  107 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL------  107 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC------
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC------
Confidence            344444444    8889999999999988554445678889999998886          47889999998864      


Q ss_pred             cCcccccceEEeeCC-------ccCEEEEEE--eCCEEEEEec--CCeEEE--EeCCCceEeEeeeccccEEEEeecC--
Q 009373          238 SGSEKQNTQFRLWEH-------EGPITSLAL--DLTRIYSGSW--DMTVRV--WDRALLKCLKVLRHSDWVYGLAPHD--  302 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h-------~~~v~~l~~--~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~--  302 (536)
                             ....+.-+       ......+++  ++++++++..  +..|.+  +|..+   +..+...+. ..+.+++  
T Consensus       108 -------vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-~~~~p~g~~  176 (368)
T 1mda_H          108 -------PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-FHIHPGAAA  176 (368)
T ss_dssp             -------EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-CCCEEEETT
T ss_pred             -------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-eEEccCCCe
Confidence                   22222111       011234455  6777777764  356777  88765   222221110 0011111  


Q ss_pred             -----------------------------------------------CEEEEecCCcEEEEeCCCCc--EEEEEccc---
Q 009373          303 -----------------------------------------------TTVASTSGSDVYIWDTNSGC--LLTVVNGA---  330 (536)
Q Consensus       303 -----------------------------------------------~~l~~~~d~~i~i~d~~~~~--~~~~~~~~---  330 (536)
                                                                     .++++.. +.+.+.|+.++.  .+..+...   
T Consensus       177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~  255 (368)
T 1mda_H          177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG  255 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH
T ss_pred             EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc
Confidence                                                           1122222 445555554321  11111100   


Q ss_pred             ------cccceEEEEEeCCCCEEEEEcC---------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-e
Q 009373          331 ------HVGNTKSLARSHTGDFLFTGGE---------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-W  392 (536)
Q Consensus       331 ------~~~~i~~l~~~~~~~~l~tg~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~  392 (536)
                            .......++++|+++.++++..         ++.+.++|+.+.      +.+..+.... ...+++|++  . .
T Consensus       256 ~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~------~vv~~i~vg~-~p~gi~~s~Dg~~l  328 (368)
T 1mda_H          256 RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG------QTSGPISNGH-DSDAIIAAQDGASD  328 (368)
T ss_dssp             HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC------CEEECCEEEE-EECEEEECCSSSCE
T ss_pred             ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC------eEEEEEECCC-CcceEEECCCCCEE
Confidence                  0111122679999998876543         235669999988      4455444322 578899976  3 5


Q ss_pred             EEEEe-CCCcEEEEECCccccc
Q 009373          393 LVSAA-GDGKLSLIDVRKLLRS  413 (536)
Q Consensus       393 l~s~s-~dg~i~vwd~~~~~~~  413 (536)
                      +++.. .++.|.++|+.+.+..
T Consensus       329 ~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             EEEEETTTTEEEEEESSSCEEE
T ss_pred             EEEccCCCCeEEEEECCCCcEE
Confidence            66666 5999999999986444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.66  E-value=1.9e-05  Score=69.45  Aligned_cols=183  Identities=18%  Similarity=0.135  Sum_probs=124.2

Q ss_pred             Cccc--cEEEEEEecCCCEEEEEeCC--CcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEEEE-EeCCCcEEEEEccc
Q 009373          156 GHTE--AVLTVFVLASAKLLFTSGYD--SIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVA-GGTDGFIHCWRAVE  229 (536)
Q Consensus       156 ~h~~--~V~~v~~~~~~~~l~sgs~d--g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~s-g~~dg~i~vwd~~~  229 (536)
                      .|..  -...+.|++ +.++.+.+.+  ..|+.+|+++++.+........ --..+.+.++.|+. .-.++.+.+||..+
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCc
Confidence            5654  356888986 6666676665  4899999999999887743322 11234444554444 45689999999877


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeeec---c---ccEEEEe-ecC
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRH---S---DWVYGLA-PHD  302 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~---~~v~~~~-~~~  302 (536)
                      .+             ...++.-. ..=..++.+++.|+.+..++.|.++|..+.+.+..+.-   .   ..++.+. .++
T Consensus        95 l~-------------~~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G  160 (243)
T 3mbr_X           95 LT-------------PRARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNG  160 (243)
T ss_dssp             TE-------------EEEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred             Cc-------------EEEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCC
Confidence            53             23333221 12246677888777777799999999999998888762   1   2344555 456


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccc------------cccceEEEEEeCCCCEEEEEcCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGA------------HVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~------------~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      +.++..- +..|.+.|..+++.+..+..+            ...-.+.++++|+++.|++.+.-
T Consensus       161 ~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          161 ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            5555554 689999999999999887522            12356899999988766665543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.66  E-value=1e-06  Score=92.56  Aligned_cols=186  Identities=16%  Similarity=0.159  Sum_probs=110.2

Q ss_pred             EEEecCCCEEEE-----EeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCe---
Q 009373          204 RAVAADKKLLVA-----GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMT---  274 (536)
Q Consensus       204 ~~~~~~~~~l~s-----g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~---  274 (536)
                      .+++|||++|+-     |+...+|++||+.++...            ...+.+..  ...++| |++.|+.++.+..   
T Consensus       134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~------------~~~~~~~k--~~~~~WsDg~~l~y~~~~~~~~~  199 (693)
T 3iuj_A          134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL------------ETPLKDVK--FSGISWLGNEGFFYSSYDKPDGS  199 (693)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE------------EEEEEEEE--SCCCEEETTTEEEEEESSCCC--
T ss_pred             EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC------------ccccCCce--eccEEEeCCCEEEEEEecCcccc
Confidence            367799998884     333467999999887411            11111110  123345 7888888887743   


Q ss_pred             ----------EEEEeCCCceE--eEeeec----cccEEEE--eecCCEEEEec--C---CcEEEEeCCCCc-EEEEEccc
Q 009373          275 ----------VRVWDRALLKC--LKVLRH----SDWVYGL--APHDTTVASTS--G---SDVYIWDTNSGC-LLTVVNGA  330 (536)
Q Consensus       275 ----------i~iwd~~~~~~--~~~~~~----~~~v~~~--~~~~~~l~~~~--d---~~i~i~d~~~~~-~~~~~~~~  330 (536)
                                |++|++.++..  ...+..    ......+  ++++++++...  +   +.|+++|+.++. ....+. .
T Consensus       200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~  278 (693)
T 3iuj_A          200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-G  278 (693)
T ss_dssp             -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-C
T ss_pred             cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-C
Confidence                      99999987643  222322    2234444  48999876543  2   479999998763 334443 2


Q ss_pred             cccceEEEEEeCCCCEEE-EEcCC---CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeC-CC--cEE
Q 009373          331 HVGNTKSLARSHTGDFLF-TGGED---GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG-DG--KLS  403 (536)
Q Consensus       331 ~~~~i~~l~~~~~~~~l~-tg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-dg--~i~  403 (536)
                      +....... ++++|..|+ ....+   +.|..+|+.++..    .....+..|...+..+...+++|+.... ++  .|+
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~~~l~  353 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----AHWRDLIPERQQVLTVHSGSGYLFAEYMVDATARVE  353 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCEEEEEETTEEEEEEEETTEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----cccEEEecCCCCEEEEEEECCEEEEEEEECCeeEEE
Confidence            44444444 566666554 44433   5788899877631    1123445555544455555677766655 44  688


Q ss_pred             EEECCc
Q 009373          404 LIDVRK  409 (536)
Q Consensus       404 vwd~~~  409 (536)
                      +||+..
T Consensus       354 ~~d~~g  359 (693)
T 3iuj_A          354 QFDYEG  359 (693)
T ss_dssp             EECTTS
T ss_pred             EEECCC
Confidence            888764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.65  E-value=1.3e-05  Score=71.20  Aligned_cols=175  Identities=11%  Similarity=0.020  Sum_probs=117.0

Q ss_pred             CCCEEEEEeCCC--cEEEEEcccCccceecccCcccccceEEeeCCc-cCEEEEEEeCCEEEEEe-cCCeEEEEeCCCce
Q 009373          209 DKKLLVAGGTDG--FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-GPITSLALDLTRIYSGS-WDMTVRVWDRALLK  284 (536)
Q Consensus       209 ~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~l~s~s-~dg~i~iwd~~~~~  284 (536)
                      ++.++.+.+.+|  .|+++|+.+++.             ...+.-.. -.-..++.+++.|+... .++.+.+||..+.+
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv-------------~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKT-------------LQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCE-------------EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcE-------------EEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence            555666666666  899999988752             22221111 12244677777776665 58899999999999


Q ss_pred             EeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcccc---c-cceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          285 CLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH---V-GNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       285 ~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~---~-~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      .+.++.....-..+++++..|+.+. ++.|.++|..+.+.+..+.-+.   . ..++.+.+. +|...+....++.|.+.
T Consensus       119 ~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vI  197 (262)
T 3nol_A          119 QVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRI  197 (262)
T ss_dssp             EEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred             EEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEE
Confidence            9999985555467778887777666 6789999999999888875321   1 345567776 67766666678899999


Q ss_pred             EcccCccccccceeeecc-------CCCCCeEEEEEcC--CeEEEEeC
Q 009373          360 EIINDCTEANVLLVATWI-------PHTGPVNSLAFEF--PWLVSAAG  398 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~--~~l~s~s~  398 (536)
                      |..++.....+.. ..+.       .-....+.|+|+|  +.|+..+.
T Consensus       198 Dp~tG~V~~~Id~-~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          198 DPETGKVTGIIDL-NGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             CTTTCBEEEEEEC-TTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ECCCCcEEEEEEC-CcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            9999843221111 0011       1134679999987  45555554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.63  E-value=1.3e-05  Score=81.71  Aligned_cols=237  Identities=15%  Similarity=0.088  Sum_probs=137.1

Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeCCCCc----eEEE-EecCCCEEEEEe------CCCcEEEEEcccCccce-ecccCc
Q 009373          173 LFTSGYDSIVRMWHLEDGFSIASSKPLGC----TIRA-VAADKKLLVAGG------TDGFIHCWRAVEVLPHL-FDISGS  240 (536)
Q Consensus       173 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~l~sg~------~dg~i~vwd~~~~~~~~-~~~~~~  240 (536)
                      |+.++.|+.|..+|..+|+.+........    .+.+ -...+..+++++      .+|.|+.+|..+++..- +.....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~  203 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP  203 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence            88888999999999999998876533210    1110 001234566655      38999999999886421 111100


Q ss_pred             cccc----------ce-------------EEeeCCccCE-EEEEE--eCCEEEEEecC----------------CeEEEE
Q 009373          241 EKQN----------TQ-------------FRLWEHEGPI-TSLAL--DLTRIYSGSWD----------------MTVRVW  278 (536)
Q Consensus       241 ~~~~----------~~-------------~~~~~h~~~v-~~l~~--~~~~l~s~s~d----------------g~i~iw  278 (536)
                      ....          ..             ..+..-.+.+ ..+++  ..+.++.++.+                +.|..+
T Consensus       204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al  283 (599)
T 1w6s_A          204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR  283 (599)
T ss_dssp             HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence            0000          00             0000000111 12233  45677776655                389999


Q ss_pred             eCCCceEeEeee---ccc--------cEE-EEe-ecC---CEEEEec-CCcEEEEeCCCCcEEEEEcccc----------
Q 009373          279 DRALLKCLKVLR---HSD--------WVY-GLA-PHD---TTVASTS-GSDVYIWDTNSGCLLTVVNGAH----------  331 (536)
Q Consensus       279 d~~~~~~~~~~~---~~~--------~v~-~~~-~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~----------  331 (536)
                      |..+++.+..++   |..        ++. .+. .++   ..++.++ +|.+.++|..+|+.+.......          
T Consensus       284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~  363 (599)
T 1w6s_A          284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL  363 (599)
T ss_dssp             ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred             eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence            999999998877   211        122 222 356   4566565 8999999999999887654211          


Q ss_pred             -c-cce--------------------------EEEEEeCCCCEEEEEc--------------------------------
Q 009373          332 -V-GNT--------------------------KSLARSHTGDFLFTGG--------------------------------  351 (536)
Q Consensus       332 -~-~~i--------------------------~~l~~~~~~~~l~tg~--------------------------------  351 (536)
                       . .++                          ..++++|+..++++..                                
T Consensus       364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~  443 (599)
T 1w6s_A          364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK  443 (599)
T ss_dssp             TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred             CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence             0 011                          2356777666655432                                


Q ss_pred             -------CCCcEEEEEcccCccccccceeeeccCCCCCeE--EEEEcCCeEEEEeCCCcEEEEECCcccccCCC
Q 009373          352 -------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP  416 (536)
Q Consensus       352 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  416 (536)
                             .+|.+.-||+.+++      .+-.... ..++.  .+...+..++.++.||.++.||.++++..++.
T Consensus       444 ~~~~~~~~~G~l~A~D~~tG~------~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~  510 (599)
T 1w6s_A          444 GDRQNYEGLGQIKAYNAITGD------YKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF  510 (599)
T ss_dssp             SBTTTTBCCEEEEEECTTTCC------EEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCcccCCCcCeEEEEECCCCC------EEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence                   34677778877773      2222210 11111  24445688889999999999999997665543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.61  E-value=9.3e-06  Score=84.49  Aligned_cols=240  Identities=13%  Similarity=0.078  Sum_probs=143.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCC----ceEEE-EecCCCEEEEEeC------CCcEEEEEcccCcccee-cc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG----CTIRA-VAADKKLLVAGGT------DGFIHCWRAVEVLPHLF-DI  237 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~-~~  237 (536)
                      +..++.++.|+.|..+|..+|+.+..+....    ..+.+ -...+..++++..      +|.|..+|..+++..-. ..
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence            5678888999999999999999887764421    01100 0012445666543      58999999998864211 11


Q ss_pred             cC-ccccc----------------ceEEeeCCccCEEEEEE--eCCEEEEEecCC-------------------eEEEEe
Q 009373          238 SG-SEKQN----------------TQFRLWEHEGPITSLAL--DLTRIYSGSWDM-------------------TVRVWD  279 (536)
Q Consensus       238 ~~-~~~~~----------------~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-------------------~i~iwd  279 (536)
                      .. .....                ......++......+++  +.+.++.++.++                   .|..+|
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD  276 (668)
T 1kv9_A          197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (668)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence            00 00000                00000011111223556  357888887766                   499999


Q ss_pred             CCCceEeEeeec---c-------ccEE--EEeecCC---EEEEec-CCcEEEEeCCCCcEEEEEccccc-----------
Q 009373          280 RALLKCLKVLRH---S-------DWVY--GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHV-----------  332 (536)
Q Consensus       280 ~~~~~~~~~~~~---~-------~~v~--~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-----------  332 (536)
                      ..+++.+..++.   .       .+..  .+..+++   .++.++ +|.++++|..+|+.+........           
T Consensus       277 ~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g  356 (668)
T 1kv9_A          277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (668)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence            999999988762   1       1111  2334665   566666 89999999999998854431110           


Q ss_pred             cce------------------------EEEEEeCCCCEEEEE------------------------------------cC
Q 009373          333 GNT------------------------KSLARSHTGDFLFTG------------------------------------GE  352 (536)
Q Consensus       333 ~~i------------------------~~l~~~~~~~~l~tg------------------------------------~~  352 (536)
                      .++                        ..++++|+..++++.                                    ..
T Consensus       357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~  436 (668)
T 1kv9_A          357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (668)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence            000                        125777776665542                                    13


Q ss_pred             CCcEEEEEcccCccccccceeeeccCCCCC-eEEEEEcCCeEEEEeCCCcEEEEECCcccccCC
Q 009373          353 DGAIHMYEIINDCTEANVLLVATWIPHTGP-VNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGR  415 (536)
Q Consensus       353 dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  415 (536)
                      +|.|..||+.+++      .+-....+... -..+...+.++++++.||.|++||.++++..+.
T Consensus       437 ~g~l~A~D~~tG~------~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~  494 (668)
T 1kv9_A          437 SGALLAWDPVKQK------AAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (668)
T ss_dssp             EEEEEEEETTTTE------EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cceEEEEeCCCCc------EEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheE
Confidence            4789999998883      33222222111 123445678999999999999999998755543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.60  E-value=5.7e-05  Score=80.67  Aligned_cols=277  Identities=13%  Similarity=0.097  Sum_probs=164.7

Q ss_pred             EEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ce-EEEEec-CCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373          161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CT-IRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~-v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  237 (536)
                      |.++...++|.+.+. +. +-+..||..+++......... .. +.++.. ....|..|+.++.+..|+..++....+  
T Consensus       133 i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~--  208 (795)
T 4a2l_A          133 VNGIEEISPEQLLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKV--  208 (795)
T ss_dssp             CCEEEEEETTEEEEE-ET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEEC--
T ss_pred             EEEEEECCCCCEEEE-EC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEe--
Confidence            888888888776654 44 458899987764432211111 12 555542 234566677765688898765431110  


Q ss_pred             cCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee--------ccccEEEEe--ecCCEEE
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGLA--PHDTTVA  306 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~--~~~~~l~  306 (536)
                                ....+...|.++.. ..+.+..|+.++-+..||..+++......        ....|.++.  .++.+.+
T Consensus       209 ----------~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi  278 (795)
T 4a2l_A          209 ----------IPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI  278 (795)
T ss_dssp             ----------C----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE
T ss_pred             ----------cCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE
Confidence                      00113456888887 45677777766669999988766543321        135688887  4566555


Q ss_pred             EecCCcEEEEeCCCCcEEEEEcc------ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec----
Q 009373          307 STSGSDVYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW----  376 (536)
Q Consensus       307 ~~~d~~i~i~d~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~----  376 (536)
                      ++.+ .|.+||..+++.......      -....|.++...++|. |..|+.++-|..|+......    ......    
T Consensus       279 gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~----~~~~~~~~~~  352 (795)
T 4a2l_A          279 GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF----KNIRNIPYKN  352 (795)
T ss_dssp             EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS----EEECCCTTSS
T ss_pred             EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc----eEEcCCCCCC
Confidence            5545 799999887764433211      1235799999998887 55677777799998765421    111110    


Q ss_pred             cCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee--ccccccEEEEEecCC-E-
Q 009373          377 IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML--HGFECNLLSVDIGAD-R-  451 (536)
Q Consensus       377 ~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~-  451 (536)
                      .-....|.++..++ ..|..|+.++-|..||..+..-..             ........  .-....|.++..+.+ . 
T Consensus       353 ~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~v~~i~~d~~g~~  419 (795)
T 4a2l_A          353 SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTS-------------YTLQEDESARGIGSNNIKAVYVDEKKSL  419 (795)
T ss_dssp             SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEE-------------ECCC------CCSCSCEEEEEEETTTTE
T ss_pred             CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEE-------------EecCCCCcccCCCCccEEEEEEcCCCCE
Confidence            11345799999875 678889988889999987531110             00000000  001245666665433 3 


Q ss_pred             EEEecCCCeEEEEeCCchh
Q 009373          452 IVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       452 l~sg~~Dg~i~vW~~~~~~  470 (536)
                      |..|+.++-|..||..++.
T Consensus       420 lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          420 VYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             EEEEETTTEEEEEETTTCC
T ss_pred             EEEEeCcCceeEEeCCCCc
Confidence            7777777779999987653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.60  E-value=2.2e-05  Score=79.95  Aligned_cols=239  Identities=15%  Similarity=0.072  Sum_probs=139.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc----eEEE-EecCCCEEEEEeC------CCcEEEEEcccCcccee-cc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC----TIRA-VAADKKLLVAGGT------DGFIHCWRAVEVLPHLF-DI  237 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~l~sg~~------dg~i~vwd~~~~~~~~~-~~  237 (536)
                      +..++.++.|+.|..+|..+|+.+........    .+.+ -...+..+++++.      +|.|..+|..+++..-. ..
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence            56788888999999999999998876543210    1110 0012455666655      79999999998863211 11


Q ss_pred             cCcccc---cc-------e--------EE----eeCCc-cCE-EEEEEe--CCEEEEEecC----------------CeE
Q 009373          238 SGSEKQ---NT-------Q--------FR----LWEHE-GPI-TSLALD--LTRIYSGSWD----------------MTV  275 (536)
Q Consensus       238 ~~~~~~---~~-------~--------~~----~~~h~-~~v-~~l~~~--~~~l~s~s~d----------------g~i  275 (536)
                      ......   .+       .        ..    ...+. +.+ ..++++  .+.++.++.+                +.|
T Consensus       195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v  274 (571)
T 2ad6_A          195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI  274 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred             CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence            000000   00       0        00    00000 001 123443  3566655532                369


Q ss_pred             EEEeCCCceEeEeeecc-----------ccEE-EEeecCC---EEEEec-CCcEEEEeCCCCcEEEEEccccc-------
Q 009373          276 RVWDRALLKCLKVLRHS-----------DWVY-GLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHV-------  332 (536)
Q Consensus       276 ~iwd~~~~~~~~~~~~~-----------~~v~-~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------  332 (536)
                      ..+|..+++.+..++..           .++. ....+++   .++.++ +|.++++|..+|+.+..+.....       
T Consensus       275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~  354 (571)
T 2ad6_A          275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccc
Confidence            99999999998887621           1121 1224664   455566 79999999999998877643220       


Q ss_pred             -----cce--------------------------EEEEEeCCCCEEEEEc------------------------------
Q 009373          333 -----GNT--------------------------KSLARSHTGDFLFTGG------------------------------  351 (536)
Q Consensus       333 -----~~i--------------------------~~l~~~~~~~~l~tg~------------------------------  351 (536)
                           .++                          ..++++|+..++++..                              
T Consensus       355 d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  434 (571)
T 2ad6_A          355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence                 111                          2357888877776653                              


Q ss_pred             -------CCCcEEEEEcccCccccccceeeeccCCCCCeE--EEEEcCCeEEEEeCCCcEEEEECCcccccCC
Q 009373          352 -------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGR  415 (536)
Q Consensus       352 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~  415 (536)
                             .+|.|..||+.+++      .+-..... ..+.  .+...+..++.++.||.|+.+|.++++..++
T Consensus       435 ~~~~~~~~~g~l~a~D~~tG~------~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~  500 (571)
T 2ad6_A          435 PNGPTKKEMGQIRAFDLTTGK------AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN  500 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCC------EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccCCCCCCeEEEEECCCCC------EEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence                   34778888888873      32222211 1121  1233467888899999999999998765543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.59  E-value=1.1e-05  Score=71.72  Aligned_cols=179  Identities=12%  Similarity=0.054  Sum_probs=118.1

Q ss_pred             EEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEE-ecCCeEEEEeCC
Q 009373          204 RAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG-SWDMTVRVWDRA  281 (536)
Q Consensus       204 ~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~i~iwd~~  281 (536)
                      ..+.. ++.++++.+.+|.|+++|+.+++.             ...+......-..++++++.|+.. -.++.+.+||..
T Consensus        58 qGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv-------------~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQGTLRQLSLESAQP-------------VWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             EEEEEETTEEEEEETTTTEEEECCSSCSSC-------------SEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETT
T ss_pred             ceEEEECCEEEEEcCCCCEEEEEECCCCcE-------------EeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECC
Confidence            34443 345666777788999999988752             111111122224467766555544 468899999999


Q ss_pred             CceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcccc-c---cceEEEEEeCCCCEEEEEcCCCcE
Q 009373          282 LLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAH-V---GNTKSLARSHTGDFLFTGGEDGAI  356 (536)
Q Consensus       282 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-~---~~i~~l~~~~~~~~l~tg~~dg~i  356 (536)
                      +.+.+.++.....-..+++++..|+.+. ++.|.++|..+.+.+.++.-+. .   ..++.+.|. +|...+....+..|
T Consensus       125 Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I  203 (268)
T 3nok_A          125 PPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDV  203 (268)
T ss_dssp             TTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred             cCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeE
Confidence            9999999985555567778888877776 7899999999999888875321 1   245667776 67666666678899


Q ss_pred             EEEEcccCcccccccee--ee-----ccCCCCCeEEEEEcC--C-eEEEE
Q 009373          357 HMYEIINDCTEANVLLV--AT-----WIPHTGPVNSLAFEF--P-WLVSA  396 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~--~~-----~~~h~~~v~~l~~~~--~-~l~s~  396 (536)
                      .+.|..++.....+..-  ..     ...-....+.|+++|  + +++||
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999988533221110  00     011234679999986  3 44444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.56  E-value=6.9e-06  Score=78.14  Aligned_cols=203  Identities=8%  Similarity=0.010  Sum_probs=120.4

Q ss_pred             CccccEEEEEEecCCCEEEEEeC-----CCcEEEEECCCCceeeeeCCC------Cc--eEEEEecCCCEE-EEEe---C
Q 009373          156 GHTEAVLTVFVLASAKLLFTSGY-----DSIVRMWHLEDGFSIASSKPL------GC--TIRAVAADKKLL-VAGG---T  218 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sgs~-----dg~v~iwd~~~~~~~~~~~~~------~~--~v~~~~~~~~~l-~sg~---~  218 (536)
                      +|-..+..++++++++++++-..     ++.|.+||+.+++.+..+...      ..  .-.++.+++..+ ++..   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            56778999999999887776544     578999999999876655321      11  234555654444 5544   6


Q ss_pred             CCcEEEEEcccCccceecccC--cccc-cceEEeeC--------------CccCEEEEEE--eCCEEEEEecCC-eEEEE
Q 009373          219 DGFIHCWRAVEVLPHLFDISG--SEKQ-NTQFRLWE--------------HEGPITSLAL--DLTRIYSGSWDM-TVRVW  278 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~--~~~~-~~~~~~~~--------------h~~~v~~l~~--~~~~l~s~s~dg-~i~iw  278 (536)
                      ++.|.+||+.++..... +..  .... .......+              ....+..+++  +++.|+.+..++ .+..+
T Consensus       144 ~~~i~v~d~~~g~~~r~-~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~  222 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARV-LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRI  222 (343)
T ss_dssp             GCEEEEEETTTCCEEEE-CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEE
T ss_pred             CCeEEEEECCCCCEEEE-ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEE
Confidence            78999999987642211 100  0000 00000000              1124677888  567788877666 44444


Q ss_pred             eCC---Cce-----E---eEeeeccccE--EEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCC
Q 009373          279 DRA---LLK-----C---LKVLRHSDWV--YGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  344 (536)
Q Consensus       279 d~~---~~~-----~---~~~~~~~~~v--~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~  344 (536)
                      +..   .+.     .   +....+....  .++.+++.++++.. ++.|.+||..+++........+...+.++++.+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG  302 (343)
T ss_dssp             EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS
T ss_pred             EHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCC
Confidence            421   110     0   0111122222  34557888888877 78999999966764433322234568999999999


Q ss_pred             CEEEEEcCCCcEEEE
Q 009373          345 DFLFTGGEDGAIHMY  359 (536)
Q Consensus       345 ~~l~tg~~dg~i~iw  359 (536)
                      .++++.+..+.+.+|
T Consensus       303 ~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          303 YLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CEEEEECCGGGSGGG
T ss_pred             cEEEEeCcccccccc
Confidence            888887765544433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.53  E-value=2.3e-05  Score=81.62  Aligned_cols=231  Identities=11%  Similarity=0.112  Sum_probs=127.8

Q ss_pred             EEEEec-CCCEEEEEeCCC-----------cEEEEECCCCce--eeee-CCCC--ceEEEEecCCCEEEEEeC-CCcEEE
Q 009373          163 TVFVLA-SAKLLFTSGYDS-----------IVRMWHLEDGFS--IASS-KPLG--CTIRAVAADKKLLVAGGT-DGFIHC  224 (536)
Q Consensus       163 ~v~~~~-~~~~l~sgs~dg-----------~v~iwd~~~~~~--~~~~-~~~~--~~v~~~~~~~~~l~sg~~-dg~i~v  224 (536)
                      .+++.+ ++++++.|+.+.           .+.+||..+++-  +..+ ..+.  +...++..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 888889888653           588999987753  2222 1122  223455688999999984 468999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEe-cC-----CeEEEEeCCCceEeEe-------ee
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGS-WD-----MTVRVWDRALLKCLKV-------LR  290 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~-------~~  290 (536)
                      ||..+..-.           ....+......-..... +++.++.|+ .+     ..+.+||..+.+-...       +.
T Consensus       270 yd~~t~~W~-----------~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~  338 (656)
T 1k3i_A          270 YDSSSDSWI-----------PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML  338 (656)
T ss_dssp             EEGGGTEEE-----------ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGC
T ss_pred             ecCcCCcee-----------ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccc
Confidence            998765311           11111112222334445 788888888 44     5799999987664332       00


Q ss_pred             ---------ccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEccccc---------cceEEEEEeC-CCCEEEEE
Q 009373          291 ---------HSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHV---------GNTKSLARSH-TGDFLFTG  350 (536)
Q Consensus       291 ---------~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~---------~~i~~l~~~~-~~~~l~tg  350 (536)
                               ....+..+- .++..+..+....+..||..+......... +.         ..-.++.+.. ++++++.|
T Consensus       339 ~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~-~~~~~~~~~~~~~~~av~~~~~~~~i~v~G  417 (656)
T 1k3i_A          339 TADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGK-RQSNRGVAPDAMCGNAVMYDAVKGKILTFG  417 (656)
T ss_dssp             CCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEE-CEETTEECCCCBTCEEEEEETTTTEEEEEC
T ss_pred             cccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCc-cccccccCCCCCCCceEeccCCCCeEEEEe
Confidence                     011111111 223333222345688999988765433321 11         1234444543 67788888


Q ss_pred             cCCC-----------cEEEEEcccCccccccceee--eccCCCCCeEEEEE-cCCeEEEEeCC-----------CcEEEE
Q 009373          351 GEDG-----------AIHMYEIINDCTEANVLLVA--TWIPHTGPVNSLAF-EFPWLVSAAGD-----------GKLSLI  405 (536)
Q Consensus       351 ~~dg-----------~i~iwd~~~~~~~~~~~~~~--~~~~h~~~v~~l~~-~~~~l~s~s~d-----------g~i~vw  405 (536)
                      +.++           .|.+||..+..-    ..+.  .+......-.++.. ++..++.|+.+           ..+.+|
T Consensus       418 G~~~~~~~~~~~~~~~v~~yd~~~~~W----~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          418 GSPDYQDSDATTNAHIITLGEPGTSPN----TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             CBSSSSSSBCCCCEEEEECCSTTSCCE----EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             CCCCCCCCCcCCcceEEEcCCCCCCCe----eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEE
Confidence            7543           577777765521    1111  11111122233444 56788888754           468899


Q ss_pred             ECCc
Q 009373          406 DVRK  409 (536)
Q Consensus       406 d~~~  409 (536)
                      |..+
T Consensus       494 dp~t  497 (656)
T 1k3i_A          494 VPEQ  497 (656)
T ss_dssp             EGGG
T ss_pred             cCCC
Confidence            9876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.45  E-value=0.00026  Score=75.34  Aligned_cols=285  Identities=10%  Similarity=0.035  Sum_probs=163.9

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC--------------CCCceEEEEecC-CCEEEEEeCCCcE
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK--------------PLGCTIRAVAAD-KKLLVAGGTDGFI  222 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~--------------~~~~~v~~~~~~-~~~l~sg~~dg~i  222 (536)
                      ...|.++...++|. |..|+..+-|.++|..++.......              .....|.++..| ...|..|+.++-|
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl  335 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGI  335 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCE
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeE
Confidence            45689998877766 5556665568889987764322111              123467777643 3467888888888


Q ss_pred             EEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeC-CEEEEEecCCeEEEEeCCCceEeEeee----ccccEEE
Q 009373          223 HCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL-TRIYSGSWDMTVRVWDRALLKCLKVLR----HSDWVYG  297 (536)
Q Consensus       223 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~v~~  297 (536)
                      ..++..+.....+......  ..  ...-....|.++..+. +.|..|+.++-|..||..++.......    ....|.+
T Consensus       336 ~~~~~~~~~~~~~~~~~~~--~~--~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~  411 (781)
T 3v9f_A          336 NFISNAPPTFHTWSYSPTQ--MN--ESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC  411 (781)
T ss_dssp             EEECSSCCSCEEEC----C--CC--SSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred             EEeCCCCCcceeeccCccc--cc--cCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence            8998765432211110000  00  0001235688998854 678888878889999987654432211    3456888


Q ss_pred             Ee--ecCCEEEEecCCcEEEEeCCCCcEEEEEc-cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          298 LA--PHDTTVASTSGSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       298 ~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                      +.  .++.+.+++.++.+..+|..+++...... ......|.++...++|.+ ..|+. +-+..||..++..    ....
T Consensus       412 i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~----~~~~  485 (781)
T 3v9f_A          412 SLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKV----IHHY  485 (781)
T ss_dssp             EEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSC----CEEE
T ss_pred             EEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeE----Eecc
Confidence            87  35666665556789999988775433221 113457899988887764 44555 4588899876521    1111


Q ss_pred             ecc---CCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC
Q 009373          375 TWI---PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD  450 (536)
Q Consensus       375 ~~~---~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  450 (536)
                      ...   .....|.++..++ ..|..|+.++-|..||..+..-.             ..... .  .-....|.++..+.+
T Consensus       486 ~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-------------~~~~~-~--~l~~~~i~~i~~d~~  549 (781)
T 3v9f_A          486 DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVR-------------KFNQY-E--GFCSNTINQIYRSSK  549 (781)
T ss_dssp             CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEE-------------EECTT-T--TCSCSCEEEEEECTT
T ss_pred             cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEE-------------EccCC-C--CCCCCeeEEEEECCC
Confidence            111   1146789998875 67777777555888887653110             00000 0  001245666666543


Q ss_pred             -EEEEecCCCeEEEEeCCch
Q 009373          451 -RIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       451 -~l~sg~~Dg~i~vW~~~~~  469 (536)
                       .|..|+.+|.|..||..++
T Consensus       550 g~lWi~T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          550 GQMWLATGEGLVCFPSARNF  569 (781)
T ss_dssp             SCEEEEETTEEEEESCTTTC
T ss_pred             CCEEEEECCCceEEECCCCC
Confidence             3444444676588887654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.43  E-value=0.00015  Score=63.83  Aligned_cols=179  Identities=13%  Similarity=-0.004  Sum_probs=114.6

Q ss_pred             EEecCCC-EEEEEeCC--CcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEEEEeCCEEEEE-ecCCeEEEEe
Q 009373          205 AVAADKK-LLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLALDLTRIYSG-SWDMTVRVWD  279 (536)
Q Consensus       205 ~~~~~~~-~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~l~s~-s~dg~i~iwd  279 (536)
                      .+..++. ++.+.+.+  ..|+++|+.+++.             .....-. ...-..+++.++.|+.. -.++.+.+||
T Consensus        25 GL~~~~~~LyestG~~g~S~v~~vD~~tgkv-------------~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           25 GLFYLRGHLYESTGETGRSSVRKVDLETGRI-------------LQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             EEEEETTEEEEEECCTTSCEEEEEETTTCCE-------------EEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred             cEEEECCEEEEECCCCCCceEEEEECCCCCE-------------EEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence            4443344 44455554  4899999988742             1222111 11223456666666554 4688999999


Q ss_pred             CCCceEeEeeeccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccc----cceEEEEEeCCCCEEEEEcCCC
Q 009373          280 RALLKCLKVLRHSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHV----GNTKSLARSHTGDFLFTGGEDG  354 (536)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~----~~i~~l~~~~~~~~l~tg~~dg  354 (536)
                      ..+.+.+.++.....-..+++++..|+.+. ++.|.++|..+.+.+.++.-+..    ..++.+.+. +|...+....+.
T Consensus        92 ~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X           92 LATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             TTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred             CCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence            999999999985555567777777666655 78899999999998888753211    245666665 666666666788


Q ss_pred             cEEEEEcccCccccccceeeecc--------CCCCCeEEEEEcC--CeEEEEeC
Q 009373          355 AIHMYEIINDCTEANVLLVATWI--------PHTGPVNSLAFEF--PWLVSAAG  398 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~--~~l~s~s~  398 (536)
                      .|.+.|..++.....+.. ..+.        ......+.|+++|  +.|+..+.
T Consensus       171 ~I~vIDp~tG~V~~~idl-~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDL-QALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEECTTTCBEEEEEEC-GGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eEEEEECCCCCEEEEEEC-CcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            999999999853222111 1111        1234679999987  45555443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.40  E-value=0.00024  Score=68.24  Aligned_cols=191  Identities=10%  Similarity=0.040  Sum_probs=117.0

Q ss_pred             cCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccceEEee------C-CccCEEEEEE--eCCEEEEEecC-----
Q 009373          208 ADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW------E-HEGPITSLAL--DLTRIYSGSWD-----  272 (536)
Q Consensus       208 ~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~--~~~~l~s~s~d-----  272 (536)
                      .+.++| ++|..+++|+++|+.+....         ......+.      . ....-..+..  ++ .++++..+     
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~---------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~  162 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE---------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG  162 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS---------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC---------ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence            445554 55667899999998654210         11111110      0 0011222333  45 66666555     


Q ss_pred             -CeEEEEeCCCceEeEeeecc-c---cE--EEEeecCCEEEEec--------------------CCcEEEEeCCCCcEEE
Q 009373          273 -MTVRVWDRALLKCLKVLRHS-D---WV--YGLAPHDTTVASTS--------------------GSDVYIWDTNSGCLLT  325 (536)
Q Consensus       273 -g~i~iwd~~~~~~~~~~~~~-~---~v--~~~~~~~~~l~~~~--------------------d~~i~i~d~~~~~~~~  325 (536)
                       |.|.++|..+++.+..+... .   .-  .-++|+++.++++.                    +.+|.+||+.+++.+.
T Consensus       163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~  242 (462)
T 2ece_A          163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH  242 (462)
T ss_dssp             CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence             78999999999999888722 1   12  23368888888884                    6889999999998888


Q ss_pred             EEccc-cccceEEEEE--eCCCCEEEEEc------CCCcEEEEEcccCcccccccee--ee--ccC-----------CCC
Q 009373          326 VVNGA-HVGNTKSLAR--SHTGDFLFTGG------EDGAIHMYEIINDCTEANVLLV--AT--WIP-----------HTG  381 (536)
Q Consensus       326 ~~~~~-~~~~i~~l~~--~~~~~~l~tg~------~dg~i~iwd~~~~~~~~~~~~~--~~--~~~-----------h~~  381 (536)
                      ++..+ .......+.|  +|+++++++++      .+++|.+|....+.- .....+  ..  ..+           -..
T Consensus       243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~-~~~~vIdi~~~~v~~~lp~~~~~f~~~~~  321 (462)
T 2ece_A          243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW-NAEKVIEIPAEPLEGNLPEILKPFKAVPP  321 (462)
T ss_dssp             EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE-EEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred             EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce-eEEEEEeCCCccccccccccccccccCCC
Confidence            88653 2234555655  99999888777      456888777654311 000000  00  000           023


Q ss_pred             CeEEEEEcC--CeEEEEeC-CCcEEEEECCc
Q 009373          382 PVNSLAFEF--PWLVSAAG-DGKLSLIDVRK  409 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~  409 (536)
                      .+..|.+++  ++|+++.. .+.|.+||+..
T Consensus       322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d  352 (462)
T 2ece_A          322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISN  352 (462)
T ss_dssp             CCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred             ceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            467788875  67777665 68999999864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.38  E-value=0.00017  Score=73.46  Aligned_cols=238  Identities=15%  Similarity=0.122  Sum_probs=139.1

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCC---------ceEEEEe-cCCC-EEEEEeC------CCcEEEEEcccCcc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---------CTIRAVA-ADKK-LLVAGGT------DGFIHCWRAVEVLP  232 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~-~~~~-~l~sg~~------dg~i~vwd~~~~~~  232 (536)
                      +..++.++.|+.|..+|..+|+.+.......         .++..=. .+++ .+++++.      +|.|..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            5678888999999999999999887654322         2222111 1223 6666653      78999999998864


Q ss_pred             ceecccCcccc-----cceEE----------------------ee--CCccCEEEEEE--eCCEEEEEec----------
Q 009373          233 HLFDISGSEKQ-----NTQFR----------------------LW--EHEGPITSLAL--DLTRIYSGSW----------  271 (536)
Q Consensus       233 ~~~~~~~~~~~-----~~~~~----------------------~~--~h~~~v~~l~~--~~~~l~s~s~----------  271 (536)
                      .-. .......     .....                      ..  +....-..+++  ..+.++.++.          
T Consensus       197 ~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWM-RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEE-EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             Eee-cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            221 1100000     00000                      00  00000012344  3466666553          


Q ss_pred             ----------C----CeEEEEeCCCceEeEeee---cc--------ccEEE-Ee-ecCC---EEEEec-CCcEEEEeCCC
Q 009373          272 ----------D----MTVRVWDRALLKCLKVLR---HS--------DWVYG-LA-PHDT---TVASTS-GSDVYIWDTNS  320 (536)
Q Consensus       272 ----------d----g~i~iwd~~~~~~~~~~~---~~--------~~v~~-~~-~~~~---~l~~~~-d~~i~i~d~~~  320 (536)
                                |    +.|..+|..+++.+..++   |.        .++.. .. .+++   .++.++ +|.++++|..+
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence                      2    689999999999998876   21        12221 11 3563   566666 89999999999


Q ss_pred             CcEEEEEccccc------------cce--------------------------------EEEEEeCCCCEEEEEc-----
Q 009373          321 GCLLTVVNGAHV------------GNT--------------------------------KSLARSHTGDFLFTGG-----  351 (536)
Q Consensus       321 ~~~~~~~~~~~~------------~~i--------------------------------~~l~~~~~~~~l~tg~-----  351 (536)
                      |+.+..+.....            .++                                ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            998876643210            000                                1345666655555432     


Q ss_pred             ----------------------------CCCcEEEEEcccCccccccceeeeccCCCCCeE--EEEEcCCeEEEEeCCCc
Q 009373          352 ----------------------------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVN--SLAFEFPWLVSAAGDGK  401 (536)
Q Consensus       352 ----------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~l~s~s~dg~  401 (536)
                                                  .+|.|.-||+.+++      .+-..... .++.  .+...+..++.++.||.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~------~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~  508 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGK------VVWEHKEH-LPLWAGVLATAGNLVFTGTGDGY  508 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCC------EEEEEEES-SCCCSCCEEETTTEEEEECTTSE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCC------EEEEecCC-CCCcccceEeCCCEEEEECCCCc
Confidence                                        25778888988883      22222111 1111  23345688999999999


Q ss_pred             EEEEECCcccccCC
Q 009373          402 LSLIDVRKLLRSGR  415 (536)
Q Consensus       402 i~vwd~~~~~~~~~  415 (536)
                      ++.||.++++..++
T Consensus       509 l~A~D~~tG~~lW~  522 (582)
T 1flg_A          509 FKAFDAKSGKELWK  522 (582)
T ss_dssp             EEEEETTTCCEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            99999999765554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.37  E-value=0.0003  Score=65.48  Aligned_cols=222  Identities=9%  Similarity=-0.035  Sum_probs=126.7

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEecCCCEEEEEeCCC--cEEEEEcccCcccee
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVAADKKLLVAGGTDG--FIHCWRAVEVLPHLF  235 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~  235 (536)
                      .....++|+++++++++-..++.|..||.... ....+. +....-+++.++++++++.....  .|..++..++...  
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~--  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE--  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE--
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE--
Confidence            45678999999998777778899999998754 322222 22222344557888655554332  4666666555311  


Q ss_pred             cccCcccccceEEeeCCccCEEEEEE-eCCEEEEEe-cCCeEEEEeCCCceE-eEee----------eccccEEEEeecC
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGS-WDMTVRVWDRALLKC-LKVL----------RHSDWVYGLAPHD  302 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s-~dg~i~iwd~~~~~~-~~~~----------~~~~~v~~~~~~~  302 (536)
                               ..... ........++. .+..++... .++.|..+|..+++. +...          ..-.....+++++
T Consensus       109 ---------~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg  178 (306)
T 2p4o_A          109 ---------TLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  178 (306)
T ss_dssp             ---------EEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             ---------EEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCC
Confidence                     11111 11112233333 444444444 588999999876432 1100          0112345567888


Q ss_pred             CEEEEec--CCcEEEEeCCC-CcE--EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          303 TTVASTS--GSDVYIWDTNS-GCL--LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       303 ~~l~~~~--d~~i~i~d~~~-~~~--~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      ..++.+.  .+.|..||+.. ++.  ...+.  .......++++++|++.++....+.|.++|.. +..    ..+....
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~--~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~----~~~~~~~  251 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST----TIIAQAE  251 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE----EEEECGG
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCCCccEEEe--ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE----EEEeecc
Confidence            7665554  68899999875 321  12221  11345678899999887777778899999865 311    1122233


Q ss_pred             CCCCCeEEEEEc---C--CeEEEEeCCC
Q 009373          378 PHTGPVNSLAFE---F--PWLVSAAGDG  400 (536)
Q Consensus       378 ~h~~~v~~l~~~---~--~~l~s~s~dg  400 (536)
                      ......++++|.   +  +.|+.++..+
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cccCCceEEEEecccCCCCEEEEECCCC
Confidence            334567899996   3  4566555443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.0011  Score=70.50  Aligned_cols=244  Identities=9%  Similarity=0.027  Sum_probs=143.5

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-------CCceEEEEec-CCCEEEEEeCCCcEEEEEcccC
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-------LGCTIRAVAA-DKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~-~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      ..|.++...+++.+.+ |+.+ -+.+||..+++.......       ....|.++.. ....|..|+..+-|.+++..++
T Consensus       211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~  288 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQN  288 (781)
T ss_dssp             SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC
T ss_pred             CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCC
Confidence            5689998888777555 4445 588999877654322111       2345777774 3456777887667888987665


Q ss_pred             ccceecccCcccc-cceEEeeCCccCEEEEEEe-CCEEEEEecCCeEEEEeCCCceEeEee-------e---ccccEEEE
Q 009373          231 LPHLFDISGSEKQ-NTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVL-------R---HSDWVYGL  298 (536)
Q Consensus       231 ~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~---~~~~v~~~  298 (536)
                      ....+....-... .......-....|.++..| .+.|..|+.++-|..++..+.......       .   ....|.++
T Consensus       289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i  368 (781)
T 3v9f_A          289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV  368 (781)
T ss_dssp             ---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE
T ss_pred             eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE
Confidence            3211110000000 0000001134578898884 456888888888999998765433221       1   23568888


Q ss_pred             ee--cCCEEEEecCCcEEEEeCCCCcEEEEEc--cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceee
Q 009373          299 AP--HDTTVASTSGSDVYIWDTNSGCLLTVVN--GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       299 ~~--~~~~l~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~  374 (536)
                      ..  ++.+.+++.++.+..||..++.......  ......|.++...++|.+ ..|+.++-+..+|..++..    ....
T Consensus       369 ~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~----~~~~  443 (781)
T 3v9f_A          369 CDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKF----QIIE  443 (781)
T ss_dssp             EECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEE----EECC
T ss_pred             EEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcE----EEec
Confidence            73  4566555547789999987653321110  123457899988887774 4566666788898766521    1111


Q ss_pred             eccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcc
Q 009373          375 TWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ........|.++..++ ..|..|+. +-|..+|..+.
T Consensus       444 ~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          444 LEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASK  479 (781)
T ss_dssp             STTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSS
T ss_pred             cCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCC
Confidence            0012356789998875 67777777 56889997753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.34  E-value=0.00042  Score=65.02  Aligned_cols=237  Identities=9%  Similarity=-0.029  Sum_probs=133.7

Q ss_pred             eeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CC-C-----------------CceEEE--EecCCCE
Q 009373          154 LYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KP-L-----------------GCTIRA--VAADKKL  212 (536)
Q Consensus       154 l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~-~-----------------~~~v~~--~~~~~~~  212 (536)
                      +.+.-....++++++++++++++..++.|..|+..++...... .. .                 ......  +.+++..
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~   93 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ   93 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc
Confidence            3443344567889999998888889999999998765432211 00 0                 012333  4453445


Q ss_pred             EEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC-CccCEEEEEEeC--CEEEEEec------------------
Q 009373          213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDL--TRIYSGSW------------------  271 (536)
Q Consensus       213 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~------------------  271 (536)
                      |+++...+.|..+|..++....+.          ....+ .......+++++  ..++.+..                  
T Consensus        94 l~v~d~~~~i~~~d~~~g~~~~~~----------~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~  163 (322)
T 2fp8_A           94 LYIVDCYYHLSVVGSEGGHATQLA----------TSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK  163 (322)
T ss_dssp             EEEEETTTEEEEECTTCEECEEEE----------SEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred             EEEEECCCCEEEEeCCCCEEEEec----------ccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence            666655556888886544211110          00000 112456777743  34444432                  


Q ss_pred             CCeEEEEeCCCceEeEeeeccccE--EEEeecCCEEEEe-c-CCcEEEEeCCCCc--EEEEEccccccceEEEEEeCCCC
Q 009373          272 DMTVRVWDRALLKCLKVLRHSDWV--YGLAPHDTTVAST-S-GSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGD  345 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~-~-d~~i~i~d~~~~~--~~~~~~~~~~~~i~~l~~~~~~~  345 (536)
                      ++.|..+|..+++...........  .++.++++.++.+ . .+.|.+|++....  ....+.. ..+ ...++++++|.
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~  241 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGH  241 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSC
T ss_pred             CceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCC
Confidence            367888998777654333211222  3455788765554 4 5889999987531  1122211 223 77899999998


Q ss_pred             EEEEEcC----------CCcEEEEEcccCccccccceeeeccCC----CCCeEEEEEcCCeEEEEe-CCCcEEEEECCc
Q 009373          346 FLFTGGE----------DGAIHMYEIINDCTEANVLLVATWIPH----TGPVNSLAFEFPWLVSAA-GDGKLSLIDVRK  409 (536)
Q Consensus       346 ~l~tg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~l~s~s-~dg~i~vwd~~~  409 (536)
                      +.++...          .+.|..+|.. +      ..+..+...    ...++++++....|+.++ .++.|.++++..
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF-G------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT-S------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEEecCcccccccCCCccEEEEECCC-C------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence            7666544          4567788764 3      222222222    245677777666666554 577899998764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.28  E-value=9.5e-05  Score=70.98  Aligned_cols=176  Identities=14%  Similarity=0.043  Sum_probs=112.9

Q ss_pred             EEEEEecCCCEEEEEeCC------CcEEEEECCCCceeeeeCCCCce---E--EEEecCCCEEEEEe-------------
Q 009373          162 LTVFVLASAKLLFTSGYD------SIVRMWHLEDGFSIASSKPLGCT---I--RAVAADKKLLVAGG-------------  217 (536)
Q Consensus       162 ~~v~~~~~~~~l~sgs~d------g~v~iwd~~~~~~~~~~~~~~~~---v--~~~~~~~~~l~sg~-------------  217 (536)
                      ..+...|+| +++++..+      |.|.+.|.++++.+.++.....+   -  .-++|+++.+++..             
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            345678999 77777665      78999999999999888633222   2  34579999888885             


Q ss_pred             ------CCCcEEEEEcccCccceecccCcccccceEEeeC--CccCEEEEEE----eCCEEEEEe------cCCeEEEEe
Q 009373          218 ------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE--HEGPITSLAL----DLTRIYSGS------WDMTVRVWD  279 (536)
Q Consensus       218 ------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~----~~~~l~s~s------~dg~i~iwd  279 (536)
                            .+.+|.+||+.+++             ...++.-  .......+.|    ++++++.+.      .+++|.+|.
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k-------------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~  286 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRK-------------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF  286 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTE-------------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCc-------------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence                  47899999997642             1222221  1123345545    456665555      566887765


Q ss_pred             CCCceE--eEeee--c-----------------cccEE--EEeecCCEEEEec--CCcEEEEeCCC---CcEEEEEcccc
Q 009373          280 RALLKC--LKVLR--H-----------------SDWVY--GLAPHDTTVASTS--GSDVYIWDTNS---GCLLTVVNGAH  331 (536)
Q Consensus       280 ~~~~~~--~~~~~--~-----------------~~~v~--~~~~~~~~l~~~~--d~~i~i~d~~~---~~~~~~~~~~~  331 (536)
                      ...++.  .+.+.  .                 .....  .+++++++|.++.  .+.|.+||+..   .+.+..+..+-
T Consensus       287 ~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG  366 (462)
T 2ece_A          287 YEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGG  366 (462)
T ss_dssp             EETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBT
T ss_pred             ecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCC
Confidence            544321  11111  0                 11222  3559999998887  68999999863   35555554331


Q ss_pred             c-------------cceEEEEEeCCCCEEEEEc
Q 009373          332 V-------------GNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       332 ~-------------~~i~~l~~~~~~~~l~tg~  351 (536)
                      .             +....+.++|+|++|+++.
T Consensus       367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            0             1368899999999999887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.20  E-value=0.003  Score=57.26  Aligned_cols=209  Identities=8%  Similarity=0.050  Sum_probs=119.8

Q ss_pred             ccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCC--CCceEEEEecCCCEEE-EEeCCCcEEEEEcccCccce
Q 009373          159 EAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKKLLV-AGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~-sg~~dg~i~vwd~~~~~~~~  234 (536)
                      ..+..+++++++..| ++-..++.|..+++.++........  ....-.++.+++..|+ +-...+.|.++++.....  
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--  113 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--  113 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence            457799999966544 4555678999999976654333322  2233455666655444 445567899988754311  


Q ss_pred             ecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEec---CCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCEE
Q 009373          235 FDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW---DMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTV  305 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~---dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l  305 (536)
                                 .............++++  ++.|+.+..   .+.|..+++.... ...+.  .......++  +++..|
T Consensus       114 -----------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          114 -----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             -----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEE
T ss_pred             -----------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEE
Confidence                       11111112456788885  466666554   3688888875432 22222  122344444  656555


Q ss_pred             EEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCC-CC
Q 009373          306 ASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHT-GP  382 (536)
Q Consensus       306 ~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~-~~  382 (536)
                      +.+.  .+.|.++|+........+.  .......++.. .+.++++....+.|.++|..++      ..+..+.... ..
T Consensus       182 yv~d~~~~~I~~~~~~g~~~~~~~~--~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g------~~~~~i~~g~~~~  252 (267)
T 1npe_A          182 CWVDAGTHRAECLNPAQPGRRKVLE--GLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS------KEMDTFHPHKQTR  252 (267)
T ss_dssp             EEEETTTTEEEEEETTEEEEEEEEE--CCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT------EEEEEECCSSCCC
T ss_pred             EEEECCCCEEEEEecCCCceEEEec--CCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC------CceEEEccccccc
Confidence            4444  5889999997654333332  22344567665 4445555556789999998877      3444443222 23


Q ss_pred             eEEEEEcC
Q 009373          383 VNSLAFEF  390 (536)
Q Consensus       383 v~~l~~~~  390 (536)
                      ...+++.|
T Consensus       253 p~gi~~~~  260 (267)
T 1npe_A          253 LYGITIAL  260 (267)
T ss_dssp             CCCEEEEC
T ss_pred             cceeeecC
Confidence            55666654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.16  E-value=0.00022  Score=70.97  Aligned_cols=182  Identities=11%  Similarity=0.001  Sum_probs=113.5

Q ss_pred             cCCCEEEEEeC-CCcEEEEECCCCceee--eeCC-CCceEEEE-e-cCCCEEEEEe------------------CCCcEE
Q 009373          168 ASAKLLFTSGY-DSIVRMWHLEDGFSIA--SSKP-LGCTIRAV-A-ADKKLLVAGG------------------TDGFIH  223 (536)
Q Consensus       168 ~~~~~l~sgs~-dg~v~iwd~~~~~~~~--~~~~-~~~~v~~~-~-~~~~~l~sg~------------------~dg~i~  223 (536)
                      +||++|+.... ++.|.+.|+.+.++..  .+.. ....-.++ . |+++++++++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            37787776665 5679999999999877  4432 33333454 4 8999998884                  345788


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC-------------------------------
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-------------------------------  272 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-------------------------------  272 (536)
                      +.|.++.+... .+          ...+ .-.-..+..+++++++.+.+                               
T Consensus       179 vID~~t~~v~~-qI----------~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          179 AVDADKWEVAW-QV----------LVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             EEETTTTEEEE-EE----------EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             EEECCCCeEEE-EE----------EeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence            88887643111 00          0001 10011111133333333322                               


Q ss_pred             -------CeEEEEeCCC--ceE-eEeeec--cccEEEEeecCCEEEEec--CCcEEEEeCCCCc------------EEEE
Q 009373          273 -------MTVRVWDRAL--LKC-LKVLRH--SDWVYGLAPHDTTVASTS--GSDVYIWDTNSGC------------LLTV  326 (536)
Q Consensus       273 -------g~i~iwd~~~--~~~-~~~~~~--~~~v~~~~~~~~~l~~~~--d~~i~i~d~~~~~------------~~~~  326 (536)
                             +.|.+.|..+  ++. +..+..  ...-..++|+|+++++++  +.+|.++|+.+.+            ....
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~  326 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE  326 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred             CCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence                   3478888877  444 445542  223344569999988887  6889999999653            2333


Q ss_pred             EccccccceEEEEEeCCCCEEEEEcCCCcEEEEEccc
Q 009373          327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN  363 (536)
Q Consensus       327 ~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~  363 (536)
                      +.  -......++|+|+|...++.-.|+.|.+||+..
T Consensus       327 v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          327 PE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            32  345688999999995555677899999999977

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.10  E-value=0.0026  Score=59.50  Aligned_cols=241  Identities=10%  Similarity=0.021  Sum_probs=129.3

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccc--cc--e--EEeeCCccCEEEEEEe--CCEEEEEecCCeE
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQ--NT--Q--FRLWEHEGPITSLALD--LTRIYSGSWDMTV  275 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~--~--~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i  275 (536)
                      .++.+++++++++..++.|..|+..++....+........  ..  .  .........+..++++  .+.|+.+...+.|
T Consensus        24 i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i  103 (322)
T 2fp8_A           24 FTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHL  103 (322)
T ss_dssp             EECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEE
T ss_pred             EEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCE
Confidence            3455778878888899999999876543211110000000  00  0  0000012357788885  4678888777778


Q ss_pred             EEEeCCCceEeEeee--c---cccEEEEe--e-cCCEEEEecC------------------CcEEEEeCCCCcEEEEEcc
Q 009373          276 RVWDRALLKCLKVLR--H---SDWVYGLA--P-HDTTVASTSG------------------SDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       276 ~iwd~~~~~~~~~~~--~---~~~v~~~~--~-~~~~l~~~~d------------------~~i~i~d~~~~~~~~~~~~  329 (536)
                      ..+|..+++......  .   ......+.  + +++++++...                  +.|..||..+++...... 
T Consensus       104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-  182 (322)
T 2fp8_A          104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-  182 (322)
T ss_dssp             EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-
T ss_pred             EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-
Confidence            899987654322111  1   12344554  6 7777776532                  568889987776433221 


Q ss_pred             ccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeC--------
Q 009373          330 AHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAG--------  398 (536)
Q Consensus       330 ~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--------  398 (536)
                       .......++++|+++.|+.+ +..+.|.+|++..... .....+..+   .+ ...+++++  .+.++...        
T Consensus       183 -~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~~~~~~~~~  256 (322)
T 2fp8_A          183 -ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKI---PN-PGNIKRNADGHFWVSSSEELDGNMHG  256 (322)
T ss_dssp             -EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEEC---SS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred             -CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeC---CC-CCCeEECCCCCEEEEecCcccccccC
Confidence             22345679999999866554 5678999999875321 111122222   22 67888875  44444333        


Q ss_pred             --CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc-cccEEEEEe-cCCEEEEecCCCeEEEEeCCc
Q 009373          399 --DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF-ECNLLSVDI-GADRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       399 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~l~sg~~Dg~i~vW~~~~  468 (536)
                        .+.|..+|... .         ....+.. .      .+. -..+.++.+ ++.++++....+.|..+++..
T Consensus       257 ~~~~~v~~~d~~G-~---------~~~~~~~-~------~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          257 RVDPKGIKFDEFG-N---------ILEVIPL-P------PPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             CEEEEEEEECTTS-C---------EEEEEEC-C------TTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred             CCccEEEEECCCC-C---------EEEEEEC-C------CCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence              35677777532 1         1111100 0      000 011222222 444666666788899998764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.08  E-value=8.8e-05  Score=73.80  Aligned_cols=245  Identities=14%  Similarity=0.077  Sum_probs=138.1

Q ss_pred             eCCEEEEEe-cCCeEEEEeCCCceEeEeee--ccccEEEEe----ecCCEEEEec-------------------CCcEEE
Q 009373          262 DLTRIYSGS-WDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTS-------------------GSDVYI  315 (536)
Q Consensus       262 ~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~-------------------d~~i~i  315 (536)
                      |+++++... .++.|.+.|+.+.++...+.  .......+.    |++.++++++                   ++.+.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            667766655 45679999999999888554  333444544    7889888883                   357999


Q ss_pred             EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC---------------cEEEEEcccCccc---------ccc-
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------------AIHMYEIINDCTE---------ANV-  370 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---------------~i~iwd~~~~~~~---------~~~-  370 (536)
                      .|..+.+...++.-+  +....++++|+|+++++.+.+.               .|.++|.......         ..+ 
T Consensus       180 ID~~t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            999999988887532  2456788999999999888653               2444443221000         000 


Q ss_pred             ---------ce-eeeccCCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECCcccccC--CCCCCCceeeEEeeCCCeeee
Q 009373          371 ---------LL-VATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSG--RPTSGKRVSRVIEVEPPQRML  435 (536)
Q Consensus       371 ---------~~-~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  435 (536)
                               .. +..+. -.....++.++|  .+++++ ..+.+|.++|+.+.....  .......+  ..      ...
T Consensus       258 VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v--~~------~v~  328 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV--VA------EPE  328 (595)
T ss_dssp             EEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE--EE------CCB
T ss_pred             EEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce--EE------EcC
Confidence                     01 11111 112345677776  455544 468899999999753210  00000000  00      011


Q ss_pred             ccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHH---HHhhhcccc-hh-HHHhhhhccccccCCCCcceeEee
Q 009373          436 HGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR---ARALRGIRL-EN-RMRRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       436 ~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~---~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      -|....-+.+++++...++.-.|+.|.+||+.++.....-   ......+.. +. ..........++|||+.+.+..--
T Consensus       329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence            1222233445555545677888999999998764221100   000000000 00 011122456889999999887666


Q ss_pred             cccCCcC
Q 009373          511 AKKNPMN  517 (536)
Q Consensus       511 ~~~~~~~  517 (536)
                      ++.+.++
T Consensus       409 skdr~~~  415 (595)
T 1fwx_A          409 SKDRFLN  415 (595)
T ss_dssp             CTTSSCC
T ss_pred             Ccccccc
Confidence            6666543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.00  E-value=0.0046  Score=55.96  Aligned_cols=174  Identities=7%  Similarity=-0.047  Sum_probs=106.5

Q ss_pred             ccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeC-C-CCceEEEEecCCCEEEEEeC---CCcEEEEEcccCcc
Q 009373          159 EAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSK-P-LGCTIRAVAADKKLLVAGGT---DGFIHCWRAVEVLP  232 (536)
Q Consensus       159 ~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~-~-~~~~v~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~  232 (536)
                      .....+++++++. ++++-...+.|.+++++......... + ....-.++.+++..|+.+..   .+.|..+++.....
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            5678999999755 44455567899999987543222222 1 22233466676666555543   36788887643210


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEE-ecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEEEec
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS  309 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~  309 (536)
                                   .............++++  ++.|+.+ ...+.|.++|.........+........++.++..++.+.
T Consensus       159 -------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~  225 (267)
T 1npe_A          159 -------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTD  225 (267)
T ss_dssp             -------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEE
T ss_pred             -------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEE
Confidence                         01111223456788884  4566544 4568999999976544433333334456665566555554


Q ss_pred             --CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC
Q 009373          310 --GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  345 (536)
Q Consensus       310 --d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~  345 (536)
                        ++.|..+|..+++.+..+..+.......+++.|++.
T Consensus       226 ~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          226 WKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence              588999999999998888643333467788887764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.96  E-value=0.012  Score=55.01  Aligned_cols=274  Identities=12%  Similarity=-0.004  Sum_probs=137.0

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC----CCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK----PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      ...+.+|.|.+.+..+++ +.+|.| +...+.|+.-....    .....+.++..+++.++.++.+|.|.. ....+.  
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~--  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQ--  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE-ESSTTS--
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE-ECCCCC--
Confidence            346899999877777774 456765 33444454333221    123456666544455555666675533 222121  


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCCEEEEe
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~  308 (536)
                              ..........+.+.+..+.+ +++.++.++.+|.|..- ...++.-....  ....+..+.  +++.+++.+
T Consensus       110 --------tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g  180 (327)
T 2xbg_A          110 --------SWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS  180 (327)
T ss_dssp             --------SCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE
T ss_pred             --------CceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE
Confidence                    11111111112344667776 55556556666655321 12233222222  344566665  677788777


Q ss_pred             cCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec-cCCCCCeEEEE
Q 009373          309 SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPHTGPVNSLA  387 (536)
Q Consensus       309 ~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h~~~v~~l~  387 (536)
                      .++.+..-+-..+..-..+.......+..+.+.+++..+++ +.+|.+++.+...+.   ....+..- ..+...+.++.
T Consensus       181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~---tW~~~~~~~~~~~~~~~~v~  256 (327)
T 2xbg_A          181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSE---NWGELLSPLRRNSVGFLDLA  256 (327)
T ss_dssp             TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEE---EECCCBCTTSSCCSCEEEEE
T ss_pred             CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCC---eeEeccCCcccCCcceEEEE
Confidence            77666554322133222222345567889999998876554 467877776422221   11111110 11234588888


Q ss_pred             EcC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe-cCCEEEEecCCCeEEEEe
Q 009373          388 FEF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-GADRIVCGGEEGIVRIWN  465 (536)
Q Consensus       388 ~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~Dg~i~vW~  465 (536)
                      +.+ ..++.++.+|.|. +....+ ..+...           ..    .......+.++.+ ++..++.++.+|.|.-++
T Consensus       257 ~~~~~~~~~~g~~g~i~-~S~DgG-~tW~~~-----------~~----~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          257 YRTPNEVWLAGGAGALL-CSQDGG-QTWQQD-----------VD----VKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             ESSSSCEEEEESTTCEE-EESSTT-SSCEEC-----------GG----GTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             ecCCCEEEEEeCCCeEE-EeCCCC-cccEEc-----------Cc----cCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            864 5566666678773 333222 111100           00    0001112233333 355777888899887766


Q ss_pred             C
Q 009373          466 F  466 (536)
Q Consensus       466 ~  466 (536)
                      -
T Consensus       320 ~  320 (327)
T 2xbg_A          320 T  320 (327)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.95  E-value=0.0041  Score=57.63  Aligned_cols=223  Identities=11%  Similarity=0.034  Sum_probs=119.2

Q ss_pred             CEEEEEeC--CCcEEEEECCCCcee--eeeCCCCceEEEEecCCCEEEEEeCC----CcEEEEEcccCccceecccCccc
Q 009373          171 KLLFTSGY--DSIVRMWHLEDGFSI--ASSKPLGCTIRAVAADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEK  242 (536)
Q Consensus       171 ~~l~sgs~--dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~  242 (536)
                      .+++.|+.  ...+.+||..+++-.  ..+........+...++.+++.|+.+    ..+.+||..+..-.         
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~---------   83 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWY---------   83 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEE---------
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEE---------
Confidence            35555654  357888998876422  22222222222333577788888765    66888887765311         


Q ss_pred             ccceEEeeCCccCEEEEEEeCCEEEEEecC------CeEEEEeCCCceEeEeee--c-cccEEEEeecCCEEEEec----
Q 009373          243 QNTQFRLWEHEGPITSLALDLTRIYSGSWD------MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVASTS----  309 (536)
Q Consensus       243 ~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~----  309 (536)
                        ....+......-....+++..++.|+.+      ..+.+||..+.+-...-.  . ...-.++..++++++.|+    
T Consensus        84 --~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  161 (306)
T 3ii7_A           84 --SKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGN  161 (306)
T ss_dssp             --EEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESC
T ss_pred             --ECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCC
Confidence              1111111111222334466777777765      468899988765433221  1 111122335677766665    


Q ss_pred             ------CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccCccccccceeeeccC
Q 009373          310 ------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIP  378 (536)
Q Consensus       310 ------d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~  378 (536)
                            -..+.+||+.+.+-...-.......-.++... ++.+++.|+.+     ..+.+||+.+..    ...+..+..
T Consensus       162 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~p~  236 (306)
T 3ii7_A          162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE----WKMVSPMPW  236 (306)
T ss_dssp             TTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE----EEECCCCSC
T ss_pred             CCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc----EEECCCCCC
Confidence                  23488999988754433211111111122222 56777777654     358889987752    122222222


Q ss_pred             CCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCc
Q 009373          379 HTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  409 (536)
Q Consensus       379 h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  409 (536)
                      ......++.+++..++.|+.+     ..+.+||+.+
T Consensus       237 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          237 KGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             CBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence            233334455566777777754     4678888876

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.84  E-value=0.0073  Score=55.74  Aligned_cols=227  Identities=15%  Similarity=0.109  Sum_probs=117.3

Q ss_pred             CCEEEEEe-CC-----CcEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeCC-----CcEEEEEcccCccceec
Q 009373          170 AKLLFTSG-YD-----SIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTD-----GFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       170 ~~~l~sgs-~d-----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~~  236 (536)
                      +.+++.|+ .+     ..+.+||+.+.+-..  .+........+...++.+++.|+.+     ..+.+||..+.....  
T Consensus        15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~--   92 (301)
T 2vpj_A           15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV--   92 (301)
T ss_dssp             EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC--
T ss_pred             CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe--
Confidence            44555565 22     468889988764222  2222122222334567788888765     458888887653000  


Q ss_pred             ccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC-----CeEEEEeCCCceEeEeee--c-cccEEEEeecCCEEEEe
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVAST  308 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~  308 (536)
                            ......+......-..+..++..++.|+.+     ..+.+||+.+.+-...-.  . ...-.++..++++++.|
T Consensus        93 ------W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G  166 (301)
T 2vpj_A           93 ------WYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLG  166 (301)
T ss_dssp             ------CEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEEC
T ss_pred             ------eEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEEC
Confidence                  001111111111222333466667777654     368889988765433222  1 11112233567777766


Q ss_pred             c-C-----CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccCccccccceeeecc
Q 009373          309 S-G-----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       309 ~-d-----~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      + +     ..+.+||+.+.+-...-.......-.++.. -++.+++.|+.+     ..+.+||+.+..-    ..+..+.
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W----~~~~~~p  241 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW----TTVTSMT  241 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE----EEECCCS
T ss_pred             CCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE----EECCCCC
Confidence            5 3     459999998876543321111111112222 256777777764     4689999877621    2222222


Q ss_pred             CCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCc
Q 009373          378 PHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  409 (536)
Q Consensus       378 ~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  409 (536)
                      .......++.+++..++.|+.+     ..|.+||+++
T Consensus       242 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          242 TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCC
Confidence            2222233444556666777655     3577888765

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.83  E-value=0.0042  Score=57.39  Aligned_cols=228  Identities=12%  Similarity=0.067  Sum_probs=115.9

Q ss_pred             CCCEEEEEe-CC-----CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC-----CeEEE
Q 009373          209 DKKLLVAGG-TD-----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MTVRV  277 (536)
Q Consensus       209 ~~~~l~sg~-~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~i  277 (536)
                      ++.+++.|+ .+     ..+.+||+.+..-...           ..+......-..+..++..++.|+.+     ..+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~-----------~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~   82 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFL-----------PSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVEC   82 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEEC-----------CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEE
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeC-----------CCCChhhccccEEEECCEEEEEcCCCCCccCceEEE
Confidence            445666666 33     3678888766532111           01111111222333466677777765     46889


Q ss_pred             EeCCCce---EeE--eeec-cccEEEEeecCCEEEEec-C-----CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC
Q 009373          278 WDRALLK---CLK--VLRH-SDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD  345 (536)
Q Consensus       278 wd~~~~~---~~~--~~~~-~~~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~  345 (536)
                      ||..+.+   -..  .+.. ...-..+..++.+++.|+ +     ..+.+||+.+.+....-.......-.+++. -++.
T Consensus        83 ~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~  161 (301)
T 2vpj_A           83 LDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGV  161 (301)
T ss_dssp             EETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTE
T ss_pred             EECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCE
Confidence            9987765   222  2221 111222335677777765 2     358999998876443221111111112222 2567


Q ss_pred             EEEEEcCC-----CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCcccccCC
Q 009373          346 FLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRKLLRSGR  415 (536)
Q Consensus       346 ~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~  415 (536)
                      +++.|+.+     ..+.+||+.+..-    ..+..+......-.++.+++..++.|+.+     ..+.+||+.+..    
T Consensus       162 iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~----  233 (301)
T 2vpj_A          162 IYCLGGYDGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS----  233 (301)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE----
T ss_pred             EEEECCCCCCcccceEEEEeCCCCcE----EeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc----
Confidence            77777754     4588999877621    22222222222233444556667777664     468889987631    


Q ss_pred             CCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCC-----CeEEEEeCCch
Q 009373          416 PTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIWNFSQA  469 (536)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~i~vW~~~~~  469 (536)
                               +............|.    ....++..++.||.+     ..|.+||+.+.
T Consensus       234 ---------W~~~~~~p~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          234 ---------WTTVTSMTTPRCYVG----ATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             ---------EEEECCCSSCCBSCE----EEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             ---------EEECCCCCCccccee----EEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence                     111111111112222    233456677777765     35778888764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.81  E-value=0.0064  Score=56.20  Aligned_cols=225  Identities=12%  Similarity=0.089  Sum_probs=115.4

Q ss_pred             CCEEEEEeCC----CcEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeCCC-----cEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYD----SIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGTDG-----FIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~d----g~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~  238 (536)
                      +.+++.|+.+    ..+..||+.+.+-..  .+............++.+++.|+.++     .+.+||..+..-...   
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV---   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEE---
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeC---
Confidence            3445555543    357888887764222  12211111122335777888887653     577888766532111   


Q ss_pred             CcccccceEEeeCCccCEEEEEEeCCEEEEEecCC-----eEEEEeCCCceEeEeee--c-cccEEEEeecCCEEEEec-
Q 009373          239 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-----TVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVASTS-  309 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~-  309 (536)
                              ..+......-....+++..++.|+.++     .+.+||+.+.+-...-.  . .....++..++++++.|+ 
T Consensus        93 --------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  164 (302)
T 2xn4_A           93 --------ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGY  164 (302)
T ss_dssp             --------CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCE
T ss_pred             --------CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCC
Confidence                    111111112223334677777777654     57788887765433222  1 111122335667766665 


Q ss_pred             C-------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccCccccccceeeecc
Q 009373          310 G-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       310 d-------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                      +       ..+.+||+.+++-...-.......-.+++.. ++.+++.|+.+     ..+.+||+.+..-    ..+..+.
T Consensus       165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~~  239 (302)
T 2xn4_A          165 DVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW----RQVADMN  239 (302)
T ss_dssp             ETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE----EEECCCS
T ss_pred             CCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE----eeCCCCC
Confidence            2       3488999988764433211111111122222 56777777764     3688999876521    2222222


Q ss_pred             CCCCCeEEEEEcCCeEEEEeCCC-----cEEEEECCcc
Q 009373          378 PHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRKL  410 (536)
Q Consensus       378 ~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~~  410 (536)
                      .....-..+.+++..++.|+.++     .+.+||+.+.
T Consensus       240 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          240 MCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            11222234445666777777653     4888988763

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.74  E-value=0.029  Score=52.46  Aligned_cols=227  Identities=13%  Similarity=0.026  Sum_probs=118.0

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC---CCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK---PLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      ...+.+|.+.+ +..++ ++.++.|.. ..+.|+.-....   .+...+..+.  .++..+++ +.+|.|.  ....+- 
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~g~v~--~S~DgG-  151 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNVGAIY--RTKDSG-  151 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEE-ETTCCEE--EESSTT-
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEE-eCCccEE--EEcCCC-
Confidence            44688999986 44444 455665443 334454433322   1223344444  44444444 4456442  221110 


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEE-EeC--CCceEeEeeeccccEEEEe--ecCCEEE
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRV-WDR--ALLKCLKVLRHSDWVYGLA--PHDTTVA  306 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~i-wd~--~~~~~~~~~~~~~~v~~~~--~~~~~l~  306 (536)
                              ...  .....++...+..+.+ .++.++..+.+|.+.. +|-  .+.+.+. ......+..+.  +++.+++
T Consensus       152 --------~tW--~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~  220 (327)
T 2xbg_A          152 --------KNW--QALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWM  220 (327)
T ss_dssp             --------SSE--EEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEE
T ss_pred             --------CCC--EEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEE
Confidence                    111  1112234557888888 2334444445555444 342  2333321 12334555554  6777777


Q ss_pred             EecCCcEEEEeCCCCcEEEEEccc---cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          307 STSGSDVYIWDTNSGCLLTVVNGA---HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       307 ~~~d~~i~i~d~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      ++.+|.+++.+...++....+..+   ....+.++.+.+++.+++++. +|.+ ++....+.   ....+.........+
T Consensus       221 ~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~---tW~~~~~~~~~~~~~  295 (327)
T 2xbg_A          221 IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ---TWQQDVDVKKVPSNF  295 (327)
T ss_dssp             EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS---SCEECGGGTTSSSCC
T ss_pred             EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc---ccEEcCccCCCCCCe
Confidence            777888777653334433333212   223588999998877766654 6766 34444341   122222112234567


Q ss_pred             EEEEEc-CCeEEEEeCCCcEEEEEC
Q 009373          384 NSLAFE-FPWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       384 ~~l~~~-~~~l~s~s~dg~i~vwd~  407 (536)
                      .++.|. +..+++++.+|.|.-++-
T Consensus       296 ~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          296 YKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             CEEEEEETTEEEEECSTTEEEEECC
T ss_pred             EEEEEECCCceEEEcCCceEEEEcC
Confidence            888884 577888899998877664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.73  E-value=0.023  Score=52.52  Aligned_cols=230  Identities=12%  Similarity=-0.037  Sum_probs=126.9

Q ss_pred             cCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEecC-C--cEEEEeCCCCcEEEE
Q 009373          254 GPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSG-S--DVYIWDTNSGCLLTV  326 (536)
Q Consensus       254 ~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~d-~--~i~i~d~~~~~~~~~  326 (536)
                      .....+++  +++.+++-..++.|..||.... ....+........+.  ++++++++... .  .|..+|..+++....
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            45678888  4555555557899999998753 333444444566665  67887666542 2  477788888775433


Q ss_pred             EccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc--cceee--eccCCCCCeEEEEEcCCeEEEE-eCCCc
Q 009373          327 VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN--VLLVA--TWIPHTGPVNSLAFEFPWLVSA-AGDGK  401 (536)
Q Consensus       327 ~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~~~--~~~~h~~~v~~l~~~~~~l~s~-s~dg~  401 (536)
                      ...........++..+++..+++-..++.|.++|...+.....  .....  .....-...+.|..++.+|+.+ ...+.
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~  190 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  190 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCE
Confidence            3211222334555555555555555688899998764310000  00000  1111223455665556655554 45788


Q ss_pred             EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhh--HHHHHHhh
Q 009373          402 LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE--IERRARAL  479 (536)
Q Consensus       402 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~--~~~~~~~~  479 (536)
                      |.++++......   ..   ...+.         ......-++++.+++++++....+.|.+++.. +..  +.....  
T Consensus       191 I~~~~~~~~g~~---~~---~~~~~---------~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~--  252 (306)
T 2p4o_A          191 LLRIPVDSTDKP---GE---PEIFV---------EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ--  252 (306)
T ss_dssp             EEEEEBCTTSCB---CC---CEEEE---------ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG--
T ss_pred             EEEEEeCCCCCC---Cc---cEEEe---------ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc--
Confidence            999998641000   00   00000         01112234566677777777777889999865 432  111100  


Q ss_pred             hcccchhHHHhhhhccccc---cCCCCcceeEee
Q 009373          480 RGIRLENRMRRRKLQTEMS---SKGGRTDQCSVA  510 (536)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~  510 (536)
                              .-..+.+++|.   |+++.+.++...
T Consensus       253 --------~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          253 --------GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             --------TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             --------ccCCceEEEEecccCCCCEEEEECCC
Confidence                    01345788998   888888776553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.72  E-value=0.007  Score=55.92  Aligned_cols=188  Identities=13%  Similarity=0.085  Sum_probs=97.7

Q ss_pred             EEeCCEEEEEecC-----CeEEEEeCCCceEeEeee--c-cccEEEEeecCCEEEEec-C-----CcEEEEeCCCCcEEE
Q 009373          260 ALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCLLT  325 (536)
Q Consensus       260 ~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~  325 (536)
                      ..++..++.|+.+     ..+.+||..+.+-...-.  . ...-..+..++.+++.|+ +     ..+.+||+.+.+-..
T Consensus        59 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           59 YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            3466677777755     358889988765433222  1 111122335667666665 3     258899998876443


Q ss_pred             EEccccccceEEEEEeCCCCEEEEEcCC-------CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeC
Q 009373          326 VVNGAHVGNTKSLARSHTGDFLFTGGED-------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG  398 (536)
Q Consensus       326 ~~~~~~~~~i~~l~~~~~~~~l~tg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  398 (536)
                      .-.......-.+++. -++.+++.|+.+       ..+.+||+.+..-    ..+..+.........+.++..+++.|+.
T Consensus       139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~  213 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW----TYIAEMSTRRSGAGVGVLNNLLYAVGGH  213 (302)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE----EECCCCccccccccEEEECCEEEEECCC
Confidence            321111111112222 256677776643       3488899876521    2222222222223344556667777766


Q ss_pred             C-----CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCC-----eEEEEeCCc
Q 009373          399 D-----GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG-----IVRIWNFSQ  468 (536)
Q Consensus       399 d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg-----~i~vW~~~~  468 (536)
                      +     ..+.+||+.+..             +...........+|.    ....++..++.||.++     .|.+||+.+
T Consensus       214 ~~~~~~~~~~~yd~~~~~-------------W~~~~~~~~~r~~~~----~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          214 DGPLVRKSVEVYDPTTNA-------------WRQVADMNMCRRNAG----VCAVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             SSSSBCCCEEEEETTTTE-------------EEEECCCSSCCBSCE----EEEETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             CCCcccceEEEEeCCCCC-------------EeeCCCCCCccccCe----EEEECCEEEEECCcCCCcccccEEEEcCCC
Confidence            4     368888887631             111111111111222    2334566777787654     478888876


Q ss_pred             h
Q 009373          469 A  469 (536)
Q Consensus       469 ~  469 (536)
                      .
T Consensus       277 ~  277 (302)
T 2xn4_A          277 D  277 (302)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.71  E-value=0.067  Score=58.86  Aligned_cols=182  Identities=10%  Similarity=-0.046  Sum_probs=96.5

Q ss_pred             cccEEEEEEecC------CCEEEEEeC-CCcEEEEECCCCceeeeeCCC-CceE--EEEe-c-CCCEEEEEeCCCcEEEE
Q 009373          158 TEAVLTVFVLAS------AKLLFTSGY-DSIVRMWHLEDGFSIASSKPL-GCTI--RAVA-A-DKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       158 ~~~V~~v~~~~~------~~~l~sgs~-dg~v~iwd~~~~~~~~~~~~~-~~~v--~~~~-~-~~~~l~sg~~dg~i~vw  225 (536)
                      .+.|.|+++.|.      +++++.|.+ |++|+|+++.+.+.+....-. ....  ..+. . ...+|..|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      469999997 999999999876655432211 1111  2222 2 33578899999998777


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe----
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA----  299 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~----  299 (536)
                      .+....-.+.+        ....+.| ..++.-..+  .+..-+.+..++...++.-+ ++....--....+..++    
T Consensus       633 ~~d~~tg~l~d--------~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~s  702 (1158)
T 3ei3_A          633 GLNIETGLLSD--------RKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNS  702 (1158)
T ss_dssp             EECTTTCCEEE--------EEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECC
T ss_pred             EEcCCCCcccc--------ceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCc
Confidence            65432101110        1111222 234433333  23322223334444444433 22211111222333333    


Q ss_pred             -ecCCEEEEecCCcEEEEeCCCCc--EEEEEccccccceEEEEEeCCCCEEEEEc
Q 009373          300 -PHDTTVASTSGSDVYIWDTNSGC--LLTVVNGAHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       300 -~~~~~l~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                       ....-++..+++.++|..+....  .++++.  -...+..++++|..+.++.+.
T Consensus       703 e~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          703 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             SSSTTEEEEECSSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEE
T ss_pred             ccCCCcEEEEcCCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEE
Confidence             12445666666778888775432  333342  456788889998877655543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.70  E-value=0.0023  Score=66.47  Aligned_cols=229  Identities=7%  Similarity=-0.029  Sum_probs=120.7

Q ss_pred             EEEEEecCCCEEEEEeC-CCcEEEEECCCCceee--eeCCCC-ceEEEEecCCCEEEEEe-CC-----CcEEEEEcccCc
Q 009373          162 LTVFVLASAKLLFTSGY-DSIVRMWHLEDGFSIA--SSKPLG-CTIRAVAADKKLLVAGG-TD-----GFIHCWRAVEVL  231 (536)
Q Consensus       162 ~~v~~~~~~~~l~sgs~-dg~v~iwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~l~sg~-~d-----g~i~vwd~~~~~  231 (536)
                      .++++.+++.+++.|+. +..+.+||..+++-..  .+.... ....++.+++++++.|+ .+     ..+.+||..+..
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            35667788999999984 5689999988764322  222222 22334446899999998 44     568999987754


Q ss_pred             cceecccCcccccceEEe-----eCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccc---------cE
Q 009373          232 PHLFDISGSEKQNTQFRL-----WEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSD---------WV  295 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~---------~v  295 (536)
                      ........   ..+....     ..+.+.+..+.. ++..+ .......+..||..+........ ...         .-
T Consensus       326 W~~~~~~~---~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~-~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          326 WTSLPNAK---VNPMLTADKQGLYRSDNHAWLFGWKKGSVF-QAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             EEEETTSC---SGGGCCCCTTGGGTTTCSCCEEECGGGCEE-ECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             ceeCCCcc---ccccccccccceeecCCceEEEECCCCcEE-EecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            22110000   0000000     001122211111 22222 12223467888987765443332 111         12


Q ss_pred             EEEe---ecCCEEEEec-CC-----------cEEEEeCCCCcEEEEE--ccccccceEEEEEeCCCCEEEEEcCC-----
Q 009373          296 YGLA---PHDTTVASTS-GS-----------DVYIWDTNSGCLLTVV--NGAHVGNTKSLARSHTGDFLFTGGED-----  353 (536)
Q Consensus       296 ~~~~---~~~~~l~~~~-d~-----------~i~i~d~~~~~~~~~~--~~~~~~~i~~l~~~~~~~~l~tg~~d-----  353 (536)
                      .++.   .++++++.|+ ++           .+.+||..+.......  .......-.++...|++++++.|+.+     
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence            2332   3677777766 22           5788998887654432  11112222345667899999999864     


Q ss_pred             ------CcEEEEEcccCccccccceeeeccCCCCCeEEEEE--cCCeEEEEeC
Q 009373          354 ------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAG  398 (536)
Q Consensus       354 ------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~  398 (536)
                            ..+.+||..+..    ...+..+........+..+  ++..++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEcCCCCc----eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                  468999987752    1122222222222223334  5578888875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.68  E-value=0.015  Score=53.85  Aligned_cols=227  Identities=11%  Similarity=0.017  Sum_probs=115.0

Q ss_pred             CCEEEEEeCC--CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC----CeEEEEeCCCc
Q 009373          210 KKLLVAGGTD--GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD----MTVRVWDRALL  283 (536)
Q Consensus       210 ~~~l~sg~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d----g~i~iwd~~~~  283 (536)
                      +.+++.|+.+  ..+.+||..+..-...           ..+......-..+..++..++.|+.+    ..+.+||..+.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~-----------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~   80 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDI-----------RCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKD   80 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEEC-----------CCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecC-----------CCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCC
Confidence            3455666653  5688888876532111           01111111222333466777777755    67889998877


Q ss_pred             eEeEeee--c-cccEEEEeecCCEEEEec-C------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-
Q 009373          284 KCLKVLR--H-SDWVYGLAPHDTTVASTS-G------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-  352 (536)
Q Consensus       284 ~~~~~~~--~-~~~v~~~~~~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-  352 (536)
                      +-...-.  . ...-..+..++.+++.|+ +      ..+.+||+.+.+-...-.......-.+++. -++.+++.|+. 
T Consensus        81 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~  159 (306)
T 3ii7_A           81 SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSL  159 (306)
T ss_dssp             EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEE
T ss_pred             eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCC
Confidence            5433222  1 111122335667766665 3      359999999876443321111111112222 25666777654 


Q ss_pred             --------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCcccccCCCCCC
Q 009373          353 --------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRKLLRSGRPTSG  419 (536)
Q Consensus       353 --------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~  419 (536)
                              -..+.+||+.+..    ...+..+......-..+.+.+.+++.|+.+     ..+.+||+.+..        
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~--------  227 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATET----WTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE--------  227 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTE----EEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE--------
T ss_pred             CCCCcccccceEEEeCCCCCe----EEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc--------
Confidence                    3448899987762    122222222222223344455666666653     358888887631        


Q ss_pred             CceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCC-----CeEEEEeCCch
Q 009373          420 KRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEE-----GIVRIWNFSQA  469 (536)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~D-----g~i~vW~~~~~  469 (536)
                           +...........+|    .+...++..++.||.+     ..+.+||+.+.
T Consensus       228 -----W~~~~~~p~~r~~~----~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          228 -----WKMVSPMPWKGVTV----KCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             -----EEECCCCSCCBSCC----EEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             -----EEECCCCCCCccce----eEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence                 11111111111122    2233356677888754     45788888764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.61  E-value=0.054  Score=51.93  Aligned_cols=195  Identities=7%  Similarity=-0.074  Sum_probs=110.9

Q ss_pred             ccCEEEEEEe--CCEEE-EEecCCeEEEEeCCCceEeEeee-ccccE--EEEeecC-CEEEEec-CCcEEEEeCCCCcEE
Q 009373          253 EGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLR-HSDWV--YGLAPHD-TTVASTS-GSDVYIWDTNSGCLL  324 (536)
Q Consensus       253 ~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~-~~~~v--~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~  324 (536)
                      ......++|+  .+.|+ +-...+.|..+++........+. .....  .++.+.+ .++++-. .+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            4457788885  34554 44567889999987665433333 11122  3444444 4444444 578988888755433


Q ss_pred             EEEccccccceEEEEEeCCCCEEEEEc-CC-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CC
Q 009373          325 TVVNGAHVGNTKSLARSHTGDFLFTGG-ED-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GD  399 (536)
Q Consensus       325 ~~~~~~~~~~i~~l~~~~~~~~l~tg~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~d  399 (536)
                      ..+ .........++++|.+..|+... .. +.|..+++....      ............+.|++++  ..|+.+. ..
T Consensus       195 ~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          195 VLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred             Eee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence            333 23445688999998776555544 34 678888876541      1111122344578999974  5555554 46


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHH
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      +.|..+|+......          .         .+......-..++...+ .+++-...+.|..++..+|..+.
T Consensus       268 ~~I~~~d~dG~~~~----------~---------~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~  323 (386)
T 3v65_B          268 HVIERANLDGSHRK----------A---------VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQE  323 (386)
T ss_dssp             TEEEEECTTSCSCE----------E---------EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CEEEEEeCCCCeeE----------E---------EEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceE
Confidence            78999987641100          0         01101111223333344 66677778889888866665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.58  E-value=0.027  Score=52.29  Aligned_cols=188  Identities=12%  Similarity=0.170  Sum_probs=109.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEec----CCC---EEEEEe-C--CCcEEEEEcccCccceeccc
Q 009373          169 SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAA----DKK---LLVAGG-T--DGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~----~~~---~l~sg~-~--dg~i~vwd~~~~~~~~~~~~  238 (536)
                      ...+++.....+-+.+||+ +|+.+..+......-..+.+    .++   ++++.. .  +++|.+|++......+....
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            3456777777889999999 89998888653322223322    333   223333 3  57899997742211111110


Q ss_pred             CcccccceEEeeCCccCEEEEEE--e---CC-EEEEEecCCeEEEEeC-------CCceEeEeeeccccEEEEe--ecCC
Q 009373          239 GSEKQNTQFRLWEHEGPITSLAL--D---LT-RIYSGSWDMTVRVWDR-------ALLKCLKVLRHSDWVYGLA--PHDT  303 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~l~~--~---~~-~l~s~s~dg~i~iwd~-------~~~~~~~~~~~~~~v~~~~--~~~~  303 (536)
                      ...  .+   +..-...+..+++  +   +. +++....+|.+..|++       .+.+.+.++...+.+-.+.  +...
T Consensus       118 ~~~--~p---v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g  192 (355)
T 3amr_A          118 DPD--HP---IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYG  192 (355)
T ss_dssp             CTT--SC---EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred             ccc--cC---cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCC
Confidence            000  00   0001134445555  3   22 5788888999999988       2446667777555555554  4556


Q ss_pred             EEEEec-CCcEEEEeCC-----CCcEEEEEccccc-cceEEEEE--eCCCC-EEEEEc-CCCcEEEEEcc
Q 009373          304 TVASTS-GSDVYIWDTN-----SGCLLTVVNGAHV-GNTKSLAR--SHTGD-FLFTGG-EDGAIHMYEII  362 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~-----~~~~~~~~~~~~~-~~i~~l~~--~~~~~-~l~tg~-~dg~i~iwd~~  362 (536)
                      .|+.+. +..|..||.+     +++.+..+..++- ..+..|++  .++++ +|++++ .+.+..+||..
T Consensus       193 ~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          193 RLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            666666 6667778855     3455655532332 36788887  45555 565555 57789999985

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.58  E-value=0.0025  Score=67.30  Aligned_cols=192  Identities=13%  Similarity=0.033  Sum_probs=104.6

Q ss_pred             Cccc-cEEEEEEe-cCCCEEEEEeC-CC----cEEEEECCCC-ceeee-eCCCCceEEEEecCCCEEEEEeCC-----Cc
Q 009373          156 GHTE-AVLTVFVL-ASAKLLFTSGY-DS----IVRMWHLEDG-FSIAS-SKPLGCTIRAVAADKKLLVAGGTD-----GF  221 (536)
Q Consensus       156 ~h~~-~V~~v~~~-~~~~~l~sgs~-dg----~v~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~l~sg~~d-----g~  221 (536)
                      +|.- .+...+|| |||++||-+.. +|    +|+++|+.++ +.+.. +.. ...-..++||++.|+....+     ..
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~-~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG-TNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE-ECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC-ceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            3443 68889999 99998875432 33    5999999998 63211 110 01124577999887777665     25


Q ss_pred             EEEEEcccCccceecccCcccccceEEee-CCccCEEEEEE--eCCEEEEEec---CCeEEEEeCCCc--eE--eEeee-
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLAL--DLTRIYSGSW---DMTVRVWDRALL--KC--LKVLR-  290 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~s~s~---dg~i~iwd~~~~--~~--~~~~~-  290 (536)
                      |+++++.++..           .....+. ........+.|  ++++|+..+.   ...|.++|+.++  +.  ..... 
T Consensus       249 v~~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~  317 (751)
T 2xe4_A          249 VWRHVMGKLQS-----------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR  317 (751)
T ss_dssp             EEEEETTSCGG-----------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC
T ss_pred             EEEEECCCCch-----------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC
Confidence            77777755421           1111121 22234556677  7777766553   346888898775  22  22222 


Q ss_pred             ccccEEEEe-ecCCEEEEec--C----CcEEEEeCCCC-cEEE-EEccccccceEEEEEeCCCCEEEEEcCCCcEEEEE
Q 009373          291 HSDWVYGLA-PHDTTVASTS--G----SDVYIWDTNSG-CLLT-VVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       291 ~~~~v~~~~-~~~~~l~~~~--d----~~i~i~d~~~~-~~~~-~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd  360 (536)
                      ......++. ..+..|+..+  +    ..|..+|+.++ +... .+.......+..+.+. .+.++++...+|..++|-
T Consensus       318 ~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          318 EKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             CTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            334445555 4466554433  3    25777887653 2222 2321112244555554 234556666777655443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.57  E-value=0.011  Score=54.72  Aligned_cols=225  Identities=11%  Similarity=0.056  Sum_probs=114.9

Q ss_pred             CCCEEEEEeC----CCcEEEEECCCCceee--eeCCCCceEEEEecCCCEEEEEeC----C-----CcEEEEEcccCccc
Q 009373          169 SAKLLFTSGY----DSIVRMWHLEDGFSIA--SSKPLGCTIRAVAADKKLLVAGGT----D-----GFIHCWRAVEVLPH  233 (536)
Q Consensus       169 ~~~~l~sgs~----dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~sg~~----d-----g~i~vwd~~~~~~~  233 (536)
                      ++.+++.|+.    -..+.+||..+.+-..  .+............++.+++.|+.    +     ..+.+||+.+..-.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            4556666663    2468889987764322  111111111222346777777776    2     45788887665311


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecC-----CeEEEEeCCCceEeEeee--c-cccEEEEeecCCEE
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD-----MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTV  305 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l  305 (536)
                      ..           ..+......-....+++..++.|+.+     ..+.+||..+.+-...-.  . ...-.++..++.++
T Consensus       104 ~~-----------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy  172 (308)
T 1zgk_A          104 PC-----------APMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY  172 (308)
T ss_dssp             EC-----------CCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred             EC-----------CCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence            11           01111111222333466667776644     368889988765433222  1 11112223566776


Q ss_pred             EEec-C-----CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccCccccccceee
Q 009373          306 ASTS-G-----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       306 ~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~  374 (536)
                      +.|+ +     ..+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+     ..+.+||+.+..    ...+.
T Consensus       173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~  247 (308)
T 1zgk_A          173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET----WTFVA  247 (308)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE----EEECC
T ss_pred             EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc----EEECC
Confidence            6665 3     4589999988754332111111111122222 56777777764     458999987762    12222


Q ss_pred             eccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCc
Q 009373          375 TWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRK  409 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~  409 (536)
                      .+.........+.+.+.+++.|+.+     ..+.+||+.+
T Consensus       248 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          248 PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCC
Confidence            2222222223444556667777654     3577888765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.51  E-value=0.066  Score=50.47  Aligned_cols=194  Identities=8%  Similarity=-0.070  Sum_probs=109.5

Q ss_pred             ccCEEEEEEe--CCEEEE-EecCCeEEEEeCCCceEeEeee-ccccEEEE--eec-CCEEEEec-CCcEEEEeCCCCcEE
Q 009373          253 EGPITSLALD--LTRIYS-GSWDMTVRVWDRALLKCLKVLR-HSDWVYGL--APH-DTTVASTS-GSDVYIWDTNSGCLL  324 (536)
Q Consensus       253 ~~~v~~l~~~--~~~l~s-~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~--~~~-~~~l~~~~-d~~i~i~d~~~~~~~  324 (536)
                      ......++|+  .+.|+. -...+.|..+++........+. .......+  .+. +.++++-. .+.|.+.++......
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  151 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  151 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE
Confidence            3457788884  345554 4467889999987665433332 11223344  444 44445544 678999998755433


Q ss_pred             EEEccccccceEEEEEeCCCCEEE-EEcCC-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CC
Q 009373          325 TVVNGAHVGNTKSLARSHTGDFLF-TGGED-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GD  399 (536)
Q Consensus       325 ~~~~~~~~~~i~~l~~~~~~~~l~-tg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~d  399 (536)
                      ..+ .........++++|.+..|+ +-... +.|..+++....      ........-...+.|++++  ..|+.+. ..
T Consensus       152 ~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          152 VLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG------RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             EEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------CEESCCSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC------cEEEEECCCCCcceEEEeCCCCEEEEEECCC
Confidence            333 23445678999999665554 44444 778888876541      1111122344578999985  5565554 46


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEe-cCCEEEEecCCCeEEEEeCCchhhH
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI-GADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      +.|..+|+......          .         .+......-..++. .+..+++-...+.|...+..+|...
T Consensus       225 ~~I~~~~~dG~~~~----------~---------~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~  279 (349)
T 3v64_C          225 HVIERANLDGSHRK----------A---------VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ  279 (349)
T ss_dssp             TEEEEEETTSCSCE----------E---------EECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CEEEEEeCCCCceE----------E---------EEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCcc
Confidence            78999987642100          0         00000111123333 3346666667788888886666544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.51  E-value=0.022  Score=52.64  Aligned_cols=188  Identities=9%  Similarity=-0.012  Sum_probs=96.3

Q ss_pred             ecCCCEEEEEeCC----CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEec----C-----C
Q 009373          207 AADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW----D-----M  273 (536)
Q Consensus       207 ~~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~----d-----g  273 (536)
                      ..++.+++.|+.+    ..+.+||..+..-...  .         .+......-..+..++..++.|+.    +     .
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~--~---------~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~   90 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL--A---------DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSS   90 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEEC--C---------CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECC
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC--C---------CCCcccccceEEEECCEEEEECCCcCCCCCCeecc
Confidence            3556677777642    4578888766532111  0         010011111222336666667665    2     4


Q ss_pred             eEEEEeCCCceEeEeee---ccccEEEEeecCCEEEEec-C-----CcEEEEeCCCCcEEEEEccccccceEEEEEeCCC
Q 009373          274 TVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTG  344 (536)
Q Consensus       274 ~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~  344 (536)
                      .+.+||..+.+-...-.   ....-..+..++++++.|+ +     ..+.+||+.+.+-...-.......-.+++.. ++
T Consensus        91 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~  169 (308)
T 1zgk_A           91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NR  169 (308)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT
T ss_pred             eEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CC
Confidence            68889988765433221   1111222335677777665 2     4689999988754332111111111122222 56


Q ss_pred             CEEEEEcCC-----CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCC-----CcEEEEECCcc
Q 009373          345 DFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGD-----GKLSLIDVRKL  410 (536)
Q Consensus       345 ~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~  410 (536)
                      .+++.|+.+     ..+.+||+.+..-    ..+..+......-.++.++..+++.|+.+     ..+.+||+.+.
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence            777777654     4588999876521    12222222222223444556667777654     46889998763

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.50  E-value=4.3e-05  Score=72.32  Aligned_cols=43  Identities=40%  Similarity=0.502  Sum_probs=40.7

Q ss_pred             ccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHH
Q 009373           64 ITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKE  106 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~  106 (536)
                      +..||+|++.+||+||+..++.++++|||+|+.++.+..+|+.
T Consensus         9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~   51 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT   51 (336)
T ss_dssp             SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSE
T ss_pred             hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhee
Confidence            7899999999999999999999999999999999988888875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.47  E-value=0.074  Score=50.14  Aligned_cols=230  Identities=10%  Similarity=-0.058  Sum_probs=126.4

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCcccee
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      .+..+|.+..++. +|+.+ ....|+..++.............. .-+++.+.++.| ++-...+.|..+++.....   
T Consensus        33 ~d~~~C~~~~~~~-~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~---  107 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV---  107 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC---
T ss_pred             CCCCcccccccCc-eeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc---
Confidence            3445666666644 34333 335688888876554443333322 234555554544 4445678888888765421   


Q ss_pred             cccCcccccceEEeeCCccCEEEEEEe--CCEE-EEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLALD--LTRI-YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS  309 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~  309 (536)
                                .............++++  ++.| ++-...+.|.+.++........+. .-.....++  |.+..++.+.
T Consensus       108 ----------~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          108 ----------EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             ----------EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             ----------eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEec
Confidence                      11111112234556663  4444 555567889999987543333232 223345554  5455444443


Q ss_pred             --C-CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEE-EcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373          310 --G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  385 (536)
Q Consensus       310 --d-~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  385 (536)
                        . +.|..+++..... ..+........+.++++|++..|.. -+..+.|..+|+....      ....+........+
T Consensus       178 ~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~------~~~~~~~~~~~P~g  250 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH------RKAVISQGLPHPFA  250 (349)
T ss_dssp             CSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------CEEEECSSCSSEEE
T ss_pred             cCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc------eEEEEeCCCCCceE
Confidence              4 6788888765432 2332223446789999987665554 4556789999986542      11112223445677


Q ss_pred             EEEcCCeEEEEe-CCCcEEEEECCc
Q 009373          386 LAFEFPWLVSAA-GDGKLSLIDVRK  409 (536)
Q Consensus       386 l~~~~~~l~s~s-~dg~i~vwd~~~  409 (536)
                      |++..+.|+.+. ..+.|..+|..+
T Consensus       251 iav~~~~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          251 ITVFEDSLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             EEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCEEEEecCCCCeEEEEEccC
Confidence            777666555554 467787777544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.46  E-value=0.054  Score=48.18  Aligned_cols=198  Identities=11%  Similarity=0.059  Sum_probs=118.4

Q ss_pred             eeeeCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCC---CCceEEEEecCCCEEEEEeCCCcEEEEEc
Q 009373          152 DVLYGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKP---LGCTIRAVAADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~sg~~dg~i~vwd~  227 (536)
                      +.+.|-.+.+..++|+|++. ++++...++.|...|.. ++.+..+.-   ....-.++..++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            46667777899999999766 45557778999999988 887777632   22233344466766666667788888887


Q ss_pred             ccCccceecccCcccccceEEe----eCCccCEEEEEEe--CCEEEEEecCCeEEEEeCC---CceEeEeee--------
Q 009373          228 VEVLPHLFDISGSEKQNTQFRL----WEHEGPITSLALD--LTRIYSGSWDMTVRVWDRA---LLKCLKVLR--------  290 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~--~~~l~s~s~dg~i~iwd~~---~~~~~~~~~--------  290 (536)
                      ..... +..       .....+    .........++++  ++.|+++.......+|.+.   ....+..+.        
T Consensus        99 ~~~~~-i~~-------~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~  170 (255)
T 3qqz_A           99 TPNSE-VKI-------LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF  170 (255)
T ss_dssp             CTTCC-EEE-------EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred             CCCCe-eee-------eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence            65431 000       000111    1235567899994  4577777766555555543   111122221        


Q ss_pred             ccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEcc--cc------ccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          291 HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNG--AH------VGNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       291 ~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~--~~------~~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                      ....+.+++  |. +++++.+. +..+..+|.. ++.+..+.-  +.      ..+...|+|.++|++.++ ++...+++
T Consensus       171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~  248 (255)
T 3qqz_A          171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYR  248 (255)
T ss_dssp             CSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEE
T ss_pred             ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEE
Confidence            111233444  43 44555555 5778999976 555555432  21      126789999999985555 66666666


Q ss_pred             EE
Q 009373          359 YE  360 (536)
Q Consensus       359 wd  360 (536)
                      |.
T Consensus       249 f~  250 (255)
T 3qqz_A          249 FT  250 (255)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.45  E-value=0.042  Score=50.92  Aligned_cols=220  Identities=10%  Similarity=0.022  Sum_probs=112.4

Q ss_pred             EEEEEeCCCcEEEEECCCCceee-eeCC--CCceEEEEecCCCEEEEEeC----C-------CcEEEEEcccCccceecc
Q 009373          172 LLFTSGYDSIVRMWHLEDGFSIA-SSKP--LGCTIRAVAADKKLLVAGGT----D-------GFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       172 ~l~sgs~dg~v~iwd~~~~~~~~-~~~~--~~~~v~~~~~~~~~l~sg~~----d-------g~i~vwd~~~~~~~~~~~  237 (536)
                      +++.|+  ..+.+||..+++-.. .+..  ..........++.+++.|+.    +       ..+.+||..+..-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~--   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM--   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC--
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC--
Confidence            344555  578899998876332 2211  22233344467888888884    1       1267777766531110  


Q ss_pred             cCcccccceEEeeCCccCEEEEEEeCCEEEEEecC--------CeEEEEeCCCceEeEeee--c-cccEEEEeecCCEEE
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD--------MTVRVWDRALLKCLKVLR--H-SDWVYGLAPHDTTVA  306 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~--~-~~~v~~~~~~~~~l~  306 (536)
                               ..+......-....+++..++.|+.+        ..+.+||..+.+-...-.  . ...-.++..++++++
T Consensus        83 ---------~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv  153 (315)
T 4asc_A           83 ---------PPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV  153 (315)
T ss_dssp             ---------CCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEE
T ss_pred             ---------CCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEE
Confidence                     00111111112223366666677643        458899988765332211  1 111223336666666


Q ss_pred             EecC-------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-----cEEEEEcccCccccccceee
Q 009373          307 STSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVA  374 (536)
Q Consensus       307 ~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~  374 (536)
                      .|+.       ..+.+||+.+.+-...-.......-.+++. -++++++.|+.++     .+.+||+.+..    ...+.
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~  228 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK----WAPFE  228 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE----EEEEC
T ss_pred             EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe----EEECC
Confidence            6652       359999998875433211111111112222 2567777777654     47888887652    12222


Q ss_pred             eccCCCCCeEEEEEcCCeEEEEeCCC--------------cEEEEECCc
Q 009373          375 TWIPHTGPVNSLAFEFPWLVSAAGDG--------------KLSLIDVRK  409 (536)
Q Consensus       375 ~~~~h~~~v~~l~~~~~~l~s~s~dg--------------~i~vwd~~~  409 (536)
                      .+.........+.+.+..++.|+.++              .+.+||+.+
T Consensus       229 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          229 AFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             CCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred             CCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence            22222223344455666777777532              366778765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.45  E-value=0.081  Score=50.67  Aligned_cols=192  Identities=10%  Similarity=0.003  Sum_probs=110.3

Q ss_pred             cccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeeeCC--CCceEEEEecCC-CEEEEEeCCCcEEEEEcccCccc
Q 009373          158 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADK-KLLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       158 ~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      ...+..++|++.+. ++++-...+.|..+++..+.....+..  ....-+++.+.+ .++++-...+.|.+.++....  
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--  192 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--  192 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--
Confidence            34578899997554 555555678899999886653332221  122234566544 444555556777777764331  


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEe-cC-CeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEE
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGS-WD-MTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA  306 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~d-g~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~  306 (536)
                                 ....+.........++++  +..|+.+. .. +.|..+++.......... .-.....++  +++..|+
T Consensus       193 -----------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY  261 (386)
T 3v65_B          193 -----------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMY  261 (386)
T ss_dssp             -----------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEE
T ss_pred             -----------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEE
Confidence                       111122233456788885  45555444 33 678888876433322222 222345555  4555554


Q ss_pred             Ee-c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          307 ST-S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       307 ~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .+ . .+.|..+|+........+. ........+++ ..+.++++-...+.|..++..++
T Consensus       262 ~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          262 WVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence            44 4 5789999987544333332 23445677888 34566677777888888886555

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.43  E-value=0.088  Score=50.00  Aligned_cols=188  Identities=16%  Similarity=0.205  Sum_probs=123.6

Q ss_pred             CCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEecCCcEEEEeCCCC-cEEEEEcccc----ccceEEEEEeCCCC
Q 009373          272 DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTGD  345 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~-~~~~~~~~~~----~~~i~~l~~~~~~~  345 (536)
                      ..++.++|+++.+.++.+.....|.-.. -+.+.|+..++..|+.|++... .+...+.. |    ...|..-..+++.+
T Consensus        85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR-~~~L~~~QIInY~~d~~~k  163 (494)
T 1bpo_A           85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQK  163 (494)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTSS
T ss_pred             CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEcCCeeEEecccCCCCchhheec-chhcccceEEEEEECCCCC
Confidence            6899999999999999988767777676 6788999999999999999753 45555532 3    34677788889999


Q ss_pred             EEEEEcC-------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-----CeEEEEeCC---CcEEEEECCcc
Q 009373          346 FLFTGGE-------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAAGD---GKLSLIDVRKL  410 (536)
Q Consensus       346 ~l~tg~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s~d---g~i~vwd~~~~  410 (536)
                      +++..+-       .|.+.+|.....       ..+.+.||.+.-..+..++     ..++.+...   ++++|-++...
T Consensus       164 W~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~  236 (494)
T 1bpo_A          164 WLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (494)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred             eEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence            8775432       467889987665       4566788887777777754     244444443   78999998653


Q ss_pred             cccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHH
Q 009373          411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      .... ....++...+.  .++    .....--.++..+..  .+..-..-|.|++||++++..+..
T Consensus       237 ~~~~-~~f~kk~vdv~--fpp----e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~  295 (494)
T 1bpo_A          237 PTGN-QPFPKKAVDVF--FPP----EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (494)
T ss_dssp             CTTC-CCCCCEEEECC--CCT----TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccCC-CCccceeeeee--CCc----ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeee
Confidence            1111 11111111110  111    011111234444444  666667789999999999987653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.39  E-value=0.085  Score=51.36  Aligned_cols=145  Identities=7%  Similarity=-0.038  Sum_probs=85.2

Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecC-C----e
Q 009373          203 IRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWD-M----T  274 (536)
Q Consensus       203 v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~d-g----~  274 (536)
                      -+++.| ++..|+++...+.|..+|+.++.              +..+.........+++  +++.|+.+... +    .
T Consensus       141 ~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--------------v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~  206 (430)
T 3tc9_A          141 WLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--------------VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPN  206 (430)
T ss_dssp             EEEEETTEEEEEEEEEBTEEEEEEETTTTE--------------EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred             EEEECCCCCCeEEEEeCCCcEEEEECCCCE--------------EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccce
Confidence            345666 35566666655778888875542              2223334456778888  56656655542 1    3


Q ss_pred             EEEEeCCCceEe--Eeee---ccccEEEEee-cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-E
Q 009373          275 VRVWDRALLKCL--KVLR---HSDWVYGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-F  346 (536)
Q Consensus       275 i~iwd~~~~~~~--~~~~---~~~~v~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~  346 (536)
                      +...+. .+...  ..+.   +... .++.+ ++.++++-. ++.|..+|...+........+.......++++|+|+ +
T Consensus       207 v~~~~~-~g~~~~~~~l~~~~~p~g-iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          207 NYILTR-ESGFKVITELTKGQNCNG-AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             EEEEEG-GGTSCSEEEEEECSSCCC-EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             EEEEeC-CCceeeeeeeccCCCceE-EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            443443 22211  2222   2222 23456 667666665 688999999877653333222234578999999999 4


Q ss_pred             EEEEcCCCcEEEEEccc
Q 009373          347 LFTGGEDGAIHMYEIIN  363 (536)
Q Consensus       347 l~tg~~dg~i~iwd~~~  363 (536)
                      +++-...+.|..++...
T Consensus       285 yv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             EEEETTTTEEEEEEEET
T ss_pred             EEEECCCCEEEEEeCCc
Confidence            55556678899988764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.27  E-value=0.12  Score=47.96  Aligned_cols=194  Identities=9%  Similarity=-0.010  Sum_probs=110.1

Q ss_pred             cCEEEEEEe--CCEE-EEEecCCeEEEEeCCCceEeE-eee-ccccEEEE--eec-CCEEEEec-CCcEEEEeCCCCcEE
Q 009373          254 GPITSLALD--LTRI-YSGSWDMTVRVWDRALLKCLK-VLR-HSDWVYGL--APH-DTTVASTS-GSDVYIWDTNSGCLL  324 (536)
Q Consensus       254 ~~v~~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~-~~~-~~~~v~~~--~~~-~~~l~~~~-d~~i~i~d~~~~~~~  324 (536)
                      .....++|+  .+.| ++-...+.|..+++....... .+. .-.....+  .+. +.++++-. .+.|.++++......
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            346678884  3444 454567889999987653211 122 11223334  443 44445544 678999998754433


Q ss_pred             EEEccccccceEEEEEeCCCCEEEEEc--CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CC
Q 009373          325 TVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GD  399 (536)
Q Consensus       325 ~~~~~~~~~~i~~l~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~d  399 (536)
                      ..+ .........++++|.+..|+...  ..+.|...++....      ........-...+.|++++  ..|+.+. ..
T Consensus       115 ~l~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          115 VLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS------RFIIINSEIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             EEE-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS------CEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEE-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC------eEEEEECCCCCccEEEEeccCCEEEEEECCC
Confidence            323 23445678999999766655554  35778888876431      1111112234568999985  5666554 46


Q ss_pred             CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHH
Q 009373          400 GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       400 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      +.|..+|+.....          ..         ...+....-..++.+.+ .+++-...+.|..++..+|....
T Consensus       188 ~~I~~~d~dG~~~----------~~---------~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          188 NFIHKSNLDGTNR----------QA---------VVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             TEEEEEETTSCSC----------EE---------EECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             CEEEEEcCCCCce----------EE---------EecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceE
Confidence            7899999863110          00         01111112234444444 56666678889999987776543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.26  E-value=0.15  Score=49.04  Aligned_cols=219  Identities=13%  Similarity=-0.011  Sum_probs=123.9

Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEE-ecCCeEEEEeCCCce----EeEeee
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSG-SWDMTVRVWDRALLK----CLKVLR  290 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~----~~~~~~  290 (536)
                      ....|+..++....              ...+......+..++|+  .+.|+.+ ...+.|..+++....    ....+.
T Consensus        90 ~~~~I~~i~l~~~~--------------~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~  155 (400)
T 3p5b_L           90 NRHEVRKMTLDRSE--------------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS  155 (400)
T ss_dssp             ETTEEEEECTTSCS--------------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC
T ss_pred             ccceeEEEccCCcc--------------eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe
Confidence            34677777775432              11223345677889995  4555544 456888888886522    222222


Q ss_pred             -ccccEEEEe--e-cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC--CCcEEEEEccc
Q 009373          291 -HSDWVYGLA--P-HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE--DGAIHMYEIIN  363 (536)
Q Consensus       291 -~~~~v~~~~--~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~--dg~i~iwd~~~  363 (536)
                       .......++  + .++++++-. .+.|.+.++........+. ........++++|.+..|+....  .+.|...++..
T Consensus       156 ~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          156 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence             223344554  4 344555544 6889999988665444443 24456889999997666555442  36788888765


Q ss_pred             CccccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          364 DCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       364 ~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                      ..      ........-...+.|++++  ..|+.+. ..+.|..+|+.....          ..+...       .+.-.
T Consensus       235 ~~------~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~----------~~~~~~-------~~~l~  291 (400)
T 3p5b_L          235 VD------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----------KTILED-------EKRLA  291 (400)
T ss_dssp             CS------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC----------EEEEEC-------SSTTS
T ss_pred             Cc------cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc----------EEEEeC-------CCCCC
Confidence            42      1111223335678999985  5666665 457899998864211          001000       00111


Q ss_pred             cEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHH
Q 009373          441 NLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       441 ~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      .-.+++..++ .+++-...+.|..++..+|..+..
T Consensus       292 ~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             SEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             CCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEE
Confidence            2234444455 666767778899999777765543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.20  E-value=0.09  Score=48.73  Aligned_cols=213  Identities=9%  Similarity=0.033  Sum_probs=106.6

Q ss_pred             cEEEEECCCCceee-eeC--CCCceEEEEecCCCEEEEEeC----CC-------cEEEEEcccCccceecccCcccccce
Q 009373          181 IVRMWHLEDGFSIA-SSK--PLGCTIRAVAADKKLLVAGGT----DG-------FIHCWRAVEVLPHLFDISGSEKQNTQ  246 (536)
Q Consensus       181 ~v~iwd~~~~~~~~-~~~--~~~~~v~~~~~~~~~l~sg~~----dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~  246 (536)
                      .+..||..+++-.. ...  ...........++.+++.|+.    ++       .+.+||..+..-...           
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~-----------   93 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGL-----------   93 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEEC-----------
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEEC-----------
Confidence            37888988775433 111  112223334467788888873    12       166777765431110           


Q ss_pred             EEeeCCccCEEEEEEeCCEEEEEecC-------CeEEEEeCCCceEeEeeeccc---cEEEEeecCCEEEEec-C-----
Q 009373          247 FRLWEHEGPITSLALDLTRIYSGSWD-------MTVRVWDRALLKCLKVLRHSD---WVYGLAPHDTTVASTS-G-----  310 (536)
Q Consensus       247 ~~~~~h~~~v~~l~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d-----  310 (536)
                      ..+......-....+++..++.|+.+       ..+.+||..+.+-...-....   .-.++..++.+++.|+ +     
T Consensus        94 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A           94 PPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             SCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCB
T ss_pred             CCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCc
Confidence            01111111122233466777777764       357888988765433222111   1122236677766665 1     


Q ss_pred             -CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC-----cEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          311 -SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG-----AIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       311 -~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                       ..+.+||+.+.+-...-.......-.+++.. ++.+++.|+.++     .+.+||+.+..    ...+..+........
T Consensus       174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~~~  248 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK----WEVMTEFPQERSSIS  248 (318)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC----EEECCCCSSCCBSCE
T ss_pred             cceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe----EEECCCCCCcccceE
Confidence             3599999998764433211111111122222 567777776542     47788887652    122222222222223


Q ss_pred             EEEEcCCeEEEEeCC--------------CcEEEEECCc
Q 009373          385 SLAFEFPWLVSAAGD--------------GKLSLIDVRK  409 (536)
Q Consensus       385 ~l~~~~~~l~s~s~d--------------g~i~vwd~~~  409 (536)
                      .+.+.+.+++.|+.+              ..+.+||+.+
T Consensus       249 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          249 LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             EEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             EEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence            444556666666654              3467777765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.10  E-value=0.068  Score=50.70  Aligned_cols=154  Identities=13%  Similarity=0.196  Sum_probs=98.1

Q ss_pred             EeecCCEEEEecCCcEEEEeCCCCcEEEEEcccc---ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc-----
Q 009373          298 LAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH---VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN-----  369 (536)
Q Consensus       298 ~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-----  369 (536)
                      ++.++.-++.+.++.||.-++..+...+.+...+   ...|..+..+|+|.+||..+. ..|.|-.+..+.....     
T Consensus        28 ~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           28 SSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             EETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred             EEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence            3466777777778888888887554455554332   236788999999999998864 5799999874321111     


Q ss_pred             -cceeeeccC------CCCCeEEEEEcC-----CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee--ee
Q 009373          370 -VLLVATWIP------HTGPVNSLAFEF-----PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR--ML  435 (536)
Q Consensus       370 -~~~~~~~~~------h~~~v~~l~~~~-----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  435 (536)
                       ......+.-      ...+|..+.|+|     ..|++-..|+.|++||+......  +.      .+   .....  .+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~--P~------~L---~k~~~~fg~  175 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEK--PI------VL---NKPNNSFGL  175 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSC--CE------EE---SCCCSEEES
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCC--Cc------ch---hccccccCC
Confidence             011112211      357899999987     68999999999999999862110  00      00   11111  11


Q ss_pred             ccccccEEEEEecCC----EEEEecCCCeEEE
Q 009373          436 HGFECNLLSVDIGAD----RIVCGGEEGIVRI  463 (536)
Q Consensus       436 ~~~~~~v~~~~~~~~----~l~sg~~Dg~i~v  463 (536)
                      ......+.+++|+++    |+++....|-|+-
T Consensus       176 d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          176 DARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             CSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             CcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            223356777888776    6677778888865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.08  E-value=0.18  Score=46.64  Aligned_cols=216  Identities=13%  Similarity=-0.018  Sum_probs=118.1

Q ss_pred             CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEE-ecCCeEEEEeCCC----ceEeEeee-c
Q 009373          220 GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSG-SWDMTVRVWDRAL----LKCLKVLR-H  291 (536)
Q Consensus       220 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~----~~~~~~~~-~  291 (536)
                      ..|+..|+.+..             .. .+.........++|+  ++.|+.+ ..++.|..+++..    ......+. .
T Consensus        10 ~~I~~i~~~~~~-------------~~-~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~   75 (316)
T 1ijq_A           10 HEVRKMTLDRSE-------------YT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD   75 (316)
T ss_dssp             SSEEEEETTSCC-------------CE-EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             CeEEEEECCCcc-------------eE-ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence            467888876542             11 122234567788884  3455544 4568999999875    22222222 1


Q ss_pred             cccEEEEe--ecC-CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-C-CcEEEEEcccCc
Q 009373          292 SDWVYGLA--PHD-TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-D-GAIHMYEIINDC  365 (536)
Q Consensus       292 ~~~v~~~~--~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-d-g~i~iwd~~~~~  365 (536)
                      ......++  +.+ +++++-. .+.|.++|+........+. ........++++|.+..|+.+.. . +.|..+++....
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~  154 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence            12334444  434 4444544 6889999987554333332 23456789999997665554443 3 678888875431


Q ss_pred             cccccceeeeccCCCCCeEEEEEcC--CeEEEEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccE
Q 009373          366 TEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL  442 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  442 (536)
                      .    ..+  ....-...+.|++++  ..|+.+. ..+.|..+|+.....          ..+....       +....-
T Consensus       155 ~----~~~--~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----------~~~~~~~-------~~~~~P  211 (316)
T 1ijq_A          155 I----YSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----------KTILEDE-------KRLAHP  211 (316)
T ss_dssp             E----EEE--ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------EEEEECT-------TTTSSE
T ss_pred             e----EEE--EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----------EEEeecC-------CccCCc
Confidence            1    111  112345678999985  5666555 457899999864110          0010000       001112


Q ss_pred             EEEEecCC-EEEEecCCCeEEEEeCCchhhHH
Q 009373          443 LSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       443 ~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      ..++.+++ .+++-...+.|..++..++..+.
T Consensus       212 ~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          212 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEEEEECCEEEEEECCCCeEEEEeCCCCcceE
Confidence            23333344 66666778889999987776544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.05  E-value=0.15  Score=45.24  Aligned_cols=161  Identities=11%  Similarity=0.082  Sum_probs=100.6

Q ss_pred             EeeCCccCEEEEEEe--CCEEE-EEecCCeEEEEeCCCceEeEeeecc--ccEEEEe--ecCCEEEEec-CCcEEEEeCC
Q 009373          248 RLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLRHS--DWVYGLA--PHDTTVASTS-GSDVYIWDTN  319 (536)
Q Consensus       248 ~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~--~~~~~l~~~~-d~~i~i~d~~  319 (536)
                      .+.+-.+.+..++++  ++.|+ +...++.|...|.. ++.+..+...  ...-.++  .++.++++.. ++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            345666789999995  45555 46778899999997 8887777522  3444454  5666656554 6789999876


Q ss_pred             CCcE---EEEEcc-----ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeee----ccCCCCCeEEEE
Q 009373          320 SGCL---LTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVAT----WIPHTGPVNSLA  387 (536)
Q Consensus       320 ~~~~---~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~h~~~v~~l~  387 (536)
                      ....   +.....     ........++++|.++.|+++.+.....+|.+..............    -..+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5442   222211     1334568999999998888887776677777652100001111100    012344678999


Q ss_pred             EcC---CeEEEEeCCCcEEEEECCc
Q 009373          388 FEF---PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       388 ~~~---~~l~s~s~dg~i~vwd~~~  409 (536)
                      ++|   .+++.......|.++|...
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g  204 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVG  204 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCC
Confidence            987   3555556667788888764

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.05  E-value=0.24  Score=48.11  Aligned_cols=188  Identities=13%  Similarity=0.111  Sum_probs=103.4

Q ss_pred             cEEEEEEecC--CCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEEEEeCCC----c-EEEEEcccCc
Q 009373          160 AVLTVFVLAS--AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAGGTDG----F-IHCWRAVEVL  231 (536)
Q Consensus       160 ~V~~v~~~~~--~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg~~dg----~-i~vwd~~~~~  231 (536)
                      ....|+++|+  +..|+.+...+.|+.++..++.......... ..-+++.++++ |+.+...+    . +...+...+ 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~-  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG-  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT-
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC-
Confidence            4568899984  3445555444899999998776655443222 33456678888 44444322    1 222222111 


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEEe--CCEEE-EEecCCeEEEEeCCCceEeEee-e--ccccE--EEEeecCC
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVL-R--HSDWV--YGLAPHDT  303 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~-~--~~~~v--~~~~~~~~  303 (536)
                                 ......+. .......++++  ...|+ +-..++.|+.+|..++.....+ .  ....-  .++.++++
T Consensus       218 -----------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~  285 (433)
T 4hw6_A          218 -----------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD  285 (433)
T ss_dssp             -----------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred             -----------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence                       00001111 12223445663  34444 4446788999999877653222 2  11122  45558888


Q ss_pred             EEEEec--CCcEEEEeCC--CCcE--EEEEcc-----c---------cccceEEEEE---------eCCCCEEEEEcCCC
Q 009373          304 TVASTS--GSDVYIWDTN--SGCL--LTVVNG-----A---------HVGNTKSLAR---------SHTGDFLFTGGEDG  354 (536)
Q Consensus       304 ~l~~~~--d~~i~i~d~~--~~~~--~~~~~~-----~---------~~~~i~~l~~---------~~~~~~l~tg~~dg  354 (536)
                      .|+.+.  .+.|+.++..  ++..  ...+..     +         .-.....+++         .++|.+.++-...+
T Consensus       286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence            554444  5789998765  3321  112110     0         1124677898         77777777777788


Q ss_pred             cEEEEEc
Q 009373          355 AIHMYEI  361 (536)
Q Consensus       355 ~i~iwd~  361 (536)
                      .|+.++.
T Consensus       366 ~I~~~~~  372 (433)
T 4hw6_A          366 TVRVLTP  372 (433)
T ss_dssp             EEEEECT
T ss_pred             EEEEECC
Confidence            8999984

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.01  E-value=0.21  Score=46.19  Aligned_cols=217  Identities=11%  Similarity=-0.058  Sum_probs=119.4

Q ss_pred             CcEEEEECCCCceeeeeCCCCc-eEEEEecCCC-EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEE
Q 009373          180 SIVRMWHLEDGFSIASSKPLGC-TIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  257 (536)
Q Consensus       180 g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  257 (536)
                      ..|+..|+.+.+....+..... .-.++.+.++ ++++-..++.|..+++.+...      +   ......+........
T Consensus        10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~------~---~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------V---SSYDTVISRDIQAPD   80 (316)
T ss_dssp             SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCCC
T ss_pred             CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC------C---cccEEEEeCCCCCcC
Confidence            5688889887765544433222 2344555554 445555568898888764100      0   001111211223345


Q ss_pred             EEEEe--CCEE-EEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEE-EEec-C-CcEEEEeCCCCcEEEEEc
Q 009373          258 SLALD--LTRI-YSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTV-ASTS-G-SDVYIWDTNSGCLLTVVN  328 (536)
Q Consensus       258 ~l~~~--~~~l-~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l-~~~~-d-~~i~i~d~~~~~~~~~~~  328 (536)
                      .++++  ++.| ++-...+.|.+.|+........+. .......++  |.+..+ ++.. . +.|..+++... ....+.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLV  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEE
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEE
Confidence            66763  4445 454667899999987544333333 223445555  544544 4443 3 67888887543 333332


Q ss_pred             cccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEe-CCCcEEEEE
Q 009373          329 GAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA-GDGKLSLID  406 (536)
Q Consensus       329 ~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~i~vwd  406 (536)
                      .......+.++++|++..|..+ +..+.|..+|+.....    ..+...........+|+++...|+.+. ..+.|..+|
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~----~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce----EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEe
Confidence            2234568899999877665544 4567899999875321    222222122345677887766555554 467888888


Q ss_pred             CCcc
Q 009373          407 VRKL  410 (536)
Q Consensus       407 ~~~~  410 (536)
                      ..++
T Consensus       236 ~~~g  239 (316)
T 1ijq_A          236 RLTG  239 (316)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            7553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.01  E-value=0.16  Score=46.94  Aligned_cols=179  Identities=10%  Similarity=-0.034  Sum_probs=90.9

Q ss_pred             EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC-ccCEEEEEE-eCCEEEEEec----C-------CeEEEE
Q 009373          212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL-DLTRIYSGSW----D-------MTVRVW  278 (536)
Q Consensus       212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~~l~s~s~----d-------g~i~iw  278 (536)
                      +++.|+  ..+.+||..++.-..            ..+... ...-.+++. ++..++.|+.    +       ..+..|
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~------------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~   72 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC------------ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQF   72 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE------------EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEE
T ss_pred             EEEEcC--CceEEECCCCCeEec------------CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEe
Confidence            344555  578889987754211            111111 111222333 6777777774    1       127788


Q ss_pred             eCCCceEeEeeeccc---cEEEEeecCCEEEEec-C--------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCE
Q 009373          279 DRALLKCLKVLRHSD---WVYGLAPHDTTVASTS-G--------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF  346 (536)
Q Consensus       279 d~~~~~~~~~~~~~~---~v~~~~~~~~~l~~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  346 (536)
                      |..+.+-...-....   .-..+..++.+++.|+ +        ..+.+||+.+++-...-.......-.+++. .++++
T Consensus        73 d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i  151 (315)
T 4asc_A           73 DHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLV  151 (315)
T ss_dssp             ETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEE
T ss_pred             cCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEE
Confidence            988765432211111   1112224666666665 2        459999998875432211111111112222 35667


Q ss_pred             EEEEcC-C-----CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCC-----cEEEEECCc
Q 009373          347 LFTGGE-D-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDG-----KLSLIDVRK  409 (536)
Q Consensus       347 l~tg~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~~~  409 (536)
                      ++.|+. +     ..+.+||+.+..=    ..+..+......-.++.+++..++.|+.++     .+.+||+.+
T Consensus       152 yv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          152 YVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             EEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence            777765 2     3588999876521    222222222222334455667777777654     478888876

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.98  E-value=0.3  Score=47.44  Aligned_cols=147  Identities=9%  Similarity=0.024  Sum_probs=81.5

Q ss_pred             cEEEEEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEEEEeC-CC----cEEEEEcccCcc
Q 009373          160 AVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAGGT-DG----FIHCWRAVEVLP  232 (536)
Q Consensus       160 ~V~~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg~~-dg----~i~vwd~~~~~~  232 (536)
                      ....|+++| ++..|+.+...+.|+.+|++++.......... ..-+++.++++.|+++.. ++    .+...+. .+. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~-  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG-  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc-
Confidence            456889998 45556666555889999998765444333322 334566788886666554 22    2333332 221 


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCCCceEeEeee--ccccEE--EEeecCCEE
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVY--GLAPHDTTV  305 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~v~--~~~~~~~~l  305 (536)
                                ......+.. ......++++   +..+++-..++.|..++..++.......  ......  ++.++++++
T Consensus       216 ----------~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          216 ----------FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             ----------SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             ----------eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence                      110011111 1223455663   3444454567899999998766533332  222333  444888855


Q ss_pred             EEe-c-CCcEEEEeCC
Q 009373          306 AST-S-GSDVYIWDTN  319 (536)
Q Consensus       306 ~~~-~-d~~i~i~d~~  319 (536)
                      +.+ . .+.|..++..
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            444 4 6789988765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.94  E-value=0.25  Score=45.76  Aligned_cols=213  Identities=10%  Similarity=-0.073  Sum_probs=116.0

Q ss_pred             CCcEEEEECCCCc--eeeeeCCC-CceEEEEecC-CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCcc
Q 009373          179 DSIVRMWHLEDGF--SIASSKPL-GCTIRAVAAD-KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG  254 (536)
Q Consensus       179 dg~v~iwd~~~~~--~~~~~~~~-~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~  254 (536)
                      ...|+..+++...  ....+... ....+++.+. +.++++-...+.|..+++.....            ....+.....
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------------~~~~~~~~l~   79 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------------VQNVVVSGLL   79 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------------CCEEEEECCS
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------------eEEEEcCCCC
Confidence            4678888887653  11111111 1122344443 44555555677888888755420            0111111123


Q ss_pred             CEEEEEEe--CCE-EEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec---CCcEEEEeCCCCcEEE
Q 009373          255 PITSLALD--LTR-IYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS---GSDVYIWDTNSGCLLT  325 (536)
Q Consensus       255 ~v~~l~~~--~~~-l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~---d~~i~i~d~~~~~~~~  325 (536)
                      ....++++  ++. +++-...+.|.++++........+. .......++  |.+..++.+.   .+.|..+++..... .
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~  158 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F  158 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E
Confidence            34456663  444 4455567889999987543322222 223345554  5444444433   46788888764332 2


Q ss_pred             EEccccccceEEEEEeCCCCEEEE-EcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEE-eCCCcEE
Q 009373          326 VVNGAHVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSA-AGDGKLS  403 (536)
Q Consensus       326 ~~~~~~~~~i~~l~~~~~~~~l~t-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~i~  403 (536)
                      .+....-...+.++++|++..|.. -+..+.|..+|+.....    ..+  ..+......+++++.+.++.+ ...+.|.
T Consensus       159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~----~~~--~~~~~~~P~glav~~~~lywtd~~~~~V~  232 (318)
T 3sov_A          159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR----QAV--VKGSLPHPFALTLFEDILYWTDWSTHSIL  232 (318)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEE--ECSCCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred             EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce----EEE--ecCCCCCceEEEEeCCEEEEEecCCCeEE
Confidence            222223446789999996665554 45568899999865421    111  122345567888876555544 4567888


Q ss_pred             EEECCcc
Q 009373          404 LIDVRKL  410 (536)
Q Consensus       404 vwd~~~~  410 (536)
                      .+|..++
T Consensus       233 ~~~~~~G  239 (318)
T 3sov_A          233 ACNKYTG  239 (318)
T ss_dssp             EEETTTC
T ss_pred             EEECCCC
Confidence            8888654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.87  E-value=0.6  Score=49.09  Aligned_cols=199  Identities=14%  Similarity=0.013  Sum_probs=110.5

Q ss_pred             CCccCEEEEEEe--CCEEE-EEecCCeEEEEeCCCc----eEeEeee-ccccEEEEe--ecCC-EEEEec-CCcEEEEeC
Q 009373          251 EHEGPITSLALD--LTRIY-SGSWDMTVRVWDRALL----KCLKVLR-HSDWVYGLA--PHDT-TVASTS-GSDVYIWDT  318 (536)
Q Consensus       251 ~h~~~v~~l~~~--~~~l~-s~s~dg~i~iwd~~~~----~~~~~~~-~~~~v~~~~--~~~~-~l~~~~-d~~i~i~d~  318 (536)
                      .....+..++++  .+.|+ +-...+.|+.+++...    .....+. .......|+  +.+. ++++-. .+.|.+.++
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            345567788884  34444 4455678888888653    1222222 222333444  5554 444444 688999998


Q ss_pred             CCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-C-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEE
Q 009373          319 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-D-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV  394 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~  394 (536)
                      ........+ .........|+++|.+.+|+.... + +.|...++....      ........-...+.|++++  ..|+
T Consensus       501 dG~~~~~l~-~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~------~~~lv~~~l~~P~GLavD~~~~~LY  573 (791)
T 3m0c_C          501 KGVKRKTLF-RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLY  573 (791)
T ss_dssp             TSSSEEEEE-ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CCCeEEEEE-eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc------eEEEEeCCCCCceEEEEecCCCeEE
Confidence            765443333 234456889999998665555442 2 678888876542      1122223345778999984  5666


Q ss_pred             EEeC-CCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhH
Q 009373          395 SAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       395 s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      .+.. .+.|...++......          .+...       .+.-..-++++..++ ++++-...+.|...+..+|..+
T Consensus       574 waD~~~~~I~~~d~dG~~~~----------~v~~~-------~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          574 WVDSKLHSISSIDVNGGNRK----------TILED-------EKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             EEETTTTEEEEEETTSCSCE----------EEEEC-------TTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EEeCCCCcEEEEecCCCceE----------EEecC-------CCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence            6654 567888887542110          01000       011112335555555 5556666788888887666544


Q ss_pred             H
Q 009373          473 E  473 (536)
Q Consensus       473 ~  473 (536)
                      .
T Consensus       637 ~  637 (791)
T 3m0c_C          637 N  637 (791)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.84  E-value=0.3  Score=45.30  Aligned_cols=181  Identities=15%  Similarity=0.195  Sum_probs=105.9

Q ss_pred             cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE------eCCE--EEEEe--c--CCeE
Q 009373          208 ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL------DLTR--IYSGS--W--DMTV  275 (536)
Q Consensus       208 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------~~~~--l~s~s--~--dg~i  275 (536)
                      |....++.....+-+.+||+ +++             .+..+..  +.+..+..      .++.  ++.++  .  +++|
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~-------------~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l  101 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGK-------------MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTI  101 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSC-------------EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEE
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCc-------------EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeE
Confidence            34556777777889999999 442             2222322  34555444      2222  33333  3  5789


Q ss_pred             EEEeC--CCceEeEeeec---c-----ccEE--EE--ee-cCC-EEEEec-CCcEEEEeCC-------CCcEEEEEcccc
Q 009373          276 RVWDR--ALLKCLKVLRH---S-----DWVY--GL--AP-HDT-TVASTS-GSDVYIWDTN-------SGCLLTVVNGAH  331 (536)
Q Consensus       276 ~iwd~--~~~~~~~~~~~---~-----~~v~--~~--~~-~~~-~l~~~~-d~~i~i~d~~-------~~~~~~~~~~~~  331 (536)
                      .+|++  .++. +..+..   .     ..++  |+  .+ .+. ++++.. +|.+..|++.       +.+.++++.  .
T Consensus       102 ~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--l  178 (355)
T 3amr_A          102 EIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--M  178 (355)
T ss_dssp             EEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--C
T ss_pred             EEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--C
Confidence            99966  3433 333311   1     2333  33  23 344 344444 7899888882       345677775  4


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec-cCC-CCCeEEEEEc--C---CeEEEEe-CCCcEE
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-IPH-TGPVNSLAFE--F---PWLVSAA-GDGKLS  403 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~h-~~~v~~l~~~--~---~~l~s~s-~dg~i~  403 (536)
                      .+.+..+...+....|+.+-++.-|..|+...... .....+... .++ ...+..|+.-  +   .+|++++ .+++..
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~-~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~  257 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGG-SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA  257 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSC-SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCC-CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence            56788999999999999999986665555432210 111233333 122 2367888873  2   3777777 577999


Q ss_pred             EEECC
Q 009373          404 LIDVR  408 (536)
Q Consensus       404 vwd~~  408 (536)
                      |||..
T Consensus       258 Vydr~  262 (355)
T 3amr_A          258 IYDRQ  262 (355)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99996

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.83  E-value=0.48  Score=52.19  Aligned_cols=142  Identities=14%  Similarity=0.093  Sum_probs=93.6

Q ss_pred             CEEEEEe----------cCCeEEEEeCCCceEe--EeeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEcccc
Q 009373          264 TRIYSGS----------WDMTVRVWDRALLKCL--KVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH  331 (536)
Q Consensus       264 ~~l~s~s----------~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~  331 (536)
                      .+++.|+          ..|.|.+|++..++..  ......+.|++++.-+.+|+++-+.+|++|++...+.+. ....+
T Consensus       845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~-~~~~~  923 (1158)
T 3ei3_A          845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR-TECNH  923 (1158)
T ss_dssp             CEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEETTEEEEEEECTTSCEE-EEEEE
T ss_pred             EEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCCceEE-EEeec
Confidence            6787776          3478999998644433  233377899999955557777778999999998766444 21112


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE-cCCeEEEEeCCCcEEEEECCc
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~vwd~~~  409 (536)
                      -..|..+.....++++++|..-..|.++..+...  ..+..+. -..+...++++.+ +.+.++.+..+|.|.+.....
T Consensus       924 ~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~--~~L~~~a-~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          924 YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPME--GNFEEIA-RDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             CCCSCEEEEEEETTEEEEEESSBCEEEEEEETTT--TEEEEEE-ECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred             cccEEEEEEeccCCEEEEEEhhheEEEEEEEcCC--CeEEEEE-eecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence            2223333333457899999888888887665431  1111221 1234556788877 567889999999999988764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.83  E-value=0.38  Score=46.20  Aligned_cols=196  Identities=11%  Similarity=0.088  Sum_probs=110.6

Q ss_pred             eCccccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCc----eeeeeCC--CCceEEEEec-CCCEEEEEeCCCcEEEEE
Q 009373          155 YGHTEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGF----SIASSKP--LGCTIRAVAA-DKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~----~~~~~~~--~~~~v~~~~~-~~~~l~sg~~dg~i~vwd  226 (536)
                      ......+..++|++.+. ++++-...+.|+.+++....    .......  ....-+++.+ .+++.++-...+.|.+.+
T Consensus       108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~  187 (400)
T 3p5b_L          108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  187 (400)
T ss_dssp             ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence            34456788999998655 44555567889999987521    2222221  2223345555 455555556678888888


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEec--CCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--  299 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~--dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--  299 (536)
                      +....             ....+.........|+++  ++.|+....  .+.|...++........+. .-.....++  
T Consensus       188 ~~g~~-------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd  254 (400)
T 3p5b_L          188 TKGVK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD  254 (400)
T ss_dssp             TTTCS-------------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred             CCCCc-------------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEE
Confidence            75432             111222233456788885  355655542  3678888876443322222 223455555  


Q ss_pred             ecCCEEEEec--CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          300 PHDTTVASTS--GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       300 ~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +.+..|+.+.  .+.|..+|+........... +......++++. .+.++++-...+.|..+|..++
T Consensus       255 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          255 LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            5555555544  57899999875433322221 123445677774 3456666677788988886666

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.035  Score=51.59  Aligned_cols=244  Identities=10%  Similarity=0.014  Sum_probs=120.2

Q ss_pred             CEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEE--ecCCeEEEEeCCCceEeEe
Q 009373          211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSG--SWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       211 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~  288 (536)
                      ..+++++.||.|.-.|..+|+.. +..... ...+..........      .++.++.+  +.||.|..+|..+|.....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~-W~~~~~-~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~   82 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHII-WSIEPE-NFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLP   82 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEE-EEECGG-GSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEE-EEecCC-ccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence            46778888888888887776421 111110 00011111111110      12234333  6899999999998866655


Q ss_pred             eec-----cccEEEEe----e-------cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccc------eEEEEEe----
Q 009373          289 LRH-----SDWVYGLA----P-------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN------TKSLARS----  341 (536)
Q Consensus       289 ~~~-----~~~v~~~~----~-------~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~------i~~l~~~----  341 (536)
                      +..     ..++.. .    .       .+..+++++ ++.+...|+++|+.+..+..+....      ..|....    
T Consensus        83 ~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~  161 (339)
T 2be1_A           83 LSIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKL  161 (339)
T ss_dssp             EEHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-----------------
T ss_pred             eccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccc
Confidence            542     122221 1    1       445566666 8999999999999999986432211      0111110    


Q ss_pred             -CCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC--eE---EEEEcCCeEEEEeCCCcEEEEECCcccccC-
Q 009373          342 -HTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP--VN---SLAFEFPWLVSAAGDGKLSLIDVRKLLRSG-  414 (536)
Q Consensus       342 -~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~--v~---~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~-  414 (536)
                       ..+..++.|..+..+.+.+ +++. .-. ........+...  +.   .+.-+ ..++.++.||.|.-+|..++...+ 
T Consensus       162 d~~~~~v~ig~~~y~v~~~~-~sG~-~W~-~~~s~~~~~~~~~~~~~~~~~s~D-g~~~~~~~dg~v~A~d~~~G~~~W~  237 (339)
T 2be1_A          162 QECENMIVIGKTIFELGIHS-YDGA-SYN-VTYSTWQQNVLDVPLALQNTFSKD-GMCIAPFRDKSLLASDLDFRIARWV  237 (339)
T ss_dssp             ---CCEEEEEEEEEECEECC-TTSC-CCC-CEEEEEECCTTTHHHHTTCSSCSS-SCCEEEETTTEEEEECSTTCCEEEE
T ss_pred             ccCCCeEEEecceEEEEEEC-CCCC-eEE-EecccccccccccccccccccccC-CcEEEECCCCEEEEEECCCCcEEEE
Confidence             1235677777766666655 3331 000 001111111000  00   00001 233567889999999988877766 


Q ss_pred             CCCCCCceeeEEeeCCCeeeecc-ccccEEEEEe----------cCCEEEEecCCCeEEEEeCCchhhH
Q 009373          415 RPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVDI----------GADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~----------~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      .......+.......     .+. ....+.--.|          ++..++--..||.++-+.......+
T Consensus       238 ~~~l~sPv~~~~dv~-----~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~yp~~  301 (339)
T 2be1_A          238 SPTFPGIIVGLFDVF-----NDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQNFPSL  301 (339)
T ss_dssp             CCCCSSCEEEEEEEE-----EETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTTCHHH
T ss_pred             eecCCCCeEEEEEEE-----EecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCCCcee
Confidence            443333332222111     010 0111211112          2334454677999999998765444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.80  E-value=0.17  Score=53.18  Aligned_cols=186  Identities=11%  Similarity=0.097  Sum_probs=97.5

Q ss_pred             eCCEEEEEec-C----CeEEEEeCCCc-eEeEe-eeccccEEEEeecCCEEEEec-C-----CcEEEEeCCCCcE--EEE
Q 009373          262 DLTRIYSGSW-D----MTVRVWDRALL-KCLKV-LRHSDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGCL--LTV  326 (536)
Q Consensus       262 ~~~~l~s~s~-d----g~i~iwd~~~~-~~~~~-~~~~~~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~--~~~  326 (536)
                      |+++|+.+.. +    .+|+++|+.++ +.+.. +.....-...+++++.|+... +     ..|.++++.++..  ...
T Consensus       185 DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv  264 (751)
T 2xe4_A          185 EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCL  264 (751)
T ss_dssp             TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEE
T ss_pred             CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEE
Confidence            3455554332 2    35999999988 63221 111111123458887776655 4     2588889887642  223


Q ss_pred             EccccccceEEEEEeCCCCEEEEEcC---CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEc-CCeEEEEe-CC--
Q 009373          327 VNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE-FPWLVSAA-GD--  399 (536)
Q Consensus       327 ~~~~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s-~d--  399 (536)
                      +..........+.|+|||++|+..+.   ...|.++|+.++..  ................++.|+ ++.|+..+ .+  
T Consensus       265 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a  342 (751)
T 2xe4_A          265 YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGA  342 (751)
T ss_dssp             EECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTC
T ss_pred             EecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCC
Confidence            32223344567899999998876553   34578888876521  010011122345566777753 45554443 33  


Q ss_pred             --CcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEe
Q 009373          400 --GKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWN  465 (536)
Q Consensus       400 --g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~  465 (536)
                        ..|..+|+.+... +.        .       ....+.....+..+.+.++ .+++...||..++|-
T Consensus       343 ~~~~L~~~d~~~~~~-~~--------~-------~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          343 VNHKLLIAPRGQPSD-WS--------H-------VLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TTCEEEEEETTSTTC-CC--------C-------EEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEEcCCCccc-ce--------e-------eEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEE
Confidence              2566666653200 00        0       0001112224455666666 566777788655543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.76  E-value=0.16  Score=47.96  Aligned_cols=226  Identities=12%  Similarity=0.010  Sum_probs=110.8

Q ss_pred             CCCEEEEEeCC-CcEEEEECCC--C--ceeeeeC-CCCceEEEEecCCCEEEEEeC-C---------CcEEEEEcccCcc
Q 009373          169 SAKLLFTSGYD-SIVRMWHLED--G--FSIASSK-PLGCTIRAVAADKKLLVAGGT-D---------GFIHCWRAVEVLP  232 (536)
Q Consensus       169 ~~~~l~sgs~d-g~v~iwd~~~--~--~~~~~~~-~~~~~v~~~~~~~~~l~sg~~-d---------g~i~vwd~~~~~~  232 (536)
                      ++.+++.|+.+ ..+.+||+.+  .  ..+..+. .......+...++.+++.|+. +         ..+.+||+.+..-
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W   98 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW   98 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence            56666776643 5688899864  2  1222222 112222233356777777776 2         4688888876532


Q ss_pred             ceecccCcccccceEEee-CCccCEEEEEEeCCEEEEEecC---------------------------------------
Q 009373          233 HLFDISGSEKQNTQFRLW-EHEGPITSLALDLTRIYSGSWD---------------------------------------  272 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~d---------------------------------------  272 (536)
                      ..           ..... .....-.++..++..++.|+.+                                       
T Consensus        99 ~~-----------~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (357)
T 2uvk_A           99 VK-----------LMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFN  167 (357)
T ss_dssp             EE-----------CSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCC
T ss_pred             EE-----------CCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCc
Confidence            11           11111 1112222334577777777754                                       


Q ss_pred             CeEEEEeCCCceEeEeee--cccc--EEEEeecCCEEEEec-C------CcEEEEeC--CCCcEEEEEccccc-cceEEE
Q 009373          273 MTVRVWDRALLKCLKVLR--HSDW--VYGLAPHDTTVASTS-G------SDVYIWDT--NSGCLLTVVNGAHV-GNTKSL  338 (536)
Q Consensus       273 g~i~iwd~~~~~~~~~~~--~~~~--v~~~~~~~~~l~~~~-d------~~i~i~d~--~~~~~~~~~~~~~~-~~i~~l  338 (536)
                      ..+.+||..+.+-...-.  ....  ...+..++++++.|+ +      ..+.+||+  .+.+-...-..... ......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~  247 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF  247 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence            578999988765433322  1111  222335666666655 2      35778887  44432221110011 111111


Q ss_pred             EEeCCCCEEEEEcCC----------------------CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEE
Q 009373          339 ARSHTGDFLFTGGED----------------------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSA  396 (536)
Q Consensus       339 ~~~~~~~~l~tg~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~  396 (536)
                      +...++.+++.|+.+                      ..+.+||+.+..    ...+..+......-.++.+.+..++.|
T Consensus       248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~~~~~~~~~~i~v~G  323 (357)
T 2uvk_A          248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK----WDKSGELSQGRAYGVSLPWNNSLLIIG  323 (357)
T ss_dssp             EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-------CEEEEECSSCCBSSEEEEETTEEEEEE
T ss_pred             EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc----eeeCCCCCCCcccceeEEeCCEEEEEe
Confidence            222356777777632                      247789987652    223333332223334455667778888


Q ss_pred             eCCC------cEEEEECCc
Q 009373          397 AGDG------KLSLIDVRK  409 (536)
Q Consensus       397 s~dg------~i~vwd~~~  409 (536)
                      +.++      .|.++++++
T Consensus       324 G~~~~~~~~~~v~~l~~~~  342 (357)
T 2uvk_A          324 GETAGGKAVTDSVLITVKD  342 (357)
T ss_dssp             EECGGGCEEEEEEEEEC-C
T ss_pred             eeCCCCCEeeeEEEEEEcC
Confidence            8653      344556665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.71  E-value=0.78  Score=48.29  Aligned_cols=226  Identities=12%  Similarity=0.096  Sum_probs=130.0

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee-CCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcccee
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS-KPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLF  235 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~-~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~  235 (536)
                      ...|.+|.-..+|. |..|..+| +..||-..-+..... ......|.++. .....|..|+.+| +..||..+...   
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f---   94 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRY---   94 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEE---
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE---
Confidence            56799998877665 55667777 445663221111110 11234577765 3445778887765 77888765421   


Q ss_pred             cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-----ccccEEEEe--ecCCEEEEe
Q 009373          236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-----HSDWVYGLA--PHDTTVAST  308 (536)
Q Consensus       236 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~--~~~~~l~~~  308 (536)
                      ..          ........|.++..+.+.|..++.+ .+..+|..+++......     ....|.++.  .++.+.++ 
T Consensus        95 ~~----------~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-  162 (758)
T 3ott_A           95 EQ----------PETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-  162 (758)
T ss_dssp             CC----------CSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEE-
T ss_pred             EC----------cccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEE-
Confidence            00          0001123577766666677777766 68889987765433211     234577776  35555554 


Q ss_pred             cCCcEEEEeCCCCcEEEEEccc----cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          309 SGSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       309 ~d~~i~i~d~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      +.+.+..||..+++........    ....|.++...+++..|..|+. +-+..+|..+...    .....+  ....|.
T Consensus       163 t~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~----~~~~~l--~~~~i~  235 (758)
T 3ott_A          163 TYNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI----KQTEAF--HNNSIK  235 (758)
T ss_dssp             ETTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE----EEEEEE--EEEEEE
T ss_pred             eCCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE----EeccCC--CCCeEE
Confidence            4456888998776543221111    1224888888877776666664 4588888766521    111111  234578


Q ss_pred             EEEEcC-CeEEEEeCCCcEEEEECCc
Q 009373          385 SLAFEF-PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       385 ~l~~~~-~~l~s~s~dg~i~vwd~~~  409 (536)
                      ++..+. ..|..|+.+ -+.+++..+
T Consensus       236 ~i~~d~~g~lWigT~~-Gl~~~~~~~  260 (758)
T 3ott_A          236 SLALDGNGDLLAGTDN-GLYVYHNDT  260 (758)
T ss_dssp             EEEECTTCCEEEEETT-EEEEECCTT
T ss_pred             EEEEcCCCCEEEEeCC-ceeEEecCC
Confidence            888764 567777754 578888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.66  E-value=0.00082  Score=69.01  Aligned_cols=37  Identities=14%  Similarity=0.277  Sum_probs=29.6

Q ss_pred             cccccCCcHHHHHHHhcCCC-hhhHHHHhhhhHHHHHH
Q 009373           61 RSTITDLPPALISEILNCLD-PKELGIVSCVSPILHRL   97 (536)
Q Consensus        61 ~~~l~~Lp~ei~~~I~~~L~-~~~l~~~~~v~~~~~~l   97 (536)
                      .|.+..||+|++.+||+||+ .+++.++++|||+|+.+
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            46788999999999999999 99999999999999998

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.64  E-value=0.86  Score=47.87  Aligned_cols=195  Identities=11%  Similarity=0.080  Sum_probs=109.5

Q ss_pred             CccccEEEEEEecCC-CEEEEEeCCCcEEEEECCCC----ceeeeeC--CCCceEEEEecCC-CEEEEEeCCCcEEEEEc
Q 009373          156 GHTEAVLTVFVLASA-KLLFTSGYDSIVRMWHLEDG----FSIASSK--PLGCTIRAVAADK-KLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~-~~l~sgs~dg~v~iwd~~~~----~~~~~~~--~~~~~v~~~~~~~-~~l~sg~~dg~i~vwd~  227 (536)
                      .....+..|+|++.. .++++-...+.|+.+++...    .....+.  .....-+++.+.+ +++++-...+.|.+.++
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeC
Confidence            344567789999854 45555566788999998753    1122222  1223345666555 45555556788888887


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEec-C-CeEEEEeCCCceEeEeee-ccccEEEEe--e
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW-D-MTVRVWDRALLKCLKVLR-HSDWVYGLA--P  300 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~-d-g~i~iwd~~~~~~~~~~~-~~~~v~~~~--~  300 (536)
                      ....             ....+.........|++++  +.|+.+.. . +.|...++........+. .-.....|+  +
T Consensus       501 dG~~-------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~  567 (791)
T 3m0c_C          501 KGVK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL  567 (791)
T ss_dssp             TSSS-------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEET
T ss_pred             CCCe-------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEec
Confidence            5432             1111223344578888853  56665543 2 678888886544433333 224556665  4


Q ss_pred             cCCEEEEec--CCcEEEEeCCCCcEEEEEcc-ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          301 HDTTVASTS--GSDVYIWDTNSGCLLTVVNG-AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       301 ~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .+..|+.+.  .+.|..+|+........+.. +......+|++.. +.++++-...+.|...|..++
T Consensus       568 ~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          568 LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence            455554444  57899999865544333321 1223455666643 345555566677888886665

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.59  E-value=0.45  Score=43.92  Aligned_cols=143  Identities=10%  Similarity=0.015  Sum_probs=73.1

Q ss_pred             eCCEEEEEec----CC-------eEEEEeCCCceEeEeee--cc-ccEEEEeecCCEEEEec-C-------CcEEEEeCC
Q 009373          262 DLTRIYSGSW----DM-------TVRVWDRALLKCLKVLR--HS-DWVYGLAPHDTTVASTS-G-------SDVYIWDTN  319 (536)
Q Consensus       262 ~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~l~~~~-d-------~~i~i~d~~  319 (536)
                      ++..++.|+.    ++       .+..||..+.+-...-.  .. ........++.+++.|+ +       ..+.+||+.
T Consensus        56 ~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~  135 (318)
T 2woz_A           56 QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV  135 (318)
T ss_dssp             SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETT
T ss_pred             CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCC
Confidence            6677777773    12       27788887765433211  11 11122235666666665 3       248899998


Q ss_pred             CCcEEEEEccccccceEEEEEeCCCCEEEEEcC------CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeE
Q 009373          320 SGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE------DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWL  393 (536)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l  393 (536)
                      +.+-...-.......-.+++. .++.+++.|+.      -..+.+||+.+..    ...+..+......-.++.++...+
T Consensus       136 ~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~----W~~~~~~p~~r~~~~~~~~~~~iy  210 (318)
T 2woz_A          136 AAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD----WKDLAPMKTPRSMFGVAIHKGKIV  210 (318)
T ss_dssp             TTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE----EEEECCCSSCCBSCEEEEETTEEE
T ss_pred             CCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE----EEECCCCCCCcccceEEEECCEEE
Confidence            876443211111111112222 35677777764      2358899987762    122222222222223444566667


Q ss_pred             EEEeCC-----CcEEEEECCc
Q 009373          394 VSAAGD-----GKLSLIDVRK  409 (536)
Q Consensus       394 ~s~s~d-----g~i~vwd~~~  409 (536)
                      +.|+.+     ..+.+||+.+
T Consensus       211 v~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          211 IAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEEEEETTEEEEEEEEEETTT
T ss_pred             EEcCcCCCCccceEEEEECCC
Confidence            777654     3467888775

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.58  E-value=0.6  Score=45.32  Aligned_cols=144  Identities=11%  Similarity=-0.003  Sum_probs=79.1

Q ss_pred             EEEecC--CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC-----e
Q 009373          204 RAVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-----T  274 (536)
Q Consensus       204 ~~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-----~  274 (536)
                      +++.++  +..|+.+...+.|+.++..++.              +..+.........+++  +++ |+.+...+     .
T Consensus       144 vavd~~s~~g~Lyv~D~~~~I~~id~~~g~--------------v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~g  208 (433)
T 4hw6_A          144 MMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--------------VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTG  208 (433)
T ss_dssp             EEECTTTTTCEEEEECBTSCEEEEETTTTE--------------EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEE
T ss_pred             EEEccccCCCEEEEEeCCCCEEEEECCCCE--------------EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccce
Confidence            445553  4455555555788888875542              2233334456788888  556 54444321     2


Q ss_pred             EEEEeCCCceE-eEeeeccccE--EEEee-cCCEEEEec-CCcEEEEeCCCCcEEEEE-ccccccceEEEEEeCCCCE-E
Q 009373          275 VRVWDRALLKC-LKVLRHSDWV--YGLAP-HDTTVASTS-GSDVYIWDTNSGCLLTVV-NGAHVGNTKSLARSHTGDF-L  347 (536)
Q Consensus       275 i~iwd~~~~~~-~~~~~~~~~v--~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~-l  347 (536)
                      +...+...+.. ...+......  .++.+ ++.++++.. ++.|+.+|..++.....+ ..+.......++++|+++. .
T Consensus       209 v~~~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LY  288 (433)
T 4hw6_A          209 IYLFTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAY  288 (433)
T ss_dssp             EEEECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred             EEEEECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEE
Confidence            33333221111 0111111111  23446 666666655 688999999877663322 2222233457999999984 4


Q ss_pred             EEEcCCCcEEEEEcc
Q 009373          348 FTGGEDGAIHMYEII  362 (536)
Q Consensus       348 ~tg~~dg~i~iwd~~  362 (536)
                      ++-...+.|+.+++.
T Consensus       289 vad~~~~~I~~~~~d  303 (433)
T 4hw6_A          289 IIYNGKHCIYRVDYN  303 (433)
T ss_dssp             EEETTTTEEEEEEBC
T ss_pred             EEeCCCCEEEEEeCC
Confidence            555567889998875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.53  E-value=1  Score=47.38  Aligned_cols=227  Identities=14%  Similarity=0.131  Sum_probs=128.5

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecc
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  237 (536)
                      ...|.++....++ .|..|+.+| +..||..+.+...........|.++..+...|..|+.+ -+..++..++....+..
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~  138 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDT  138 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECH
T ss_pred             CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEecc
Confidence            3568888777655 566667665 78899877643321111223455555445567777766 57788876543211100


Q ss_pred             cCcccccceEEeeCCccCEEEEEEe-CCEEEEEecCCeEEEEeCCCceEeEee-e-----ccccEEEEeec--CCEEEEe
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLALD-LTRIYSGSWDMTVRVWDRALLKCLKVL-R-----HSDWVYGLAPH--DTTVAST  308 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-----~~~~v~~~~~~--~~~l~~~  308 (536)
                      .         ...-....|.++..+ .+.|..|+.+ -+..+|..+++..... .     ....|.++..+  +..|..+
T Consensus       139 ~---------~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWig  208 (758)
T 3ott_A          139 R---------RNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIG  208 (758)
T ss_dssp             H---------HHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEE
T ss_pred             C---------CCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEE
Confidence            0         000123468888774 4566666654 5778888776543211 1     12247777643  5555555


Q ss_pred             cCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec-----cCCCCCe
Q 009373          309 SGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW-----IPHTGPV  383 (536)
Q Consensus       309 ~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~h~~~v  383 (536)
                      +++.+..+|..+++.... .......|.++...++|.+. .|+.+ -+.+++..+...    ......     .-....|
T Consensus       209 t~~Gl~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~----~~~~~~~~~~~~l~~~~i  281 (758)
T 3ott_A          209 TEGYLFQYFPSTGQIKQT-EAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPL----QHIIHDSRNIQSLTNNII  281 (758)
T ss_dssp             EEEEEEEEETTTTEEEEE-EEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCC----EEECCCTTCTTSCSCSCE
T ss_pred             ECCCCeEEcCCCCeEEec-cCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcE----EEEEcCCCCcCcCCcCeE
Confidence            556788999887654322 11134468888888777754 44544 477888765421    111100     1123468


Q ss_pred             EEEEEcC-CeEEEEeCCCcEEEE
Q 009373          384 NSLAFEF-PWLVSAAGDGKLSLI  405 (536)
Q Consensus       384 ~~l~~~~-~~l~s~s~dg~i~vw  405 (536)
                      .++..+. ..|..|+..| +.++
T Consensus       282 ~~i~~D~~g~lWiGT~~G-l~~~  303 (758)
T 3ott_A          282 WNIFADQEHNIWLGTDYG-ISLS  303 (758)
T ss_dssp             EEEEECTTCCEEEEESSS-EEEE
T ss_pred             EEEEEcCCCCEEEEeCCc-cccc
Confidence            8988875 5677777766 5544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.45  E-value=0.21  Score=47.05  Aligned_cols=144  Identities=9%  Similarity=0.044  Sum_probs=72.6

Q ss_pred             cCCCEEEEEeCC-CcEEEEEcccCccceecccCcccccceEEee-CCccCEEEEEEeCCEEEEEec-C---------CeE
Q 009373          208 ADKKLLVAGGTD-GFIHCWRAVEVLPHLFDISGSEKQNTQFRLW-EHEGPITSLALDLTRIYSGSW-D---------MTV  275 (536)
Q Consensus       208 ~~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~s~-d---------g~i  275 (536)
                      .++.+++.|+.+ ..+.++|+.+....         ......+. .....-....+++..++.|+. +         ..+
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~---------W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v   88 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKK---------WTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDV   88 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCC---------EEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCE
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCC---------eeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccE
Confidence            366666777654 46778887531111         11111111 011112233346666777765 2         468


Q ss_pred             EEEeCCCceEeEeeecc----ccEEEEeecCCEEEEec-C---------------------------------------C
Q 009373          276 RVWDRALLKCLKVLRHS----DWVYGLAPHDTTVASTS-G---------------------------------------S  311 (536)
Q Consensus       276 ~iwd~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~-d---------------------------------------~  311 (536)
                      .+||..+.+-...-...    ....++..++++++.|+ +                                       .
T Consensus        89 ~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (357)
T 2uvk_A           89 HKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNK  168 (357)
T ss_dssp             EEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCC
T ss_pred             EEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcc
Confidence            88998876533322111    11223336777777766 3                                       4


Q ss_pred             cEEEEeCCCCcEEEEEccccccce-EEEEEeCCCCEEEEEcC------CCcEEEEEc
Q 009373          312 DVYIWDTNSGCLLTVVNGAHVGNT-KSLARSHTGDFLFTGGE------DGAIHMYEI  361 (536)
Q Consensus       312 ~i~i~d~~~~~~~~~~~~~~~~~i-~~l~~~~~~~~l~tg~~------dg~i~iwd~  361 (536)
                      .+.+||+.+.+-...-........ .+++.. ++.+++.|+.      ...+.+||+
T Consensus       169 ~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             EEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             cEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            699999988764433211111111 223322 5666677664      235777876

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.36  E-value=0.61  Score=42.84  Aligned_cols=200  Identities=9%  Similarity=0.038  Sum_probs=105.5

Q ss_pred             EEEEEEecCCCEEEEEe-CCCcEEEEECCCCceeee-eCCC----C--ceEE--EE---ecCCCEEEEEe----------
Q 009373          161 VLTVFVLASAKLLFTSG-YDSIVRMWHLEDGFSIAS-SKPL----G--CTIR--AV---AADKKLLVAGG----------  217 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs-~dg~v~iwd~~~~~~~~~-~~~~----~--~~v~--~~---~~~~~~l~sg~----------  217 (536)
                      --+++|++....|+.++ ..++|..|+...+..... +..-    .  ....  .+   .+++.++++..          
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            34678988666666666 799999999986643333 2221    1  1223  33   35555666543          


Q ss_pred             ---CCCcEEEEEcc---cCccce-ecccCcccccceEEeeC-CccCEEEEEE--eCCEEEEEecC-CeEEEEeCCCceEe
Q 009373          218 ---TDGFIHCWRAV---EVLPHL-FDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWD-MTVRVWDRALLKCL  286 (536)
Q Consensus       218 ---~dg~i~vwd~~---~~~~~~-~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~d-g~i~iwd~~~~~~~  286 (536)
                         .+..|..+|+.   +++... .++.....  ......+ -......++.  +|+..++++.- +.|...+.......
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~--~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQD--EFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS  172 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHH--HHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccc--cccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence               26779999987   553211 11100000  0000001 1124677888  67888888888 88877776543222


Q ss_pred             Eeeecc------ccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcE--EEEEcccc---ccceEEE-EEeCCCCE-EEEE
Q 009373          287 KVLRHS------DWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCL--LTVVNGAH---VGNTKSL-ARSHTGDF-LFTG  350 (536)
Q Consensus       287 ~~~~~~------~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~--~~~~~~~~---~~~i~~l-~~~~~~~~-l~tg  350 (536)
                      ......      ...+.+.  |++..|++.. ++.+..+|+.+...  +..-..+.   ......+ ..-.+|+. +++.
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~  252 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA  252 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred             eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEc
Confidence            111111      1133444  7898888776 79999999885432  21110011   1122332 33346776 5555


Q ss_pred             cCCCcEEEEEcc
Q 009373          351 GEDGAIHMYEII  362 (536)
Q Consensus       351 ~~dg~i~iwd~~  362 (536)
                      ...+.+.+.+..
T Consensus       253 ~~~~~~~l~S~D  264 (334)
T 2p9w_A          253 RAPYAISFRSWD  264 (334)
T ss_dssp             ETTEEEEEECSS
T ss_pred             CCCCEEEEECCC
Confidence            556655555543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.33  E-value=0.017  Score=60.16  Aligned_cols=197  Identities=14%  Similarity=0.011  Sum_probs=104.6

Q ss_pred             CEEEEEEe--CCEEEEE-ecCCeEEEEeCCC----ceEeEeee-ccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCc
Q 009373          255 PITSLALD--LTRIYSG-SWDMTVRVWDRAL----LKCLKVLR-HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGC  322 (536)
Q Consensus       255 ~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~----~~~~~~~~-~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~  322 (536)
                      .+..++|+  .+.|+.+ ...+.|..+++..    ......+. .......++  +. ++++++-. .+.|.++++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            45567774  4555554 4557888888875    22222221 111223344  33 44444444 6889999987654


Q ss_pred             EEEEEccccccceEEEEEeCCCCEEEEEcC-C-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEE-e
Q 009373          323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGE-D-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-A  397 (536)
Q Consensus       323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-s  397 (536)
                      ....+. ........++++|.+.+|+.+.. . +.|.++++.....    ..+  ....-...+.|++++  ..|+.+ +
T Consensus       487 ~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~----~~l--~~~~l~~PnGlavd~~~~~LY~aD~  559 (699)
T 1n7d_A          487 RKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI----YSL--VTENIQWPNGITLDLLSGRLYWVDS  559 (699)
T ss_dssp             EEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC----CEE--SCSSCSSCCCEEECTTTCCEEEEET
T ss_pred             eEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe----eEE--EeCCCCCccEEEEeccCCEEEEEec
Confidence            433332 23345678899997655554432 2 6788777654311    111  112234567899975  445444 4


Q ss_pred             CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHH
Q 009373          398 GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       398 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~  475 (536)
                      ..+.|.++|+......          .+....  .  ..++.   ..++++++ ++++....+.|..++..++..+..+
T Consensus       560 ~~~~I~~~d~dG~~~~----------~~~~~~--~--~~~~P---~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          560 KLHSISSIDVNGGNRK----------TILEDE--K--RLAHP---FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             TTTEEEEECSSSSCCE----------EECCCS--S--SCSSC---CCCEEETTEEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             CCCeEEEEccCCCceE----------EEEecC--C--cCCCc---eEeEEECCEEEEEeCCCCeEEEEEccCCCceEEe
Confidence            5678999988642110          000000  0  00111   12333444 5666677789999998877655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.32  E-value=0.15  Score=55.93  Aligned_cols=191  Identities=16%  Similarity=0.207  Sum_probs=118.9

Q ss_pred             cCCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEecCCcEEEEeCCCC-cEEEEEcccc----ccceEEEEEeCCC
Q 009373          271 WDMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAH----VGNTKSLARSHTG  344 (536)
Q Consensus       271 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~-~~~~~~~~~~----~~~i~~l~~~~~~  344 (536)
                      ...++.|+|+++...++.+.....|.-.. -+.+.++..++..|..|++... .+...+. -|    ...|..-..+++.
T Consensus        84 ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~  162 (1630)
T 1xi4_A           84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQ  162 (1630)
T ss_pred             cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCC
Confidence            36899999999998888888777777777 6788889999999999999753 3333332 23    4567777888888


Q ss_pred             CEEEEEc-------CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC----C-eEEEEeC---CCcEEEEECCc
Q 009373          345 DFLFTGG-------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF----P-WLVSAAG---DGKLSLIDVRK  409 (536)
Q Consensus       345 ~~l~tg~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~-~l~s~s~---dg~i~vwd~~~  409 (536)
                      ++++..|       -.|.+.+|.....       ..+.+.||.+.-..+...+    . .++.+..   .++++|-++..
T Consensus       163 kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~  235 (1630)
T 1xi4_A          163 KWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT  235 (1630)
T ss_pred             CeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence            8877543       3578999988765       3455667776665555532    2 3332222   37899999865


Q ss_pred             ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHH
Q 009373          410 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRA  476 (536)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~  476 (536)
                      ..... +...+....+.  .++.   ..... -.++..++.  .+..-..-|.|.++|+.+|..+..-.
T Consensus       236 ~~~~~-~~f~kk~~~~~--~~~~---~~~Df-pv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          236 PPTGN-QPFPKKAVDVF--FPPE---AQNDF-PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             CccCC-CCCcccccccc--CCcc---cccCc-ceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence            31111 11111111110  0100   01111 123444443  56666778999999999998886543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.039  Score=51.27  Aligned_cols=103  Identities=11%  Similarity=0.128  Sum_probs=69.1

Q ss_pred             CCEEEEEecCCeEEEEeCCCceEeEeeecc--ccEEEEe-e----cCCEEEEe--cCCcEEEEeCCCCcEEEEEcccccc
Q 009373          263 LTRIYSGSWDMTVRVWDRALLKCLKVLRHS--DWVYGLA-P----HDTTVAST--SGSDVYIWDTNSGCLLTVVNGAHVG  333 (536)
Q Consensus       263 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~-~----~~~~l~~~--~d~~i~i~d~~~~~~~~~~~~~~~~  333 (536)
                      ++.++.++.||.|.-.|..+|+....+...  .++.... +    ++..++..  .||.+..+|..+|.....+......
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            357899999999999999999999998844  3333332 1    23444443  4999999999998665544311111


Q ss_pred             ceEEEEEe-----------CCCCEEEEEcCCCcEEEEEcccCc
Q 009373          334 NTKSLARS-----------HTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       334 ~i~~l~~~-----------~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      ...-+...           ..+..+++|+.+|.+.-.|+.+++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~  132 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE  132 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence            11001111           145678899999999999999993

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.25  E-value=0.044  Score=57.02  Aligned_cols=219  Identities=10%  Similarity=-0.075  Sum_probs=113.4

Q ss_pred             CCcEEEEECCCCceeeeeCCC-CceEEEEecCCCEEEEE-eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCE
Q 009373          179 DSIVRMWHLEDGFSIASSKPL-GCTIRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI  256 (536)
Q Consensus       179 dg~v~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  256 (536)
                      .+.|+..++.+......+... ...-+++.+.+..|+.+ ...+.|+.+++.+...      +   ......+.......
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~------~---~~~~~~i~~~~~~P  455 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------V---SSYDTVISRDIQAP  455 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC----------CCCCCBCCSCC--C
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCC------C---cceEEEEeCCCCCc
Confidence            457888888776554433322 22234556655555554 4457888888754100      0   00000111111123


Q ss_pred             EEEEE--eC-CEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec--C-CcEEEEeCCCCcEEEEE
Q 009373          257 TSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS--G-SDVYIWDTNSGCLLTVV  327 (536)
Q Consensus       257 ~~l~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~--d-~~i~i~d~~~~~~~~~~  327 (536)
                      ..|++  .+ +.+++-...+.|.++++........+. .......++  |.+..|+.+.  . +.|..+++..... ..+
T Consensus       456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l  534 (699)
T 1n7d_A          456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSL  534 (699)
T ss_dssp             CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEE
T ss_pred             ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEE
Confidence            34555  23 444554567889999987654433333 112233344  5444444433  2 6788877754322 222


Q ss_pred             ccccccceEEEEEeCCCC-EEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEE-eCCCcEEEE
Q 009373          328 NGAHVGNTKSLARSHTGD-FLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSA-AGDGKLSLI  405 (536)
Q Consensus       328 ~~~~~~~i~~l~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-s~dg~i~vw  405 (536)
                      ........+.|+++|++. ++++-+..+.|.++++.....    ..+...........+|+++++.|+.+ ...+.|..+
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~----~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA  610 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC----EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEE
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce----EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEE
Confidence            212234567899998755 445555677899999865321    12221112223445667766555544 456789999


Q ss_pred             ECCccc
Q 009373          406 DVRKLL  411 (536)
Q Consensus       406 d~~~~~  411 (536)
                      |..++.
T Consensus       611 d~~~G~  616 (699)
T 1n7d_A          611 NRLTGS  616 (699)
T ss_dssp             ETTTEE
T ss_pred             EccCCC
Confidence            976543

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=96.17  E-value=0.95  Score=43.18  Aligned_cols=262  Identities=14%  Similarity=0.076  Sum_probs=138.6

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC-CccCEEEEEE--eCCEEEEEecCCeEEEE
Q 009373          202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLAL--DLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~s~s~dg~i~iw  278 (536)
                      .+..++......+.-..||.|+.|-.......-.  ...........+.. ....+..+++  .....+....||.|..|
T Consensus        54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~--g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w  131 (389)
T 3kci_A           54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGI--GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW  131 (389)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSS--SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred             ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCC--CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence            4556666666777778899999996533211000  00000000111111 1123333444  55667777889999999


Q ss_pred             eCCCc-----------eEeEeee--ccccEEEEeecCC-EEEEecCCcEEEEeCCCC-c----------EEEEEcccccc
Q 009373          279 DRALL-----------KCLKVLR--HSDWVYGLAPHDT-TVASTSGSDVYIWDTNSG-C----------LLTVVNGAHVG  333 (536)
Q Consensus       279 d~~~~-----------~~~~~~~--~~~~v~~~~~~~~-~l~~~~d~~i~i~d~~~~-~----------~~~~~~~~~~~  333 (536)
                      -....           .....+.  ....|..++.... .++...+|.|+.|-.... +          ....+......
T Consensus       132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~  211 (389)
T 3kci_A          132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH  211 (389)
T ss_dssp             ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS
T ss_pred             eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC
Confidence            54321           1111111  2236777775444 455555899999965331 0          11122111223


Q ss_pred             ceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc------cccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEEC
Q 009373          334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       334 ~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~  407 (536)
                      .|..++........++-..||.|+.|-.......      ....+..........|..++....+.++-..||.|+.|-.
T Consensus       212 ~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~  291 (389)
T 3kci_A          212 RVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGK  291 (389)
T ss_dssp             CEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             eEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeC
Confidence            4666665433355666678999999975432211      0001111111123357788877778788889999999987


Q ss_pred             CcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          408 RKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ...-+.........       ..+.....-....|..++......+.-..||.|+.|-....-++
T Consensus       292 n~~GqLG~g~~~~~-------~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqL  349 (389)
T 3kci_A          292 GDYHRLGHGSDDHV-------RRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQL  349 (389)
T ss_dssp             CGGGTTCSSSCCCE-------EEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTT
T ss_pred             CCCCCCCCCCCccc-------cCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcC
Confidence            65443332211110       00111111122457778877777777788999999998765443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.01  E-value=0.22  Score=47.31  Aligned_cols=143  Identities=14%  Similarity=0.123  Sum_probs=91.2

Q ss_pred             eCCEEEEEecCCeEEEEeCCCceEeEeeecc-----ccEEE--EeecCCEEEEecCCcEEEEeCCCCc------------
Q 009373          262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHS-----DWVYG--LAPHDTTVASTSGSDVYIWDTNSGC------------  322 (536)
Q Consensus       262 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~v~~--~~~~~~~l~~~~d~~i~i~d~~~~~------------  322 (536)
                      ++..++.+- ++.||.-++......+.+..+     ..+..  ++|+|++|+..++..|.|..+..+.            
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence            666666554 478888887754444444422     13443  4499999999999999999887332            


Q ss_pred             EEEEEccc-----cccceEEEEEeCCC---CEEEEEcCCCcEEEEEcccCccccc-cc---eeeeccCCCCCeEEEEEcC
Q 009373          323 LLTVVNGA-----HVGNTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCTEAN-VL---LVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       323 ~~~~~~~~-----~~~~i~~l~~~~~~---~~l~tg~~dg~i~iwd~~~~~~~~~-~~---~~~~~~~h~~~v~~l~~~~  390 (536)
                      ..+.+.-+     ...+|..+.|+|-+   ..|++-..|+.|++||+......+. +.   ....+......|.+++|.+
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence            12233222     24679999999954   5899999999999999987432111 00   0011223346788999965


Q ss_pred             --CeEEE--EeCCCcEEEE
Q 009373          391 --PWLVS--AAGDGKLSLI  405 (536)
Q Consensus       391 --~~l~s--~s~dg~i~vw  405 (536)
                        -.|+.  .+.+|.|+-.
T Consensus       190 ~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TSSCEEEEECTTSCEEEEE
T ss_pred             CCcEEEEEecCCCCCEEEE
Confidence              34444  4577888754

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.99  E-value=0.83  Score=41.30  Aligned_cols=221  Identities=15%  Similarity=0.037  Sum_probs=119.5

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccC
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      .|..|+....  +.+.-. ||.|..|-....-.+..-......|..++......+.-. ||.|+.|-.......-     
T Consensus        25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg-----   95 (282)
T 3qhy_B           25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT-----   95 (282)
T ss_dssp             SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTC-----
T ss_pred             CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCC-----
Confidence            4566655432  222224 888888876543222111111234566664444433334 9999999754321100     


Q ss_pred             cccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCc-eEeEeeeccccEEEEeecCCEEEEecCCcEEEEeC
Q 009373          240 SEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALL-KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDT  318 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~  318 (536)
                          .+    ..-...|..++......+.-. ||.|..|-.... +.-........|..++......++-.++.|..|-.
T Consensus        96 ----~P----~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~~G~v~~wG~  166 (282)
T 3qhy_B           96 ----VP----AEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGD  166 (282)
T ss_dssp             ----CC----GGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEEC
T ss_pred             ----CC----cccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEECCEEEEecC
Confidence                00    011347888888776666667 999999975542 22111123456777774444333333899999976


Q ss_pred             CCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeC
Q 009373          319 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG  398 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~  398 (536)
                      .....+.. +......|..++..... .++.  .||.|+.|-.........  +.    .....|..++....+.++-. 
T Consensus       167 n~~gqlg~-p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~--p~----~~~~~v~~i~~G~~h~~al~-  235 (282)
T 3qhy_B          167 NYFGQTTV-PAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTV--PT----EALSGVSAIASGEWYSLALK-  235 (282)
T ss_dssp             CTTSTTSC-CGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCC--CG----GGGSSCCEEEECSSCEEEEE-
T ss_pred             CCCCCCCC-ceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCC--Cc----ccCCCceEEEcCCCEEEEEE-
Confidence            54322211 11123456676654332 2333  599999997655432211  11    11235777877665555555 


Q ss_pred             CCcEEEEECCc
Q 009373          399 DGKLSLIDVRK  409 (536)
Q Consensus       399 dg~i~vwd~~~  409 (536)
                      ||.|+.|-...
T Consensus       236 ~g~v~~wG~n~  246 (282)
T 3qhy_B          236 NGKVIAWGSSR  246 (282)
T ss_dssp             TTEEEEESTTC
T ss_pred             CCEEEEecCCC
Confidence            99999997654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.92  E-value=1  Score=41.38  Aligned_cols=148  Identities=10%  Similarity=0.068  Sum_probs=92.4

Q ss_pred             EEecCCCEEEEEe-CCCcEEEEEcccCccceecccCcccccceEEeeC----C--ccCEEEEEE---eC-CEEEEEec--
Q 009373          205 AVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE----H--EGPITSLAL---DL-TRIYSGSW--  271 (536)
Q Consensus       205 ~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----h--~~~v~~l~~---~~-~~l~s~s~--  271 (536)
                      .+......++.++ ..|+|..|+...+....           . .+.+    .  ...+..|.+   |+ +.|+....  
T Consensus        19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~-----------~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~   86 (334)
T 2p9w_A           19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN-----------V-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA   86 (334)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTTCCEEE-----------E-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred             cCcCCCCEEEEEeccCCEEEEEcCCCCeEEE-----------E-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence            4444445555555 78999999986442111           1 1111    0  113467788   33 34444333  


Q ss_pred             ------------CCeEEEEeCC---CceEeEeeec-----c---------ccEEEEe--ecCCEEEEec-C-CcEEEEeC
Q 009373          272 ------------DMTVRVWDRA---LLKCLKVLRH-----S---------DWVYGLA--PHDTTVASTS-G-SDVYIWDT  318 (536)
Q Consensus       272 ------------dg~i~iwd~~---~~~~~~~~~~-----~---------~~v~~~~--~~~~~l~~~~-d-~~i~i~d~  318 (536)
                                  +..|..||+.   +++.+.....     .         .....+.  ++|+..++++ . +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                        6789999999   7877665541     1         1245555  7888888777 7 78887777


Q ss_pred             CCCcEEEEEcc----ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          319 NSGCLLTVVNG----AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       319 ~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      ...........    ......+.++++|+|..|++....|.+..+|+...
T Consensus       167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence            64422211111    11224679999999998888877999999998843

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.77  E-value=2.1  Score=43.80  Aligned_cols=191  Identities=12%  Similarity=-0.027  Sum_probs=113.0

Q ss_pred             cccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCccc
Q 009373          158 TEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVLPH  233 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~~~  233 (536)
                      -..+..++|++.+..| ++-..++.|..+++........+..  ....-+++.+.+. +.++-...+.|.+.++..... 
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-  114 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-  114 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-
Confidence            3467899999865554 4555678999999875533332222  2233456665444 445555567888888754321 


Q ss_pred             eecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEec--CCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEE
Q 009373          234 LFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVAS  307 (536)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~  307 (536)
                                  .......-.....|++++  ..|+....  .+.|...++...........-.....++  +.+..|+.
T Consensus       115 ------------~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~  182 (628)
T 4a0p_A          115 ------------QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYW  182 (628)
T ss_dssp             ------------EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEE
T ss_pred             ------------EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEE
Confidence                        111112334567888863  56665553  4677777776544333333334455565  54555554


Q ss_pred             ec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          308 TS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       308 ~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +.  .+.|..+|+..... ..+. .......++++.. +.++++-...+.|...|..++
T Consensus       183 aD~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          183 TDLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             EETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence            44  57899999876543 2332 2334566788765 455666666788988887665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.43  E-value=0.0058  Score=62.59  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=31.9

Q ss_pred             ccCCcHHHHHHHhcCC-ChhhHHHHhhhhHHHHHH
Q 009373           64 ITDLPPALISEILNCL-DPKELGIVSCVSPILHRL   97 (536)
Q Consensus        64 l~~Lp~ei~~~I~~~L-~~~~l~~~~~v~~~~~~l   97 (536)
                      ...||+|++.+||+|| +++++.+++.|||+|+.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3479999999999999 899999999999999998

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.42  E-value=2.7  Score=42.88  Aligned_cols=211  Identities=9%  Similarity=-0.067  Sum_probs=120.3

Q ss_pred             CCCcEEEEECCCCceeeeeC--C-CCceEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCc
Q 009373          178 YDSIVRMWHLEDGFSIASSK--P-LGCTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE  253 (536)
Q Consensus       178 ~dg~v~iwd~~~~~~~~~~~--~-~~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~  253 (536)
                      ....|+..++++......+.  + ....-+++.+.++.| ++-..++.|..+++....             ....+....
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-------------~~~v~~~g~   79 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-------------LEHVVEFGL   79 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-------------CEEEECSSC
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-------------cEEEEeCCC
Confidence            45678999998765433322  2 122335566655544 455567888888875432             111111112


Q ss_pred             cCEEEEEEe--CCE-EEEEecCCeEEEEeCCCceEeEee-eccccEEEEe--ecCCEEEEec---CCcEEEEeCCCCcEE
Q 009373          254 GPITSLALD--LTR-IYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLA--PHDTTVASTS---GSDVYIWDTNSGCLL  324 (536)
Q Consensus       254 ~~v~~l~~~--~~~-l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~--~~~~~l~~~~---d~~i~i~d~~~~~~~  324 (536)
                      .....++++  ++. +++-...+.|.+.++........+ ..-.....++  |....|+.+.   .+.|...++......
T Consensus        80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~  159 (628)
T 4a0p_A           80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT  159 (628)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence            334566663  444 455556688999998654332222 2223345555  5344444433   467888887655433


Q ss_pred             EEEccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeC-CCcE
Q 009373          325 TVVNGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAG-DGKL  402 (536)
Q Consensus       325 ~~~~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-dg~i  402 (536)
                      ....  .......++++++++.|..+ ...+.|..+|+.....    ..   +........+|++..+.|+.+.. .+.|
T Consensus       160 ~l~~--~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~----~v---~~~~l~~P~glav~~~~ly~tD~~~~~I  230 (628)
T 4a0p_A          160 TLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR----EV---IADDLPHPFGLTQYQDYIYWTDWSRRSI  230 (628)
T ss_dssp             EEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EE---EEECCSCEEEEEEETTEEEEEETTTTEE
T ss_pred             EEEC--CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce----EE---eeccCCCceEEEEECCEEEEecCCCCEE
Confidence            3332  44578899999976655554 5567899999876421    11   22233455688887777766665 6788


Q ss_pred             EEEECCcc
Q 009373          403 SLIDVRKL  410 (536)
Q Consensus       403 ~vwd~~~~  410 (536)
                      ...|..++
T Consensus       231 ~~~dk~tg  238 (628)
T 4a0p_A          231 ERANKTSG  238 (628)
T ss_dssp             EEEETTTC
T ss_pred             EEEECCCC
Confidence            88886544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=95.39  E-value=1.5  Score=39.62  Aligned_cols=221  Identities=15%  Similarity=0.056  Sum_probs=121.5

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCC
Q 009373          202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRA  281 (536)
Q Consensus       202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~  281 (536)
                      .|..++......+.-. ||.|+.|-.......-         .+    ......|..++......+.-. ||.|..|-..
T Consensus        25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg---------~p----~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n   89 (282)
T 3qhy_B           25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLT---------MP----AATQSGVDAIAAGNYHSLALK-DGEVIAWGGN   89 (282)
T ss_dssp             SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTS---------CC----GGGGSCCCEEEECSSEEEEEE-TTEEEEEECC
T ss_pred             CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCC---------CC----ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCC
Confidence            4556664444444445 9999999754321100         00    012336778887554444445 9999999755


Q ss_pred             CceEeEe-eeccccEEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          282 LLKCLKV-LRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       282 ~~~~~~~-~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      ..-.+.. ......|..++ -....++.. +|.|..|-....-.+-. .......|..++...... ++ -. ||.|..|
T Consensus        90 ~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~-~~-l~-~G~v~~w  164 (282)
T 3qhy_B           90 EDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTA-LA-VK-NGGVIAW  164 (282)
T ss_dssp             TTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEE-EE-EE-TTEEEEE
T ss_pred             CCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEE-EE-EE-CCEEEEe
Confidence            3222111 11234677777 444556666 99999997654322111 111334566666543322 22 23 7999999


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  439 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (536)
                      -.........  +    ..-...|..++....+.+.- .||.|+.|-....-+...+.                   ...
T Consensus       165 G~n~~gqlg~--p----~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~-------------------~~~  218 (282)
T 3qhy_B          165 GDNYFGQTTV--P----AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT-------------------EAL  218 (282)
T ss_dssp             ECCTTSTTSC--C----GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG-------------------GGG
T ss_pred             cCCCCCCCCC--c----eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc-------------------ccC
Confidence            7655432111  1    11135688888776555555 69999999876543322110                   011


Q ss_pred             ccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          440 CNLLSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       440 ~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      ..+..++......+.-. ||.|+.|-....
T Consensus       219 ~~v~~i~~G~~h~~al~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          219 SGVSAIASGEWYSLALK-NGKVIAWGSSRT  247 (282)
T ss_dssp             SSCCEEEECSSCEEEEE-TTEEEEESTTCC
T ss_pred             CCceEEEcCCCEEEEEE-CCEEEEecCCCC
Confidence            23556665555433334 999999987764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.34  E-value=2.9  Score=42.62  Aligned_cols=194  Identities=13%  Similarity=0.043  Sum_probs=102.7

Q ss_pred             ccccEEEEEEecCCCEEEEE-eCCCcEEEEECCCCce-eeeeCC--CCceEEEEecCCC-EEEEEeCCCcEEEEEcccCc
Q 009373          157 HTEAVLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFS-IASSKP--LGCTIRAVAADKK-LLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sg-s~dg~v~iwd~~~~~~-~~~~~~--~~~~v~~~~~~~~-~l~sg~~dg~i~vwd~~~~~  231 (536)
                      .-.....++|++.+..|+-+ ...+.|..++++.... ...+..  ....-+++.+.++ ++++-...+.|.+.++....
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~  117 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL  117 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence            34457799999866655544 4568899999876532 122222  2233456666444 55555667889999876532


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEEeC--CEEEEEec--CCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCE
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLALDL--TRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT  304 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~--dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~  304 (536)
                      .             .......-.....|++++  +.|+....  .+.|...++.......... .-.....++  +.+..
T Consensus       118 ~-------------~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~  184 (619)
T 3s94_A          118 R-------------KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK  184 (619)
T ss_dssp             C-------------EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTE
T ss_pred             E-------------EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCE
Confidence            1             111112334456777743  45555543  3566666665332222222 233445555  44555


Q ss_pred             EEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          305 VASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       305 l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      |+.+.  .+.|..+|+.......... +......++++..+ .++++-...+.|...|..++.
T Consensus       185 LY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~  245 (619)
T 3s94_A          185 LYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE  245 (619)
T ss_dssp             EEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred             EEEEeCCCCeEEEecCCCCccEEEEe-CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence            54444  5789999987543332221 12223456677655 455555567889999886653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=94.76  E-value=3  Score=39.79  Aligned_cols=260  Identities=9%  Similarity=0.024  Sum_probs=148.3

Q ss_pred             CCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEE
Q 009373          178 YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPIT  257 (536)
Q Consensus       178 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  257 (536)
                      .+..|.|-|+.++..+..-. -.....-++|..+.++.-. ..++.++|+++..             ...... ...+|.
T Consensus        46 ~~~~vvIiDl~~~~~~~rrp-i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~-------------klks~~-~~e~Vv  109 (494)
T 1bpo_A           46 EQAQVVIIDMNDPSNPIRRP-ISADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------------KMKAHT-MTDDVT  109 (494)
T ss_dssp             TCCEEEEEETTSTTSCEEEE-CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTE-------------EEEEEE-CSSCCC
T ss_pred             CCCeEEEEECCCCCcceecc-cccceeeeCCCCcEEEEec-CCeEEEEchHHhh-------------hhccee-cCCCce
Confidence            34579999998875543221 1122223457777666655 7899999997752             222221 234566


Q ss_pred             EEEE-eCCEEEEEecCCeEEEEeCCC-ceEeEeee-c----cccEEEEe--ecCCEEEEec--------CCcEEEEeCCC
Q 009373          258 SLAL-DLTRIYSGSWDMTVRVWDRAL-LKCLKVLR-H----SDWVYGLA--PHDTTVASTS--------GSDVYIWDTNS  320 (536)
Q Consensus       258 ~l~~-~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~-~----~~~v~~~~--~~~~~l~~~~--------d~~i~i~d~~~  320 (536)
                      --.| +.+.|+-.+ +..|+-|++.. ..+.+.+. |    ...|....  ++.+.++..+        .|.+.+|..+.
T Consensus       110 fWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          110 FWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             EEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             EEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence            6677 777776655 46899999964 34455554 2    33444443  6666655432        26789999876


Q ss_pred             CcEEEEEccccccceEEEEEeCCC---CEEEEEcCC---CcEEEEEcccCc---cccccceeeeccC---CCCCeEEEEE
Q 009373          321 GCLLTVVNGAHVGNTKSLARSHTG---DFLFTGGED---GAIHMYEIINDC---TEANVLLVATWIP---HTGPVNSLAF  388 (536)
Q Consensus       321 ~~~~~~~~~~~~~~i~~l~~~~~~---~~l~tg~~d---g~i~iwd~~~~~---~~~~~~~~~~~~~---h~~~v~~l~~  388 (536)
                      +... .+ .||......+...-+.   .+++.+...   +.++|.++....   .....+.+..+.+   -..-..++..
T Consensus       189 ~~sQ-~i-eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv  266 (494)
T 1bpo_A          189 KVSQ-PI-EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI  266 (494)
T ss_dssp             CCEE-EE-CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred             cccc-hh-eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence            6432 22 4676655444432111   234444332   789999985441   1111111221222   2344557777


Q ss_pred             cC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEec--CCEEEEecCCCeEEEE
Q 009373          389 EF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIG--ADRIVCGGEEGIVRIW  464 (536)
Q Consensus       389 ~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~sg~~Dg~i~vW  464 (536)
                      ++  +.++.-+.-|.|++||+.++...+..                   +-....|+.-+++  ..-++.....|.|.--
T Consensus       267 s~kygviyviTK~G~i~lyDleTgt~i~~n-------------------rIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          267 SEKHDVVFLITKYGYIHLYDLETGTCIYMN-------------------RISGETIFVTAPHEATAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             ETTTTEEEEEETTSEEEEEETTTCCEEEEE-------------------ECCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred             cccCCEEEEEecCceEEEEecccceeeeee-------------------cccCCceEEecccCCCCcEEEEccCceEEEE
Confidence            76  68889999999999999986443321                   1122333333332  2356666678888777


Q ss_pred             eCCchhhHHHH
Q 009373          465 NFSQAFEIERR  475 (536)
Q Consensus       465 ~~~~~~~~~~~  475 (536)
                      .+++...+.-.
T Consensus       328 ~v~e~~ivpyi  338 (494)
T 1bpo_A          328 CVEEENIIPYI  338 (494)
T ss_dssp             EECTTTHHHHH
T ss_pred             EEccccchhhh
Confidence            77776655443

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=93.98  E-value=4.5  Score=38.68  Aligned_cols=302  Identities=15%  Similarity=0.079  Sum_probs=159.1

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCCC-c----------eeeeeC-CCCceEEEEecCCCEEEEEeCC-CcEEE
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG-F----------SIASSK-PLGCTIRAVAADKKLLVAGGTD-GFIHC  224 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~-~----------~~~~~~-~~~~~v~~~~~~~~~l~sg~~d-g~i~v  224 (536)
                      ...|..|+.-  ..+.+.-..||.|..|=.... +          ....+. .....|..++......+.-..+ +.|+.
T Consensus        15 ~~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~   92 (406)
T 4d9s_A           15 PRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS   92 (406)
T ss_dssp             CCCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred             ccceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence            3456666553  445555667888888864321 1          011111 1223577777666655555555 49999


Q ss_pred             EEcccCccceecccCcccccceEEeeC-CccCEEEEEEeCCEEEEEecCCeEEEEeCCCc-e----------EeEeee--
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWDMTVRVWDRALL-K----------CLKVLR--  290 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~-~----------~~~~~~--  290 (536)
                      |-.......-.. .......+ ..+.. ....|..++......+....||.|..|-.... +          ....+.  
T Consensus        93 wG~n~~GqLG~g-~~~~~~~p-~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~  170 (406)
T 4d9s_A           93 WGWGDFGRLGHG-NSSDLFTP-LPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF  170 (406)
T ss_dssp             EECCGGGTTCSS-SCCCEEEE-EECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred             EcCCCCcCCCCC-CCCccccc-eEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence            964332110000 00000001 11111 23368888887777778889999999964321 1          111111  


Q ss_pred             ccccEEEEeecCC-EEEEecCCcEEEEeCCCC----------c-EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          291 HSDWVYGLAPHDT-TVASTSGSDVYIWDTNSG----------C-LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       291 ~~~~v~~~~~~~~-~l~~~~d~~i~i~d~~~~----------~-~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                      ....|..++.... .++...+|.|+.|-....          . ....+.......|..++..  ..+.++-..+|.|+.
T Consensus       171 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~  248 (406)
T 4d9s_A          171 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYT  248 (406)
T ss_dssp             TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEE
T ss_pred             CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEE
Confidence            2236777775444 445555899999964321          1 1111111112345555443  334455567889998


Q ss_pred             EEcccCccc------cccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373          359 YEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  432 (536)
Q Consensus       359 wd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (536)
                      |-.......      ....+..........|..++-...+.++-..||.|+.|-....-+..........       .+.
T Consensus       249 wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~-------~p~  321 (406)
T 4d9s_A          249 YGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC-------SPV  321 (406)
T ss_dssp             EECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE-------EEE
T ss_pred             eeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCc-------cCE
Confidence            875433211      0001111111123457777777777788889999999987654333222111110       011


Q ss_pred             eeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          433 RMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       433 ~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      .........|..++....+.+.-..||.|+.|-....-++
T Consensus       322 ~v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqL  361 (406)
T 4d9s_A          322 QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL  361 (406)
T ss_dssp             EECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTT
T ss_pred             EEeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCcc
Confidence            1111123457788877777777778999999997654433

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.67  E-value=5.5  Score=41.25  Aligned_cols=198  Identities=10%  Similarity=0.038  Sum_probs=101.5

Q ss_pred             cCCCEEEEEeCC----CcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC------eE
Q 009373          208 ADKKLLVAGGTD----GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM------TV  275 (536)
Q Consensus       208 ~~~~~l~sg~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg------~i  275 (536)
                      .++.+++.|+.+    ..+.+||..++.......... ..    ........-....+  ++..++.|+.++      .+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p-~~----~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv  470 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVS-SS----EVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDN  470 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCC-CS----CCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCC-CC----CCCccccceEEEEEccCCEEEEEcCCCCCCCccccE
Confidence            667778888754    457788876653211110000 00    01111112233445  566667776543      57


Q ss_pred             EEEeCCCceEeEe--eec-cccEEEEe-ecCCEEEEec-C--CcEEEEeCCCCcEEEEEcc----ccccceEEEEEeCC-
Q 009373          276 RVWDRALLKCLKV--LRH-SDWVYGLA-PHDTTVASTS-G--SDVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHT-  343 (536)
Q Consensus       276 ~iwd~~~~~~~~~--~~~-~~~v~~~~-~~~~~l~~~~-d--~~i~i~d~~~~~~~~~~~~----~~~~~i~~l~~~~~-  343 (536)
                      .+||..+.+-...  +.. ...-.++. .++.+++.|+ +  +.+.+||+.+......-..    .......++.+..+ 
T Consensus       471 ~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          471 WIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             EEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             EEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            8899887543322  111 11112233 3778777776 3  2799999998764433210    01112233555555 


Q ss_pred             CCEEEEEcC--C-----CcEEEEEcccCcc--ccccceeeec-cCCCCCeEEEEEc-CCeEEEEeC--------CCcEEE
Q 009373          344 GDFLFTGGE--D-----GAIHMYEIINDCT--EANVLLVATW-IPHTGPVNSLAFE-FPWLVSAAG--------DGKLSL  404 (536)
Q Consensus       344 ~~~l~tg~~--d-----g~i~iwd~~~~~~--~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~s~s~--------dg~i~v  404 (536)
                      +.+++.|+.  +     ..+.+||+.+..-  ......+... ......-.++.+. +..++.|+.        ...|.+
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~  630 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS  630 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence            667777765  2     3588999887741  0001122211 1111222445556 666667764        345889


Q ss_pred             EECCcc
Q 009373          405 IDVRKL  410 (536)
Q Consensus       405 wd~~~~  410 (536)
                      ||+.+.
T Consensus       631 yd~~t~  636 (695)
T 2zwa_A          631 LDPLSE  636 (695)
T ss_dssp             EETTTT
T ss_pred             EECCCC
Confidence            998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.58  E-value=2.8  Score=43.45  Aligned_cols=186  Identities=10%  Similarity=0.052  Sum_probs=96.4

Q ss_pred             cCCCEEEEEeCC----CcEEEEECCCCceeeee--------CCCC-ceEEEEec-CCCEEEEEeCCC------cEEEEEc
Q 009373          168 ASAKLLFTSGYD----SIVRMWHLEDGFSIASS--------KPLG-CTIRAVAA-DKKLLVAGGTDG------FIHCWRA  227 (536)
Q Consensus       168 ~~~~~l~sgs~d----g~v~iwd~~~~~~~~~~--------~~~~-~~v~~~~~-~~~~l~sg~~dg------~i~vwd~  227 (536)
                      .++.+++.|+.+    ..+.+||..+++-...-        .... ....+... ++.+++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            356777777753    46888998876432221        1111 12222223 778888887643      4778887


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCC--eEEEEeCCCceEeEeee--------ccccEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDM--TVRVWDRALLKCLKVLR--------HSDWVY  296 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~--------~~~~v~  296 (536)
                      .+..-..           ...+......-.+..+ ++..++.|+.++  .+.+||..+.+-...-.        ......
T Consensus       476 ~t~~W~~-----------~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~  544 (695)
T 2zwa_A          476 KTREWSM-----------IKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL  544 (695)
T ss_dssp             TTTEEEE-----------CCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred             CCCcEEE-----------CCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence            6643111           1111111122233343 777788887655  68999998765433221        011111


Q ss_pred             EEeec-CCEEEEec-C-------CcEEEEeCCCCcE-----EEEEcc--ccccceEEEEEeCCCCEEEEEcCC-------
Q 009373          297 GLAPH-DTTVASTS-G-------SDVYIWDTNSGCL-----LTVVNG--AHVGNTKSLARSHTGDFLFTGGED-------  353 (536)
Q Consensus       297 ~~~~~-~~~l~~~~-d-------~~i~i~d~~~~~~-----~~~~~~--~~~~~i~~l~~~~~~~~l~tg~~d-------  353 (536)
                      .+... +++++.|+ +       +.+.+||+.+...     ...+..  .....-.++....++.+++.|+.+       
T Consensus       545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~  624 (695)
T 2zwa_A          545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR  624 (695)
T ss_dssp             EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCT
T ss_pred             EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCC
Confidence            22222 55666665 1       3489999988871     222211  011111122333336777777743       


Q ss_pred             -CcEEEEEcccC
Q 009373          354 -GAIHMYEIIND  364 (536)
Q Consensus       354 -g~i~iwd~~~~  364 (536)
                       ..+.+||+.+.
T Consensus       625 ~~~v~~yd~~t~  636 (695)
T 2zwa_A          625 TNSIISLDPLSE  636 (695)
T ss_dssp             TTSEEEEETTTT
T ss_pred             CCeEEEEECCCC
Confidence             45888887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=93.35  E-value=3.7  Score=45.51  Aligned_cols=186  Identities=12%  Similarity=0.105  Sum_probs=102.2

Q ss_pred             EecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCcc--ceecccCccc
Q 009373          166 VLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLP--HLFDISGSEK  242 (536)
Q Consensus       166 ~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~~~~~  242 (536)
                      .+|..+.+|-=. ..++.|||+++...++.+.-. .+|.-+. .+.+.|+-.+ +..|+.|++.....  .+|+....  
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~--  147 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSS--  147 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchh--
Confidence            567777666554 689999999998888776543 3455555 3334433332 45799999964321  12221111  


Q ss_pred             ccceEEeeCCccCEEEEEE--eCCEEEEE-------ecCCeEEEEeCCCceEeEeeeccccEEEEe----ec-CCEEEEe
Q 009373          243 QNTQFRLWEHEGPITSLAL--DLTRIYSG-------SWDMTVRVWDRALLKCLKVLRHSDWVYGLA----PH-DTTVAST  308 (536)
Q Consensus       243 ~~~~~~~~~h~~~v~~l~~--~~~~l~s~-------s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~----~~-~~~l~~~  308 (536)
                            +.  ...|.....  +.++++..       .-.|.+.+|..+.+.....-.|...-..+.    +. ..+++.+
T Consensus       148 ------L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~  219 (1630)
T 1xi4_A          148 ------LA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFA  219 (1630)
T ss_pred             ------cc--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEE
Confidence                  11  233444444  33443322       234788888876543222112333332222    11 1222222


Q ss_pred             c----CCcEEEEeCCCC---cE------EEEEcc--ccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          309 S----GSDVYIWDTNSG---CL------LTVVNG--AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       309 ~----d~~i~i~d~~~~---~~------~~~~~~--~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .    ++.++|.++...   .+      +..+..  ....-..++..++.-..+..-+.-|.|++||+.++
T Consensus       220 ~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~  290 (1630)
T 1xi4_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG  290 (1630)
T ss_pred             EecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence            2    368888888543   11      111111  12233456777888888888889999999999998

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.87  E-value=7.7  Score=38.01  Aligned_cols=193  Identities=8%  Similarity=-0.048  Sum_probs=101.8

Q ss_pred             cEEEEEEecC-C-CEEEEEeCCCcEEEEECCCCceeeeeCCC-----CceEEEE-------ecCCCEEEEEeCCC-c---
Q 009373          160 AVLTVFVLAS-A-KLLFTSGYDSIVRMWHLEDGFSIASSKPL-----GCTIRAV-------AADKKLLVAGGTDG-F---  221 (536)
Q Consensus       160 ~V~~v~~~~~-~-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-----~~~v~~~-------~~~~~~l~sg~~dg-~---  221 (536)
                      ....|+|+|. + +++++-...+.|++.|++++.........     .....++       .++++.|+++...+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            3568899983 4 44544444577999999887665444322     1344667       77888666666554 2   


Q ss_pred             ---EEEEEccc-CccceecccCcccccceEEeeCCccCEEEEEEe---CCEEEEEecCCeEEEEeCC-------CceE--
Q 009373          222 ---IHCWRAVE-VLPHLFDISGSEKQNTQFRLWEHEGPITSLALD---LTRIYSGSWDMTVRVWDRA-------LLKC--  285 (536)
Q Consensus       222 ---i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~iwd~~-------~~~~--  285 (536)
                         |.+.+... +..     ...........+ .|   ...++++   +.++++-..++.|..+|+.       ++..  
T Consensus       220 ~~~V~~i~r~~~G~~-----~~~~~~~~v~~~-~~---p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t  290 (496)
T 3kya_A          220 SPSVYIIKRNADGTF-----DDRSDIQLIAAY-KQ---CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD  290 (496)
T ss_dssp             EEEEEEEECCTTSCC-----STTSCEEEEEEE-SC---CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred             CceEEEEecCCCCce-----eecccceeeccC-CC---ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec
Confidence               55554322 110     000000011111 22   2344553   3445566677889999987       4543  


Q ss_pred             ---------eEe-ee--ccccEE--EEeecCCEEEEe-c-CCcEEEEeC--CCCcE--EEEEcc-----cc---------
Q 009373          286 ---------LKV-LR--HSDWVY--GLAPHDTTVAST-S-GSDVYIWDT--NSGCL--LTVVNG-----AH---------  331 (536)
Q Consensus       286 ---------~~~-~~--~~~~v~--~~~~~~~~l~~~-~-d~~i~i~d~--~~~~~--~~~~~~-----~~---------  331 (536)
                               ... +.  .....+  ++.++++.++.+ . ...|+.++.  .++..  ...+-.     +.         
T Consensus       291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~  370 (496)
T 3kya_A          291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEAR  370 (496)
T ss_dssp             CBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCB
T ss_pred             ccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccc
Confidence                     111 22  223333  445888854444 3 678888554  43322  122211     00         


Q ss_pred             ccceE-EEEEe-------CCCCEEEEEcCCCcEEEEEc
Q 009373          332 VGNTK-SLARS-------HTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       332 ~~~i~-~l~~~-------~~~~~l~tg~~dg~i~iwd~  361 (536)
                      -.... .++..       ++|.++++-.....|+.++.
T Consensus       371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence            11244 45554       45677777777888999983

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.65  E-value=8.2  Score=37.80  Aligned_cols=201  Identities=9%  Similarity=-0.028  Sum_probs=107.8

Q ss_pred             ccEEEEEE-------ecCCCEEEEEeCCC-------cEEEEECCC-Cc--------eeeeeCCCCceEEEEec-CCCEEE
Q 009373          159 EAVLTVFV-------LASAKLLFTSGYDS-------IVRMWHLED-GF--------SIASSKPLGCTIRAVAA-DKKLLV  214 (536)
Q Consensus       159 ~~V~~v~~-------~~~~~~l~sgs~dg-------~v~iwd~~~-~~--------~~~~~~~~~~~v~~~~~-~~~~l~  214 (536)
                      .....++|       +++++.|+.+...+       .|.+++... +.        .+..+. |. .-.++.+ ++.+++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p-~giavdp~~g~LYv  263 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QC-NGATIHPINGELYF  263 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CC-CCEEECTTTCCEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-Cc-eEEEEcCCCCeEEE
Confidence            35889999       99999666666554       266665443 22        122221 22 2235667 455566


Q ss_pred             EEeCCCcEEEEEcc-------cCcc-ceecccCcccccceEEeeCCccCEEEEEE--eCCEEE-EEecCCeEEEEeC--C
Q 009373          215 AGGTDGFIHCWRAV-------EVLP-HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIY-SGSWDMTVRVWDR--A  281 (536)
Q Consensus       215 sg~~dg~i~vwd~~-------~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~s~dg~i~iwd~--~  281 (536)
                      +-..++.|..+|+.       ++.. .............+... +....-..+++  +++.|+ +-+..+.|+.++.  .
T Consensus       264 td~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~  342 (496)
T 3kya_A          264 NSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI  342 (496)
T ss_dssp             EETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             EECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC
Confidence            66677889999987       4421 00000000000011122 22334567888  566544 4456678888654  3


Q ss_pred             CceEe--Eeee-------------------ccccEEEEe-------ecCCEEEEec-CCcEEEEeCCCCcEEEEEcc---
Q 009373          282 LLKCL--KVLR-------------------HSDWVYGLA-------PHDTTVASTS-GSDVYIWDTNSGCLLTVVNG---  329 (536)
Q Consensus       282 ~~~~~--~~~~-------------------~~~~v~~~~-------~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~---  329 (536)
                      ++...  ..+.                   ++.....+.       ..+.++++-. +..|+.++ .+|. +.++..   
T Consensus       343 ~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~  420 (496)
T 3kya_A          343 KKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGA  420 (496)
T ss_dssp             TTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCT
T ss_pred             cceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccc
Confidence            33220  1111                   011022333       2345555555 68899998 4564 333321   


Q ss_pred             ----------cc----------ccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccC
Q 009373          330 ----------AH----------VGNTKSLARSHT-GDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       330 ----------~~----------~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~  364 (536)
                                +.          -.....|+++++ |.++++=..+..|+.+++...
T Consensus       421 ~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          421 STSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             THHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             cccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence                      10          124678999996 777777777888999988765

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=92.33  E-value=8.2  Score=37.03  Aligned_cols=258  Identities=12%  Similarity=0.007  Sum_probs=142.2

Q ss_pred             eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCc-ccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeC
Q 009373          202 TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGS-EKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       202 ~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~  280 (536)
                      .+..++..+...+.-..||.|+.|-.......-...... ....+. .+ .....|..++......+....||.|..|-.
T Consensus        76 ~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~-~v-~~~~~i~~va~G~~hs~al~~~G~v~~wG~  153 (423)
T 3mvd_K           76 DAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPD-LI-DLPGKALCISAGDSHSACLLEDGRVFAWGS  153 (423)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCE-EC-CCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred             CceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCe-EE-cCCCCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence            467777777888888899999999754321100000000 001111 11 123468888887777777889999999975


Q ss_pred             --C-CceEe--------Ee--eeccccEEEEeecC-CEEEEecCCcEEEEeCCCCc----------------------EE
Q 009373          281 --A-LLKCL--------KV--LRHSDWVYGLAPHD-TTVASTSGSDVYIWDTNSGC----------------------LL  324 (536)
Q Consensus       281 --~-~~~~~--------~~--~~~~~~v~~~~~~~-~~l~~~~d~~i~i~d~~~~~----------------------~~  324 (536)
                        . .++.-        ..  +.....|..++... ..++...+|.|+.|-....-                      ..
T Consensus       154 ~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p  233 (423)
T 3mvd_K          154 FRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRP  233 (423)
T ss_dssp             EECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSC
T ss_pred             CCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCC
Confidence              2 22210        11  11344677777444 44555568999999543210                      11


Q ss_pred             EEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc--------ccceeeeccCCCCCeEEEEEcCCeEEEE
Q 009373          325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA--------NVLLVATWIPHTGPVNSLAFEFPWLVSA  396 (536)
Q Consensus       325 ~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~h~~~v~~l~~~~~~l~s~  396 (536)
                      ..+.......|..++... ...++.-..+|.|..|-........        ...++..   ....|..|+....+.+.-
T Consensus       234 ~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~---~~~~v~~ia~G~~ht~al  309 (423)
T 3mvd_K          234 TQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT---ELKDIRHIAGGQHHTVIL  309 (423)
T ss_dssp             EEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE---CCCSEEEEEECSSEEEEE
T ss_pred             eEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc---CCCCeEEEEcccCeEEEE
Confidence            111111223455555432 2223333688999999765432110        0111111   134678888777888888


Q ss_pred             eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          397 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       397 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ..||.|+.|-....-+...............       +......|..++....+.+.-..||.|+.|-....-++
T Consensus       310 t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~-------v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqL  378 (423)
T 3mvd_K          310 TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTI-------VKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL  378 (423)
T ss_dssp             ETTCCEEEEECCGGGTTCSSSCCSCEEEEEE-------CTTCCSCEEEEEEETTEEEEEETTSCEEEEECCTTSCS
T ss_pred             eCCCcEEEEECCCCCCCCCCCccccccCceE-------eccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCCCCCC
Confidence            8999999998765433332221111111001       11111267788877776666688999999987764333

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=92.32  E-value=8  Score=36.90  Aligned_cols=260  Identities=14%  Similarity=0.090  Sum_probs=138.8

Q ss_pred             CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC-CccCEEEEEEeCCEEEEEecC-CeEE
Q 009373          199 LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE-HEGPITSLALDLTRIYSGSWD-MTVR  276 (536)
Q Consensus       199 ~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~d-g~i~  276 (536)
                      ....|..++......+.-..||.|+.|-.......-....  ........+.. ....|..++......+....| +.|.
T Consensus        14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~   91 (406)
T 4d9s_A           14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDA--EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVY   91 (406)
T ss_dssp             -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSC--CCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEE
T ss_pred             CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCc--ccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEE
Confidence            3456777777777777778899999996533211000000  00001111111 124688888866666555665 4999


Q ss_pred             EEeCCCc---------eEe--Eeee--ccccEEEEeecCC-EEEEecCCcEEEEeCCCC-c----------EEEEEcccc
Q 009373          277 VWDRALL---------KCL--KVLR--HSDWVYGLAPHDT-TVASTSGSDVYIWDTNSG-C----------LLTVVNGAH  331 (536)
Q Consensus       277 iwd~~~~---------~~~--~~~~--~~~~v~~~~~~~~-~l~~~~d~~i~i~d~~~~-~----------~~~~~~~~~  331 (536)
                      .|-....         ...  ..+.  ....|..++.... .++...+|.|+.|-.... +          ....+....
T Consensus        92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~  171 (406)
T 4d9s_A           92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFE  171 (406)
T ss_dssp             EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGT
T ss_pred             EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccC
Confidence            9953321         011  1111  2336778875444 455556899999965432 1          111121111


Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc------cccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEE
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE------ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLI  405 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~------~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vw  405 (536)
                      ...|..++..  ..+.++-..||.|+.|-.......      ....+..........|..++....+.+.-..||.|+.|
T Consensus       172 ~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~w  249 (406)
T 4d9s_A          172 GIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY  249 (406)
T ss_dssp             TCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEE
T ss_pred             CCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEe
Confidence            2245555543  345555568999999975432211      01111111112235677888777888888899999999


Q ss_pred             ECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          406 DVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       406 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      -....-+..........       .+.....-....|..++....+.+.-..||.|+.|-....
T Consensus       250 G~n~~GqlG~g~~~~~~-------~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~  306 (406)
T 4d9s_A          250 GWSKYGQLGHGDLEDHL-------IPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKF  306 (406)
T ss_dssp             ECCTTSTTCSSSCCCEE-------EEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred             eCCCCCCCCCCCCcCcc-------ccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCC
Confidence            87654333222111110       0000111112346777777777777778999999987654

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=91.86  E-value=9.2  Score=36.57  Aligned_cols=259  Identities=14%  Similarity=0.033  Sum_probs=142.3

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc-CcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEe
Q 009373          201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS-GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd  279 (536)
                      ..|..++......+.-..||.|+.|-.......-.... ......+.. + .-...|..++......+....||.|..|-
T Consensus        59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~-v-~l~~~i~~va~G~~hs~alt~~G~v~~wG  136 (413)
T 1a12_A           59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGK-V-ELQEKVVQVSAGDSHTAALTDDGRVFLWG  136 (413)
T ss_dssp             SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEE-C-CCCSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeE-e-cCCCcEEEEecCCCeEEEEcCCCcEEEee
Confidence            56777777777777778999999997643211000000 000011111 1 12347888888777777888999999996


Q ss_pred             C--C-CceE-----------eEeeeccccEEEEeecC-CEEEEecCCcEEEEeCCCCcEE--------------------
Q 009373          280 R--A-LLKC-----------LKVLRHSDWVYGLAPHD-TTVASTSGSDVYIWDTNSGCLL--------------------  324 (536)
Q Consensus       280 ~--~-~~~~-----------~~~~~~~~~v~~~~~~~-~~l~~~~d~~i~i~d~~~~~~~--------------------  324 (536)
                      .  . .+++           ...+.....|..++... ..++...+|.|..|-....-.+                    
T Consensus       137 ~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~  216 (413)
T 1a12_A          137 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLL  216 (413)
T ss_dssp             CEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHH
T ss_pred             CCcCCCCccCcCCccccccCCEEecCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccc
Confidence            4  2 1111           11112344677777444 4455555899999965432110                    


Q ss_pred             --EEEccc-----cccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc--------cccceeeeccCCCCCeEEEEEc
Q 009373          325 --TVVNGA-----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE--------ANVLLVATWIPHTGPVNSLAFE  389 (536)
Q Consensus       325 --~~~~~~-----~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~~  389 (536)
                        ..+...     ....|..++...  .+.++-..||.|+.|-.......        ..+..+..+......|..++..
T Consensus       217 ~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G  294 (413)
T 1a12_A          217 VPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG  294 (413)
T ss_dssp             SCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC
T ss_pred             cCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecc
Confidence              001000     123455555543  33444457899999976543211        0111222222222458888877


Q ss_pred             CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCch
Q 009373          390 FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       390 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~  469 (536)
                      ..+.++-..||.|+.|-....-+............-..       +... ..|..++....+.+.-..||.|+.|-....
T Consensus       295 ~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~-------v~~l-~~v~~v~~G~~hs~alt~~G~v~~wG~n~~  366 (413)
T 1a12_A          295 QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL-------ISRL-PAVSSVACGASVGYAVTKDGRVFAWGMGTN  366 (413)
T ss_dssp             SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE-------CCSS-SSEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred             cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEE-------eccc-CceeEEEECcceEEEEeCCCCEEEecCCCC
Confidence            77778888999999998765433322111111100000       1111 167778877777777778999999987754


Q ss_pred             hh
Q 009373          470 FE  471 (536)
Q Consensus       470 ~~  471 (536)
                      .+
T Consensus       367 gq  368 (413)
T 1a12_A          367 YQ  368 (413)
T ss_dssp             ST
T ss_pred             CC
Confidence            33

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.39  E-value=11  Score=34.99  Aligned_cols=76  Identities=16%  Similarity=0.153  Sum_probs=43.4

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeeeC----C-CCceEEEEecC---CCEEEEEeC-C
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSK----P-LGCTIRAVAAD---KKLLVAGGT-D  219 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~----~-~~~~v~~~~~~---~~~l~sg~~-d  219 (536)
                      +..+-..-..-..|+|.|+|+++++ ..+|.|++++  +++.  +..+.    + ....-++++|+   +..|+++.. .
T Consensus        23 ~~~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           23 VEEVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             EEEEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            3344433445679999999996555 5679999998  4432  22221    1 11223455566   445555443 2


Q ss_pred             -----CcEEEEEccc
Q 009373          220 -----GFIHCWRAVE  229 (536)
Q Consensus       220 -----g~i~vwd~~~  229 (536)
                           +.|..++...
T Consensus       100 ~~~~~~~v~r~~~~~  114 (352)
T 2ism_A          100 EGGLRNQVVRLRHLG  114 (352)
T ss_dssp             TTSSEEEEEEEEECS
T ss_pred             CCCCccEEEEEEeCC
Confidence                 5677777653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=87.32  E-value=27  Score=35.42  Aligned_cols=155  Identities=9%  Similarity=-0.081  Sum_probs=83.4

Q ss_pred             cccEEEEEEecCCC-EEEEEeCCCcEEEEECCCCceeeee--CCCCceEEEEecCCCEEEEEeC--CCcEEEEEcccCcc
Q 009373          158 TEAVLTVFVLASAK-LLFTSGYDSIVRMWHLEDGFSIASS--KPLGCTIRAVAADKKLLVAGGT--DGFIHCWRAVEVLP  232 (536)
Q Consensus       158 ~~~V~~v~~~~~~~-~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~  232 (536)
                      -.....+++.+.+. ++++-...+.|.+.+++........  ......-+++.|.+..|+....  .+.|...++.... 
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-  161 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-  161 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-
Confidence            35678999998555 5555566789999998754332222  1122233556666555555443  3455555543221 


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEEe-cCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEe
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSGS-WDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAST  308 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~  308 (536)
                                  ........-.....|+++  ++.|+.+. ..+.|...|+.......... ......+++..+..++.+
T Consensus       162 ------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~t  229 (619)
T 3s94_A          162 ------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWT  229 (619)
T ss_dssp             ------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEE
T ss_pred             ------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEe
Confidence                        111111223456778885  45665554 55778888886543332222 112223455444455555


Q ss_pred             c--CCcEEEEeCCCCcEEE
Q 009373          309 S--GSDVYIWDTNSGCLLT  325 (536)
Q Consensus       309 ~--d~~i~i~d~~~~~~~~  325 (536)
                      .  .+.|...|..+++...
T Consensus       230 d~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          230 DWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             CTTTCSEEEEESSSCCCCE
T ss_pred             cCCCCEEEEEECCCCcccE
Confidence            4  5789999987775443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=87.07  E-value=14  Score=31.73  Aligned_cols=100  Identities=13%  Similarity=-0.023  Sum_probs=57.7

Q ss_pred             cCEEEEEEeC-CEEEEEecCCeEEEEeCCCceE------eEeee----ccccEEEEeecCCEEEEecCCcEEEEeCCCCc
Q 009373          254 GPITSLALDL-TRIYSGSWDMTVRVWDRALLKC------LKVLR----HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGC  322 (536)
Q Consensus       254 ~~v~~l~~~~-~~l~s~s~dg~i~iwd~~~~~~------~~~~~----~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~  322 (536)
                      ..+..++|++ ..|++. .+|.+.-.+..+...      -..+.    +.-.-.-+.+++.+.++ +||.|+-++..+..
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~  118 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSD  118 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCST
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCC
Confidence            3667899943 235555 778877777654211      11121    11112233478888888 77998888764422


Q ss_pred             EE------EEEccccccceEEEEEeCCCCEEEEEcCCCcEE
Q 009373          323 LL------TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIH  357 (536)
Q Consensus       323 ~~------~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~  357 (536)
                      .-      ..+-..--..+..|.+.|+|.+.++.  |+.++
T Consensus       119 ~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          119 TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            11      11111122467999999999977776  77754

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=85.39  E-value=0.29  Score=35.29  Aligned_cols=62  Identities=15%  Similarity=0.372  Sum_probs=35.2

Q ss_pred             CCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhh
Q 009373           66 DLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVE  137 (536)
Q Consensus        66 ~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~  137 (536)
                      ..|.+++.-||...+|+.|..+..-|-.  -+-..+.||+.++.+.|+-.        .......|+..|..
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~--------~p~e~esWRelY~r   73 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEE--------RPEEYESWREMYLR   73 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCS--------CCCSSSCHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCccc--------CCCCCCCHHHHHHH
Confidence            4688888889998999999999988863  24478899999877888521        12456789999865

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=81.98  E-value=8.4  Score=37.40  Aligned_cols=54  Identities=13%  Similarity=0.042  Sum_probs=34.8

Q ss_pred             cceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc------CCCCCeEEEEEcC
Q 009373          333 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI------PHTGPVNSLAFEF  390 (536)
Q Consensus       333 ~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~------~h~~~v~~l~~~~  390 (536)
                      .....++|.|+|+++++-...+.|++++..++..    ..+..+.      ........|+|+|
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~P   86 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHP   86 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECC
Confidence            4567999999999777765445788887654421    1222221      1356778999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	536
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-17
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	1e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-08
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	1e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 6e-17
 Identities = 48/296 (16%), Positives = 108/296 (36%), Gaps = 39/296 (13%)

Query: 147 GRYSIDVLYGHTEAVLTVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRA 205
           GR+S+  ++  +E    V+ L    + + +   D+ +++W                ++  
Sbjct: 1   GRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 206 VAADKKLLVAGGTDGFIHCWRAVEVLPH------------------------------LF 235
           +  D+++++ G +D  +  W                                      ++
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 236 DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV 295
           D++       +  L  H   +  +  D   I S S D T++VW+ +  + ++ L      
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 180

Query: 296 YGLAPHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED 353
                +   +  +  SD  + +WD   G  L V+ G                 + +G  D
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAYD 237

Query: 354 GAIHMYEI---INDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 406
           G I ++++   ++    A  L + T + H+G V  L F+   +VS++ D  + + D
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 3e-10
 Identities = 47/295 (15%), Positives = 92/295 (31%), Gaps = 51/295 (17%)

Query: 203 IRAVAADKKLLVAGGTDGFIHCWRA-------------VEVLPHLFDISGSEKQNTQFRL 249
           +  +  D + +V+G  D  I  W                 VL   +D       ++   +
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTV 77

Query: 250 WEHEGPITSLALDLTRIYSGSWDM--------------TVRVWDRALLKCLKV----LRH 291
              +     +   L         +              ++ VWD A    + +    + H
Sbjct: 78  RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 137

Query: 292 SDWVYGLAPHDTTVASTSG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 350
              V  +   D  + S SG   + +W+T++   +  +NG   G        +    + +G
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC---LQYRDRLVVSG 194

Query: 351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 410
             D  I +++I           +     H   V  + F+   +VS A DGK+ + D+   
Sbjct: 195 SSDNTIRLWDIECGA------CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 465
           L    P                R L      +  +     +IV    +  + IW+
Sbjct: 249 LDPRAPAGTL----------CLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 25/219 (11%)

Query: 251 EHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS 309
           E    +  L  D  +I SG  D T+++WD+  L+C ++L  H+  V  L   +  +    
Sbjct: 13  ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII--- 69

Query: 310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369
                   T     +      +       A  H                  + +  +  +
Sbjct: 70  --TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 127

Query: 370 VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 429
           + L    + H   VN + F+  ++VSA+GD  + + +           + + V       
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS---------TCEFV------- 171

Query: 430 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468
              R L+G +  +  +      +V G  +  +R+W+   
Sbjct: 172 ---RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 207

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.8 bits (195), Expect = 6e-17
 Identities = 40/321 (12%), Positives = 89/321 (27%), Gaps = 38/321 (11%)

Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
            L GH   +  +     ++LL ++  D  + +W       + +       +   A     
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS- 108

Query: 213 LVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWD 272
                 +             +         + ++              LD  +I + S D
Sbjct: 109 -----GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD 163

Query: 273 MTVRVWDRALLKCLKVLRHSD----WVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVN 328
            T  +WD    +              +         V+    +   +WD   G       
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223

Query: 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF 388
           G H  +  ++     G+   TG +D    ++++  D          +       + S++F
Sbjct: 224 G-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY----SHDNIICGITSVSF 278

Query: 389 --EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD 446
                 L++   D   ++ D              R             L G +  +  + 
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDAL---------KADRAGV----------LAGHDNRVSCLG 319

Query: 447 IGAD--RIVCGGEEGIVRIWN 465
           +  D   +  G  +  ++IWN
Sbjct: 320 VTDDGMAVATGSWDSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 2e-16
 Identities = 49/313 (15%), Positives = 95/313 (30%), Gaps = 66/313 (21%)

Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
            L GH   V  V       ++ ++  D+ +++W  E G    + K    +++ ++ D   
Sbjct: 12  ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 213 LVAGGTDGFIHCWRAVEVLPHLFD-------------------------------ISGSE 241
            +       +                                             +   +
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 242 KQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL 298
                     H   +  +    D T I S S D TVRVW  A  +C   LR H   V  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 299 A---------------------PHDTTVASTSGSD--VYIWDTNSGCLLTVVNGAHVGNT 335
           +                             +   D  + +WD ++G  L  + G H    
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWV 250

Query: 336 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWL 393
           + +     G F+ +  +D  + +++  N         + T   H   V SL F    P++
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 394 VSAAGDGKLSLID 406
           V+ + D  + + +
Sbjct: 305 VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 31/268 (11%), Positives = 69/268 (25%), Gaps = 58/268 (21%)

Query: 252 HEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGL---------- 298
           H  P+T +      + + S S D T++VWD       + L+ H+D V  +          
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 75

Query: 299 ----------------------------------APHDTTVASTSGSDVYIWDTNSGCLL 324
                                              P+   + S S               
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 135

Query: 325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 384
                 H    + +  +  G  + +   D  + ++ +            A    H   V 
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVE 189

Query: 385 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML-----HGFE 439
            +++      S+  +   S             +  +  +  +        L     H   
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 440 CNLLSVDIGADRIVCGGEEGIVRIWNFS 467
              +    G   I+   ++  +R+W++ 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYK 277

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--A 208
           +  L GH   V  V   +  K + +   D  +R+W  ++   + +       + ++    
Sbjct: 240 LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299

Query: 209 DKKLLVAGGTDGFIHCW 225
               +V G  D  +  W
Sbjct: 300 TAPYVVTGSVDQTVKVW 316

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 4e-16
 Identities = 53/348 (15%), Positives = 112/348 (32%), Gaps = 52/348 (14%)

Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKL 212
           VL GH + V+T         + +   D+ +++W    G  + +       + +      +
Sbjct: 11  VLKGHDDHVITCLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

Query: 213 LVAGGTDGFIHCWRAVEVLPHLF---------------------------DISGSEKQNT 245
           +++G TD  +  W A                                    +   E    
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 246 QFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTV 305
              L  H   +  +  D  R+ SG++D  V+VWD     CL  L+           D   
Sbjct: 130 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 189

Query: 306 ASTSGSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN 363
             +   D  + +WD  +G  +  + G     +         + L +G  D  + +++I  
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS---GMELKDNILVSGNADSTVKIWDIKT 246

Query: 364 DCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 423
                 +  +     H   V  L F   ++++++ DG + L D++         +G+ + 
Sbjct: 247 GQ---CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK---------TGEFIR 294

Query: 424 RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEG----IVRIWNFS 467
            ++ +E       G     +           G   G     + + +F 
Sbjct: 295 NLVTLESGG---SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 7e-09
 Identities = 39/219 (17%), Positives = 71/219 (32%), Gaps = 29/219 (13%)

Query: 252 HEGPI-TSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTS 309
           H+  + T L     RI SGS D T++VW     KCL+ L  H+  V+     D  + S S
Sbjct: 15  HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369
                            ++  +   +           + +G  D  + +++I        
Sbjct: 75  TDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL-- 130

Query: 370 VLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVE 429
                  + H   V  + ++   +VS A D  + + D                      E
Sbjct: 131 ----HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET-------------------E 167

Query: 430 PPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468
                L G    + S+      +V G  +  +R+W+   
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 206

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (150), Expect = 4e-11
 Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 22/166 (13%)

Query: 173 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR---------AVAADKKLLVAGGTDGFIH 223
           +     D  VR+W  E GF +        +               D + +V+G  D  + 
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRA 281
            W  ++   +  D         +     H+  + S+A   +   I SGS D  V  WD+ 
Sbjct: 280 LWN-LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 282 LLKCLKVLR-HSDWVYGLA--------PHDTTVASTSG-SDVYIWD 317
               L +L+ H + V  +A        P     A+ SG     IW 
Sbjct: 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 36/177 (20%)

Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGLA--PHDTTVASTS---- 309
             I +GS D  VRVWD      ++ L         H D VY +       +V S S    
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277

Query: 310 --------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
                    ++     T +     V    H     S+A +   +++ +G +D  +  ++ 
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337

Query: 362 INDCTEANVLLVATWIPHTGPVNSLAF--------EFPWLVSAAGDGKLSLIDVRKL 410
                  +   +     H   V S+A         E+    + +GD K  +   +K+
Sbjct: 338 ------KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 2e-10
 Identities = 58/341 (17%), Positives = 113/341 (33%), Gaps = 41/341 (12%)

Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVA 215
            HT  V  V      + L T G +   +++ + DG  +A         +    +     +
Sbjct: 60  DHTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPE-NLNTSSS 117

Query: 216 GGTDGFIHCWR----------AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTR 265
             +D +I                E          + K     +  E +           +
Sbjct: 118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177

Query: 266 IYSGSWDMTVRVWDRALLKCLKVLRHSD---WVYGLAPHDTTVASTSG-SDVYIWDTNSG 321
           + SGS D TVR+WD    +C   L   D    V         +A+ S    V +WD+ +G
Sbjct: 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 237

Query: 322 CLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIN------DCTEAN 369
            L+  ++        H  +  S+  +  G  + +G  D ++ ++ + N        T  +
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297

Query: 370 VLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIE 427
                T+I H   V S+A      +++S + D  +   D +         SG  +  +  
Sbjct: 298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---------SGNPLLMLQG 348

Query: 428 VEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468
                  +     + L  +   +    G  +   RIW + +
Sbjct: 349 HRNSVISVAVANGSSLGPE--YNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 23/243 (9%), Positives = 61/243 (25%), Gaps = 34/243 (13%)

Query: 248 RLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------------- 290
           +  +H   +  +    D   + +G  + T +V+  +    +  L                
Sbjct: 57  KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS 115

Query: 291 ----HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF 346
                  ++  +          +G++  +          +V           +  +    
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 347 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLID 406
                  G+      I D       L  +       V     +  ++ + + D  + + D
Sbjct: 176 DKL--VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233

Query: 407 VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNF 466
                          +   ++ E      H      +        +V G  +  V++WN 
Sbjct: 234 SET----------GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283

Query: 467 SQA 469
             A
Sbjct: 284 QNA 286

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 1e-10
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 59  LHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWG---LP 115
             R  I+ LP  L   +L+ L+PK+L   +        LA D+  W+E   E      L 
Sbjct: 14  FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLH 73

Query: 116 IASAPLGAGFSDDKSWKELFVER 138
           I    +         WK  ++ +
Sbjct: 74  IKRRKVIKPGFIHSPWKSAYIRQ 96

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 37/227 (16%), Positives = 58/227 (25%), Gaps = 39/227 (17%)

Query: 252 HEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGS 311
           H+  I S++   +   S S D  ++VWD  LL            Y    H + +      
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDK---SYSHFVHKSGLHHVDVL 69

Query: 312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV- 370
                D    CL                       + T    G +  Y I  +     V 
Sbjct: 70  QAIERDAFELCL-----------------------VATTSFSGDLLFYRITREDETKKVI 106

Query: 371 ---LLVATWIPHTGPVNSLAF-------EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGK 420
              L +           +L +           LV+    G   +             +  
Sbjct: 107 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166

Query: 421 RVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNF 466
             S  +E++              SVDI     I  G   G V+I   
Sbjct: 167 W-SPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 1e-08
 Identities = 39/337 (11%), Positives = 86/337 (25%), Gaps = 46/337 (13%)

Query: 150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG------------FSIASSK 197
           + +    H   + +V          +   D  +++W  +              F   S  
Sbjct: 6   TANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63

Query: 198 PLGCTIRAVAA---DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEG 254
                ++A+     +  L+      G +  +R +        +   +       + +H  
Sbjct: 64  HHVDVLQAIERDAFELCLVATTSFSGDLLFYR-ITREDETKKVIFEKLDLLDSDMKKHSF 122

Query: 255 PITSLALD-----LTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTS 309
                          R+ +     T  +W                     P      S +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWK------------------FHPFADESNSLT 164

Query: 310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369
            +     +        +          S+  S  G  + TG  +G + + E+       N
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFA---TSVDISERG-LIATGFNNGTVQISELSTLRPLYN 220

Query: 370 VLLVATWIPHTGPVNSLAF-EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 428
                + I ++  + S+ F     L++ A D              G       V      
Sbjct: 221 FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 280

Query: 429 EPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 465
                  H      LS +   + +   G +G +R W+
Sbjct: 281 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 36/239 (15%)

Query: 141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG 200
            S T   + +++     ++   +V  ++   L+ T   +  V++  L     + + +   
Sbjct: 167 WSPTLELQGTVESPMTPSQFATSV-DISERGLIATGFNNGTVQISELSTLRPLYNFESQH 225

Query: 201 CTIRAVAA--------DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT---QFRL 249
             I    +           LL          C    E        S S   ++       
Sbjct: 226 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 285

Query: 250 WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA------P 300
           + H   + SL+       + S  WD  +R WD    + +  L  H D +           
Sbjct: 286 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 345

Query: 301 HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY 359
           H  ++A     DV                      +S   +   + L     D +I  +
Sbjct: 346 HGDSLAEPGVFDVKFLKKGW---------------RSGMGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 44/353 (12%), Positives = 106/353 (30%), Gaps = 58/353 (16%)

Query: 126 SDDKS---WKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLAS-AKLLFTSGYDSI 181
           S D     W    ++ E         +       H + +  +   A    L+ T+ +   
Sbjct: 31  SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD 90

Query: 182 VRMWHLEDG----------FSIASSKPLGCTIRAVA-------ADKKLLVAGGTDGFIHC 224
           +  + +               +  S     +  A+             LVA    G  + 
Sbjct: 91  LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150

Query: 225 WRAVEVLPHLFDISGS-----EKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVW 278
           W+          ++ +     E Q T           TS+ + +   I +G  + TV++ 
Sbjct: 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 210

Query: 279 DRALLKCL-------KVLRHSDWVYGLAPHDTTVASTSGSD------VYIWDTNSGCLLT 325
           + + L+ L        ++ +S+ +  +             D      + +++T  G  + 
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 326 VVNGAHVGNTKSL------------ARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLV 373
            ++     +  SL            + + +G+ L + G DG +  +++           +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV------KTKERI 324

Query: 374 ATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 426
            T   H   +                 +  + DV+ L +  R   G  ++  +
Sbjct: 325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESL 377

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 13/89 (14%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 379 HTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF 438
           H   + S++    + VS +GDG L + D +         + K  S    V          
Sbjct: 13  HDADIFSVSACNSFTVSCSGDGYLKVWDNK----LLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 439 ECNLLSVDIGADRIVCGGEEGIVRIWNFS 467
              +         +      G +  +  +
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRIT 97

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 9e-09
 Identities = 37/318 (11%), Positives = 86/318 (27%), Gaps = 29/318 (9%)

Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIAS-SKPLGCTIRAVAADKK 211
           V YGH +A+  +   A  K LF++  +  +  W +  G S           I  +    K
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 271
                          + +    +    GS   +++    +       LA+      + + 
Sbjct: 67  ---------GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117

Query: 272 DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH 331
                            + ++     L+     VA             SG  ++ V    
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV 177

Query: 332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP 391
                +              +     +   + +  E       T+        S + +  
Sbjct: 178 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 237

Query: 392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD- 450
            L + + D  + + ++ K                   + P  +      + ++  I  + 
Sbjct: 238 RLATGSLDNSVIVWNMNK-----------------PSDHPIIIKGAHAMSSVNSVIWLNE 280

Query: 451 -RIVCGGEEGIVRIWNFS 467
             IV  G++  ++ WN  
Sbjct: 281 TTIVSAGQDSNIKFWNVP 298

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 45/295 (15%), Positives = 93/295 (31%), Gaps = 51/295 (17%)

Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCT-----IRAVA--A 208
            H E V  V +    + ++T G    V++W +    + +    L C      IR+     
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 209 DKKLLVAGGTDGFIHCWRAVEVLPHLFD-------------------------------- 236
           D   L+ GG    +  W      P +                                  
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 237 -ISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWV 295
               ++    QF+          ++ D T++++G  D TVR WD    + L+    +  +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 296 YGLAPHDT-TVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG 354
           + L    T    +       +   +           H     SL  ++ G +  + G+D 
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF--EFPWLVSAAGDGKLSLIDV 407
            ++ +           +        +  V S     +  ++V+ +GD K ++ +V
Sbjct: 288 LLNAW----RTPYGASIFQ---SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 9/120 (7%)

Query: 255 PITSLALDL---TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS 309
           P  S  +      +      D  +        + +  L H + V  +        V +  
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG 70

Query: 310 GSDVYIWDTNSGC----LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 365
              V +WD +       +  +         +S      G  L  GGE   + ++++    
Sbjct: 71  KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 1/126 (0%)

Query: 101 HHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEA 160
                    +       S     G+     W  + +E        + +     L+ H   
Sbjct: 208 RSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC 267

Query: 161 VLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR-AVAADKKLLVAGGTD 219
           VL++      K   ++G D+++  W    G SI  SK     +   ++ D K +V G  D
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

Query: 220 GFIHCW 225
                +
Sbjct: 328 KKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 32/273 (11%), Positives = 65/273 (23%), Gaps = 32/273 (11%)

Query: 226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD---- 279
           + V   P      G  +   Q     H   + ++ +      +Y+G     V+VWD    
Sbjct: 24  QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP 82

Query: 280 --RALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNT 335
             ++ +  L  L   +++      P   T+     +        +     +         
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142

Query: 336 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVS 395
              A + + D           ++                     +    S      W   
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 396 AAGDGK---------------------LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRM 434
                +                     L      + L  G  +S   V  V + +  Q  
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

Query: 435 LHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS 467
           LH      L         V  G++ ++  W   
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 4e-08
 Identities = 41/316 (12%), Positives = 75/316 (23%), Gaps = 12/316 (3%)

Query: 153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKK 211
            L GH  +V+T         + T   D ++R++   +   +         + A+  A   
Sbjct: 7   TLRGHMTSVITCLQF-EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSW 271
           +LV+G TD  +  W   +          +        +                I +GS 
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI---------KYIVTGSR 116

Query: 272 DMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAH 331
           D T+ VW       +           +           G       +             
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176

Query: 332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFP 391
                +L               G            E    + A+        +    E  
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236

Query: 392 WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADR 451
           + +         L    K L S       R     +        H     + +  +  D 
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS-DN 295

Query: 452 IVCGGEEGIVRIWNFS 467
           I+  G E    I+N  
Sbjct: 296 ILVSGSENQFNIYNLR 311

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 18/244 (7%)

Query: 176 SGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLF 235
              D+ + +W L    S+                ++     G                  
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173

Query: 236 DISGSEKQNTQFRLWEHEGPITSLALDLTR------------IYSGSWDMTVRVWDRALL 283
            +SGS               +  L+    R              S S D T+R+WD    
Sbjct: 174 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN- 232

Query: 284 KCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT 343
             L                +     S +             +     H  N  ++   + 
Sbjct: 233 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292

Query: 344 GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLS 403
            D +   G +   ++Y +      +  L+ A  +     + S+ F+   LV+A      S
Sbjct: 293 SDNILVSGSENQFNIYNL-----RSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQS 347

Query: 404 LIDV 407
            +++
Sbjct: 348 FLEI 351

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 5e-08
 Identities = 32/316 (10%), Positives = 64/316 (20%), Gaps = 43/316 (13%)

Query: 171 KLLFTSGYDSIVRMWHLEDGFSIASSKPLG---CTIRAVA----ADKKLLVAGGTDGFIH 223
            + +  G  + VR     D       +  G     +  V        + L +G   G + 
Sbjct: 31  AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI 90

Query: 224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD----LTRIYSGSWDMTVRVWD 279
            W           +  + K   Q       GPI+ ++ D       +     D       
Sbjct: 91  VWG-WTFDKESNSVEVNVKSEFQ----VLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 145

Query: 280 RALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNG-------AHV 332
                 L  +              +    S +                            
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205

Query: 333 GNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 392
              + +  S                             +         G       +   
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265

Query: 393 LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDI---GA 449
             +   D  + + DV          + K V +          L   +     V +   G 
Sbjct: 266 FATVGADATIRVWDVT---------TSKCVQKWT--------LDKQQLGNQQVGVVATGN 308

Query: 450 DRIVCGGEEGIVRIWN 465
            RI+    +G +  + 
Sbjct: 309 GRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 4e-05
 Identities = 32/276 (11%), Positives = 66/276 (23%), Gaps = 22/276 (7%)

Query: 150 SIDVLYGHTEAVLTVFVLA---SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV 206
            +    GH  +V+T    +    ++ L +      V +W         S +    +   V
Sbjct: 54  PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 113

Query: 207 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRI 266
            A     ++   +G   C            IS     +        +            +
Sbjct: 114 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 173

Query: 267 YSGSWDMTVRVWDRALLKCLKVL------RHSDWVYGLAPHDT------TVASTSGSDVY 314
            S +      V                  +   +V  +           TV S      +
Sbjct: 174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCF 233

Query: 315 IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVA 374
              +         +   V                T G D  I ++    D T +  +   
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW----DVTTSKCVQKW 289

Query: 375 TWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDV 407
           T          +         ++S + DG L+  ++
Sbjct: 290 TLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 8/88 (9%)

Query: 59  LHRSTITDLPPALISE----ILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGL 114
           L R  IT LP   +      IL+ LD K L     V    +R+ SD   WK+        
Sbjct: 6   LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVR- 64

Query: 115 PIASAPLGAGFSDDKSWKELFVEREFRS 142
              +  L  G ++ + W +   + +   
Sbjct: 65  ---TDSLWRGLAERRGWGQYLFKNKPPD 89

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 281 ALLKCL-KVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLA 339
           AL   L +  R +  V G  P    +   +G+ VY     S     +    H   T    
Sbjct: 7   ALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTE-HSHQTTVAK 65

Query: 340 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPW 392
            S +G +  +G   G + +++              T    +GPV  ++++   
Sbjct: 66  TSPSGYYCASGDVHGNVRIWDTTQTTHILK----TTIPVFSGPVKDISWDSES 114

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 262 DLTRIYSGSWDMTVRVWDRALLKCLKVL----RHSDWVYGLAPHDTTVASTSGS-DVYIW 316
           D T+I S S D T+++W+ A LK  K +    R  D   G+      + S S +  +   
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

Query: 317 D 317
           +
Sbjct: 309 N 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 26/262 (9%), Positives = 66/262 (25%), Gaps = 9/262 (3%)

Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
            ++   H+          S     +      VR+W       I  +     +        
Sbjct: 51  TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110

Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
                          R   V       S          +   +   +     ++     +
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNT 170

Query: 271 WDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSG------CLL 324
             +      +      +  +    V          ++     + +++   G         
Sbjct: 171 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 230

Query: 325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN 384
           ++ N AH G+   L  S  G  + +   D  I ++  +        + V T         
Sbjct: 231 SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN-VATLKVEKTIPVGT--RIEDQQL 287

Query: 385 SLAFEFPWLVSAAGDGKLSLID 406
            + +    LVS + +G ++ ++
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 5/97 (5%)

Query: 266 IYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSG-SDVYIWDTNSGCLL 324
              G+            +     +    W     P  T +AS S    + IW+  +  + 
Sbjct: 218 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWS----PDGTKIASASADKTIKIWNVATLKVE 273

Query: 325 TVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI 361
             +        + L    T   L +   +G I+    
Sbjct: 274 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 22/295 (7%), Positives = 63/295 (21%), Gaps = 18/295 (6%)

Query: 173 LFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEV 230
                  + V    +                             +G   G +  W   + 
Sbjct: 31  KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 90

Query: 231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR 290
              L           +   W+ E    +   +    +   +       +  L    + + 
Sbjct: 91  THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN 150

Query: 291 HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTG 350
             D+         + +  +   ++             +   V + +              
Sbjct: 151 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 210

Query: 351 GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL 410
           G     +  +        +  L       +    + + +   + SA+ D  + + +V   
Sbjct: 211 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-- 268

Query: 411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN 465
                  + K    +        +    E   L +      +V     G +   N
Sbjct: 269 -------TLKVEKTI-------PVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 24/292 (8%), Positives = 57/292 (19%), Gaps = 35/292 (11%)

Query: 163 TVFVLASAKLLFTSG-YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGF 221
            +   ++       G     V ++        A  +        V     +         
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 222 IHCWRAVEVLPHLFDISGSEKQNTQFR-----LWEHEGPITSLAL--DLTRIYSGS-WDM 273
           +  ++              +                  P T      D +        + 
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

Query: 274 TVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVG 333
           T  +    +         +   Y          + +G    I  ++          A   
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 239

Query: 334 NTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA--------NVLLVATW-----IPHT 380
             ++      G                +                VL   T          
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299

Query: 381 GPVNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEV 428
             ++S+      +      + GD  L + D           SG+ +  V ++
Sbjct: 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAE---------SGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.002
 Identities = 16/175 (9%), Positives = 38/175 (21%), Gaps = 32/175 (18%)

Query: 253 EGPITSLAL--DLTRIY-----SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDT 303
           + P    A   D  R+Y       +      V D    + + ++    ++         +
Sbjct: 1   DEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGGFLPNPVVADDGS 59

Query: 304 TVASTSGSD-----------VYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDF 346
            +A  S              V ++D  +      +                 + +  G  
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 347 LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGK 401
           L       A  +  +  +            +      +              DG 
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKA-----FKRMLDVPDCYHIFPTAPDTFFMHCRDGS 169

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 8e-07
 Identities = 33/286 (11%), Positives = 74/286 (25%), Gaps = 27/286 (9%)

Query: 202 TIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSL 259
            I  +     K LL+    DG +  +                K     +   ++ P+   
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVY----------KFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 260 AL---DLTRIYSGSWDMTVRVWDRA-----LLKCLKVLRHSDWVYGLAPHDTTVASTSGS 311
                   +IY G+    +   D                           D  +A++   
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122

Query: 312 DVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT-----GDFLFTGGEDGAIHMYEIINDCT 366
            + + D  +     +       N   +             L  G  +  +  + +     
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

Query: 367 EANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 426
           +   +  +        V  L  E      ++ DG++++       +     S KR +   
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD--QGDDYNSSKRFAFRC 240

Query: 427 EVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEI 472
                +     +  N +        +   G +GI+  WN     +I
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 4e-06
 Identities = 17/147 (11%), Positives = 40/147 (27%), Gaps = 12/147 (8%)

Query: 178 YDSIVRMWHLEDGFSIASSKPLG------CTIRAVAADKKLLVAGGTDGFIHCW--RAVE 229
            +S V+ + L        +            +  +  +++       DG +         
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLK 287
              +              +      P+ S+        +Y+   D  +  W+    K +K
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 288 VLR--HSDWVYGLAPHDTTVASTSGSD 312
                + D V  +A  D  +   +  D
Sbjct: 288 NFAKFNEDSVVKIACSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 252 HEGPITSLAL--DLTRIYSGSWDMTVRVWD----RALLKCLKVLRHSDWVYGLA--PHDT 303
            +  I+ + +    + +   SWD ++ V+        +  L+ LR+   +       +  
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 304 TVASTSGSDVYIW 316
                      I 
Sbjct: 70  LQIYVGTVQGEIL 82

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 3e-05
 Identities = 28/285 (9%), Positives = 70/285 (24%), Gaps = 22/285 (7%)

Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPL---GCTIRAVA 207
           + +     + +  + ++ S  LL  + +D  + ++  +                 +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 208 ---ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLT 264
                   +  G   G I     +         +              +  + + + D  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 265 RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLL 324
                  +    V     L        +            +   + S V  +        
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 325 TV---VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP--- 378
                 +G               +       DG + +    +   + N      +     
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 379 ------HTGPVNSLAF--EFPWLVSAAGDGKLSLIDV--RKLLRS 413
                    PVNS+ F     +L +A  DG +S  ++  RK +++
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 17/164 (10%), Positives = 36/164 (21%), Gaps = 31/164 (18%)

Query: 266 IYSGSWDMTVRVWDRALLKC--------LKVLRHSDWVYGLAPHDTTVASTSGSDVYIWD 317
           +Y  S+       DR +L            +               ++ S +G       
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252

Query: 318 TNSGCLLTVVNG---------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA 368
                 + V  G         + +             +     E G +  Y+        
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD-------- 304

Query: 369 NVLLVATWIPHTGPVNSLAFEFP---WLVSAAGDGKLSLIDVRK 409
             +           +  L         ++    DGK+    + K
Sbjct: 305 --VKTRKVTEVKNNLTDLRLS-ADRKTVMVRKDDGKIYTFPLEK 345

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 36/327 (11%), Positives = 71/327 (21%), Gaps = 39/327 (11%)

Query: 156 GHTEAVLTVFVLASAKLLFTSGYDS--IVRMWHLEDGFSIASSKPLGCTIRAVAADKKLL 213
                +  V      K+ F  G      + ++    G +    + LG             
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 214 VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM 273
                D F      +E           E   T F + ++   I            G    
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 274 TVRVWDRALLKCLKVLRH--SDWVYGLAPHDTTVASTSGSD-VYIWDTNSGCLLTVVNG- 329
            + V+D    K          D+          +   S        D         V   
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219

Query: 330 -----AHVGNTKSLARSHTGDFLFTGGEDGA-IHMYEIINDCTEANVLLVATWIPHTGPV 383
                   G+               G  D   ++      +    +  ++          
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279

Query: 384 NSLAF--EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECN 441
           +         +   A   G L   DV+                        R +   + N
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKT-----------------------RKVTEVKNN 316

Query: 442 LLSVDIGAD--RIVCGGEEGIVRIWNF 466
           L  + + AD   ++   ++G +  +  
Sbjct: 317 LTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 59  LHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDH-HAWKEFYC-ERWGLPI 116
           L R  IT LP  +  +I N L  +++     VS   +++       WK+    E +  P 
Sbjct: 1   LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPK 60

Query: 117 ASAPLGAG-------FSDDKSWKELFVER 138
               L           S     +  F+E 
Sbjct: 61  GFNSLNLKLSQKYPKLSQQDRLRLSFLEN 89

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 221 FIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWD- 279
            I  +            +    +         E       ++   + +GS D  + ++  
Sbjct: 185 KILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244

Query: 280 RALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSD--VYIWD 317
           +  +K +K L  H D V  L     +   +SG+D  +  W+
Sbjct: 245 KRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 32/290 (11%), Positives = 64/290 (22%), Gaps = 42/290 (14%)

Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--------SIASSK----- 197
           +  + GH + +  +    +   L +  YD  +  W              S+ +SK     
Sbjct: 6   LKTISGHNKGITAL----TVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS 61

Query: 198 -------------------PLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS 238
                                     A       ++    D  I      +++  +   S
Sbjct: 62  SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 121

Query: 239 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGL 298
                +             +                                 +    G 
Sbjct: 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 181

Query: 299 APHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM 358
                 +      +V                       +       D + TG  D  I +
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241

Query: 359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEFP-WLVSAAGDGKLSLIDV 407
           Y +          ++     H   VN+L +E P  LVS+  D  +   +V
Sbjct: 242 YSVKRPMK-----IIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 28/225 (12%), Positives = 65/225 (28%), Gaps = 12/225 (5%)

Query: 255 PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PHDTTVAS 307
           PI+  A   D T+I     +  V +++++  K ++V     H+  V G+   P    + +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 308 TSG-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM---YEIIN 363
                + Y+W          +    +       R    +  F  G    +     +E  N
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 364 DCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 423
           D      +                       S     ++    ++++     PT      
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 424 RVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQ 468
              E+        G+  + +       R+     +  V + +  +
Sbjct: 189 PFGELMFESSSSCGW-VHGVCFSANGSRVAWVSHDSTVCLADADK 232

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 10/81 (12%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 291 HSDWVYGLA--PHDTTVASTSGS-DVYIWDTNSG-CLLTVVNGAHVGNTKSLARSHTGDF 346
             + +   A     T +A    + +V+I++ +    +       H G    +  +   + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 347 LFTGGEDGAIHMYEIINDCTE 367
           + T G D   +++ +     +
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWK 86

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 39/329 (11%), Positives = 82/329 (24%), Gaps = 25/329 (7%)

Query: 151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADK 210
           +  L  H   V  V     +  + T G D    +W L+      +   L     A     
Sbjct: 44  VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103

Query: 211 KLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGS 270
                    G      ++    +    +         +             +   + +GS
Sbjct: 104 APNEKKFAVGSGSRVISI---CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

Query: 271 WDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGA 330
            D   R++   + +  +    + W   +   +    S+S          S     V   +
Sbjct: 161 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220

Query: 331 HVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT-----EANVLLVATWIPHTGPVNS 385
           H                    E   +     I + +          ++ T+    G ++ 
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF 280

Query: 386 LA-FEFPWLVSAAGDGKLSLID--VRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNL 442
               + P   S  G           +K    G   +G  +  +          H    + 
Sbjct: 281 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL----------HKNSVSQ 330

Query: 443 LSV----DIGADRIVCGGEEGIVRIWNFS 467
           +SV         +    G +G + IW+  
Sbjct: 331 ISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 66  DLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAW 104
            LP  L+  I +CL   EL  VS V    +RLASD   W
Sbjct: 3   SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 19/152 (12%), Positives = 36/152 (23%), Gaps = 20/152 (13%)

Query: 274 TVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTSGSD-VYIWDTNSGCLLTV---- 326
            + + D +  +   VL     V+          +        V + D       TV    
Sbjct: 43  QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 102

Query: 327 VNGAHVGNTKSLARSHTGDFLFTGGE--------DGAIHMYEIINDCTEANVLLVATWIP 378
           +         S        +   G          DG     + I                
Sbjct: 103 IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE--YH 160

Query: 379 HTGPVNSLAFEFP---WLVSAAGDGKLSLIDV 407
               V ++        ++V+    GK+ L+D 
Sbjct: 161 PEPRVAAILASHYRPEFIVNVKETGKILLVDY 192

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 10/163 (6%), Positives = 24/163 (14%), Gaps = 28/163 (17%)

Query: 264 TRIYSGSWDMTVRVWDRALLKCLKVL----------RHSDWVYGLAPHDTTVASTSGSD- 312
            R   G     V V+D      +  +               + G       +        
Sbjct: 87  ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS 146

Query: 313 -VYIWDTNSGCLLTVVNG------AHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC 365
                         +                    S       +           +    
Sbjct: 147 AAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV---- 202

Query: 366 TEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVR 408
                              +    +P ++  A    +   D+ 
Sbjct: 203 ------GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP 239

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 24/302 (7%), Positives = 52/302 (17%), Gaps = 56/302 (18%)

Query: 156 GHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG----------FSIASSKPLGCTIRA 205
           G   A+ +                  V ++                   S  P    I  
Sbjct: 76  GSDFALASTS----FARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131

Query: 206 VAADKKLLVAGGTDGFIHCWRAV--EVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-- 261
            A+   LL                          S                  T      
Sbjct: 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--------HIHPGAAATHYLGSC 183

Query: 262 DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPH-DTTVASTSGSDVYIWDTNS 320
             +   S                       +        +    +     S +   D  +
Sbjct: 184 PASLAASDLAAAPAAAGIVGAQC---TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240

Query: 321 GCLLTVVN-----------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN 369
                                     + +A+    D +     + +        + +   
Sbjct: 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300

Query: 370 V--LLVATWIPHTGPVNSLAF----EFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVS 423
                 +  I +    +++            ++AG   L + D           S +  S
Sbjct: 301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA---------SDQDQS 351

Query: 424 RV 425
            V
Sbjct: 352 SV 353

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 33/283 (11%), Positives = 67/283 (23%), Gaps = 14/283 (4%)

Query: 258 SLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSDWVYGLAPH-DTT---VASTSGS 311
           +L      +   ++   + V D A     K                 D     V +    
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 312 DVYIWDTNSGCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCT 366
           D+Y  D ++       N     G    +  S A S  G  ++             +    
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 367 EANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI 426
              V   A  +              +L+ AA DG L +             +GK    + 
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI--YKMDVKTGKYTVALP 180

Query: 427 EVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLEN 486
                ++     +                    I R  +  Q             + L+ 
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRH-EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239

Query: 487 RMRRRKLQTEMSSKGGRTDQCSVAAKKNPMNGNRRSVWHNKRG 529
                +   +++       +      +     NR + +  K+ 
Sbjct: 240 GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR 282

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 13/139 (9%), Positives = 34/139 (24%), Gaps = 14/139 (10%)

Query: 157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG 216
            +            +   T+          L+ G +          +             
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL------RS 260

Query: 217 GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMT 274
             D          +    +D+    KQ    +    +     +A      ++Y G     
Sbjct: 261 PKDPNQIYGVLNRL--AKYDL----KQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314

Query: 275 VRVWDRALLKCLKVLRHSD 293
           + V++   L+ +K ++   
Sbjct: 315 LAVFNPDTLEKVKNIKLPG 333

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 14/148 (9%), Positives = 35/148 (23%), Gaps = 17/148 (11%)

Query: 148 RYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA-SSKPLGCTIRAV 206
                       A               + Y + +    LE G       + +     + 
Sbjct: 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST 246

Query: 207 AADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT 264
           A +     A G    +  +                ++N   +         S+ +  D +
Sbjct: 247 AVNPAKTRAFGAYNVLESFDL--------------EKNASIKRVPLPHSYYSVNVSTDGS 292

Query: 265 RIYSGSWDMTVRVWDRALLKCLKVLRHS 292
            ++ G     +  +D   L+    +   
Sbjct: 293 TVWLGGALGDLAAYDAETLEKKGQVDLP 320

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 16/139 (11%)

Query: 266 IYSGSWDMTVRVWD---RALLKCLKVLRHSDWVYGLA--PHDTT--VASTSGSDVYIWDT 318
           I + +    + V D    A+ K + +             P              +   D 
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 319 NSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGGEDGAIHMYEI-----INDCTEAN 369
            +G  L  ++ +     V +    A S  G  L        + +             +A 
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 370 VLLVATWIPHTGPVNSLAF 388
            L           +  LA+
Sbjct: 124 TLSRRKAFEAPRQITMLAW 142

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 268 SGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTT--VASTSGSDVYIWDTNSGCL 323
           + S    + V D    K    +       G    P  T   VA+   +DV I DT +  +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 5/86 (5%)

Query: 305 VASTSGSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEII 362
           +AS     +++W+ N    LT+       G  + +  S    +L+ G   +  +  Y I 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI- 66

Query: 363 NDCTEANVLLVATWIPHTGPVNSLAF 388
               +   L  A      G +  ++ 
Sbjct: 67  --APDDGALTFAAESALPGSLTHIST 90

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 12/134 (8%)

Query: 268 SGSWDMTVRVWDRAL---LKCLKVLRHSDWVYGLA--PHDTTVASTSGSD----VYIWDT 318
           +      + VW+      L   +V+     V  +   P    +      +     Y    
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 319 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIP 378
           + G L      A  G+   ++  H G F+F G  +        +    +   + V   + 
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN---AGNVSVTRLEDGLPVGVVDVVE 125

Query: 379 HTGPVNSLAFEFPW 392
                +S       
Sbjct: 126 GLDGCHSANISPDN 139

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 22/133 (16%)

Query: 270 SWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVASTSGSD-VYIWDTNSGCLLTVVN 328
           SW + V+  DR              +  L   +    +   +  + + D +S  ++ V++
Sbjct: 10  SWKVLVKPEDRP----------KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID 59

Query: 329 GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF 388
             +         S +G +L   G D  I M     D        VA         +    
Sbjct: 60  TGY--AVHISRMSASGRYLLVIGRDARIDMI----DLWAKEPTKVAEIKIGIEARS---- 109

Query: 389 EFPWLVSAAGDGK 401
                     + +
Sbjct: 110 -VESSKFKGYEDR 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	536
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.98
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.79
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.66
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.59
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.58
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.56
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.55
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.47
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.39
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.27
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.1
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.98
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.78
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.66
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.66
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.53
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.49
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.47
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.46
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.4
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.26
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.01
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.89
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.79
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.68
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.59
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.47
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.33
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.31
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.2
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.05
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.95
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.69
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.67
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.63
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.59
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.28
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.26
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.16
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.14
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.91
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.64
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	94.58
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.38
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.36
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.26
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.09
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.84
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.05
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	85.26
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.06
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	82.18
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.49

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-38  Score=295.40  Aligned_cols=277  Identities=22%  Similarity=0.377  Sum_probs=246.0

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ...+|+||+++|++|+|+|++++|+||+.||+|+|||+.+++.+.++.+|...|.++.  +++..+++++.++.+.+|+.
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            3568999999999999999999999999999999999999999999999999887766  88999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD  302 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~  302 (536)
                      ...             .....+.+|...+.++.+  +++.+++++.|+.+++||+++++....+. |...+.++.  +++
T Consensus        89 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (317)
T d1vyhc1          89 QGF-------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG  155 (317)
T ss_dssp             TSS-------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             ccc-------------ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCC
Confidence            654             245556788999999999  77899999999999999999999988887 778888776  788


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC--------------------CCEEEEEcCCCcEEEEEc
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT--------------------GDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~--------------------~~~l~tg~~dg~i~iwd~  361 (536)
                      .++++++ |+.|++|++.+++....+. +|...+.++.++|+                    +.++++|+.||.|++||+
T Consensus       156 ~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  234 (317)
T d1vyhc1         156 TLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV  234 (317)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEET
T ss_pred             CEEEEEeCCCeEEEEeeccceeeEEEe-cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEEC
Confidence            9999888 8999999999999998886 68889999998875                    357899999999999999


Q ss_pred             ccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373          362 INDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  439 (536)
Q Consensus       362 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (536)
                      +++      .++.++.+|...|.+++|+|  .+|++|+.||.|++||++++                   .....+.+|.
T Consensus       235 ~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------------~~~~~~~~h~  289 (317)
T d1vyhc1         235 STG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-------------------RCMKTLNAHE  289 (317)
T ss_dssp             TTT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-------------------CCCEEEECCS
T ss_pred             CCC------cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCC-------------------cEEEEEcCCC
Confidence            988      67888899999999999986  69999999999999999873                   3445677888


Q ss_pred             ccEEEEEecCC--EEEEecCCCeEEEEe
Q 009373          440 CNLLSVDIGAD--RIVCGGEEGIVRIWN  465 (536)
Q Consensus       440 ~~v~~~~~~~~--~l~sg~~Dg~i~vW~  465 (536)
                      ..|.+++++++  +|+||+.||+|+|||
T Consensus       290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            88988887654  999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=295.44  Aligned_cols=274  Identities=21%  Similarity=0.286  Sum_probs=229.7

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce-----eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS-----IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIH  223 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~-----~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~  223 (536)
                      ++++ +|...|+|++|+|+|++|+||+ ||.|+|||+.++..     ......|...|.+++  |++++|++|+.||+|+
T Consensus        45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~  122 (337)
T d1gxra_          45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence            4555 8999999999999999999998 89999999976533     223457777776654  8999999999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe-
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA-  299 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~-  299 (536)
                      +||+....           ......+..|...|.++++  ++..+++++.|+.|++||+.++++..... |...|.+++ 
T Consensus       123 iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         123 IWDLAAPT-----------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             EEECCCC-------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99986542           2345567789999999999  66799999999999999999998887776 888899887 


Q ss_pred             -ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeecc
Q 009373          300 -PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWI  377 (536)
Q Consensus       300 -~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~  377 (536)
                       +++..+++++ ++.+++||+++++.+..+.  |...|.+++|+|++++|++|+.||.+++||++...      . ....
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~------~-~~~~  262 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------K-YQLH  262 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------E-EEEC
T ss_pred             cccccccccccccccccccccccceeecccc--cccceEEEEEcccccccceeccccccccccccccc------c-cccc
Confidence             7788888888 8999999999999988874  88999999999999999999999999999998872      2 3456


Q ss_pred             CCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEE
Q 009373          378 PHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIV  453 (536)
Q Consensus       378 ~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~  453 (536)
                      .|...|++++|+|  ++|++++.||.|++||+.++....                    ..+|...|.++++++  ++|+
T Consensus       263 ~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~--------------------~~~~~~~v~~~~~s~d~~~l~  322 (337)
T d1gxra_         263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--------------------QSKESSSVLSCDISVDDKYIV  322 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------------EEECSSCEEEEEECTTSCEEE
T ss_pred             ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE--------------------EccCCCCEEEEEEeCCCCEEE
Confidence            8999999999986  699999999999999998743221                    123556677777654  5999


Q ss_pred             EecCCCeEEEEeC
Q 009373          454 CGGEEGIVRIWNF  466 (536)
Q Consensus       454 sg~~Dg~i~vW~~  466 (536)
                      +|+.||+|+|||+
T Consensus       323 t~s~D~~I~vWdl  335 (337)
T d1gxra_         323 TGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTSCEEEEEE
T ss_pred             EEeCCCeEEEEEE
Confidence            9999999999996

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-36  Score=288.77  Aligned_cols=283  Identities=17%  Similarity=0.279  Sum_probs=238.8

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~  227 (536)
                      ..++|+||+++|++|+|+|++++||||+.||+|+|||+.+++.+..+..|...|.++.  |++.++++|+.|+.+.+|+.
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            3578999999999999999999999999999999999999999999999988887765  89999999999999999998


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT  303 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~  303 (536)
                      ....         ........+.+|......... .+..+.....|.....++........... +...+....  +.+.
T Consensus       127 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (340)
T d1tbga_         127 KTRE---------GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR  197 (340)
T ss_dssp             SSSC---------SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred             cccc---------cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence            6543         123345567788887777766 77888999999999999988777666555 555565555  6777


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      +++++. |+.|++||+++++.+..+. +|...|++++|+|++++|++|+.||.|++||++....    ........|...
T Consensus       198 ~~~~~~~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~----~~~~~~~~~~~~  272 (340)
T d1tbga_         198 LFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE----LMTYSHDNIICG  272 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE----EEEECCTTCCSC
T ss_pred             eeEEeecCceEEEEECCCCcEEEEEe-CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccc----ccccccccccCc
Confidence            888877 8999999999999999986 6999999999999999999999999999999988732    122334567788


Q ss_pred             eEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCC
Q 009373          383 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEE  458 (536)
Q Consensus       383 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~D  458 (536)
                      |++++|++  .+|++|+.||.|++||+.++                   .....+.+|...|.+++++++  +|+|||.|
T Consensus       273 i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-------------------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~D  333 (340)
T d1tbga_         273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKA-------------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD  333 (340)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             eEEEEECCCCCEEEEEECCCEEEEEECCCC-------------------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence            99999986  69999999999999999873                   334456788889988887665  99999999


Q ss_pred             CeEEEEe
Q 009373          459 GIVRIWN  465 (536)
Q Consensus       459 g~i~vW~  465 (536)
                      |.|+|||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-37  Score=298.63  Aligned_cols=283  Identities=25%  Similarity=0.363  Sum_probs=230.8

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC------------------CCceEEE--EecCCC
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP------------------LGCTIRA--VAADKK  211 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~------------------~~~~v~~--~~~~~~  211 (536)
                      ....+|++.|+||+|+|+|++||+|+ |++|+|||+.+++.+..+..                  |...|.+  ++|+++
T Consensus        56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~  134 (388)
T d1erja_          56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  134 (388)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence            34447999999999999999999987 89999999999988776643                  3444554  458999


Q ss_pred             EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee
Q 009373          212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL  289 (536)
Q Consensus       212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~  289 (536)
                      +|++|+.||.|++||...+.             ......+|...|.++.+  ++..+++++.++.+++||..+.......
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRK-------------IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             cceecccccccccccccccc-------------cccccccccccccccccccccccccccccceeeeeeecccccccccc
Confidence            99999999999999987653             56667889999999999  6678999999999999999999888877


Q ss_pred             eccccEEEEe---ecCCEEEEec-CCcEEEEeCCCCcEEEEEc------cccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          290 RHSDWVYGLA---PHDTTVASTS-GSDVYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       290 ~~~~~v~~~~---~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      .+.....++.   +++.++++++ |+.|++||..++.....+.      .+|...|++++|+|++++|++|+.||.|++|
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iw  281 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  281 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEE
Confidence            7555555544   5788898887 8999999999998777653      2578899999999999999999999999999


Q ss_pred             EcccCcccc------ccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCC
Q 009373          360 EIINDCTEA------NVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPP  431 (536)
Q Consensus       360 d~~~~~~~~------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  431 (536)
                      |+++.....      ..........|...|.+++|++  .+|++|+.||.|++||++++                   .+
T Consensus       282 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-------------------~~  342 (388)
T d1erja_         282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------------NP  342 (388)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------------CE
T ss_pred             eccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC-------------------cE
Confidence            998764321      1233455668999999999976  79999999999999999874                   33


Q ss_pred             eeeeccccccEEEEEe--------cCCEEEEecCCCeEEEEeCC
Q 009373          432 QRMLHGFECNLLSVDI--------GADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       432 ~~~~~~~~~~v~~~~~--------~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      ...+.+|...|.++.+        ++.+|||||.||+|+||+++
T Consensus       343 ~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            4557788888888864        34589999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-37  Score=292.02  Aligned_cols=319  Identities=19%  Similarity=0.285  Sum_probs=257.9

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEccc
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      +.++|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.++...+++|++|+.|+.+++|+...
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~~~~~~~~~   86 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET   86 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccccccccccc
Confidence            56789999999865 36678999999999999999999999999999999999999998888999999999999999865


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEe
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVAST  308 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~  308 (536)
                      ..             .......+...+......+..+..+..|+.+.+|+..+++....+. ..............++.+
T Consensus        87 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d2ovrb2          87 GE-------------CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  153 (342)
T ss_dssp             TE-------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             cc-------------ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence            42             3344455666777777788999999999999999999998887776 333334444555555555


Q ss_pred             c-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEE
Q 009373          309 S-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLA  387 (536)
Q Consensus       309 ~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~  387 (536)
                      + ++.+++||....+.+..+. +|...+..+  .+++.++++|+.||.|++||++..      ..+..+.+|...|.+++
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~~~------~~~~~~~~~~~~v~~~~  224 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQ-GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGME  224 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEEC-CCSSCEEEE--EECSSEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEE
T ss_pred             cCCCeEEEeecccceeeEEEc-Ccccccccc--cCCCCEEEEEeCCCeEEEeecccc------eeeeEecccccceeEEe
Confidence            5 9999999999999888885 576666555  457889999999999999999888      67888899999999999


Q ss_pred             EcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373          388 FEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       388 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      +++++|++++.||.|++||+........                ......|...+.++.++++++++|+.||+|++||+.
T Consensus       225 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         225 LKDNILVSGNADSTVKIWDIKTGQCLQT----------------LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             EETTEEEEEETTSCEEEEETTTCCEEEE----------------ECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred             cCCCEEEEEcCCCEEEEEeccccccccc----------------ccccceeeeceeecccCCCeeEEEcCCCEEEEEECC
Confidence            9999999999999999999987422211                111245677889999999999999999999999999


Q ss_pred             chhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecc
Q 009373          468 QAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAK  512 (536)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  512 (536)
                      +++.+.......     .......+.+++|+|+|..+++++.+++
T Consensus       289 tg~~i~~~~~~~-----~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         289 TGEFIRNLVTLE-----SGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             TCCEEEEEEECT-----TGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             CCCEEEEEeccc-----CCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence            987665432111     1122344678999999999888776544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-36  Score=283.03  Aligned_cols=282  Identities=13%  Similarity=0.119  Sum_probs=229.6

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccce
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHL  234 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~  234 (536)
                      +.+.+..++++|+|+.|+.++ ++.|.+|+++++.....+.+|...|.++.  |++++|++|+.||+|++||+.++.   
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~---   91 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT---   91 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT---
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccc---
Confidence            445667889999999999886 56799999999999999999988887765  899999999999999999997753   


Q ss_pred             ecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec--CCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCE-EE
Q 009373          235 FDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW--DMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTT-VA  306 (536)
Q Consensus       235 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~-l~  306 (536)
                              ......+.+|.++|.+++|  ++++|++++.  ++.+++|++++++....+. |...|.+++  |++.+ ++
T Consensus        92 --------~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~  163 (311)
T d1nr0a1          92 --------HILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII  163 (311)
T ss_dssp             --------CCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             --------cccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeec
Confidence                    2234557789999999999  6678888875  4569999999998888877 888999887  66664 66


Q ss_pred             Eec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccce-eeeccCCCCCeE
Q 009373          307 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLL-VATWIPHTGPVN  384 (536)
Q Consensus       307 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-~~~~~~h~~~v~  384 (536)
                      +++ |+.|++||+++++....+. +|...|+++.++|+++++++|+.||.|++||+.++........ .....+|.+.|+
T Consensus       164 sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~  242 (311)
T d1nr0a1         164 SGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  242 (311)
T ss_dssp             EEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             ccccccccccccccccccccccc-cccccccccccCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            676 8999999999999888885 6999999999999999999999999999999988743221111 123457999999


Q ss_pred             EEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEE
Q 009373          385 SLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVR  462 (536)
Q Consensus       385 ~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~  462 (536)
                      +++|+|  .+|++|+.||.|+|||++++.......                ........+.++.+++++|++++.||.|+
T Consensus       243 ~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~----------------~~~~~~~~~~~~~~~~~~l~s~s~dG~i~  306 (311)
T d1nr0a1         243 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP----------------VGTRIEDQQLGIIWTKQALVSISANGFIN  306 (311)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----------------CCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred             ccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE----------------CCCCccceEEEEEecCCEEEEEECCCEEE
Confidence            999986  799999999999999998753221100                01123356778889999999999999999


Q ss_pred             EEeCC
Q 009373          463 IWNFS  467 (536)
Q Consensus       463 vW~~~  467 (536)
                      +||.+
T Consensus       307 ~wd~d  311 (311)
T d1nr0a1         307 FVNPE  311 (311)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            99974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-36  Score=280.11  Aligned_cols=284  Identities=17%  Similarity=0.213  Sum_probs=217.3

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeC-CCCceEEEEe--cCCCEEEEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSK-PLGCTIRAVA--ADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd  226 (536)
                      ..++++||.++|++++|+|++++|+||+.||+|++||+++++.+..+. .|...|.++.  +++. +++++.|+.+++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            468999999999999999999999999999999999999999988874 6788887765  6665 66778899999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-eccccEEEEeecCC
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPHDT  303 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~  303 (536)
                      ......          .........+...+.++++  ++..+ +++.++.+++|+...  ..... .+.....++.++++
T Consensus        83 ~~~~~~----------~~~~~~~~~~~~~~~~~~~s~~g~~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~s~~~~  149 (299)
T d1nr0a2          83 AGGSGV----------DSSKAVANKLSSQPLGLAVSADGDIA-VAACYKHIAIYSHGK--LTEVPISYNSSCVALSNDKQ  149 (299)
T ss_dssp             SSSSSS----------CTTSCCEEECSSCEEEEEECTTSSCE-EEEESSEEEEEETTE--EEEEECSSCEEEEEECTTSC
T ss_pred             cCCccc----------cccccccccccccccccccccccccc-ccccccccccccccc--cccccccccccccccccccc
Confidence            765321          1122233457788899999  44544 455678999999543  22221 23334445558999


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      ++++++ ++.|++||+++++........|...|++++|+|++++|++++.||.|++||+.++..   ......+.+|..+
T Consensus       150 ~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---~~~~~~~~~h~~~  226 (299)
T d1nr0a2         150 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---LAHTNSWTFHTAK  226 (299)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE---ESCCCCCCCCSSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccc
Confidence            999888 899999999988766544446899999999999999999999999999999988732   2345567789999


Q ss_pred             eEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecc-ccccEEEEE-ecCCEEEEecCC
Q 009373          383 VNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHG-FECNLLSVD-IGADRIVCGGEE  458 (536)
Q Consensus       383 v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~~~~l~sg~~D  458 (536)
                      |++++|+|  .+|++|+.||.|++||+++.....                 ...... +...+.++. +++.+|+||+.|
T Consensus       227 v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~~v~~~~~~~~~~l~s~s~D  289 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP-----------------IIIKGAHAMSSVNSVIWLNETTIVSAGQD  289 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC-----------------EEETTSSTTSCEEEEEEEETTEEEEEETT
T ss_pred             cccccccccccceEEEcCCCEEEEEECCCCCcce-----------------EEEecCCCCCcEEEEEECCCCEEEEEeCC
Confidence            99999986  699999999999999998743211                 111122 233344443 456799999999


Q ss_pred             CeEEEEeCC
Q 009373          459 GIVRIWNFS  467 (536)
Q Consensus       459 g~i~vW~~~  467 (536)
                      |+|++||++
T Consensus       290 ~~i~iWdl~  298 (299)
T d1nr0a2         290 SNIKFWNVP  298 (299)
T ss_dssp             SCEEEEECC
T ss_pred             CEEEEEecc
Confidence            999999985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-36  Score=287.93  Aligned_cols=309  Identities=19%  Similarity=0.227  Sum_probs=234.0

Q ss_pred             eeeeeCccccE-EEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcc
Q 009373          151 IDVLYGHTEAV-LTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAV  228 (536)
Q Consensus       151 ~~~l~~h~~~V-~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~  228 (536)
                      ..+|+||.+.| +|++|  ++++|+||+.||+|+|||+.+++.+.++.+|..+|.++. ..+++|++|+.||+|++|++.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccc
Confidence            56899999886 56555  688999999999999999999999999999999998887 346799999999999999987


Q ss_pred             cCccceecccCcccccceEEeeCC--ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--------------
Q 009373          229 EVLPHLFDISGSEKQNTQFRLWEH--EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------------  290 (536)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------------  290 (536)
                      ...             .......+  ........+  ++..+++++.|+.|++||+.+........              
T Consensus        83 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d1nexb2          83 KGC-------------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  149 (355)
T ss_dssp             TTE-------------EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTT
T ss_pred             ccc-------------cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceecccc
Confidence            653             22222222  223333344  55789999999999999988765432211              


Q ss_pred             ----------ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          291 ----------HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       291 ----------~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                                |...+....+++++++.+. |+.+++||+.+++.+.... ++...+.++.++|++.++++++.||.|++|
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  228 (355)
T d1nexb2         150 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIW  228 (355)
T ss_dssp             CTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             ccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeee-ccccccccccccccceeeecccccceEEee
Confidence                      3445566668889888888 8999999999999888875 588889999999999999999999999999


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE  439 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (536)
                      |+.++      ..+..+.+|...|.++++++++|++|+.||.|++||+++..+...                  ..+...
T Consensus       229 d~~~~------~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------~~~~~~  284 (355)
T d1nexb2         229 DLENG------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFS------------------YHHTNL  284 (355)
T ss_dssp             ETTTC------CEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEEE------------------EECTTC
T ss_pred             ecccc------ccccccccccccccccccccceeeeeecccccccccccccceecc------------------cccCCc
Confidence            99988      678888999999999999999999999999999999987532211                  011122


Q ss_pred             ccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEee
Q 009373          440 CNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVA  510 (536)
Q Consensus       440 ~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  510 (536)
                      ..+..+.+++.++++| .||.|++||+.+++.+......         ....+.+++|+|+ ..+++++.+
T Consensus       285 ~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~---------~~~~V~~v~~~~~-~~~~~~s~d  344 (355)
T d1nexb2         285 SAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILK---------DADQIWSVNFKGK-TLVAAVEKD  344 (355)
T ss_dssp             CCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTT---------TCSEEEEEEEETT-EEEEEEESS
T ss_pred             eEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecC---------CCCCEEEEEEcCC-eEEEEEECC
Confidence            3344556666666665 5899999999998766432111         1234678889886 355555544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-35  Score=273.06  Aligned_cols=281  Identities=17%  Similarity=0.271  Sum_probs=234.7

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccC
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      ++.+.+|...|+|++|  ++++||||+.||+|+|||+.+++++.++.+|...|.++++++++|++|+.||.|++|++..+
T Consensus         8 i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred             EeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccc
Confidence            4566688899999765  79999999999999999999999999999999999999999999999999999999999775


Q ss_pred             ccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEee---e-ccccEEEEeecCCEEE
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL---R-HSDWVYGLAPHDTTVA  306 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~-~~~~v~~~~~~~~~l~  306 (536)
                      .             .......+.............++++..++.+.+||..+.......   . |...+..+.+....++
T Consensus        86 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  152 (293)
T d1p22a2          86 E-------------MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV  152 (293)
T ss_dssp             C-------------EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE
T ss_pred             c-------------ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccc
Confidence            3             233333444455555557789999999999999999876543322   2 7788888887777777


Q ss_pred             Eec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEE
Q 009373          307 STS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNS  385 (536)
Q Consensus       307 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~  385 (536)
                      +++ |+.+++||+++++.+..+. ++...+..+.++  +.++++++.||.|++||+++.      ..+....+|...|..
T Consensus       153 ~~s~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~  223 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRC  223 (293)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEE
T ss_pred             cccCCCceeeecCCCCcEEEEEc-ccccccccccCC--CCeEEEecCCCEEEEEecccc------eeeeeecccceeeee
Confidence            776 8999999999999998885 577888887775  578999999999999999988      677888899999999


Q ss_pred             EEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEe
Q 009373          386 LAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWN  465 (536)
Q Consensus       386 l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~  465 (536)
                      +..++.+|++|+.||.|++||+.+.........          ......+.+|...|.++++++.+|+|||.||+|++||
T Consensus       224 ~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG----------TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT----------TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             ccccceEEEEEcCCCEEEEEECCCCccccccCC----------ceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            888899999999999999999987544432221          2234557789999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-35  Score=285.35  Aligned_cols=294  Identities=14%  Similarity=0.094  Sum_probs=223.2

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--eeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGF--SIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      +.++|+|++|+|++++||+|+.||.|+|||+.+++  .+..+.+|..+|.++.  |++++|++|+.|++|++||+.++. 
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~-   84 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT-   84 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE-
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc-
Confidence            34789999999999999999999999999998775  6677889999887765  899999999999999999997643 


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee----e-ccccEEEEe--ecCC
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL----R-HSDWVYGLA--PHDT  303 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~----~-~~~~v~~~~--~~~~  303 (536)
                                ......+.+|...|.+++|  +++.|++|+.|++|++|++.........    . |...|.+++  |+++
T Consensus        85 ----------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~  154 (371)
T d1k8kc_          85 ----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV  154 (371)
T ss_dssp             ----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS
T ss_pred             ----------cccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccccccccccc
Confidence                      2345566789999999999  7789999999999999998765433222    2 778898887  8899


Q ss_pred             EEEEec-CCcEEEEeCCCCc------------------EEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          304 TVASTS-GSDVYIWDTNSGC------------------LLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~------------------~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      +|++++ |+.+++||.....                  .+... .+|...|.+++|+|++++|++++.||.|++||+..+
T Consensus       155 ~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred             ceeccccCcEEEEEeeccCccccccccccccccccceeeeeec-cCccCcEEEEEeecccccccccccCCcceEEeeecc
Confidence            999988 9999999986532                  33333 368889999999999999999999999999999888


Q ss_pred             ccccccceeeeccCCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcccccCCCC----CCCce-----------------
Q 009373          365 CTEANVLLVATWIPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKLLRSGRPT----SGKRV-----------------  422 (536)
Q Consensus       365 ~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~----~~~~~-----------------  422 (536)
                            ..+..+..|..+|.+++|++ ..+++++.|+.+++|+...........    .....                 
T Consensus       234 ------~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (371)
T d1k8kc_         234 ------MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  307 (371)
T ss_dssp             ------TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             ------cceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccce
Confidence                  67888889999999999976 566666778888777654322111100    00000                 


Q ss_pred             -eeEEeeCCCeeeeccccccEEEEEecC------CEEEEecCCCeEEEEeCCc
Q 009373          423 -SRVIEVEPPQRMLHGFECNLLSVDIGA------DRIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       423 -~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~sg~~Dg~i~vW~~~~  468 (536)
                       ...............|...|.++.+.+      ..++|+|.||.|++||+++
T Consensus       308 ~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence             000000011111234777787777532      2699999999999999865

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.3e-34  Score=270.09  Aligned_cols=245  Identities=18%  Similarity=0.233  Sum_probs=208.6

Q ss_pred             cCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee--eeeCCCCceEEEEe--cCCCEEEEEeC--
Q 009373          145 FLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI--ASSKPLGCTIRAVA--ADKKLLVAGGT--  218 (536)
Q Consensus       145 ~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~--~~~~~~~~~v~~~~--~~~~~l~sg~~--  218 (536)
                      .......+.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.++...  ..+..|...|.++.  +++++|++++.  
T Consensus        45 ~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~  124 (311)
T d1nr0a1          45 VGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR  124 (311)
T ss_dssp             TTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccc
Confidence            3344567788999999999999999999999999999999999887643  45677888887665  88999999886  


Q ss_pred             CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCCeEEEEeCCCceEeEeee-cccc
Q 009373          219 DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCLKVLR-HSDW  294 (536)
Q Consensus       219 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~  294 (536)
                      +..+++|+++++.             ....+.+|.+.|.+++|  +++ .|++|+.||.|++||+++++....+. |...
T Consensus       125 ~~~~~v~~~~~~~-------------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~  191 (311)
T d1nr0a1         125 ERFGHVFLFDTGT-------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF  191 (311)
T ss_dssp             SCSEEEEETTTCC-------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred             ccccccccccccc-------------ccccccccccccccccccccceeeeccccccccccccccccccccccccccccc
Confidence            4569999997753             34457789999999999  444 58899999999999999999888887 8889


Q ss_pred             EEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc------cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          295 VYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN------GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       295 v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~------~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      |.++.  |+++++++++ |+.|++||+.++.....+.      .+|.+.|++++|+|++++|++|+.||.|+|||++++ 
T Consensus       192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-  270 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-  270 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-
Confidence            99888  7899999888 8999999999998887764      257889999999999999999999999999999988 


Q ss_pred             cccccceeeeccCCC---CCeEEEEEcCCeEEEEeCCCcEEEEECC
Q 009373          366 TEANVLLVATWIPHT---GPVNSLAFEFPWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       366 ~~~~~~~~~~~~~h~---~~v~~l~~~~~~l~s~s~dg~i~vwd~~  408 (536)
                           +++.++..|.   ..+.++.|+++.|++++.||.|++||++
T Consensus       271 -----~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         271 -----KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             -----EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             -----cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence                 5666665553   4667888899999999999999999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=267.85  Aligned_cols=266  Identities=11%  Similarity=0.142  Sum_probs=220.8

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEc
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRA  227 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~  227 (536)
                      .++++|+||.++|++++|+|    |+||+.||+|++||+.++     ...|...|.++. .++..+++++.|+++++|++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            36889999999999999987    999999999999998765     357888888887 45678899999999999987


Q ss_pred             ccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEeecCCEEE
Q 009373          228 VEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLAPHDTTVA  306 (536)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~l~  306 (536)
                      ...                    .....+..+.+ .+..++..+.++.+.+|+..+++....+.....+.++.+++..++
T Consensus        75 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (287)
T d1pgua2          75 TKH--------------------EFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVA  134 (287)
T ss_dssp             EEE--------------------ECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEE
T ss_pred             ccc--------------------ccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCccee
Confidence            432                    12334666777 445666667788899999999999999888888888998888887


Q ss_pred             Eec-C-CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          307 STS-G-SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       307 ~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      +++ + +.+++|++...+....+...|...+++++|+|++.+|++|+.||.|++||+.++.     .....+.+|..+|+
T Consensus       135 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~-----~~~~~~~~h~~~v~  209 (287)
T d1pgua2         135 VGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE-----VKTSRWAFRTSKIN  209 (287)
T ss_dssp             EEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----EEECCSCCCSSCEE
T ss_pred             eeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccc-----cccccccccccccc
Confidence            776 4 5799999988777777766788899999999999999999999999999998873     23345678999999


Q ss_pred             EEEEcC------------CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-E
Q 009373          385 SLAFEF------------PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-R  451 (536)
Q Consensus       385 ~l~~~~------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~  451 (536)
                      +++|+|            .+|++|+.|++|++||+++.                  ......+.+|...|.++.++++ .
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~------------------~~~~~~~~~h~~~V~~v~~~~~~~  271 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP------------------MKIIKALNAHKDGVNNLLWETPST  271 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCT------------------TCCEEETTSSTTCEEEEEEEETTE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCC------------------CeEEEEeCCCCCCeEEEEECCCCE
Confidence            999975            48999999999999999764                  2334456788889999987665 8


Q ss_pred             EEEecCCCeEEEEeC
Q 009373          452 IVCGGEEGIVRIWNF  466 (536)
Q Consensus       452 l~sg~~Dg~i~vW~~  466 (536)
                      |+|+|.||.|++|++
T Consensus       272 l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         272 LVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETTSCEEEEEE
T ss_pred             EEEEECCCeEEEEEE
Confidence            999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-32  Score=258.06  Aligned_cols=235  Identities=19%  Similarity=0.251  Sum_probs=205.6

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCC--ceeeeeCCCCceEEE--EecCCCEEEEEeCCCcEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDG--FSIASSKPLGCTIRA--VAADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~--~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~vwd  226 (536)
                      .....+|.+.|.+++|+|++++|++|+.||+|++||+...  +....+..|...+.+  +++++..+++++.|+.|++|+
T Consensus        90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3455689999999999999999999999999999998754  455667777776655  458999999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecC
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHD  302 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~  302 (536)
                      +.++.             ......+|...|.+++|  ++..+++++.|+.|++||+++++.+..+.+...|.+++  +++
T Consensus       170 ~~~~~-------------~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~  236 (337)
T d1gxra_         170 LHNQT-------------LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG  236 (337)
T ss_dssp             TTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTS
T ss_pred             ccccc-------------ccccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccc
Confidence            97653             45567789999999999  67899999999999999999999999999999999887  788


Q ss_pred             CEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCC
Q 009373          303 TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTG  381 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~  381 (536)
                      +++++++ ++.+++||+++++.....  .|...|++++|+|++++|++|+.||.|++||+.++      ..+.. ..|..
T Consensus       237 ~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~------~~~~~-~~~~~  307 (337)
T d1gxra_         237 EWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG------ASIFQ-SKESS  307 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC------CEEEE-EECSS
T ss_pred             cccceecccccccccccccccccccc--ccccccceEEECCCCCEEEEEeCCCeEEEEECCCC------CEEEE-ccCCC
Confidence            8998887 899999999999876554  59999999999999999999999999999999888      44444 35889


Q ss_pred             CeEEEEEcC--CeEEEEeCCCcEEEEEC
Q 009373          382 PVNSLAFEF--PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       382 ~v~~l~~~~--~~l~s~s~dg~i~vwd~  407 (536)
                      .|++++|+|  ++|++|+.||+|+|||+
T Consensus       308 ~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         308 SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            999999986  69999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-31  Score=255.73  Aligned_cols=296  Identities=19%  Similarity=0.277  Sum_probs=222.9

Q ss_pred             hccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceE----EEEecCCCEEEEE
Q 009373          141 RSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTI----RAVAADKKLLVAG  216 (536)
Q Consensus       141 ~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~l~sg  216 (536)
                      +.|.......++++.+|.++|++++|+|+ .+|++|+.|++|++|+.................    ....+++..++++
T Consensus        36 ~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (355)
T d1nexb2          36 RVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG  114 (355)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEE
T ss_pred             EEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeee
Confidence            33333444568899999999999999985 689999999999999999988777665443322    2234788899999


Q ss_pred             eCCCcEEEEEcccCcccee----------cccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEe
Q 009373          217 GTDGFIHCWRAVEVLPHLF----------DISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCL  286 (536)
Q Consensus       217 ~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~  286 (536)
                      +.|+.|++||+.+......          ................|...+.....+++.++++..|+.|++||+.+++.+
T Consensus       115 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~  194 (355)
T d1nexb2         115 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL  194 (355)
T ss_dssp             ETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccce
Confidence            9999999999977542111          111112223344556788888888889999999999999999999999988


Q ss_pred             Eeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcc
Q 009373          287 KVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEII  362 (536)
Q Consensus       287 ~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~  362 (536)
                      .... +...+.++.  +++..+++++ |+.|++||++++..+..+. +|...|.+++++  +++|++|+.||.|++||++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         195 YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCCCEEEEC--SSEEEEECTTSEEEEEETT
T ss_pred             eeeeccccccccccccccceeeecccccceEEeeeccccccccccc-cccccccccccc--cceeeeeeccccccccccc
Confidence            8776 555555554  7888888887 8999999999999999886 699999999986  4799999999999999998


Q ss_pred             cCccccccceeeeccCCCCCeEEEEE-cC-CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          363 NDCTEANVLLVATWIPHTGPVNSLAF-EF-PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       363 ~~~~~~~~~~~~~~~~h~~~v~~l~~-~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                      +..        ..+..|...+.++.+ ++ +.+++++.||.|++||+++++...                  ..+.+|..
T Consensus       272 ~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~------------------~~~~~~~~  325 (355)
T d1nexb2         272 DYS--------RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH------------------ANILKDAD  325 (355)
T ss_dssp             TCC--------EEEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCC------------------SCTTTTCS
T ss_pred             ccc--------eecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEE------------------EEecCCCC
Confidence            762        223456666665544 32 444555569999999998853221                  23466788


Q ss_pred             cEEEEEecCC-EEEEecCCCeEEEEeC
Q 009373          441 NLLSVDIGAD-RIVCGGEEGIVRIWNF  466 (536)
Q Consensus       441 ~v~~~~~~~~-~l~sg~~Dg~i~vW~~  466 (536)
                      .|.+++++++ .+++++.||.++||.+
T Consensus       326 ~V~~v~~~~~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         326 QIWSVNFKGKTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred             CEEEEEEcCCeEEEEEECCCcEEEEEE
Confidence            8999999998 6677899999766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-30  Score=246.09  Aligned_cols=287  Identities=21%  Similarity=0.382  Sum_probs=235.8

Q ss_pred             CccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEE
Q 009373          147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWR  226 (536)
Q Consensus       147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd  226 (536)
                      ....++++.+|.+.|.+++|+|  ++|++|+.|+++++|+............+...+......+..++.+..|+.+.+|+
T Consensus        46 ~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  123 (342)
T d2ovrb2          46 TGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD  123 (342)
T ss_dssp             TCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred             CCCEEEEEeCCCCCEEEEEeCC--CccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEee
Confidence            3346789999999999999986  49999999999999999998888888888888888888888999999999999999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCEE
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTV  305 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l  305 (536)
                      ..++.             ....+..+.............+++++.|+.|++||....+.+..+. |...+..+.+++..+
T Consensus       124 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l  190 (342)
T d2ovrb2         124 IETGQ-------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV  190 (342)
T ss_dssp             SSSCC-------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEE
T ss_pred             ccccc-------------ceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEE
Confidence            87753             3334444555555555578899999999999999999999888877 888888888999999


Q ss_pred             EEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeE
Q 009373          306 ASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVN  384 (536)
Q Consensus       306 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~  384 (536)
                      ++++ |+.|++||++.++.+..+. +|...+.++.++  +++|++|+.||.|++||+.....   ...+.....|...+.
T Consensus       191 ~s~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         191 VSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQC---LQTLQGPNKHQSAVT  264 (342)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE---EEEECSTTSCSSCEE
T ss_pred             EEEeCCCeEEEeecccceeeeEec-ccccceeEEecC--CCEEEEEcCCCEEEEEecccccc---cccccccceeeecee
Confidence            9988 9999999999999998885 688899888776  46999999999999999988732   123344456788999


Q ss_pred             EEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCe--
Q 009373          385 SLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGI--  460 (536)
Q Consensus       385 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~--  460 (536)
                      ++.++++++++|+.||.|++||+++++...         .+...     ...+|...|.+++++++  ++++|+.||+  
T Consensus       265 ~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~---------~~~~~-----~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~  330 (342)
T d2ovrb2         265 CLQFNKNFVITSSDDGTVKLWDLKTGEFIR---------NLVTL-----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEE  330 (342)
T ss_dssp             EEEECSSEEEEEETTSEEEEEETTTCCEEE---------EEEEC-----TTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred             ecccCCCeeEEEcCCCEEEEEECCCCCEEE---------EEecc-----cCCCCCCCEEEEEECCCCCEEEEEeCCCCCe
Confidence            999999999999999999999998753221         11100     12457778888888777  8899999985  


Q ss_pred             --EEEEeCCc
Q 009373          461 --VRIWNFSQ  468 (536)
Q Consensus       461 --i~vW~~~~  468 (536)
                        |++|||+.
T Consensus       331 ~~l~~~Df~~  340 (342)
T d2ovrb2         331 TKLLVLDFDV  340 (342)
T ss_dssp             CEEEEEECCC
T ss_pred             eEEEEEeCCC
Confidence              99999975

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3.4e-30  Score=242.10  Aligned_cols=240  Identities=23%  Similarity=0.319  Sum_probs=212.4

Q ss_pred             CccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEeCCCcEEE
Q 009373          147 GRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGGTDGFIHC  224 (536)
Q Consensus       147 ~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~v  224 (536)
                      ....+.++.+|.+.|.+++|+|++.++++++.++.+.+|+.........+..|...+.++  .++++.+++++.|+.+++
T Consensus        48 ~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  127 (317)
T d1vyhc1          48 TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM  127 (317)
T ss_dssp             TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred             CCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeE
Confidence            344678999999999999999999999999999999999999998888888888777655  488999999999999999


Q ss_pred             EEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--
Q 009373          225 WRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--  299 (536)
Q Consensus       225 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--  299 (536)
                      ||+.++.             ....+.+|...+.++++  ++.+|++++.|+.|++|+..+++....+. +...+.++.  
T Consensus       128 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~  194 (317)
T d1vyhc1         128 WEVQTGY-------------CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA  194 (317)
T ss_dssp             EETTTCC-------------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred             eecccce-------------eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEe
Confidence            9997653             56677889999999999  67899999999999999999998888776 666666654  


Q ss_pred             e--------------------cCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEE
Q 009373          300 P--------------------HDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHM  358 (536)
Q Consensus       300 ~--------------------~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~i  358 (536)
                      +                    .+.++++++ |+.|++||+++++++..+. +|...|.+++++|++++|++|+.||.|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~i  273 (317)
T d1vyhc1         195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRV  273 (317)
T ss_dssp             CSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred             eccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe-CCCCCEEEEEECCCCCEEEEEECCCeEEE
Confidence            2                    245677776 8999999999999999886 69999999999999999999999999999


Q ss_pred             EEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEE
Q 009373          359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLID  406 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd  406 (536)
                      ||+.++      .++..+.+|.++|++++|+|  .+|++|+.||+|+|||
T Consensus       274 wd~~~~------~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         274 WDYKNK------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             ECCTTS------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EECCCC------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999988      67888899999999999986  6999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.1e-30  Score=250.82  Aligned_cols=238  Identities=21%  Similarity=0.292  Sum_probs=195.2

Q ss_pred             eeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEccc
Q 009373          152 DVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVE  229 (536)
Q Consensus       152 ~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~  229 (536)
                      ....+|...|++++|+|++++|++|+.||+|++||..+++.+....+|...|.++.  +++..+++|+.++.+++||..+
T Consensus       115 ~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~  194 (388)
T d1erja_         115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  194 (388)
T ss_dssp             ----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence            44567899999999999999999999999999999999999999999999887765  7888999999999999999876


Q ss_pred             CccceecccCcccccceEEeeCCccCEEEEEE---eCCEEEEEecCCeEEEEeCCCceEeEeee--------ccccEEEE
Q 009373          230 VLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---DLTRIYSGSWDMTVRVWDRALLKCLKVLR--------HSDWVYGL  298 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~  298 (536)
                      ..             ...... +.....++.+   ++.+|++|+.||.|++||..++.....+.        |...|.++
T Consensus       195 ~~-------------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  260 (388)
T d1erja_         195 GQ-------------CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  260 (388)
T ss_dssp             TE-------------EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             cc-------------cccccc-cccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEE
Confidence            42             233333 3344555555   67899999999999999999988776653        56788888


Q ss_pred             e--ecCCEEEEec-CCcEEEEeCCCCcEEEE-----------EccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccC
Q 009373          299 A--PHDTTVASTS-GSDVYIWDTNSGCLLTV-----------VNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       299 ~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~-----------~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~  364 (536)
                      .  +++++|++++ |+.|++||++++.....           ....|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus       261 ~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             EECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            7  7889999888 89999999987643221           11257889999999999999999999999999999988


Q ss_pred             ccccccceeeeccCCCCCeEEEEEc------C--CeEEEEeCCCcEEEEECCc
Q 009373          365 CTEANVLLVATWIPHTGPVNSLAFE------F--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       365 ~~~~~~~~~~~~~~h~~~v~~l~~~------~--~~l~s~s~dg~i~vwd~~~  409 (536)
                            .++.++.+|.+.|+++++.      |  .+|++|+.||+|+|||++.
T Consensus       341 ------~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k  387 (388)
T d1erja_         341 ------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  387 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ------cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence                  6788899999999999874      2  5899999999999999864

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.1e-30  Score=250.59  Aligned_cols=251  Identities=16%  Similarity=0.149  Sum_probs=195.7

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vw  225 (536)
                      .+..+++|.++|++++|+|++++|++|+.|++|+|||+.++..  ...+.+|...+.++.  |+++.|++|+.|++|++|
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  122 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceee
Confidence            4678999999999999999999999999999999999987754  444567777776654  899999999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce------------------E
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK------------------C  285 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~------------------~  285 (536)
                      ++.....         ..........|.+.|.+++|  ++.+|++|+.|++|++||.....                  .
T Consensus       123 ~~~~~~~---------~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         123 YFEQEND---------WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             EEETTTT---------EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             eeecccc---------cccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceee
Confidence            9876531         11223445678999999999  67899999999999999975432                  2


Q ss_pred             eEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEc
Q 009373          286 LKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEI  361 (536)
Q Consensus       286 ~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~  361 (536)
                      ..... |...|.+++  |+++++++++ |+.|++||+.+++.+..+. .|..+|.+++|+|++.+|++|+ |+.+++|..
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             eeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee-cccccceeeeecCCCCEEEEEc-CCceEEEEe
Confidence            22222 777888876  8899999888 8999999999999999886 5899999999999998887665 777777765


Q ss_pred             ccCccccc----------------------------------c-ceeeeccCCCCCeEEEEEcC------CeEEEEeCCC
Q 009373          362 INDCTEAN----------------------------------V-LLVATWIPHTGPVNSLAFEF------PWLVSAAGDG  400 (536)
Q Consensus       362 ~~~~~~~~----------------------------------~-~~~~~~~~h~~~v~~l~~~~------~~l~s~s~dg  400 (536)
                      ........                                  . ........|.+.|+++++.+      ..++|+|.||
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg  351 (371)
T d1k8kc_         272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG  351 (371)
T ss_dssp             ETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTS
T ss_pred             eCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCC
Confidence            43211000                                  0 00011124889999999843      4689999999


Q ss_pred             cEEEEECCccc
Q 009373          401 KLSLIDVRKLL  411 (536)
Q Consensus       401 ~i~vwd~~~~~  411 (536)
                      .|++||+++.+
T Consensus       352 ~v~iW~~~~~~  362 (371)
T d1k8kc_         352 GMSIWDVRSLE  362 (371)
T ss_dssp             EEEEEEHHHHH
T ss_pred             eEEEEeCCcCh
Confidence            99999998753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-29  Score=239.86  Aligned_cols=279  Identities=14%  Similarity=0.113  Sum_probs=206.7

Q ss_pred             cEEEEEEecCCCEEEEEeCCC-cEEEEECCCC--ceeeeeCCCC-ceEEEE--ec--CCCEEEEEeCCCcEEEEEcccCc
Q 009373          160 AVLTVFVLASAKLLFTSGYDS-IVRMWHLEDG--FSIASSKPLG-CTIRAV--AA--DKKLLVAGGTDGFIHCWRAVEVL  231 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg-~v~iwd~~~~--~~~~~~~~~~-~~v~~~--~~--~~~~l~sg~~dg~i~vwd~~~~~  231 (536)
                      .+++++|+|+++.|+.++.+. .|+.|+....  ..+..+.+|. ..+.++  +|  ++.+|++|+.||+|++||+..+.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            457889999999999887554 3566765443  3466677764 456555  45  56799999999999999987653


Q ss_pred             cceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe--cCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCC-
Q 009373          232 PHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS--WDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDT-  303 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~-  303 (536)
                      ....     ........+..|.++|.+++|  ++.++++++  .++.+++|+..+++.+..+. |...|.++.  +++. 
T Consensus        99 ~~~~-----~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  173 (325)
T d1pgua1          99 ESNS-----VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM  173 (325)
T ss_dssp             GGTE-----EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred             ceee-----eecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccc
Confidence            2100     011122345678999999999  667777665  46789999999999988887 889999887  5554 


Q ss_pred             EEEEec-CCcEEEEeCCCCcEEEEEcc--ccccceEEEEEeCC-CCEEEEEcCCCcEEEEEcccCccccccceeeeccCC
Q 009373          304 TVASTS-GSDVYIWDTNSGCLLTVVNG--AHVGNTKSLARSHT-GDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPH  379 (536)
Q Consensus       304 ~l~~~~-d~~i~i~d~~~~~~~~~~~~--~~~~~i~~l~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h  379 (536)
                      .+++++ |+.+++||...++....+..  +|...|++++|+|+ +.+|++|+.||.|++||++++      ..+..+.+|
T Consensus       174 ~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~------~~~~~l~~~  247 (325)
T d1pgua1         174 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDD  247 (325)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------CEEEECCBT
T ss_pred             eEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc------ccccccccc
Confidence            455565 89999999998887766643  56778999999996 688999999999999999888      677788888


Q ss_pred             CCCeEEEEE----c-CCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeecccc--ccEEEEEecCC-E
Q 009373          380 TGPVNSLAF----E-FPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFE--CNLLSVDIGAD-R  451 (536)
Q Consensus       380 ~~~v~~l~~----~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~-~  451 (536)
                      ..++.++.|    . +.+|++++.|+.|+|||+++.+.....                 ..+++.  ....++.+.++ +
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~  310 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW-----------------TLDKQQLGNQQVGVVATGNGR  310 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEE-----------------ECCTTCGGGCEEEEEEEETTE
T ss_pred             ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEE-----------------EecCCcccCeEEEEEECCCCE
Confidence            776654444    3 369999999999999999875322110                 112222  33445555554 8


Q ss_pred             EEEecCCCeEEEEeC
Q 009373          452 IVCGGEEGIVRIWNF  466 (536)
Q Consensus       452 l~sg~~Dg~i~vW~~  466 (536)
                      |++||.||.|++||+
T Consensus       311 l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         311 IISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEETTSCEEEEET
T ss_pred             EEEEECCCEEEEEEC
Confidence            999999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.8e-29  Score=229.37  Aligned_cols=246  Identities=23%  Similarity=0.352  Sum_probs=212.0

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      .....++++.+|.+.|++++|  ++++|+||+.|++|++|++..+........+........+....++++..++.+.+|
T Consensus        43 ~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (293)
T d1p22a2          43 NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW  120 (293)
T ss_dssp             SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEe
Confidence            344568899999999999987  578999999999999999999998888888877788888888899999999999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEeecCCE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTT  304 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~  304 (536)
                      +..+..          .......+..|...|..+.+.+..+++++.|+.|++||..+++.+..+. +...+..+.+++..
T Consensus       121 ~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  190 (293)
T d1p22a2         121 DMASPT----------DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL  190 (293)
T ss_dssp             ECSSSS----------CCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTE
T ss_pred             eccccc----------cccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCe
Confidence            987653          2234556678999999999999999999999999999999999988887 77888888888888


Q ss_pred             EEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccc---cccceeeeccCCC
Q 009373          305 VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTE---ANVLLVATWIPHT  380 (536)
Q Consensus       305 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~~~~~~~h~  380 (536)
                      +++++ |+.|++||+++.+.+..+. +|...+..  +.+++.+|++|+.||.|++||+......   .....+..+.+|.
T Consensus       191 l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~  267 (293)
T d1p22a2         191 VVSGSSDNTIRLWDIECGACLRVLE-GHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS  267 (293)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS
T ss_pred             EEEecCCCEEEEEecccceeeeeec-ccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC
Confidence            88888 8999999999999988885 57777765  5567889999999999999998764322   2234677889999


Q ss_pred             CCeEEEEEcCCeEEEEeCCCcEEEEE
Q 009373          381 GPVNSLAFEFPWLVSAAGDGKLSLID  406 (536)
Q Consensus       381 ~~v~~l~~~~~~l~s~s~dg~i~vwd  406 (536)
                      +.|++++|++.+|++||.||+|+|||
T Consensus       268 ~~V~~v~~d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         268 GRVFRLQFDEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEEcCCEEEEEecCCEEEEeC
Confidence            99999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=4.1e-29  Score=237.67  Aligned_cols=276  Identities=16%  Similarity=0.230  Sum_probs=222.1

Q ss_pred             hcCChhhHHHHHhHhCCCCCCCCCCCCCCCCCCchhhhhhhhhhccccCCccceeeeeCccccEEEEEEecCCCEEEEEe
Q 009373           98 ASDHHAWKEFYCERWGLPIASAPLGAGFSDDKSWKELFVEREFRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSG  177 (536)
Q Consensus        98 ~~~~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~Wk~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs  177 (536)
                      +++|.  ..+++..|......+.+.+.+...+.|..            .....+..+.+|...|.+++|+|++.++++|+
T Consensus        51 L~GH~--~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~  116 (340)
T d1tbga_          51 LRGHL--AKIYAMHWGTDSRLLVSASQDGKLIIWDS------------YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG  116 (340)
T ss_dssp             ECCCS--SCEEEEEECTTSSEEEEEETTTEEEEEET------------TTTEEEEEEECSCSCEEEEEECTTSSEEEEEE
T ss_pred             ECCCC--CCEEEEEECCCCCEEEEEECCCceeeeec------------ccceeEEEEecccccEEeeEeeccceeeeeec
Confidence            34555  44566677643333333333333445543            23345788999999999999999999999999


Q ss_pred             CCCcEEEEECCCC----ceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCC
Q 009373          178 YDSIVRMWHLEDG----FSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH  252 (536)
Q Consensus       178 ~dg~v~iwd~~~~----~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h  252 (536)
                      .|+.+++|+....    .....+.+|........ ..+..+..+..|+....+.....             ........+
T Consensus       117 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~  183 (340)
T d1tbga_         117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-------------QQTTTFTGH  183 (340)
T ss_dssp             TTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTT-------------EEEEEEECC
T ss_pred             ccceeecccccccccccccceecccccccccccccccccccccccccccccccccccc-------------ccccccccc
Confidence            9999999998654    34556677776655554 66778888999999999987553             234445567


Q ss_pred             ccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEE
Q 009373          253 EGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTV  326 (536)
Q Consensus       253 ~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~  326 (536)
                      ...+....+  .+..+++|+.|+.|++||+++++++..+. |...|.+++  |++.+|++++ |+.|++||++....+..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~  263 (340)
T d1tbga_         184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT  263 (340)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccc
Confidence            778888877  66789999999999999999999998887 889999887  7899999988 89999999999988776


Q ss_pred             Ec-cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEE
Q 009373          327 VN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLS  403 (536)
Q Consensus       327 ~~-~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~  403 (536)
                      +. ..+...+.+++|+|++++|++|+.||.|++||+.++      .++..+.+|.++|++++|+|  .+|++|+.||.|+
T Consensus       264 ~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~  337 (340)
T d1tbga_         264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK  337 (340)
T ss_dssp             ECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEE
Confidence            63 346678999999999999999999999999999988      67888999999999999986  6999999999999


Q ss_pred             EEE
Q 009373          404 LID  406 (536)
Q Consensus       404 vwd  406 (536)
                      |||
T Consensus       338 iWd  340 (340)
T d1tbga_         338 IWN  340 (340)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-29  Score=240.32  Aligned_cols=287  Identities=11%  Similarity=0.071  Sum_probs=206.4

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCcee---eeeCCCCceEEEEe--cC-CCEEEEEeCCCcEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSI---ASSKPLGCTIRAVA--AD-KKLLVAGGTDGFIH  223 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~---~~~~~~~~~v~~~~--~~-~~~l~sg~~dg~i~  223 (536)
                      .++.+++|++.|++|+|+|++++||+|+.||+|+|||+.++...   ....+|..+|.+++  ++ +.+|++|+.||.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            47788999999999999999999999999999999999766432   33346888887765  54 56899999999999


Q ss_pred             EEEcccCccceecccCcccccceEEeeCCccC-EEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---------c
Q 009373          224 CWRAVEVLPHLFDISGSEKQNTQFRLWEHEGP-ITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---------H  291 (536)
Q Consensus       224 vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------~  291 (536)
                      +|++....             .......+... .....+  +...+++++.|+++++||++++.......         .
T Consensus        83 ~w~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~  149 (342)
T d1yfqa_          83 KVDLIGSP-------------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKV  149 (342)
T ss_dssp             EECSSSSS-------------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSS
T ss_pred             eeeccccc-------------ccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccc
Confidence            99987653             22222222222 222222  77899999999999999986543322221         2


Q ss_pred             cccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEE--ccccccceEEEEEe-CCCCEEEEEcCCCcEEEEEcccCccc
Q 009373          292 SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVV--NGAHVGNTKSLARS-HTGDFLFTGGEDGAIHMYEIINDCTE  367 (536)
Q Consensus       292 ~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~--~~~~~~~i~~l~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~  367 (536)
                      ......+.+.+..+++++ |+.|++||+...+.....  ...+...+.+..+. +++..+++++.||.+.+|++......
T Consensus       150 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~  229 (342)
T d1yfqa_         150 KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD  229 (342)
T ss_dssp             CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS
T ss_pred             eeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcce
Confidence            223445567788888777 899999999876543221  12344455555554 46789999999999999998765322


Q ss_pred             ccc---------ceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeec
Q 009373          368 ANV---------LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLH  436 (536)
Q Consensus       368 ~~~---------~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (536)
                      ...         .......+|...|++++|+|  .+|++|+.||.|++||+++......                  ...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~------------------~~~  291 (342)
T d1yfqa_         230 YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN------------------FAK  291 (342)
T ss_dssp             TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE------------------CCC
T ss_pred             eeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEE------------------ecC
Confidence            111         11222346778999999987  7999999999999999987532211                  123


Q ss_pred             cccccEEEEEecCCEEEEecCCCeEEEEeCC
Q 009373          437 GFECNLLSVDIGADRIVCGGEEGIVRIWNFS  467 (536)
Q Consensus       437 ~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~  467 (536)
                      .+...+.+++++++++++|+.|+.+++|...
T Consensus       292 ~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         292 FNEDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             CSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             CCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence            4667789999999999999999888877654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.1e-28  Score=231.85  Aligned_cols=239  Identities=16%  Similarity=0.168  Sum_probs=187.7

Q ss_pred             cceeeeeCc-cccEEEEEEec--CCCEEEEEeCCCcEEEEECCCCcee--------eeeCCCCceEEEEe--cCCCEEEE
Q 009373          149 YSIDVLYGH-TEAVLTVFVLA--SAKLLFTSGYDSIVRMWHLEDGFSI--------ASSKPLGCTIRAVA--ADKKLLVA  215 (536)
Q Consensus       149 ~~~~~l~~h-~~~V~~v~~~~--~~~~l~sgs~dg~v~iwd~~~~~~~--------~~~~~~~~~v~~~~--~~~~~l~s  215 (536)
                      ..+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+..++..        ..+..|..+|.++.  +++..+++
T Consensus        53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~  132 (325)
T d1pgua1          53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  132 (325)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence            346677888 46899999998  5679999999999999998765432        22355667776654  88898887


Q ss_pred             EeC--CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eC-CEEEEEecCCeEEEEeCCCceEeEeee
Q 009373          216 GGT--DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DL-TRIYSGSWDMTVRVWDRALLKCLKVLR  290 (536)
Q Consensus       216 g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~  290 (536)
                      ++.  ++.+.+|++.++.             ....+.+|...|.+++|  ++ ..+++++.|+.+++||..+.+....+.
T Consensus       133 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~  199 (325)
T d1pgua1         133 VGEGRDNFGVFISWDSGN-------------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR  199 (325)
T ss_dssp             EECCSSCSEEEEETTTCC-------------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             eeccccceEEEEeecccc-------------cceeeeecccccccccccccccceEEEeecccccccccccccccceecc
Confidence            764  6789999987653             56677889999999999  33 357889999999999999887766654


Q ss_pred             ----ccccEEEEe--ec-CCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEe---CCCCEEEEEcCCCcEEEE
Q 009373          291 ----HSDWVYGLA--PH-DTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARS---HTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       291 ----~~~~v~~~~--~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~---~~~~~l~tg~~dg~i~iw  359 (536)
                          +...|.+++  |+ +.++++++ |+.|++||+++++.+..+. +|...+.++.|+   |+|++|++++.|+.|+||
T Consensus       200 ~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iw  278 (325)
T d1pgua1         200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIFALSWLDSQKFATVGADATIRVW  278 (325)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEE
T ss_pred             cccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc-ccccccccceeeeeccCCCEEEEEeCCCeEEEE
Confidence                677788887  54 67888777 9999999999999999886 577766655555   689999999999999999


Q ss_pred             EcccCccccccceeeeccCCCCC--eE--EEEEcC-CeEEEEeCCCcEEEEEC
Q 009373          360 EIINDCTEANVLLVATWIPHTGP--VN--SLAFEF-PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~--v~--~l~~~~-~~l~s~s~dg~i~vwd~  407 (536)
                      |++++      .++..+..|...  +.  ++.+.+ .+|++++.||.|++||+
T Consensus       279 d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         279 DVTTS------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ETTTT------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ECCCC------CEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            99988      556655555443  33  344444 68999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.5e-29  Score=241.21  Aligned_cols=259  Identities=16%  Similarity=0.098  Sum_probs=178.8

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce------eeeeCCCCceEE------EEe---cCCCEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS------IASSKPLGCTIR------AVA---ADKKLLV  214 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~------~~~~~~~~~~v~------~~~---~~~~~l~  214 (536)
                      .....++|.+.|++++++  +++++|||.|++|+|||..+...      ......|...+.      ...   .+..+++
T Consensus         6 ~~~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EEEESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             eeecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            356778999999999986  57999999999999999866532      122223332221      122   2345788


Q ss_pred             EEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e-----CCEEEEEecCCeEEEEeCCCce---
Q 009373          215 AGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-----LTRIYSGSWDMTVRVWDRALLK---  284 (536)
Q Consensus       215 sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-----~~~l~s~s~dg~i~iwd~~~~~---  284 (536)
                      +++.||.|++|++............   .........+...+..+++  +     +.++++++.||++++||+....   
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeecc---ccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            9999999999998654321100000   0000011124455666666  2     3578999999999999974221   


Q ss_pred             ------------EeEeee----ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc-----cccccceEEEEE
Q 009373          285 ------------CLKVLR----HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN-----GAHVGNTKSLAR  340 (536)
Q Consensus       285 ------------~~~~~~----~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-----~~~~~~i~~l~~  340 (536)
                                  ......    +...+.+++  |++ ++++++ |++|++||+.+++++..+.     .+|...|++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                        111111    444566666  555 777887 8999999999998877654     258899999999


Q ss_pred             eCCCCEEEEEcCCCc---EEEEEcccCccccc-------cceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          341 SHTGDFLFTGGEDGA---IHMYEIINDCTEAN-------VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       341 ~~~~~~l~tg~~dg~---i~iwd~~~~~~~~~-------~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      +|+|++|++|+.|++   |++||+.++.....       ......+.+|.+.|++++|+|  ++|++|+.|++|+|||++
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            999999999999875   99999988732211       122334468999999999987  699999999999999999


Q ss_pred             cccccC
Q 009373          409 KLLRSG  414 (536)
Q Consensus       409 ~~~~~~  414 (536)
                      ++....
T Consensus       320 ~g~~~~  325 (393)
T d1sq9a_         320 TKERIT  325 (393)
T ss_dssp             TTEEEE
T ss_pred             CCCEEE
Confidence            865443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.4e-28  Score=230.21  Aligned_cols=275  Identities=17%  Similarity=0.212  Sum_probs=200.9

Q ss_pred             CceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEe-eCCccCEEEEEE-eCCE
Q 009373          190 GFSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL-DLTR  265 (536)
Q Consensus       190 ~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~-~~~~  265 (536)
                      |+..+.+++|...|.+++  |++++|++|+.||+|++||+.++.             ....+ .+|...|.+++| ..+.
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-------------~~~~~~~~h~~~v~~v~~~~~g~   68 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-------------SNRVFPDVHATMITGIKTTSKGD   68 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------EEECSSCSCSSCEEEEEECTTSC
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-------------EEEEEcCCCCCcEEEEEeeccce
Confidence            566788999999997775  899999999999999999997763             22233 468999999999 3346


Q ss_pred             EEEEecCCeEEEEeCCCceEeE----eeeccccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEE
Q 009373          266 IYSGSWDMTVRVWDRALLKCLK----VLRHSDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLA  339 (536)
Q Consensus       266 l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~  339 (536)
                      +++++.|+.+++|+........    ...+...+.++.  +++.+++++.++.+.+|+...  .....   ....+.+++
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~---~~~~~~~~~  143 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP---ISYNSSCVA  143 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE---CSSCEEEEE
T ss_pred             eecccceeeEEEeccCCcccccccccccccccccccccccccccccccccccccccccccc--ccccc---ccccccccc
Confidence            7888899999999986543211    112555666655  888998888899999999543  22222   445678999


Q ss_pred             EeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCC
Q 009373          340 RSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPT  417 (536)
Q Consensus       340 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~  417 (536)
                      |+|++++|++|+.||.|++||+++...     .......|...|++++|+|  .+|++++.|+.|++||+.+.....   
T Consensus       144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---  215 (299)
T d1nr0a2         144 LSNDKQFVAVGGQDSKVHVYKLSGASV-----SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA---  215 (299)
T ss_dssp             ECTTSCEEEEEETTSEEEEEEEETTEE-----EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES---
T ss_pred             ccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccccc---
Confidence            999999999999999999999987731     1223457899999999986  799999999999999998743221   


Q ss_pred             CCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhcc
Q 009373          418 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQT  495 (536)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (536)
                                   ....+.+|...|.++++++  .+|++|+.||.|++||+.++........        ..........
T Consensus       216 -------------~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~v~~  274 (299)
T d1nr0a2         216 -------------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK--------GAHAMSSVNS  274 (299)
T ss_dssp             -------------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET--------TSSTTSCEEE
T ss_pred             -------------ccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEe--------cCCCCCcEEE
Confidence                         1123456777888777655  4999999999999999987653221110        0011112233


Q ss_pred             ccccCCCCcceeEeec
Q 009373          496 EMSSKGGRTDQCSVAA  511 (536)
Q Consensus       496 ~~~~~g~~~~~~~~~~  511 (536)
                      .++++|+.+++++.+.
T Consensus       275 ~~~~~~~~l~s~s~D~  290 (299)
T d1nr0a2         275 VIWLNETTIVSAGQDS  290 (299)
T ss_dssp             EEEEETTEEEEEETTS
T ss_pred             EEECCCCEEEEEeCCC
Confidence            4556788888877543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.2e-28  Score=234.59  Aligned_cols=295  Identities=14%  Similarity=0.193  Sum_probs=197.2

Q ss_pred             eeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE---------eCC
Q 009373          194 ASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL---------DLT  264 (536)
Q Consensus       194 ~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---------~~~  264 (536)
                      ...++|...|.+++..++++++|+.|++|++||..+....       ...........|...+..+..         +..
T Consensus         8 ~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE-------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC   80 (393)
T ss_dssp             EESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC-------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred             ecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCC-------cccceeEeeeeccCCceEeeeEeeeccCCCCCc
Confidence            3457899999999988999999999999999998665321       011122333345544433332         224


Q ss_pred             EEEEEecCCeEEEEeCCCceEeEee--------e---ccccEEEEe--e-----cCCEEEEec-CCcEEEEeCCCCc---
Q 009373          265 RIYSGSWDMTVRVWDRALLKCLKVL--------R---HSDWVYGLA--P-----HDTTVASTS-GSDVYIWDTNSGC---  322 (536)
Q Consensus       265 ~l~s~s~dg~i~iwd~~~~~~~~~~--------~---~~~~v~~~~--~-----~~~~l~~~~-d~~i~i~d~~~~~---  322 (536)
                      .+++++.||.|++|++........+        .   +...+..+.  +     .+.++++++ |+.+++||+....   
T Consensus        81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            6789999999999987543221111        1   333344443  2     245667666 9999999975321   


Q ss_pred             ------------EEEEE--ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEE
Q 009373          323 ------------LLTVV--NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF  388 (536)
Q Consensus       323 ------------~~~~~--~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  388 (536)
                                  .....  ...+...+++++|+|++ +|++|+.||+|++||+.++...........+.+|..+|++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                        01111  12345568899999987 8999999999999999988554444555667889999999999


Q ss_pred             cC--CeEEEEeCCCc---EEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeE
Q 009373          389 EF--PWLVSAAGDGK---LSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIV  461 (536)
Q Consensus       389 ~~--~~l~s~s~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i  461 (536)
                      +|  .+|++|+.|++   |++||++++..........      ........+.+|...|.+++++++  +|+|||.||+|
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~------~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v  313 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL  313 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeecccc------ccccceeeeecccCceeeeccCCCCCeeEEECCCCEE
Confidence            87  69999999874   9999998754332211110      112333456789999999988665  99999999999


Q ss_pred             EEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeE
Q 009373          462 RIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCS  508 (536)
Q Consensus       462 ~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  508 (536)
                      ++||+.+++.+..+.    ++.  ...+.....++++|+|..+++..
T Consensus       314 ~vWd~~~g~~~~~l~----gH~--~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         314 RFWDVKTKERITTLN----MHC--DDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEETTTTEEEEEEE----CCG--GGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EEEECCCCCEEEEEC----CcC--CcccCCccEEEECCCCCEEEEcc
Confidence            999999997765432    211  11123345688999999988653

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9.7e-26  Score=213.57  Aligned_cols=293  Identities=10%  Similarity=0.052  Sum_probs=201.1

Q ss_pred             ceeeeeCCCCceEEEEe--cCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e-CCE
Q 009373          191 FSIASSKPLGCTIRAVA--ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTR  265 (536)
Q Consensus       191 ~~~~~~~~~~~~v~~~~--~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~  265 (536)
                      +.+...++|...|.++.  |++++|++|+.||+|++||+.++..          ........+|.++|.+++|  + +..
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~----------~~~~~~~~~h~~~V~~v~f~~~~~~~   71 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK----------NVDLLQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT----------EEEEEEEEECSSCEEEEEEEESSSEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc----------ceEEEEecCCCCCEEEEEEeCCCCCE
Confidence            34556678888887665  8999999999999999999976531          1233344579999999999  2 347


Q ss_pred             EEEEecCCeEEEEeCCCceEeEeee-cc-cc--EEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEc---cc--cccce
Q 009373          266 IYSGSWDMTVRVWDRALLKCLKVLR-HS-DW--VYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN---GA--HVGNT  335 (536)
Q Consensus       266 l~s~s~dg~i~iwd~~~~~~~~~~~-~~-~~--v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~---~~--~~~~i  335 (536)
                      |++|+.||+|++|+........... +. ..  .....+++..+++++ ++.+++||++.+.......   ..  .....
T Consensus        72 l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             EEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccccee
Confidence            9999999999999998877666655 22 22  222236777777777 8999999987653322221   11  22244


Q ss_pred             EEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEEeCCCcEEEEECCcccc
Q 009373          336 KSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSAAGDGKLSLIDVRKLLR  412 (536)
Q Consensus       336 ~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~  412 (536)
                      ....+.+.+..+++++.||.|++||++.....   ........+...+.+..+.+   ..+++++.||.+.+|++.....
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD---NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTC---CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             eeeeeeccCCceeeecCCCcEEEEecccCccc---ceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence            56677888999999999999999999877432   22233344555666666643   7899999999999999876543


Q ss_pred             cCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--CEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHh
Q 009373          413 SGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRR  490 (536)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (536)
                      ..........    ..........+|...+.++++++  .+|+|||.||.|++||+.+++.+......           .
T Consensus       229 ~~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-----------~  293 (342)
T d1yfqa_         229 DYNSSKRFAF----RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-----------N  293 (342)
T ss_dssp             STTCTTCEEE----ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-----------S
T ss_pred             eeecccccee----eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-----------C
Confidence            3322211111    11111122345556666666655  59999999999999999988765432211           1


Q ss_pred             hhhccccccCCCCcceeEeec
Q 009373          491 RKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       491 ~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      ....++++|+|..+++++.+.
T Consensus       294 ~~~~~~~s~~~~~l~~a~sdd  314 (342)
T d1yfqa_         294 EDSVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             SSEEEEEEECSSEEEEEEECT
T ss_pred             CCEEEEEEeCCCEEEEEEcCC
Confidence            234688999999999877654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.8e-24  Score=198.38  Aligned_cols=229  Identities=15%  Similarity=0.141  Sum_probs=178.4

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      ...+|+..|.+++++++ ..+++++.|++|++|++.+.+     ..+.....++.+++..+++ +.++.+.+|+..++. 
T Consensus        41 ~~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-  112 (287)
T d1pgua2          41 MHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHE-----FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGD-  112 (287)
T ss_dssp             EECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEE-----CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCC-
T ss_pred             CCCCCCCCEEEEEecCC-CeEEEEeeccccccccccccc-----cccceeeeeeccCCceEEE-eecccceeeecccee-
Confidence            34689999999999875 568999999999999975432     1222334445566655555 556678888876642 


Q ss_pred             ceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCC-eEEEEeCCCceEeEeee--ccccEEEEe--ecCCEEEE
Q 009373          233 HLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDM-TVRVWDRALLKCLKVLR--HSDWVYGLA--PHDTTVAS  307 (536)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~  307 (536)
                                  ....+ .+...+.++..+++.+++++.|+ .+++|++...+....+.  +...+.+++  |++.+|++
T Consensus       113 ------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  179 (287)
T d1pgua2         113 ------------IIKSV-RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA  179 (287)
T ss_dssp             ------------EEEEE-ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred             ------------eeeec-cccceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc
Confidence                        22222 34456777888888888887775 79999998776655554  677788776  88999999


Q ss_pred             ec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCC----------CCEEEEEcCCCcEEEEEcccCccccccceeeec
Q 009373          308 TS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT----------GDFLFTGGEDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       308 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~----------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                      ++ ++.|++||+.+++.......+|...|.+++|+|.          +.+|++|+.|+.|++||++.+.     ..+..+
T Consensus       180 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~-----~~~~~~  254 (287)
T d1pgua2         180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-----KIIKAL  254 (287)
T ss_dssp             EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-----CCEEET
T ss_pred             ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC-----eEEEEe
Confidence            88 8999999999998877655679999999999875          4689999999999999997753     467778


Q ss_pred             cCCCCCeEEEEEcC-CeEEEEeCCCcEEEEEC
Q 009373          377 IPHTGPVNSLAFEF-PWLVSAAGDGKLSLIDV  407 (536)
Q Consensus       377 ~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~  407 (536)
                      .+|.+.|++++|++ ..|++++.||.|++||+
T Consensus       255 ~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         255 NAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            89999999999976 68999999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=3.7e-24  Score=204.90  Aligned_cols=268  Identities=10%  Similarity=0.046  Sum_probs=193.8

Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEE--EEecCCCEEEEEeCCC--cEEEEEcccCccceecc
Q 009373          163 TVFVLA-SAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIR--AVAADKKLLVAGGTDG--FIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       163 ~v~~~~-~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~  237 (536)
                      .-.||| ||+++|+++ +|.|++||++++..++.  +|...+.  +++|||+.|++++.+.  .|++||++++       
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-------   76 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-------   76 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-------
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-------
Confidence            457999 999999987 47999999998887765  4555554  4559999998877653  7999999776       


Q ss_pred             cCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEEEec---
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVASTS---  309 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~~~~---  309 (536)
                             ....+..|.+.|.+++|  ++++|++++.++.+++|+..+++....+. +...+.+++  |++++|+.+.   
T Consensus        77 -------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          77 -------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             -------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             -------cEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeecccc
Confidence                   34457789999999999  78899999999999999999999888777 555665554  8999988643   


Q ss_pred             --------CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc----c-------
Q 009373          310 --------GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN----V-------  370 (536)
Q Consensus       310 --------d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~----~-------  370 (536)
                              ++.+++||+.+++.....  .+...+..+.|+|+|++|++++.++.+.+||.........    .       
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  227 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP  227 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred             ccceeeccccceeeeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc
Confidence                    235899999998776554  3677888999999999999999999999998643211000    0       


Q ss_pred             --------------------------ceeeeccCCCCCeEEEEEcC---------------CeEEEEeCCCcEEEEECCc
Q 009373          371 --------------------------LLVATWIPHTGPVNSLAFEF---------------PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       371 --------------------------~~~~~~~~h~~~v~~l~~~~---------------~~l~s~s~dg~i~vwd~~~  409 (536)
                                                ..+..+....+....+...+               .++++++.++.|++||+.+
T Consensus       228 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~  307 (360)
T d1k32a3         228 GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT  307 (360)
T ss_dssp             TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTT
T ss_pred             CccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCC
Confidence                                      00000111111222222211               2456677788999999876


Q ss_pred             ccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEE--ecCCEEEEecCCCeEEEEeCCchhhH
Q 009373          410 LLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVD--IGADRIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      .+                       ...+...+.+++  +++++|++++.||.|++||+++++..
T Consensus       308 ~~-----------------------~~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         308 RK-----------------------VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             CC-----------------------EEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred             Ce-----------------------EEEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence            31                       112223344444  55569999999999999999988654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=2.9e-21  Score=184.54  Aligned_cols=277  Identities=13%  Similarity=0.059  Sum_probs=195.8

Q ss_pred             EEEEec-CCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC--eEEE
Q 009373          203 IRAVAA-DKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM--TVRV  277 (536)
Q Consensus       203 v~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg--~i~i  277 (536)
                      ...|+| ||+++++++ +|.|++||+.++.              ...+ +|...|.+++|  +++.|++++.+.  .|++
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~--------------~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v   70 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTY--------------VLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGI   70 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSB--------------EEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCc--------------EEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence            467898 899999876 5799999987652              2233 69999999999  778888776554  7999


Q ss_pred             EeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc---
Q 009373          278 WDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---  351 (536)
Q Consensus       278 wd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~---  351 (536)
                      ||..+++......|...+.+++  |+++++++++ ++.+++|++.+++....+. .|...+.+++|+|+|++|+.++   
T Consensus        71 ~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~la~~~~~~  149 (360)
T d1k32a3          71 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLK  149 (360)
T ss_dssp             EETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred             EECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeee-cccccccchhhccceeeeeeecccc
Confidence            9999988877777888888776  8999999988 8999999999999888775 5888999999999999998653   


Q ss_pred             -------CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCC---
Q 009373          352 -------EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSG---  419 (536)
Q Consensus       352 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~---  419 (536)
                             .++.+++||+.++      . ...+..|...+..++|+|  ++|++++.|+.+.+||.............   
T Consensus       150 ~~~~~~~~~~~~~v~d~~~~------~-~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~  222 (360)
T d1k32a3         150 HGETDGYVMQAIHVYDMEGR------K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV  222 (360)
T ss_dssp             SSTTCSCCEEEEEEEETTTT------E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEE
T ss_pred             ccceeeccccceeeeccccC------c-eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEE
Confidence                   3456999999877      2 334456777888999976  79999999999999997543221110000   


Q ss_pred             -----------------Cce-----------eeEEee---CCCeeeeccccccEEEEEecC--C---EEEEecCCCeEEE
Q 009373          420 -----------------KRV-----------SRVIEV---EPPQRMLHGFECNLLSVDIGA--D---RIVCGGEEGIVRI  463 (536)
Q Consensus       420 -----------------~~~-----------~~~~~~---~~~~~~~~~~~~~v~~~~~~~--~---~l~sg~~Dg~i~v  463 (536)
                                       ...           ..+..+   ......+..+...+..+....  .   ++++++.++.|++
T Consensus       223 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred             EecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEE
Confidence                             000           000000   000111122222222222211  1   6788889999999


Q ss_pred             EeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeecccCCcC
Q 009373          464 WNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAAKKNPMN  517 (536)
Q Consensus       464 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  517 (536)
                      ||+.+++...              .......++|+|||++|++++-+...+.++
T Consensus       303 ~d~~~~~~~~--------------~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         303 YDVKTRKVTE--------------VKNNLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EETTTCCEEE--------------EEEEEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EECCCCeEEE--------------ecCCcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            9998764311              112356899999999999987776655544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=7.3e-21  Score=186.51  Aligned_cols=313  Identities=13%  Similarity=0.037  Sum_probs=198.8

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      +-++++++.||+|+|||+.+++.+.++..+.. ...+++|||+++++++.||+|++||+.++....        ...+..
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~--------~~~i~~  103 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--------VAEIKI  103 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--------EEEEEC
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE--------EEEEeC
Confidence            33668889999999999999999999976644 336778999999999999999999998864211        001122


Q ss_pred             eeCCccCEEEEEE--eCCEE-EEEecCCeEEEEeCCCceEeEeee-ccc-----------cEEEEe--ecCCEEEEec--
Q 009373          249 LWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLR-HSD-----------WVYGLA--PHDTTVASTS--  309 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~-~~~-----------~v~~~~--~~~~~l~~~~--  309 (536)
                      ..+|.+.+.+++|  |++++ +++..++++++||..++.+...+. +..           ....+.  +++..++...  
T Consensus       104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence            2345566666666  77876 555689999999999998877665 222           112222  4555554443  


Q ss_pred             CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCccccccceeeecc--CCCCCeEEE
Q 009373          310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTEANVLLVATWI--PHTGPVNSL  386 (536)
Q Consensus       310 d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~~~~~~~~~--~h~~~v~~l  386 (536)
                      .+.+.+++............++...+..+.++|++++++++. .+..+.+++..+..      .+....  .+......+
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR------LSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE------EEEEEECSSCCCCSCCE
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc------EEEEeccCCccccccee
Confidence            355666666655433322224777899999999999877765 45678999998873      322222  222222233


Q ss_pred             EEc--C-C--eEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEE------
Q 009373          387 AFE--F-P--WLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIV------  453 (536)
Q Consensus       387 ~~~--~-~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~------  453 (536)
                      .+.  . .  ..++.+.|+.+.+|+........  ..          ......+.+|...+..+.++++  +|+      
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~--~~----------~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~  325 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--YA----------WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN  325 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTT--TB----------TSEEEEEECSSSCCCCEECCTTCSEEEECCTTC
T ss_pred             eeecCCCCceEEeccCCCceEEEeecccccccc--cc----------ceEeEEEecCCCceeEEEcCCCCceEEEeecCC
Confidence            332  2 2  33344568899999876532111  00          1223456677776666665554  777      


Q ss_pred             -EecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEe
Q 009373          454 -CGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSV  509 (536)
Q Consensus       454 -sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  509 (536)
                       +++.|++|+|||+.+++...+.........+ ....++..+++|||||+++....+
T Consensus       326 ~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~-~~~~~rv~~~~fSpDGk~i~vs~~  381 (426)
T d1hzua2         326 PDARISQSVAVFDLKNLDAKYQVLPIAEWADL-GEGAKRVVQPEYNKRGDEVWFSVW  381 (426)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEECHHHHHCC-CSSCCCEEEEEECSSSSEEEEEEC
T ss_pred             CCcccCCEEEEEECCCCCcCeEEeccchhccc-CCCCccEEEEEECCCCCEEEEEEe
Confidence             4667899999999998765432111110000 112345678899999998865433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=4.2e-19  Score=164.74  Aligned_cols=261  Identities=12%  Similarity=0.057  Sum_probs=185.1

Q ss_pred             EEEEeCCCcEEEEECCCCceeeeeCCCCc-eEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccceEEee
Q 009373          173 LFTSGYDSIVRMWHLEDGFSIASSKPLGC-TIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLW  250 (536)
Q Consensus       173 l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  250 (536)
                      .++++.|++|.+||+++++.+.++..... .-.+++|+|++| ++++.++.|.+||+.++.             ....+.
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~-------------~~~~~~   71 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------VIATVP   71 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------EEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-------------eeeeee
Confidence            45678899999999999999988865433 346778999977 567789999999997753             444555


Q ss_pred             CCccCEEEEEE--eCC-EEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCcE
Q 009373          251 EHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCL  323 (536)
Q Consensus       251 ~h~~~v~~l~~--~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~  323 (536)
                      .+. .+..+.+  ++. .++++..++.+.+|+..+++....+.+.....++.  +++..++.+.  +..+.+|+..++..
T Consensus        72 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~  150 (301)
T d1l0qa2          72 AGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (301)
T ss_dssp             CSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccc-cccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence            554 4577888  555 45566778899999999999998888655555544  8888776554  68899999999998


Q ss_pred             EEEEccccccceEEEEEeCCCCEEEEEcCC-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEe---
Q 009373          324 LTVVNGAHVGNTKSLARSHTGDFLFTGGED-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAA---  397 (536)
Q Consensus       324 ~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s---  397 (536)
                      ...+.  +...+..+.++|++..+++++.+ +.+.+|+....      ....... ....+..+++++  ..++.++   
T Consensus       151 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         151 INTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSEEEEEEECTTSSEEEEEEECS
T ss_pred             eeecc--cCCCceEEEeeccccceeeecccccccccccccce------eeeeccc-ccCCcceeeccccccccccccccc
Confidence            88875  55668899999999988777665 55667776655      3333333 334567788865  5555443   


Q ss_pred             CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEE-EEecCCCeEEEEeCCchhhHHH
Q 009373          398 GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRI-VCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       398 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      .++.|++||+.+.......                  ..+....-.++++++++| ++++.|+.|++||+.+++.+.+
T Consensus       222 ~~~~v~v~D~~t~~~~~~~------------------~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~  281 (301)
T d1l0qa2         222 YFNTVSMIDTGTNKITARI------------------PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITAT  281 (301)
T ss_dssp             SCCEEEEEETTTTEEEEEE------------------ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eeeeeeeeecCCCeEEEEE------------------cCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence            3478999999875322110                  011112223444556655 7888999999999999876643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=3.9e-20  Score=181.04  Aligned_cols=317  Identities=12%  Similarity=0.013  Sum_probs=198.7

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCC-ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEE
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      .-++++.+.||+|.|||..+++.+..+..+. ..-.+++|||+++++++.||+|.+||+.++....        ...+..
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~--------~~~i~~  103 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--------VAEIKI  103 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--------EEEEEC
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE--------EEEEec
Confidence            3356899999999999999999999996654 3456778999999999999999999998764211        011222


Q ss_pred             eeCCccCEEEEEE--eCCEE-EEEecCCeEEEEeCCCceEeEeee------------ccccEEEE--eecCCEEEEe-c-
Q 009373          249 LWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLR------------HSDWVYGL--APHDTTVAST-S-  309 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~------------~~~~v~~~--~~~~~~l~~~-~-  309 (536)
                      ..+|.+.+.+..|  ||++| ++++.+++|++||..+++.+..+.            +......+  ++++..++.+ . 
T Consensus       104 ~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~  183 (432)
T d1qksa2         104 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  183 (432)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc
Confidence            2345555666666  77875 788899999999999999887664            22233333  3677765544 4 


Q ss_pred             CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccccceeeeccCCCCCeEEEEE
Q 009373          310 GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAF  388 (536)
Q Consensus       310 d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~  388 (536)
                      ++.|.+||..+++........+...+..++|+|+|+++++++. ++.+.++|..+...... ........|........+
T Consensus       184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~-~~~g~~~~~~~~~~~~~~  262 (432)
T d1qksa2         184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI-EDTGGQTPHPGRGANFVH  262 (432)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE-EECSSSSBCCTTCEEEEE
T ss_pred             CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE-eccCccccccCcccceec
Confidence            6899999999887654433346677899999999998776665 56788999877632111 011111223333444444


Q ss_pred             cC--CeEEEE-eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCee---------------eecccc--ccEEEEEec
Q 009373          389 EF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQR---------------MLHGFE--CNLLSVDIG  448 (536)
Q Consensus       389 ~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~--~~v~~~~~~  448 (536)
                      ..  ...++. ..|+.|.+|+.........  ..+....+........               .+..|.  ....++ ++
T Consensus       263 ~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~--~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pD  339 (432)
T d1qksa2         263 PTFGPVWATSHMGDDSVALIGTDPEGHPDN--AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FD  339 (432)
T ss_dssp             TTTEEEEEEEBSSSSEEEEEECCTTTCTTT--BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EE
T ss_pred             CCCCceecccccCCceEEeccccccccccc--ccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Ee
Confidence            32  222222 2477888887654321110  0011111110000000               011111  112233 78


Q ss_pred             CCEEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCcceeEeec
Q 009373          449 ADRIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       449 ~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      +..+++++.|+.+++|++.++..+.      +       ...+..+++|||||+++.+..++.
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~~l~------~-------~~~~v~~~~fS~DG~~v~~S~~~~  389 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWAGIT------E-------GQPRVVQGEFNKDGTEVWFSVWNG  389 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHHTCC------S-------SCCEEEEEEECTTSSEEEEEEECC
T ss_pred             chhhcccccCCceEecccccccccC------C-------CCCcEEEeEECCCCCEEEEEEecC
Confidence            8899999999999999875442111      1       123456899999999998776653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=1.4e-19  Score=176.94  Aligned_cols=221  Identities=14%  Similarity=0.045  Sum_probs=142.1

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCce--eeee---CCCCceEEE--EecCCCE
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFS--IASS---KPLGCTIRA--VAADKKL  212 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~--~~~~---~~~~~~v~~--~~~~~~~  212 (536)
                      ...+.......+..+..| ..+..++|+|||+++++++.|++|++||+.+++.  ...+   ..|...+.+  ++|||++
T Consensus        44 v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~  122 (432)
T d1qksa2          44 IALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY  122 (432)
T ss_dssp             EEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred             EEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCE
Confidence            344455555667888877 4699999999999999999999999999988763  2333   233333433  3479997


Q ss_pred             E-EEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCE-EEEEecCCeEEEEeCCCceEeE-
Q 009373          213 L-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTR-IYSGSWDMTVRVWDRALLKCLK-  287 (536)
Q Consensus       213 l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~-l~s~s~dg~i~iwd~~~~~~~~-  287 (536)
                      | ++++.+++|++||..++............. . .....+.+....+.+  ++.. +++...++.|.+||..+.+... 
T Consensus       123 l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~-~-~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~  200 (432)
T d1qksa2         123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-D-EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT  200 (432)
T ss_dssp             EEEEEEETTEEEEEETTTCCEEEEEECCEECT-T-TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             EEEEcCCCCeEEEEeCccccceeeeccCCccc-c-ceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE
Confidence            5 778889999999998875321111000000 0 011134555667777  5554 5667788999999998877554 


Q ss_pred             -eeeccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCcEEEEEccc----cccceEEEEEeCCCCEEEEEc-CCCcEE
Q 009373          288 -VLRHSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGA----HVGNTKSLARSHTGDFLFTGG-EDGAIH  357 (536)
Q Consensus       288 -~~~~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~tg~-~dg~i~  357 (536)
                       .+.+...+..+.  |+++++++++  ++.+.++|..+++....+..+    |........+...+...++.. .++.|.
T Consensus       201 ~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~  280 (432)
T d1qksa2         201 TEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVA  280 (432)
T ss_dssp             EEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             EEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEE
Confidence             344555555554  9999877776  578999999998887766422    223333333433333333332 256677


Q ss_pred             EEEccc
Q 009373          358 MYEIIN  363 (536)
Q Consensus       358 iwd~~~  363 (536)
                      +|+...
T Consensus       281 ~~~~~~  286 (432)
T d1qksa2         281 LIGTDP  286 (432)
T ss_dssp             EEECCT
T ss_pred             eccccc
Confidence            776544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=4e-19  Score=173.94  Aligned_cols=309  Identities=10%  Similarity=-0.008  Sum_probs=194.5

Q ss_pred             hhccccCCccceeeeeCccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceee--ee---CCCCceEEEE--ecCCCE
Q 009373          140 FRSKTFLGRYSIDVLYGHTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIA--SS---KPLGCTIRAV--AADKKL  212 (536)
Q Consensus       140 ~~~~~~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~--~~---~~~~~~v~~~--~~~~~~  212 (536)
                      .+.+.......+.++..|. .+..++|+|||++|++++.|++|++||+.+++...  .+   .+|...+.+.  +|||++
T Consensus        44 v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~  122 (426)
T d1hzua2          44 IALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY  122 (426)
T ss_dssp             EEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE
T ss_pred             EEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE
Confidence            4445555556678888874 58999999999999999999999999999987543  22   2333444433  378998


Q ss_pred             EEE-EeCCCcEEEEEcccCccceecccCcccccceEEeeCC-----------ccCEEEEEE--eCCEEEE-EecCCeEEE
Q 009373          213 LVA-GGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH-----------EGPITSLAL--DLTRIYS-GSWDMTVRV  277 (536)
Q Consensus       213 l~s-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h-----------~~~v~~l~~--~~~~l~s-~s~dg~i~i  277 (536)
                      +++ +..++.+.+||..++..             ......|           .+....+..  ++..++. ....+.+.+
T Consensus       123 l~v~~~~~~~v~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~  189 (426)
T d1hzua2         123 TIAGAYWPPQFAIMDGETLEP-------------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL  189 (426)
T ss_dssp             EEEEEEESSEEEEEETTTCCE-------------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             EEEeecCCCeEEEEcCCccce-------------eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            654 55889999999987642             2222223           233333333  3333333 333455555


Q ss_pred             EeCCCceE--eEeeeccccEEEEe--ecCCEEEEec--CCcEEEEeCCCCcEEEEEccc-cccceEEEEEeCCCC---EE
Q 009373          278 WDRALLKC--LKVLRHSDWVYGLA--PHDTTVASTS--GSDVYIWDTNSGCLLTVVNGA-HVGNTKSLARSHTGD---FL  347 (536)
Q Consensus       278 wd~~~~~~--~~~~~~~~~v~~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~-~~~~i~~l~~~~~~~---~l  347 (536)
                      ++......  ...+.+...+..+.  +++++++++.  +..+.+++..+++.+.....+ +........+.+.+.   ..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence            55554432  22334556666655  7888877776  577999999999988776532 122222333333332   22


Q ss_pred             EEEcCCCcEEEEEcccCccc-cccceeeeccCCCCCeEEEEEcC--CeEEE-------EeCCCcEEEEECCcccccCCCC
Q 009373          348 FTGGEDGAIHMYEIINDCTE-ANVLLVATWIPHTGPVNSLAFEF--PWLVS-------AAGDGKLSLIDVRKLLRSGRPT  417 (536)
Q Consensus       348 ~tg~~dg~i~iwd~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-------~s~dg~i~vwd~~~~~~~~~~~  417 (536)
                      ++.+.|+.+.+|+....... ........+.+|...+..++|+|  .+|++       ++.|++|+|||++++.......
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~  349 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  349 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEe
Confidence            34456788888887654221 12256677889999999999988  57773       4568899999998864332110


Q ss_pred             CCCceeeEEeeCCCeeeeccccccEEEEEecC--CEE-EEe----cCCCeEEEEeCCchhhH
Q 009373          418 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--DRI-VCG----GEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~sg----~~Dg~i~vW~~~~~~~~  472 (536)
                      .         ... ...+..+...++++.|++  +++ +++    +.||.|+|||..+.++.
T Consensus       350 ~---------~~~-~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         350 P---------IAE-WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             C---------HHH-HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             c---------cch-hcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            0         000 011223455677666655  444 443    57899999999998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.2e-18  Score=164.41  Aligned_cols=266  Identities=11%  Similarity=-0.030  Sum_probs=178.6

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeeeeCCC----CceEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccCcccccc
Q 009373          171 KLLFTSGYDSIVRMWHLEDGFSIASSKPL----GCTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISGSEKQNT  245 (536)
Q Consensus       171 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  245 (536)
                      +++++++.|++|+|||+++++.+..+..+    .....+++|||+++ ++++.++.|.+||+.+++             .
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~-------------~   68 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-------------T   68 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-------------E
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc-------------E
Confidence            58999999999999999999999887432    23456788999987 567789999999998864             2


Q ss_pred             eEEeeCCc-----cCEEEEEE--eCCEEEEEe------------cCCeEEEEeCCCceEeEeeeccccEEEE--eecCCE
Q 009373          246 QFRLWEHE-----GPITSLAL--DLTRIYSGS------------WDMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTT  304 (536)
Q Consensus       246 ~~~~~~h~-----~~v~~l~~--~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~  304 (536)
                      ...+..+.     ..+..+++  ++++++++.            .+..+.+||..+++....+.....+..+  .+++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  148 (337)
T d1pbyb_          69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK  148 (337)
T ss_dssp             EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSC
T ss_pred             EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCE
Confidence            22222222     22334566  566776655            4678999999999999888866555544  489998


Q ss_pred             EEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCC------------------------CCEEEEEcCCCcEEEEE
Q 009373          305 VASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHT------------------------GDFLFTGGEDGAIHMYE  360 (536)
Q Consensus       305 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~------------------------~~~l~tg~~dg~i~iwd  360 (536)
                      +++++ +.+.+||..+++....+.. +. ......+.|+                        ......+..++.+.+||
T Consensus       149 l~~~~-~~~~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (337)
T d1pbyb_         149 LYGLG-RDLHVMDPEAGTLVEDKPI-QS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             EEEES-SSEEEEETTTTEEEEEECS-TT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             EEEEc-CCcceeeeecCcEEEEeec-CC-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence            88875 5578899999988877642 11 1111111221                        11122223345688888


Q ss_pred             cccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccc
Q 009373          361 IINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFEC  440 (536)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (536)
                      ..++.     .....+.++...+..+++++......+.++.|++||+.+......                  ...++..
T Consensus       226 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~------------------~~~~~~~  282 (337)
T d1pbyb_         226 LETGE-----MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR------------------VPLPHSY  282 (337)
T ss_dssp             TTTCC-----EEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEE------------------EECSSCC
T ss_pred             cCCCc-----EEEEEecCCCcceEEEEecccceEEEEccccEEEEECCCCcEEEE------------------EcCCCCE
Confidence            87763     223344567778888888874322333468999999988532211                  1123333


Q ss_pred             cEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHH
Q 009373          441 NLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       441 ~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~  475 (536)
                      ...++++++++|++++.||.|++||..+++.+.+.
T Consensus       283 ~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i  317 (337)
T d1pbyb_         283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             CEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence            44556667779999999999999999998766543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.79  E-value=7e-19  Score=166.57  Aligned_cols=276  Identities=13%  Similarity=0.030  Sum_probs=177.6

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-CC--ceEEEEecCCCEE-EEEeCCCcEEEEEcccCccceecccC
Q 009373          164 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-LG--CTIRAVAADKKLL-VAGGTDGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       164 v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~--~~v~~~~~~~~~l-~sg~~dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      ++|++++++|++++.|++|.+||+.+++.+.++.. +.  ..-.+++|||+++ ++++.++.|.+||+.+++.... ...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~-~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH-ANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee-ecc
Confidence            46889999999999999999999999999987752 32  3367788999977 5566789999999987642110 000


Q ss_pred             cccccceEEeeCCccCEEEEEE--eCCEEEEEe------------cCCeEEEEeCCCceEeEeee---ccccEEEE--ee
Q 009373          240 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS------------WDMTVRVWDRALLKCLKVLR---HSDWVYGL--AP  300 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~---~~~~v~~~--~~  300 (536)
                      ...      ...+...+..+++  +++++++++            .++.+.+||..+++....+.   ....+..+  .+
T Consensus        81 ~~~------~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T d1jmxb_          81 SSV------PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD  154 (346)
T ss_dssp             CCS------TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred             ccc------ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC
Confidence            000      0001122345666  667776554            47789999988877655443   22223322  35


Q ss_pred             cCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCE--------------------------EEEEcCCC
Q 009373          301 HDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF--------------------------LFTGGEDG  354 (536)
Q Consensus       301 ~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~--------------------------l~tg~~dg  354 (536)
                      ++.+++.  ++.+.+||+.+++.+..+..  ......+.++|++..                          ++++..++
T Consensus       155 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (346)
T d1jmxb_         155 DGSLYVA--GPDIYKMDVKTGKYTVALPL--RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY  230 (346)
T ss_dssp             TSCEEEE--SSSEEEECTTTCCEEEEECS--TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred             CCEEEEe--CCcceEEEccCCCEEEEEec--CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence            5555543  35689999999998887742  222333344444432                          23333445


Q ss_pred             cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCe
Q 009373          355 AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQ  432 (536)
Q Consensus       355 ~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (536)
                      .+.+||..++.     .......+|...+.++.+++  .+++.+. ++.|.+||..+.+...                  
T Consensus       231 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~------------------  286 (346)
T d1jmxb_         231 GYLSVDLKTGK-----THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIK------------------  286 (346)
T ss_dssp             EEEEEETTTCC-----EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEE------------------
T ss_pred             eEEEEECCCCc-----eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEE------------------
Confidence            56777766652     22334556777888888865  4555544 4579999998753221                  


Q ss_pred             eeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHH
Q 009373          433 RMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       433 ~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                      ....++.....++++++++|++++.||.|++||..+++.+.+
T Consensus       287 ~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         287 AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             EEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            111234444556667777999999999999999999877654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.79  E-value=1.3e-16  Score=147.70  Aligned_cols=238  Identities=14%  Similarity=0.083  Sum_probs=176.5

Q ss_pred             ceeeeeCccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCCCCce-EEEEecCCCEE-EEEeCCCcEEEEE
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT-IRAVAADKKLL-VAGGTDGFIHCWR  226 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~l-~sg~~dg~i~vwd  226 (536)
                      .++++... ..+..++|+|+|++| ++++.++.|++||+.+++.+..+..+..+ -..+.+++..+ +++..++.+.+|+
T Consensus        24 ~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (301)
T d1l0qa2          24 VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVID  102 (301)
T ss_dssp             EEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecc
Confidence            34555543 457899999999977 56778999999999999999888766543 34556777754 5566778899999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEE-EEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ec
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRI-YSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PH  301 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~  301 (536)
                      ..++.             ....+ .+.....++.+  ++..+ +++..++.+.+|+..+.+....+.+...+..+.  ++
T Consensus       103 ~~~~~-------------~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (301)
T d1l0qa2         103 TTSNT-------------VAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (301)
T ss_dssp             TTTTE-------------EEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             cccce-------------eeeec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecc
Confidence            87652             23333 34456677777  56655 566678999999999999998888666666655  77


Q ss_pred             CCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEc---CCCcEEEEEcccCccccccceeeec
Q 009373          302 DTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG---EDGAIHMYEIINDCTEANVLLVATW  376 (536)
Q Consensus       302 ~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~~~~~  376 (536)
                      +..++++.  ++.+.+|+....+......  ....+..+++++++..+++++   .++.|++||+.++      +.+..+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~------~~~~~~  240 (301)
T d1l0qa2         169 GTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN------KITARI  240 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT------EEEEEE
T ss_pred             ccceeeecccccccccccccceeeeeccc--ccCCcceeeccccccccccccccceeeeeeeeecCCC------eEEEEE
Confidence            77776665  4678888888887777664  456678899999999877654   3468999999888      445554


Q ss_pred             cCCCCCeEEEEEcC--CeE-EEEeCCCcEEEEECCccc
Q 009373          377 IPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       377 ~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~  411 (536)
                      .. ...+.+++|+|  ++| ++++.|+.|++||+++++
T Consensus       241 ~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         241 PV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT  277 (301)
T ss_dssp             EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             cC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCe
Confidence            43 45679999987  565 577789999999998864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=5.6e-16  Score=145.60  Aligned_cols=239  Identities=13%  Similarity=0.050  Sum_probs=169.2

Q ss_pred             cceeeeeC--ccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCCCCce-------EEEEecCCCEEEEEeC
Q 009373          149 YSIDVLYG--HTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLGCT-------IRAVAADKKLLVAGGT  218 (536)
Q Consensus       149 ~~~~~l~~--h~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~~~-------v~~~~~~~~~l~sg~~  218 (536)
                      ..+.++..  +...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+...       -.+++|+++.++++..
T Consensus        22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeec
Confidence            34566654  44567899999999987 56778999999999999998877654322       3567799999888764


Q ss_pred             ------------CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCce
Q 009373          219 ------------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLK  284 (536)
Q Consensus       219 ------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~  284 (536)
                                  ++.+.+||..++.             ....+. +...+..+++  ++.++++++.  .+.+||..+++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~-------------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~  165 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLS-------------RRKAFE-APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGT  165 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTE-------------EEEEEE-CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTE
T ss_pred             CCcceeeeccccccceeeccccCCe-------------EEEecc-ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCc
Confidence                        5667777776542             222332 3455677788  7788888764  47789999998


Q ss_pred             EeEeeeccccE--EEEeecC----------CE--------------EEEec-CCcEEEEeCCCCcEEEEEccccccceEE
Q 009373          285 CLKVLRHSDWV--YGLAPHD----------TT--------------VASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKS  337 (536)
Q Consensus       285 ~~~~~~~~~~v--~~~~~~~----------~~--------------l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~  337 (536)
                      ....+......  ....+++          ..              ..... ++.+.+||..++.........+...+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (337)
T d1pbyb_         166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS  245 (337)
T ss_dssp             EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE
Confidence            88776521110  0001111          10              01111 3459999999988766544457778889


Q ss_pred             EEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccc
Q 009373          338 LARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLR  412 (536)
Q Consensus       338 l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~  412 (536)
                      +.++|++.+++.+  ++.|++||+.++      ..+..+ .+...+.+++|+|  ++|++++.|+.|+|||.++++.
T Consensus       246 ~~~~~~~~~~~~~--~~~i~v~d~~~~------~~~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         246 TAVNPAKTRAFGA--YNVLESFDLEKN------ASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             EEECTTSSEEEEE--ESEEEEEETTTT------EEEEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             EEecccceEEEEc--cccEEEEECCCC------cEEEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            9999999988776  588999999988      444444 3566789999986  7999999999999999998643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.69  E-value=6.7e-14  Score=133.51  Aligned_cols=286  Identities=10%  Similarity=-0.020  Sum_probs=182.0

Q ss_pred             eeeCccccEEEEEEecCCCEEEEE-----eCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTS-----GYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------  217 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sg-----s~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------  217 (536)
                      ...+|..++.+++++|+|+.++..     +.++.|.+||..+++.+.++..+..+-..++|||++|++++          
T Consensus        15 a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          15 AAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             hcccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCcccccc
Confidence            445788999999999999988764     23567999999999999999888777788999999998875          


Q ss_pred             CCCcEEEEEcccCccceecccCcccccceEEeeCCccCE-------EEEEE--eCCEEEEE--ecCCeEEEEeCCCceEe
Q 009373          218 TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI-------TSLAL--DLTRIYSG--SWDMTVRVWDRALLKCL  286 (536)
Q Consensus       218 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-------~~l~~--~~~~l~s~--s~dg~i~iwd~~~~~~~  286 (536)
                      .++.|.+||..+++             ....+..+....       ..+.+  +++.++..  ..++.+.+|+..+.+..
T Consensus        95 ~~~~v~v~D~~t~~-------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  161 (373)
T d2madh_          95 RTDYVEVFDPVTFL-------------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD  161 (373)
T ss_pred             cceEEEEEECCCCc-------------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE
Confidence            45789999998764             222222232222       22333  55554443  34567888888776655


Q ss_pred             EeeeccccEEEEeecCCEE-EEec-CCcEEEEeCCCCcEEEEEcc-----ccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          287 KVLRHSDWVYGLAPHDTTV-ASTS-GSDVYIWDTNSGCLLTVVNG-----AHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       287 ~~~~~~~~v~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      ...... ....+.++++.+ ++.+ |+.+.+||...++.......     +.......+.+++++. ++..+.++.+.+|
T Consensus       162 ~~~~~~-~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~  239 (373)
T d2madh_         162 QLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQA  239 (373)
T ss_pred             EEeccc-eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEE
Confidence            444321 122345777654 4444 89999999998877665532     1122234455566554 4556678899999


Q ss_pred             EcccCccccccceeeeccCCCCC----------eEEEEEc------------CCeEEEEeCCCcEEEEECCcccccCCCC
Q 009373          360 EIINDCTEANVLLVATWIPHTGP----------VNSLAFE------------FPWLVSAAGDGKLSLIDVRKLLRSGRPT  417 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~~------------~~~l~s~s~dg~i~vwd~~~~~~~~~~~  417 (536)
                      +......    ........+...          ...++++            ...+++...++.+.+||..++.....  
T Consensus       240 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~--  313 (373)
T d2madh_         240 DISAAGA----TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ--  313 (373)
T ss_pred             EcCCCeE----EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEE--
Confidence            9876532    111111111111          1112221            24556667778899999887532211  


Q ss_pred             CCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHH
Q 009373          418 SGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERR  475 (536)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~  475 (536)
                                      ...++...-+.++++++  ++++++.|+.|++||+.+++++...
T Consensus       314 ----------------~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         314 ----------------ISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             ----------------ecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence                            11223333345555666  4578999999999999999877544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=1.7e-15  Score=143.76  Aligned_cols=279  Identities=12%  Similarity=0.021  Sum_probs=173.7

Q ss_pred             EEEEEEecCCCEEEEEe-----CCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEE----------eCCCcEEEE
Q 009373          161 VLTVFVLASAKLLFTSG-----YDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAG----------GTDGFIHCW  225 (536)
Q Consensus       161 V~~v~~~~~~~~l~sgs-----~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg----------~~dg~i~vw  225 (536)
                      +.-.+.+||++.++...     .++.|.+||..+++.+.++..+..+..+++|||++|++.          ..|+.|.+|
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence            33345689999887653     456799999999999999887777778999999988764          457899999


Q ss_pred             EcccCccceecccCcccccceEEeeCC-------ccCEEEEEE--eCCEEEEEe--cCCeEEEEeCCCceEeEeeecccc
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEH-------EGPITSLAL--DLTRIYSGS--WDMTVRVWDRALLKCLKVLRHSDW  294 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~--~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~  294 (536)
                      |+.++...             ..+..+       ......++|  +++.++.++  .+..+.+||..+++....+.....
T Consensus        84 D~~t~~~~-------------~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (355)
T d2bbkh_          84 DPVTLLPT-------------ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC  150 (355)
T ss_dssp             CTTTCCEE-------------EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE
T ss_pred             ECCCCCEE-------------EEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc
Confidence            99886421             111111       112234556  677766654  567899999999998888774333


Q ss_pred             EEEEe-ecCCEEEEecCCcEEEEeCCCCcEEEEEc-----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          295 VYGLA-PHDTTVASTSGSDVYIWDTNSGCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       295 v~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                      ..... .....++.+.|+...++............     ..+...+....+.+++..++.++.++.+++|++..+..  
T Consensus       151 ~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--  228 (355)
T d2bbkh_         151 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA--  228 (355)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC--
T ss_pred             ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE--
Confidence            32222 22233333445555554443332222221     12334455667888888999999999999999987632  


Q ss_pred             ccceeeeccCC----------CCCeEEEEEcC--CeEEEEeCC----------CcEEEEECCcccccCCCCCCCceeeEE
Q 009373          369 NVLLVATWIPH----------TGPVNSLAFEF--PWLVSAAGD----------GKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       369 ~~~~~~~~~~h----------~~~v~~l~~~~--~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                        ..+.....+          ......+++++  ..++..+.+          ..|.+||..+.+...            
T Consensus       229 --~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~------------  294 (355)
T d2bbkh_         229 --KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA------------  294 (355)
T ss_dssp             --EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE------------
T ss_pred             --EEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEE------------
Confidence              111111111          11223355543  455544433          368899988742211            


Q ss_pred             eeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHH
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                            ....++....+.++++++  ++++++.|+.|++||..+++.+.+
T Consensus       295 ------~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~  338 (355)
T d2bbkh_         295 ------KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  338 (355)
T ss_dssp             ------EEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             ------EecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE
Confidence                  111222233445556665  567888999999999999987654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.66  E-value=2.9e-15  Score=141.19  Aligned_cols=244  Identities=12%  Similarity=-0.011  Sum_probs=164.9

Q ss_pred             cceeeee-CccccEEEEEEecCCCEE-EEEeCCCcEEEEECCCCceeeeeCCCC--------ceEEEEecCCCEEEEEe-
Q 009373          149 YSIDVLY-GHTEAVLTVFVLASAKLL-FTSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAADKKLLVAGG-  217 (536)
Q Consensus       149 ~~~~~l~-~h~~~V~~v~~~~~~~~l-~sgs~dg~v~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~l~sg~-  217 (536)
                      ..++++. .|...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+....        ..-.++++||+++++++ 
T Consensus        29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            4566766 566778999999999976 566689999999999998887664321        12356779999888775 


Q ss_pred             -----------CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceE
Q 009373          218 -----------TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKC  285 (536)
Q Consensus       218 -----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~  285 (536)
                                 .++.+.+|+..++..          ....... .....+..+.+ ++..++..+  +.+.+||..+++.
T Consensus       109 ~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  175 (346)
T d1jmxb_         109 PTQRLNDHYVVKPPRLEVFSTADGLE----------AKPVRTF-PMPRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKY  175 (346)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGGGGG----------BCCSEEE-ECCSSCCCEEECTTSCEEEES--SSEEEECTTTCCE
T ss_pred             CCcceeeeeccCcceEEEEeccccee----------eeEEEee-eccCceEEEEecCCCEEEEeC--CcceEEEccCCCE
Confidence                       467788888766531          1111111 11223444444 334444433  5689999999888


Q ss_pred             eEeeeccccEEEE--eecC--------------------------CEEEEec-CCcEEEEeCCCCcEEEEEccccccceE
Q 009373          286 LKVLRHSDWVYGL--APHD--------------------------TTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTK  336 (536)
Q Consensus       286 ~~~~~~~~~v~~~--~~~~--------------------------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~  336 (536)
                      ...+........+  .+++                          ..++++. +..+.+||..++........++...+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (346)
T d1jmxb_         176 TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF  255 (346)
T ss_dssp             EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             EEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeE
Confidence            7776522211111  1111                          1122222 456889999998877666556888899


Q ss_pred             EEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCccccc
Q 009373          337 SLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRS  413 (536)
Q Consensus       337 ~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  413 (536)
                      .+.+++++.+++.+. ++.|.+||..++      +.+..+. +...+.+++|+|  .+|++++.||.|++||+++.+..
T Consensus       256 ~~~~~~~~~~~~~~~-~~~v~v~d~~~~------~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         256 TGLRSPKDPNQIYGV-LNRLAKYDLKQR------KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEEECSSCTTEEEEE-ESEEEEEETTTT------EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEEeCCCCEEEEec-CCeEEEEECCCC------cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            999999988887765 457999999888      4444443 445789999986  79999999999999999986433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.1e-13  Score=126.42  Aligned_cols=272  Identities=10%  Similarity=0.081  Sum_probs=164.8

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeee--CCCCc--eEEEEecCCCEEEEEe-CCCcEEEEEcccCccceecccCcccccce
Q 009373          172 LLFTSGYDSIVRMWHLEDGFSIASS--KPLGC--TIRAVAADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQ  246 (536)
Q Consensus       172 ~l~sgs~dg~v~iwd~~~~~~~~~~--~~~~~--~v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  246 (536)
                      .+++++.|++|++|++.+...+..+  ..+..  .-++++|||++|++++ .|+.|.+|++......          ...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~----------~~~   75 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA----------LTF   75 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC----------EEE
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc----------EEE
Confidence            4678889999999999765332222  23333  3457789999886555 5899999998764311          111


Q ss_pred             EEeeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeCCCceEeEeee---ccccEEE--EeecCCEEEEec--CCcEEEE
Q 009373          247 FRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALLKCLKVLR---HSDWVYG--LAPHDTTVASTS--GSDVYIW  316 (536)
Q Consensus       247 ~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~---~~~~v~~--~~~~~~~l~~~~--d~~i~i~  316 (536)
                      .....+...+..+++  ++++|++++. ++.|.+|+...........   +...+.+  ++++++.++.+.  +..+.+|
T Consensus        76 ~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~  155 (333)
T d1ri6a_          76 AAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLF  155 (333)
T ss_dssp             EEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEE
T ss_pred             eeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEE
Confidence            122234455667888  7788888874 7789999887666544433   4444544  458899888777  5779999


Q ss_pred             eCCCCcEEEEE-----ccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCcccccc-ceeee---ccCCCCCeEEE
Q 009373          317 DTNSGCLLTVV-----NGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANV-LLVAT---WIPHTGPVNSL  386 (536)
Q Consensus       317 d~~~~~~~~~~-----~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~-~~~~~---~~~h~~~v~~l  386 (536)
                      +..........     ..........++|++++.+++.. ...+...+++.......... ..+..   ..........+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (333)
T d1ri6a_         156 TVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  235 (333)
T ss_dssp             EECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             EeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence            98776433221     12344567889999999877655 45677888887554211100 01111   11233455667


Q ss_pred             EEcC--Ce-EEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEE-ecCCCeEE
Q 009373          387 AFEF--PW-LVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVC-GGEEGIVR  462 (536)
Q Consensus       387 ~~~~--~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s-g~~Dg~i~  462 (536)
                      ++++  ++ ++++..++.+.+|++........         ...     ....+....-+++++++++|++ ++.++.|+
T Consensus       236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~p~~~a~spDGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         236 HITPDGRHLYACDRTASLITVFSVSEDGSVLS---------KEG-----FQPTETQPRGFNVDHSGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSCCEE---------EEE-----EEECSSSCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             EEecccCceeeecccCCeEEEEEEcCCCCEEE---------EEE-----EeCCCCCeeEEEEeCCCCEEEEEECCCCeEE
Confidence            7765  44 44556678999999875311100         000     0001111223466777886554 55679999


Q ss_pred             EEeCC
Q 009373          463 IWNFS  467 (536)
Q Consensus       463 vW~~~  467 (536)
                      +|+++
T Consensus       302 v~~id  306 (333)
T d1ri6a_         302 VYEIV  306 (333)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99664

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=4.8e-16  Score=117.61  Aligned_cols=88  Identities=20%  Similarity=0.210  Sum_probs=67.9

Q ss_pred             ccccccccccccccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHhCCCCCCCCCC---CCCCCC
Q 009373           52 CNDVLSNLHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERWGLPIASAPLG---AGFSDD  128 (536)
Q Consensus        52 ~~~~~~~~~~~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~~~~~~~~~~~---~~~~~~  128 (536)
                      ...+.|.+++|+|+.||+||+.+||+|||+.||+++++|||+|+.++.++.+|+.+|.+.|..........   ......
T Consensus         7 ~~~~~p~~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~   86 (102)
T d2ovrb1           7 MQVIEPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIH   86 (102)
T ss_dssp             HHHHCCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCC
T ss_pred             HHHcCchhccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCC
Confidence            34567899999999999999999999999999999999999999999999999997665553222211111   112234


Q ss_pred             CCchhhhhhhh
Q 009373          129 KSWKELFVERE  139 (536)
Q Consensus       129 ~~Wk~~~~~~~  139 (536)
                      ..||..|..+.
T Consensus        87 ~~WK~~Y~~~~   97 (102)
T d2ovrb1          87 SPWKSAYIRQH   97 (102)
T ss_dssp             CHHHHHHHHHH
T ss_pred             cCHHHHHHHHH
Confidence            56999998765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.56  E-value=6.2e-12  Score=119.54  Aligned_cols=237  Identities=10%  Similarity=-0.088  Sum_probs=155.1

Q ss_pred             ceeeeeCccccEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeeeCCCCceEE---------EEecCC
Q 009373          150 SIDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPLGCTIR---------AVAADK  210 (536)
Q Consensus       150 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~~~~v~---------~~~~~~  210 (536)
                      .+.++.++..+  .++|+|||++|++++          .++.|.+||+.+++.+..+..+.....         .+++++
T Consensus        59 ~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  136 (373)
T d2madh_          59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC
Confidence            45667666654  689999999999875          467899999999999888766655443         445666


Q ss_pred             CEEEEEe--CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCCeEEEEeCCCceE
Q 009373          211 KLLVAGG--TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDMTVRVWDRALLKC  285 (536)
Q Consensus       211 ~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg~i~iwd~~~~~~  285 (536)
                      +.++...  .++.+.+|+..+..                 ...+.....++.+  +++ .+++.+.|+.+.+||...++.
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~  199 (373)
T d2madh_         137 ADLLFFQFAAGPAVGLVVQGGSS-----------------DDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             CcEEEEEEcCCCceEEeeccCCe-----------------EEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence            6544443  34566666654331                 1223334455666  444 567899999999999998877


Q ss_pred             eEeee-c------cccEEEEe--ecCCEEEEecCCcEEEEeCCCCcEEEEEc-ccc----------ccceEEEEEeCCCC
Q 009373          286 LKVLR-H------SDWVYGLA--PHDTTVASTSGSDVYIWDTNSGCLLTVVN-GAH----------VGNTKSLARSHTGD  345 (536)
Q Consensus       286 ~~~~~-~------~~~v~~~~--~~~~~l~~~~d~~i~i~d~~~~~~~~~~~-~~~----------~~~i~~l~~~~~~~  345 (536)
                      ..... +      ......+.  .++.+++.+.++.+.+|+...+....... ..+          ......+++++++.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  279 (373)
T d2madh_         200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             eEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC
Confidence            76554 1      11112222  44555655668999999988775432221 011          12233455666555


Q ss_pred             E----------EEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C--eEEEEeCCCcEEEEECCccc
Q 009373          346 F----------LFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P--WLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       346 ~----------l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~  411 (536)
                      .          +++...++.+.+||..++      ..+..+ .+...+.+++|+|  +  ++++++.|+.|+|||+.+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~v~~~d~~t~------~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~  352 (373)
T d2madh_         280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVG------QTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             eEEEecCCCceEEeecCCCeEEEEECCCC------cEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence            4          345566778999999888      445444 4667789999986  3  45688899999999999864


Q ss_pred             c
Q 009373          412 R  412 (536)
Q Consensus       412 ~  412 (536)
                      .
T Consensus       353 ~  353 (373)
T d2madh_         353 Q  353 (373)
T ss_pred             E
Confidence            3

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2.4e-13  Score=127.16  Aligned_cols=271  Identities=10%  Similarity=0.065  Sum_probs=164.8

Q ss_pred             EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCceEeEe
Q 009373          212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~~~~~~  288 (536)
                      .+++++.|++|++|++....           .........|.+.+..++|  |+++|++++ .|+.|++|++........
T Consensus         6 v~v~~~~~~~I~v~~~~~~~-----------~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~   74 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG-----------ALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT   74 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS-----------CEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEECCCCCcEEEEEEcCCC-----------CeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence            45788899999999986532           1123334468889999999  778885554 589999999876543322


Q ss_pred             e----eccccEEE--EeecCCEEEEec--CCcEEEEeCCCCcEEEEEc-cccccceEEEEEeCCCCEEEEEcC-CCcEEE
Q 009373          289 L----RHSDWVYG--LAPHDTTVASTS--GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGE-DGAIHM  358 (536)
Q Consensus       289 ~----~~~~~v~~--~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~i  358 (536)
                      +    .....+..  ++|+|+++++++  ++.+.+|+........... ..+...+.++.++|+++++++++. +..|.+
T Consensus        75 ~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~  154 (333)
T d1ri6a_          75 FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICL  154 (333)
T ss_dssp             EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEE
T ss_pred             EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeE
Confidence            2    23333444  559999888876  5789999887765544332 236667889999999998777764 566999


Q ss_pred             EEcccCccccccceeeeccCCCCCeEEEEEcC--CeEE-EEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeee
Q 009373          359 YEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV-SAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRML  435 (536)
Q Consensus       359 wd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (536)
                      |+.........................++|++  .+++ +....+...+|+.........     ...........  ..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~~--~~  227 (333)
T d1ri6a_         155 FTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE-----CVQTLDMMPEN--FS  227 (333)
T ss_dssp             EEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE-----EEEEEECSCTT--CC
T ss_pred             EEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee-----eeeeeeeeecC--CC
Confidence            99876532211111122234456678899975  4444 444567788888754321110     00000000000  00


Q ss_pred             ccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhHHHHHHhhhcccchhHHHhhhhccccccCCCCccee
Q 009373          436 HGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEIERRARALRGIRLENRMRRRKLQTEMSSKGGRTDQC  507 (536)
Q Consensus       436 ~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  507 (536)
                      .........++++++ .++++..++.+.+|++..............       ....+..++|+|||+.+.++
T Consensus       228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~a~spDGk~l~va  293 (333)
T d1ri6a_         228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP-------TETQPRGFNVDHSGKYLIAA  293 (333)
T ss_dssp             SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-------CSSSCCCEEECTTSSEEEEE
T ss_pred             ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC-------CCCCeeEEEEeCCCCEEEEE
Confidence            111122234555666 566777889999999986543322111110       11234578999999998765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.47  E-value=7e-12  Score=118.22  Aligned_cols=240  Identities=10%  Similarity=-0.002  Sum_probs=150.6

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEE----------eCCCcEEEEECCCCceeeeeCCCC---------ceEEEEecC
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTS----------GYDSIVRMWHLEDGFSIASSKPLG---------CTIRAVAAD  209 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sg----------s~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~  209 (536)
                      ..+.++..+..+  .++|+|||++|+++          +.|+.|++||+.+++.+..+..+.         .....++++
T Consensus        39 ~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  116 (355)
T d2bbkh_          39 RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD  116 (355)
T ss_dssp             EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred             cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecC
Confidence            345666655544  68999999988764          347899999999998877653221         223578899


Q ss_pred             CCEEEEEe--CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeE
Q 009373          210 KKLLVAGG--TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK  287 (536)
Q Consensus       210 ~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~  287 (536)
                      ++.+++++  .+..+.+|+..++.             ....+..+. ............++.+.|+...++.........
T Consensus       117 g~~~~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~  182 (355)
T d2bbkh_         117 GKTLLFYQFSPAPAVGVVDLEGKA-------------FKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE  182 (355)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTE-------------EEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             CCeeEEecCCCCceeeeeecCCCc-------------EeeEEecCC-cceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence            99887764  46789999987653             222222222 112222244555666667766666544433222


Q ss_pred             eee-------ccccEE--EEeecCCEEEEec-CCcEEEEeCCCCcEEEEEc-cc----------cccceEEEEEeCCCCE
Q 009373          288 VLR-------HSDWVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN-GA----------HVGNTKSLARSHTGDF  346 (536)
Q Consensus       288 ~~~-------~~~~v~--~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-~~----------~~~~i~~l~~~~~~~~  346 (536)
                      .+.       +...+.  ....++..++.++ ++.+++|++..++....-. ..          .......+++++++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~  262 (355)
T d2bbkh_         183 ITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  262 (355)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             EEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCe
Confidence            221       111121  2334555555555 8999999998876432110 01          1123345788999988


Q ss_pred             EEEEcCC----------CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C--eEEEEeCCCcEEEEECCccc
Q 009373          347 LFTGGED----------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P--WLVSAAGDGKLSLIDVRKLL  411 (536)
Q Consensus       347 l~tg~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~  411 (536)
                      ++....+          ..|.+||..++      +.+..+. +...+.+++|+|  +  ++++++.|+.|+|||+++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~------~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTG------ERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTC------CEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCC------cEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            7776543          36999999988      4444443 345688999987  3  45667779999999999863

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.7e-14  Score=83.88  Aligned_cols=40  Identities=43%  Similarity=0.543  Sum_probs=38.8

Q ss_pred             cCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhh
Q 009373           65 TDLPPALISEILNCLDPKELGIVSCVSPILHRLASDHHAW  104 (536)
Q Consensus        65 ~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW  104 (536)
                      ..||+|++.+||+||+++||+++++|||+|++++.++.+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5799999999999999999999999999999999999998

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=9.6e-14  Score=103.74  Aligned_cols=53  Identities=25%  Similarity=0.347  Sum_probs=48.4

Q ss_pred             cccccccCCcHHHHHHHhcCCChhhHHHHhhhhHHHHHHh-cCChhhHHHHHhH
Q 009373           59 LHRSTITDLPPALISEILNCLDPKELGIVSCVSPILHRLA-SDHHAWKEFYCER  111 (536)
Q Consensus        59 ~~~~~l~~Lp~ei~~~I~~~L~~~~l~~~~~v~~~~~~l~-~~~~lW~~~~~~~  111 (536)
                      +++|||+.||+||+.+||+|||+.||+++++|||+|+.++ +++.+|+.++...
T Consensus         1 lk~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           1 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CCCCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CCCCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            4789999999999999999999999999999999999987 5678999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=9.8e-12  Score=118.09  Aligned_cols=281  Identities=7%  Similarity=-0.032  Sum_probs=167.7

Q ss_pred             ccccEEEEEEecCCCEEE---EEeCCCc--EEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEe----------CCCc
Q 009373          157 HTEAVLTVFVLASAKLLF---TSGYDSI--VRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGG----------TDGF  221 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~---sgs~dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~----------~dg~  221 (536)
                      +.++...++..++++...   +...+++  |.+||..+++.+.....+......++|||+.|++.+          .|+.
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCCcceECCCCCEEEEEcccCccccccccCCe
Confidence            444555556677777432   2344454  667799999999888877777888999999888754          4778


Q ss_pred             EEEEEcccCccceecccCcccccceEEeeCCc-------cCEEEEEE--eCCEEEEEe-cCCeEEEEeCCCceEeEeeec
Q 009373          222 IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHE-------GPITSLAL--DLTRIYSGS-WDMTVRVWDRALLKCLKVLRH  291 (536)
Q Consensus       222 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~l~~--~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~  291 (536)
                      |.+||..+++.             ...+..+.       .....++|  |+++++++. .++.+.+||+.+++....+..
T Consensus        98 v~v~D~~t~~~-------------~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~  164 (368)
T d1mdah_          98 VEVFDPVTFLP-------------IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS  164 (368)
T ss_dssp             EEEECTTTCCE-------------EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC
T ss_pred             EEEEECCCCcE-------------eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec
Confidence            99999987642             12221111       11124566  888887765 579999999999999888773


Q ss_pred             cccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEc-----cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCc
Q 009373          292 SDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVN-----GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       292 ~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      .............++..+ ||++.++++..........     ..+...+....+.+++..+.+.  .+.+.++++....
T Consensus       165 ~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~  242 (368)
T d1mdah_         165 ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAG  242 (368)
T ss_dssp             SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSC
T ss_pred             cCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCc
Confidence            322211223334444444 8888888887654332221     1234445566777777655543  4556777765542


Q ss_pred             cccccceeeeccCC----------CCCeEEEEEc--CCeEEEEeCC---------CcEEEEECCcccccCCCCCCCceee
Q 009373          366 TEANVLLVATWIPH----------TGPVNSLAFE--FPWLVSAAGD---------GKLSLIDVRKLLRSGRPTSGKRVSR  424 (536)
Q Consensus       366 ~~~~~~~~~~~~~h----------~~~v~~l~~~--~~~l~s~s~d---------g~i~vwd~~~~~~~~~~~~~~~~~~  424 (536)
                      ..    .+.....+          ......++++  +..++....+         ..|.+||..+++.....        
T Consensus       243 ~~----~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~--------  310 (368)
T d1mdah_         243 AT----MKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI--------  310 (368)
T ss_dssp             CE----EECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC--------
T ss_pred             eE----EEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEe--------
Confidence            11    11111110          1111234444  3454443322         35889998875332111        


Q ss_pred             EEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHH
Q 009373          425 VIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIER  474 (536)
Q Consensus       425 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~  474 (536)
                                -.++...-..++++++  .++++..|+.|++||..+++.+..
T Consensus       311 ----------~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         311 ----------SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             ----------EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             ----------cCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence                      1122233345566665  467888999999999999987654

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-13  Score=106.56  Aligned_cols=57  Identities=32%  Similarity=0.379  Sum_probs=52.5

Q ss_pred             ccccccccccCCcH----HHHHHHhcCCChhhHHHHhhhhHHHHHHhcCChhhHHHHHhHh
Q 009373           56 LSNLHRSTITDLPP----ALISEILNCLDPKELGIVSCVSPILHRLASDHHAWKEFYCERW  112 (536)
Q Consensus        56 ~~~~~~~~l~~Lp~----ei~~~I~~~L~~~~l~~~~~v~~~~~~l~~~~~lW~~~~~~~~  112 (536)
                      .+.+++|||+.||.    ||+++||+|||+.||+++++|||+|+.+++++.+|+.++...+
T Consensus         3 ~~~l~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~   63 (118)
T d1p22a1           3 AIMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (118)
T ss_dssp             CCCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHcccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence            35779999999995    9999999999999999999999999999999999999876655

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=1.1e-11  Score=117.29  Aligned_cols=314  Identities=13%  Similarity=0.000  Sum_probs=174.9

Q ss_pred             EEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeC
Q 009373          172 LLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWE  251 (536)
Q Consensus       172 ~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  251 (536)
                      .++||+.+|.|++|++.+++.++++..       ++|++... .|..+.+.+++..  .             ........
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpV-------fspd~~~g-~g~~~es~~vl~~--~-------------~~~~~gd~   69 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPV-------FNVDSATG-WGITNESKEILGG--D-------------QQYLNGDC   69 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECS-------SSBCTTTC-TTTSHHHHHHHCS--S-------------SCCSCCCB
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEe-------EcCCCCEE-EEECCccceEEec--c-------------cccccCcc
Confidence            366888999999999999999887742       34444321 1111111111100  0             00001122


Q ss_pred             CccCEEEE--EEeCCEEEEE-ecCCeEEEEeCCCceEeEeee--ccccEEEEe--ecCC--EEEEecCCcE---------
Q 009373          252 HEGPITSL--ALDLTRIYSG-SWDMTVRVWDRALLKCLKVLR--HSDWVYGLA--PHDT--TVASTSGSDV---------  313 (536)
Q Consensus       252 h~~~v~~l--~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~--~~~~--~l~~~~d~~i---------  313 (536)
                      |.......  ..||++|+.. ..+..|.++|+.++++...+.  ....+..+.  ++++  +++..++..+         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            33333333  3488887555 578899999999999888665  455565554  6777  4444444433         


Q ss_pred             ---------EEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC---------------cEEEEEcccC-----
Q 009373          314 ---------YIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------------AIHMYEIIND-----  364 (536)
Q Consensus       314 ---------~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---------------~i~iwd~~~~-----  364 (536)
                               ..+|..+.+...++.  -.+....+.++|+|+++++++.+.               .|.+.+....     
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             ccccccceEEeecCccceeeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                     558888888877774  345678899999999988877542               1222221100     


Q ss_pred             --cc-------------ccccceeeeccCCCCCeEEEEEcC--CeE-EEEeCCCcEEEEECCcccccCCCCCCCceeeEE
Q 009373          365 --CT-------------EANVLLVATWIPHTGPVNSLAFEF--PWL-VSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVI  426 (536)
Q Consensus       365 --~~-------------~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~  426 (536)
                        +.             ......+..+.... ....+.++|  .++ +++..+++|.|||+.+..+..............
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~  306 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVA  306 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEE
T ss_pred             CCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEe
Confidence              00             00001222333333 346678876  555 556779999999998765443222111000000


Q ss_pred             eeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhhHHHHHHhhhc----ccch-hHHHhhhhccccccCC
Q 009373          427 EVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFEIERRARALRG----IRLE-NRMRRRKLQTEMSSKG  501 (536)
Q Consensus       427 ~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~g  501 (536)
                      +..      .+-...-..++..+..+.|...|..|..|++........-.....-    ...+ ...........++|||
T Consensus       307 ~~~------~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG  380 (441)
T d1qnia2         307 EPE------LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG  380 (441)
T ss_dssp             CCB------CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred             ecc------cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence            000      0111111233444457889999999999999543211110000000    0001 2334456778999999


Q ss_pred             CCcceeEeecccCCcC
Q 009373          502 GRTDQCSVAAKKNPMN  517 (536)
Q Consensus       502 ~~~~~~~~~~~~~~~~  517 (536)
                      +.+++.+--++++.++
T Consensus       381 k~l~s~~k~s~dr~~~  396 (441)
T d1qnia2         381 KWLVVLSKFSKDRFLP  396 (441)
T ss_dssp             CEEEEEESCCGGGSCC
T ss_pred             cEEEecCccccccCcC
Confidence            9999987777777666

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.27  E-value=1.5e-10  Score=109.60  Aligned_cols=244  Identities=9%  Similarity=-0.087  Sum_probs=153.1

Q ss_pred             cceeeeeCccccEEEEEEecCCCEEEEEe----------CCCcEEEEECCCCceeeeeCCCC---------ceEEEEecC
Q 009373          149 YSIDVLYGHTEAVLTVFVLASAKLLFTSG----------YDSIVRMWHLEDGFSIASSKPLG---------CTIRAVAAD  209 (536)
Q Consensus       149 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs----------~dg~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~~  209 (536)
                      ..+..+.++..+  .++|+|||+.|++.+          .|++|.+||..+++.+..+..+.         ..-.+++||
T Consensus        57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD  134 (368)
T d1mdah_          57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence            345566666655  478999999888754          47889999999998887663221         123678999


Q ss_pred             CCEEEEEe-CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEe
Q 009373          210 KKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKV  288 (536)
Q Consensus       210 ~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  288 (536)
                      |++++++. .++.+.+||+.+++             ....+..+.... ........+++.+.||.+.+++.........
T Consensus       135 Gk~l~va~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~-~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~  200 (368)
T d1mdah_         135 SACLLFFLFGSSAAAGLSVPGAS-------------DDQLTKSASCFH-IHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTE-------------EEEEEECSSCCC-CEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCc-------------EeEEeeccCcce-EccCCCceEEEEcCCCCEEEEEecCCceeee
Confidence            99988776 57999999997753             222333332221 1122556778888999999998765543322


Q ss_pred             ee-------ccccEEEEeec-CCEEEEecCCcEEEEeCCCCcEEEEEcc-----------ccccceEEEEEeCCCCEEEE
Q 009373          289 LR-------HSDWVYGLAPH-DTTVASTSGSDVYIWDTNSGCLLTVVNG-----------AHVGNTKSLARSHTGDFLFT  349 (536)
Q Consensus       289 ~~-------~~~~v~~~~~~-~~~l~~~~d~~i~i~d~~~~~~~~~~~~-----------~~~~~i~~l~~~~~~~~l~t  349 (536)
                      ..       +...+....+. ....+...++.+.+++...+........           ........++++|++..++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v  280 (368)
T d1mdah_         201 IVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI  280 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             eeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEE
Confidence            21       12222223321 2233334456677777766544332210           01122345788999887766


Q ss_pred             EcCC---------CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-e-EEEEeCCCcEEEEECCcccccCC
Q 009373          350 GGED---------GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-W-LVSAAGDGKLSLIDVRKLLRSGR  415 (536)
Q Consensus       350 g~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~-l~s~s~dg~i~vwd~~~~~~~~~  415 (536)
                      ...+         ..|.+||..++      +.+..+. +...+.+++|+|  + + ++++..|+.|++||..+++....
T Consensus       281 ~~~~~~~~~~~~~~~v~v~D~~t~------~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~  352 (368)
T d1mdah_         281 LTVEHSRSCLAAAENTSSVTASVG------QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS  352 (368)
T ss_dssp             EEEECSSCTTSCEEEEEEEESSSC------CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred             EecCCCceeecCCceEEEEECCCC------cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            5332         35889999888      4444443 345788999986  3 3 45667789999999998754433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.10  E-value=3.3e-09  Score=103.82  Aligned_cols=130  Identities=10%  Similarity=0.078  Sum_probs=94.6

Q ss_pred             EEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCC-----CCc--eEEEEecCCCEEEEEeC---------CCcEEEEE
Q 009373          163 TVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKP-----LGC--TIRAVAADKKLLVAGGT---------DGFIHCWR  226 (536)
Q Consensus       163 ~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~-----~~~--~v~~~~~~~~~l~sg~~---------dg~i~vwd  226 (536)
                      .+.|.+++.++..  .|+.+.+||+.+++....+..     +..  .-..++||++.|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4668888887764  578899999999987665533     333  34567899999998753         57788999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee--ccc---------
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR--HSD---------  293 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~---------  293 (536)
                      +.++.              ...+..|.+.+....|  ||+.++.. .++.+.+|+..+++......  ...         
T Consensus        99 ~~~~~--------------~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~  163 (470)
T d2bgra1          99 LNKRQ--------------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDW  163 (470)
T ss_dssp             TTTTE--------------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCH
T ss_pred             CCCCc--------------ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccce
Confidence            98762              3346678888999999  88888885 57899999999887665432  111         


Q ss_pred             ----------cEEEEeecCCEEEEec
Q 009373          294 ----------WVYGLAPHDTTVASTS  309 (536)
Q Consensus       294 ----------~v~~~~~~~~~l~~~~  309 (536)
                                .....+|+|+.++...
T Consensus       164 ~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         164 VYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             HHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             eeeeeecCCccccEECCCCCccceeE
Confidence                      1123568999888876

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.02  E-value=1.8e-10  Score=108.99  Aligned_cols=283  Identities=9%  Similarity=-0.007  Sum_probs=158.1

Q ss_pred             eCccccEEEEEEecCCCEEEEE-eCCCcEEEEECCCCceeeeeC---CCCceEEEEecCCCE--EEEEeCCCc-------
Q 009373          155 YGHTEAVLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFSIASSK---PLGCTIRAVAADKKL--LVAGGTDGF-------  221 (536)
Q Consensus       155 ~~h~~~V~~v~~~~~~~~l~sg-s~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~--l~sg~~dg~-------  221 (536)
                      ..|..........|||++|+.. ..+++|.++|+.+++....+.   +....-.+++++++.  ++.++.+..       
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            3466666777788999988655 468899999999998877553   233334677788884  444443321       


Q ss_pred             ----------EEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCC-eEEEEeCCCceEeEe
Q 009373          222 ----------IHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDM-TVRVWDRALLKCLKV  288 (536)
Q Consensus       222 ----------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg-~i~iwd~~~~~~~~~  288 (536)
                                +..+|..+.             ....++.. .+....+.+  +++++++.+.+. .+..++..+.+....
T Consensus       148 ~~~~~~~~~~~~~iD~~t~-------------~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~  213 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETM-------------DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDW  213 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTC-------------SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCE
T ss_pred             ccccccccceEEeecCccc-------------eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEE
Confidence                      122333222             11122211 123445555  777777766553 333334333333222


Q ss_pred             eecc--ccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEE-EEcCCCcEEEEEcccCc
Q 009373          289 LRHS--DWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLF-TGGEDGAIHMYEIINDC  365 (536)
Q Consensus       289 ~~~~--~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-tg~~dg~i~iwd~~~~~  365 (536)
                      +...  .....+.++|+++..+.++.+.+++....+.+..+..  ......+.++|||++++ ++..+++|.+||+....
T Consensus       214 i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~  291 (441)
T d1qnia2         214 VVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV--PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD  291 (441)
T ss_dssp             EEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC--BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred             EEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC--CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence            2210  1111123788888777788888888887777777753  34467899999999865 56779999999987642


Q ss_pred             cc--cccceeeeccC---CCCCeEEEEEcC--CeEEEEeCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373          366 TE--ANVLLVATWIP---HTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  438 (536)
Q Consensus       366 ~~--~~~~~~~~~~~---h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (536)
                      ..  ........+.+   ..-.....+|++  ..+.+...|..|..|++....+.+.......+..-....    ...||
T Consensus       292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~----y~~GH  367 (441)
T d1qnia2         292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ----YQPGH  367 (441)
T ss_dssp             HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS----SCEEE
T ss_pred             hHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc----cCCCC
Confidence            10  00000111111   111234457876  456667789999999987543332222111111100000    11245


Q ss_pred             cccEEE--EEecCCEEEEecC
Q 009373          439 ECNLLS--VDIGADRIVCGGE  457 (536)
Q Consensus       439 ~~~v~~--~~~~~~~l~sg~~  457 (536)
                      ...+.+  ++++|++|++++.
T Consensus       368 ~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         368 NHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEETTTTSTTCCCCEEEEEES
T ss_pred             CccccccccCCCCcEEEecCc
Confidence            444433  4466779999943

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.98  E-value=1.7e-07  Score=85.29  Aligned_cols=225  Identities=9%  Similarity=-0.065  Sum_probs=145.1

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccC
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISG  239 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~  239 (536)
                      .+..++++|||+++++...+++|..|+.........-.......+++.++|+++++...++.+..++......       
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~-------  101 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-------  101 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-------
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc-------
Confidence            4778999999999999999999999986644333222333334456679999999998899998888754321       


Q ss_pred             cccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee-----------ccccEEEEeecCCEEE
Q 009373          240 SEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR-----------HSDWVYGLAPHDTTVA  306 (536)
Q Consensus       240 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~l~  306 (536)
                         ................+++  +++.+++.+.++.+..+|...+.......           .......+..++..++
T Consensus       102 ---~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~  178 (302)
T d2p4oa1         102 ---TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY  178 (302)
T ss_dssp             ---CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred             ---ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCcee
Confidence               0111111234456788888  56677777788889888888765433222           1123456666666555


Q ss_pred             Eec--CCcEEEEeCCCCcEEEEEc-cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCe
Q 009373          307 STS--GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPV  383 (536)
Q Consensus       307 ~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v  383 (536)
                      .+.  .+.|..++........... .........++++++|.+.++...++.|..++.....     ..+......-...
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~-----~~~~~~~~~~~~p  253 (302)
T d2p4oa1         179 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST-----TIIAQAEQGVIGS  253 (302)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE-----EEEECGGGTCTTE
T ss_pred             eecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCE-----EEEEecCCCCCCc
Confidence            544  6788888876543221110 0123345679999999988888889999999765441     2333344445567


Q ss_pred             EEEEEc---C--CeEEEEeCC
Q 009373          384 NSLAFE---F--PWLVSAAGD  399 (536)
Q Consensus       384 ~~l~~~---~--~~l~s~s~d  399 (536)
                      ++++|.   +  +.|+.++..
T Consensus       254 t~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         254 TAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEEECCSTTTTTEEEEEECT
T ss_pred             eEEEEcCCCCCCCEEEEECCC
Confidence            899994   2  456655443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.92  E-value=4.9e-08  Score=95.22  Aligned_cols=78  Identities=4%  Similarity=-0.070  Sum_probs=60.8

Q ss_pred             eeeCccccEEEEEEecCCCEEEEEeC---------CCcEEEEECCCCceeeeeCCCCce--EEEEecCCCEEEEEeCCCc
Q 009373          153 VLYGHTEAVLTVFVLASAKLLFTSGY---------DSIVRMWHLEDGFSIASSKPLGCT--IRAVAADKKLLVAGGTDGF  221 (536)
Q Consensus       153 ~l~~h~~~V~~v~~~~~~~~l~sgs~---------dg~v~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~l~sg~~dg~  221 (536)
                      .+..|...|.++.|+|||++|+.++.         ++.+.+||+++++. ..+..+...  ...++|||+.++.. .++.
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~  133 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNND  133 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-eccc
Confidence            55567789999999999999998753         57789999998864 445555544  45677999999985 5678


Q ss_pred             EEEEEcccCcc
Q 009373          222 IHCWRAVEVLP  232 (536)
Q Consensus       222 i~vwd~~~~~~  232 (536)
                      +.+|+..++..
T Consensus       134 l~~~~~~~g~~  144 (470)
T d2bgra1         134 IYVKIEPNLPS  144 (470)
T ss_dssp             EEEESSTTSCC
T ss_pred             ceEEECCCCce
Confidence            99999887753

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.78  E-value=1.5e-05  Score=71.02  Aligned_cols=227  Identities=13%  Similarity=0.114  Sum_probs=144.3

Q ss_pred             cEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCC--------ceEEEEecC-CCEEEE-EeCCCcEEEEEccc
Q 009373          160 AVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLG--------CTIRAVAAD-KKLLVA-GGTDGFIHCWRAVE  229 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~--------~~v~~~~~~-~~~l~s-g~~dg~i~vwd~~~  229 (536)
                      .-..|+++++++++++-..+..|++||.+ |+.+..+....        ..-.++..+ +..+++ .+.++.|..++...
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            45789999999988888888999999965 66665552211        111222333 333333 33445666665432


Q ss_pred             CccceecccCcccccceEEe-eCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeee---ccccEEEEe--ec
Q 009373          230 VLPHLFDISGSEKQNTQFRL-WEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLR---HSDWVYGLA--PH  301 (536)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~--~~  301 (536)
                      .              ....+ .........+++  ++..+++....+.+.+++.. ++.+..+.   +......+.  ++
T Consensus       103 ~--------------~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_         103 Q--------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             C--------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred             c--------------ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc
Confidence            1              11122 123345667777  45666666667778888864 55555554   334445444  67


Q ss_pred             CCEEEEec-CCcEEEEeCCCCcEEEEEc-cccccceEEEEEeCCCCEEEEEcC-CCcEEEEEcccCccccccceeeecc-
Q 009373          302 DTTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGE-DGAIHMYEIINDCTEANVLLVATWI-  377 (536)
Q Consensus       302 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~~~~~~-  377 (536)
                      ++++++.. .+.|++||.. ++.+..+. .+.......++++++|+++++-.. ++.|.+|+.. +      ..+.++. 
T Consensus       168 g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~-G------~~~~~~~~  239 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G------QLISALES  239 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S------CEEEEEEE
T ss_pred             eeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC-C------CEEEEEeC
Confidence            77777766 6899999974 56666663 234556889999999998777554 4579999843 3      2333332 


Q ss_pred             -CCCCCeEEEEEcC-CeEEEEeCCCcEEEEECCcc
Q 009373          378 -PHTGPVNSLAFEF-PWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       378 -~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~  410 (536)
                       ........|++++ ..|++++.+..|++|.....
T Consensus       240 ~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         240 KVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             CCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence             2234578888876 47777888999999998764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=9.6e-06  Score=71.53  Aligned_cols=228  Identities=10%  Similarity=-0.024  Sum_probs=133.5

Q ss_pred             cEEEEEEecCCCEEEEE-eCCCcEEEEECCCCceee-eeCCC-CceEEEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          160 AVLTVFVLASAKLLFTS-GYDSIVRMWHLEDGFSIA-SSKPL-GCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       160 ~V~~v~~~~~~~~l~sg-s~dg~v~iwd~~~~~~~~-~~~~~-~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      .-..|+++++|++.++. +..+.+..++........ ...+. ...-+++.++++++++....+.+++++-.+..     
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~-----   89 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-----   89 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-----
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce-----
Confidence            34799999999976665 445677777655433222 22222 22335677888887777666666655433221     


Q ss_pred             ccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEee-eccccEEEE--eecCCEEEEec-C
Q 009373          237 ISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGL--APHDTTVASTS-G  310 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~--~~~~~~l~~~~-d  310 (536)
                              ... .........++++  +++.+++-..+..+..++.......... .......++  .++++++++.. +
T Consensus        90 --------~~~-~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~  160 (260)
T d1rwia_          90 --------TVL-PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN  160 (260)
T ss_dssp             --------EEC-CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGG
T ss_pred             --------eee-eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccc
Confidence                    111 1122345678888  4566666556666777776543322211 111222344  47888777766 6


Q ss_pred             CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC
Q 009373          311 SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF  390 (536)
Q Consensus       311 ~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  390 (536)
                      +.|..+|........ +..........++++++|.++++....+.|..++.....      ........-....+|++++
T Consensus       161 ~~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~------~~~~~~~~~~~P~~i~~d~  233 (260)
T d1rwia_         161 NRVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT------STVLPFTGLNTPLAVAVDS  233 (260)
T ss_dssp             TEEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC------CEECCCCSCCCEEEEEECT
T ss_pred             ccccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe------EEEEccCCCCCeEEEEEeC
Confidence            889999987654433 322355677899999999998888888888888765441      1111122234568899975


Q ss_pred             --CeEEEEeCCCcEEEEECC
Q 009373          391 --PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       391 --~~l~s~s~dg~i~vwd~~  408 (536)
                        .++++-..++.|+.++..
T Consensus       234 ~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         234 DRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TCCEEEEEGGGTEEEEECCC
T ss_pred             CCCEEEEECCCCEEEEEeCC
Confidence              455554556666655543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.66  E-value=1.7e-05  Score=72.03  Aligned_cols=234  Identities=8%  Similarity=0.022  Sum_probs=137.9

Q ss_pred             ccEEEEEEecCCCEEEEEeC-------CCcEEEEECCCCceeeeeCCCC------ceEEEEecCCCEEEEEeCCCcEEEE
Q 009373          159 EAVLTVFVLASAKLLFTSGY-------DSIVRMWHLEDGFSIASSKPLG------CTIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~-------dg~v~iwd~~~~~~~~~~~~~~------~~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      ...-.++|.|+|+++++...       +|.|..||..++..........      ..-+.+.++++.++++.....|...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34566789999998776433       4679999988876544332211      1235667888888888877778888


Q ss_pred             EcccCccceecccCcccccceEEeeCC-ccCEEEEEE--eCCEEEEEec---------------CCeEEEEeCCCceEeE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEH-EGPITSLAL--DLTRIYSGSW---------------DMTVRVWDRALLKCLK  287 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~---------------dg~i~iwd~~~~~~~~  287 (536)
                      +............          ..+. -.....+++  +++..++-..               +|.|..++.. ++...
T Consensus        98 ~~~g~~~~~~~~~----------~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~  166 (314)
T d1pjxa_          98 QTDGTFEEIAKKD----------SEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ  166 (314)
T ss_dssp             ETTSCEEECCSBC----------TTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred             eCCCcEEEEEecc----------ccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE
Confidence            8765432111000          0000 112456677  4455444221               2344444432 33333


Q ss_pred             eeeccccEEE--EeecCC-----EEEEec-CCcEEEEeCCCCcEEE------EEccccccceEEEEEeCCCCEEEEEcCC
Q 009373          288 VLRHSDWVYG--LAPHDT-----TVASTS-GSDVYIWDTNSGCLLT------VVNGAHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       288 ~~~~~~~v~~--~~~~~~-----~l~~~~-d~~i~i~d~~~~~~~~------~~~~~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      ....-...+.  +.+++.     ++++-+ .+.|..||+.....+.      .+........-.+++.++|++.++....
T Consensus       167 ~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~  246 (314)
T d1pjxa_         167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             eeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCC
Confidence            3222222233  335443     344444 6889888876443222      1211223346689999999988888888


Q ss_pred             CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-eEEEEeCCCcEEEEECCc
Q 009373          354 GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~  409 (536)
                      +.|.+||...+      .....+......+++++|.|  + ..++.+.+|.|...++..
T Consensus       247 g~I~~~dp~~g------~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         247 SHIEVFGPDGG------QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCB------SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEeCCCC------EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            99999998766      33444445556789999976  3 456666788888888754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=7.4e-05  Score=65.80  Aligned_cols=219  Identities=10%  Similarity=0.013  Sum_probs=125.1

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeCCC---cEEEEECCCCceeeeeCC-CCceEEEEecCCCEEEEEeC-CCcEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGYDS---IVRMWHLEDGFSIASSKP-LGCTIRAVAADKKLLVAGGT-DGFIHCW  225 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~dg---~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~sg~~-dg~i~vw  225 (536)
                      .+.+..+...+.+-+|||||+.||-.....   .+.+.+..++........ .......++|++..++.... ++...++
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCcccee
Confidence            445555678889999999999998665433   466667766654433322 23345567799998776554 3333333


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEE--eCC-EEEEEecCC--eEEEEeCCCceEeEeeeccccEE--EE
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLT-RIYSGSWDM--TVRVWDRALLKCLKVLRHSDWVY--GL  298 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~v~--~~  298 (536)
                      ......            .................+  ++. .+++...+|  .|...++..+.............  .+
T Consensus       111 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  178 (269)
T d2hqsa1         111 VMDLAS------------GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV  178 (269)
T ss_dssp             EEETTT------------CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             eccccc------------ccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccc
Confidence            322211            111122222223333333  343 344444555  45555666554433333333332  34


Q ss_pred             eecCCEEEEec--CCc--EEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcC---CCcEEEEEcccCccccccc
Q 009373          299 APHDTTVASTS--GSD--VYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGE---DGAIHMYEIINDCTEANVL  371 (536)
Q Consensus       299 ~~~~~~l~~~~--d~~--i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~  371 (536)
                      +++++.++..+  ++.  +.+.|...+... ..  .+........|+|||+.|+..+.   ...++++++...       
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~--~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~-------  248 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL--SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-------  248 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC--CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-------
T ss_pred             ccccceeEEEeecCCceeeeEeecccccce-Ee--ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC-------
Confidence            58888887766  333  555666655442 22  24556677899999998875443   345888888766       


Q ss_pred             eeeeccCCCCCeEEEEEcCC
Q 009373          372 LVATWIPHTGPVNSLAFEFP  391 (536)
Q Consensus       372 ~~~~~~~h~~~v~~l~~~~~  391 (536)
                      ....+....+.+...+|+|.
T Consensus       249 ~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         249 FKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             CEEECCCSSSEEEEEEECCC
T ss_pred             CEEEEeCCCCcEEeEEeCCC
Confidence            23345556677888889874

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.49  E-value=1.7e-05  Score=73.70  Aligned_cols=252  Identities=11%  Similarity=0.131  Sum_probs=135.7

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeee----CCCCceEEEEecCCCEE--EEEe-CCCcEEEEEccc
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASS----KPLGCTIRAVAADKKLL--VAGG-TDGFIHCWRAVE  229 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~l--~sg~-~dg~i~vwd~~~  229 (536)
                      ....+.-|+|+|++++|+++.. +.+..|.+.....+...    .+....-.+++++++.+  +++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455667999999999988765 56777776533222211    11222223445677643  3322 246666655432


Q ss_pred             Ccc--ceecccCcccc-c-ceEEeeCCccCEEEEEE--eCCEEEEEec-CCeEEEEeCCCc-eEe--Eeee---ccccEE
Q 009373          230 VLP--HLFDISGSEKQ-N-TQFRLWEHEGPITSLAL--DLTRIYSGSW-DMTVRVWDRALL-KCL--KVLR---HSDWVY  296 (536)
Q Consensus       230 ~~~--~~~~~~~~~~~-~-~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg~i~iwd~~~~-~~~--~~~~---~~~~v~  296 (536)
                      ...  ..+........ . ...........+.++.|  +++++++++. ...|.+|+.... ...  ....   ......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            110  11111110000 0 01111122334778888  7787777654 457888876533 222  1111   233444


Q ss_pred             EEe--ecCCEEEEec--CCcEEEEeCCCCcEEE--EEc----------------cccccceEEEEEeCCCCEEEEEcC--
Q 009373          297 GLA--PHDTTVASTS--GSDVYIWDTNSGCLLT--VVN----------------GAHVGNTKSLARSHTGDFLFTGGE--  352 (536)
Q Consensus       297 ~~~--~~~~~l~~~~--d~~i~i~d~~~~~~~~--~~~----------------~~~~~~i~~l~~~~~~~~l~tg~~--  352 (536)
                      .+.  |+++++++..  +++|.+|++..+....  ...                ..+......+.++|+|++|+++..  
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            444  8888876665  6889999987664322  110                012224567899999999887642  


Q ss_pred             ----CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC---CeEEEE-eCCCcEEEEECCc
Q 009373          353 ----DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF---PWLVSA-AGDGKLSLIDVRK  409 (536)
Q Consensus       353 ----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~-s~dg~i~vwd~~~  409 (536)
                          .+.|..|++...........+...........+++++|   ++|+++ ..++.|.+|++..
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence                23377777665422111112222223344567788864   666666 4679999998764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.47  E-value=1.8e-05  Score=71.53  Aligned_cols=228  Identities=13%  Similarity=0.008  Sum_probs=140.6

Q ss_pred             CEEEEEE--eCCEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCC--cEEEEE
Q 009373          255 PITSLAL--DLTRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSG--CLLTVV  327 (536)
Q Consensus       255 ~v~~l~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~--~~~~~~  327 (536)
                      .+..+++  +|+.+++...+++|..||.. ++..........+.+++  ++++++++.. ++.+..++....  ......
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            5778888  78888888889999999865 34333344556666665  8899888876 677777765443  222222


Q ss_pred             ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccccc----ceeeeccCCCCCeEEEEEcCCeE-EEEeCCCcE
Q 009373          328 NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANV----LLVATWIPHTGPVNSLAFEFPWL-VSAAGDGKL  402 (536)
Q Consensus       328 ~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~----~~~~~~~~h~~~v~~l~~~~~~l-~s~s~dg~i  402 (536)
                      ........+.+++.+++.++++.+.++.+..+|...+......    ............+..+.+++..+ ++.+..+.|
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i  187 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL  187 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEE
T ss_pred             ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeE
Confidence            2234556889999999999999888898888887765211000    00111122334567888887654 455567888


Q ss_pred             EEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchhh-HHHHHHhhhc
Q 009373          403 SLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAFE-IERRARALRG  481 (536)
Q Consensus       403 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~~-~~~~~~~~~~  481 (536)
                      ..++.........               ......+....-++++.+++++++...++.|..++...... +.....    
T Consensus       188 ~~~~~~~~~~~~~---------------~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~----  248 (302)
T d2p4oa1         188 LRIPVDSTDKPGE---------------PEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQ----  248 (302)
T ss_dssp             EEEEBCTTSCBCC---------------CEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGG----
T ss_pred             Eeccccccccccc---------------cccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCC----
Confidence            8888765321110               00111122223356667778888888889999887764321 111111    


Q ss_pred             ccchhHHHhhhhcccc---ccCCCCcceeE
Q 009373          482 IRLENRMRRRKLQTEM---SSKGGRTDQCS  508 (536)
Q Consensus       482 ~~~~~~~~~~~~~~~~---~~~g~~~~~~~  508 (536)
                            .-.....++|   ++|++.|.++.
T Consensus       249 ------~~~~pt~vafg~~~~D~~~Lyvtt  272 (302)
T d2p4oa1         249 ------GVIGSTAVAFGQTEGDCTAIYVVT  272 (302)
T ss_dssp             ------TCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             ------CCCCceEEEEcCCCCCCCEEEEEC
Confidence                  1123567888   67777776553

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.46  E-value=0.00021  Score=63.24  Aligned_cols=233  Identities=11%  Similarity=0.133  Sum_probs=133.5

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--e-CCEEEE-EecCCeEEEEe
Q 009373          204 RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--D-LTRIYS-GSWDMTVRVWD  279 (536)
Q Consensus       204 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~-~~~l~s-~s~dg~i~iwd  279 (536)
                      +++.++++++++-..+..|++||.+......+.....        ..+....-..+++  + +..+++ .+.++.|..++
T Consensus        28 vavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          28 VAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGK--------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSS--------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             EEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCC--------CcccccccccccccccccccceeccCCcccccccc
Confidence            4566788877777777888888864321111100000        0011112334444  2 233333 34556777777


Q ss_pred             CCCceEeEeee--ccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEc-cccccceEEEEEeCCCCEEEEEcCC
Q 009373          280 RALLKCLKVLR--HSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVN-GAHVGNTKSLARSHTGDFLFTGGED  353 (536)
Q Consensus       280 ~~~~~~~~~~~--~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~tg~~d  353 (536)
                      . .++....+.  .......++  +++.++++.. .+.+.+++.. ++.+..+. ..+......+++.+++..+++....
T Consensus       100 ~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         100 Q-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             T-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             c-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccc
Confidence            6 455555554  233344444  7778777766 5778888864 55555542 2456678899999999999999999


Q ss_pred             CcEEEEEcccCccccccceeeec--cCCCCCeEEEEEcC--CeEEEEeC-CCcEEEEECCcccccCCCCCCCceeeEEee
Q 009373          354 GAIHMYEIINDCTEANVLLVATW--IPHTGPVNSLAFEF--PWLVSAAG-DGKLSLIDVRKLLRSGRPTSGKRVSRVIEV  428 (536)
Q Consensus       354 g~i~iwd~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~--~~l~s~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  428 (536)
                      +.|++||....       .+.++  .+......+|++++  +.+++-.. ++.|.+|+..-          +.+..+...
T Consensus       178 ~~V~~~d~~G~-------~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G----------~~~~~~~~~  240 (279)
T d1q7fa_         178 HCVKVFNYEGQ-------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG----------QLISALESK  240 (279)
T ss_dssp             TEEEEEETTCC-------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS----------CEEEEEEES
T ss_pred             cceeeeecCCc-------eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCC----------CEEEEEeCC
Confidence            99999997543       23333  24555678899975  45554433 45688987432          111111100


Q ss_pred             CCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchh
Q 009373          429 EPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       429 ~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~  470 (536)
                            .......-.++.+++.+++ ++.+..|++|++....
T Consensus       241 ------~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         241 ------VKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ------SCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             ------CCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence                  0111122334555555444 5578999999998753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.40  E-value=0.0004  Score=62.80  Aligned_cols=226  Identities=8%  Similarity=-0.025  Sum_probs=126.9

Q ss_pred             ccccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCc--eEEEEecCCCEEEEEeCC----CcEEEEEcccC
Q 009373          157 HTEAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC--TIRAVAADKKLLVAGGTD----GFIHCWRAVEV  230 (536)
Q Consensus       157 h~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~d----g~i~vwd~~~~  230 (536)
                      ....+..++|.++|++.++-...+.|..|+.+++...........  .-+++.++|+++++...+    +.+...+..+.
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            344456899999999888888899999999887765554433332  345566888877765432    23333333322


Q ss_pred             ccceecccCcccccceEEeeCC---ccCEEEEEE--eCCEEEEEec------CCeEEEEeCCCceEeEeeeccccEEEE-
Q 009373          231 LPHLFDISGSEKQNTQFRLWEH---EGPITSLAL--DLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSDWVYGL-  298 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~--~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~v~~~-  298 (536)
                      .              ......+   ......+++  +|+..++...      .+.+..++............-...+.+ 
T Consensus       118 ~--------------~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia  183 (319)
T d2dg1a1         118 N--------------LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIA  183 (319)
T ss_dssp             S--------------CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred             e--------------eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeee
Confidence            1              1111111   234567777  5554444221      133555555443332222222233344 


Q ss_pred             -eecCCEEEEec--CCcEEEEeCCCC-cEEEEE------ccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCcccc
Q 009373          299 -APHDTTVASTS--GSDVYIWDTNSG-CLLTVV------NGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEA  368 (536)
Q Consensus       299 -~~~~~~l~~~~--d~~i~i~d~~~~-~~~~~~------~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~  368 (536)
                       +++++.|+.+.  .+.|..||+... ......      ........-.++++++|++.++....+.|.+||. .+....
T Consensus       184 ~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         184 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred             eccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEE
Confidence             47887665544  689999987643 111111      1112234668999999998888888999999996 442111


Q ss_pred             ccceeeeccCCCCCeEEEEEcC--CeEEEEe
Q 009373          369 NVLLVATWIPHTGPVNSLAFEF--PWLVSAA  397 (536)
Q Consensus       369 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s  397 (536)
                      .+..-..-.++...+++++|.+  ..+++.+
T Consensus       263 ~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         263 QILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             EEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            1111111124555788999975  4454444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.40  E-value=0.00024  Score=64.05  Aligned_cols=233  Identities=10%  Similarity=0.079  Sum_probs=130.8

Q ss_pred             EEecCCCEEEEEeC-------CCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeE
Q 009373          205 AVAADKKLLVAGGT-------DGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTV  275 (536)
Q Consensus       205 ~~~~~~~~l~sg~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i  275 (536)
                      ++.++|+++++...       +|+|..||..++....+...         ......+.-..+.+  +++.++++...+.|
T Consensus        24 a~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i   94 (314)
T d1pjxa_          24 VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------EVNGYGGIPAGCQCDRDANQLFVADMRLGL   94 (314)
T ss_dssp             EECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------EETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred             EEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---------ccccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence            55678876665332       46788888766532111100         00011223567888  56788888877888


Q ss_pred             EEEeCCCceEeEeee-cc-c---cEEE--EeecCCEEEEecC----------------CcEEEEeCCCCcEEEEEccccc
Q 009373          276 RVWDRALLKCLKVLR-HS-D---WVYG--LAPHDTTVASTSG----------------SDVYIWDTNSGCLLTVVNGAHV  332 (536)
Q Consensus       276 ~iwd~~~~~~~~~~~-~~-~---~v~~--~~~~~~~l~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~  332 (536)
                      ...|........... .. .   ..+.  +.++|++.++...                +.|..++.. ++.....  ...
T Consensus        95 ~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~--~~~  171 (314)
T d1pjxa_          95 LVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD--TAF  171 (314)
T ss_dssp             EEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE--EEE
T ss_pred             EEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee--CCc
Confidence            889986554322211 11 1   1233  3477887776431                234444432 3333222  233


Q ss_pred             cceEEEEEeCCCC-----EEEEEcCCCcEEEEEcccCccccccceeeeccC-CCCCeEEEEEcC--CeEEEEeCCCcEEE
Q 009373          333 GNTKSLARSHTGD-----FLFTGGEDGAIHMYEIINDCTEANVLLVATWIP-HTGPVNSLAFEF--PWLVSAAGDGKLSL  404 (536)
Q Consensus       333 ~~i~~l~~~~~~~-----~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~v  404 (536)
                      ...+.++|+|+++     +.++-+..+.|..||+..............+.+ +......++++.  ++.++....+.|.+
T Consensus       172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~  251 (314)
T d1pjxa_         172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence            4557899999875     555667788999999876533222222223322 233456888864  56666667889999


Q ss_pred             EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecC--C-EEEEecCCCeEEEEeCCc
Q 009373          405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGA--D-RIVCGGEEGIVRIWNFSQ  468 (536)
Q Consensus       405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~sg~~Dg~i~vW~~~~  468 (536)
                      ||.+.....                   ..+........++++.+  + +++|.+.+|.|...++..
T Consensus       252 ~dp~~g~~~-------------------~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         252 FGPDGGQPK-------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             ECTTCBSCS-------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EeCCCCEEE-------------------EEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            998753211                   11111122334455544  3 678888889888888763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.38  E-value=7.1e-05  Score=65.70  Aligned_cols=187  Identities=12%  Similarity=0.030  Sum_probs=110.3

Q ss_pred             EEEEecCCCEEEEE-eCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEecCCeEEEEe
Q 009373          203 IRAVAADKKLLVAG-GTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSWDMTVRVWD  279 (536)
Q Consensus       203 v~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~iwd  279 (536)
                      -+++.++|+..++. +..+.+..++......            ......+ ......+++  ++..+++....+.+++++
T Consensus        18 ~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~------------~~~~~~~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~   84 (260)
T d1rwia_          18 GVAVDSAGNVYVTSEGMYGRVVKLATGSTGT------------TVLPFNG-LYQPQGLAVDGAGTVYVTDFNNRVVTLAA   84 (260)
T ss_dssp             EEEECTTCCEEEEECSSSCEEEEEC----CE------------EECCCCS-CCSCCCEEECTTCCEEEEETTTEEEEECT
T ss_pred             EEEEcCCCCEEEEEcCCCCEEEEEcCCCceE------------EEeccCC-ccCceEEEEcCCCCEEEeeeeeceeeeee
Confidence            34666788866654 4456777666543211            1111111 122345666  556666666666666666


Q ss_pred             CCCceEeEeeeccccEEEEe--ecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcE
Q 009373          280 RALLKCLKVLRHSDWVYGLA--PHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAI  356 (536)
Q Consensus       280 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i  356 (536)
                      -.+..............+++  ++++++++.. +..+..++.......... .........++++++++++++...++.|
T Consensus        85 ~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~~~v~~~~~~~i  163 (260)
T d1rwia_          85 GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRV  163 (260)
T ss_dssp             TCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred             eccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeee-ecccCCcceeeecCCCCEeeeccccccc
Confidence            55555444433334455665  6777777665 566777776654432222 1223456789999999988888888999


Q ss_pred             EEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECCc
Q 009373          357 HMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       357 ~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~  409 (536)
                      ..+|.....      ..............|++++  +++++....+.|..++...
T Consensus       164 ~~~d~~~~~------~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         164 VKLEAESNN------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             EEECTTTCC------EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred             cccccccce------eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence            999877652      2222224455678899975  4555555577888887654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.26  E-value=0.00061  Score=62.83  Aligned_cols=163  Identities=15%  Similarity=0.196  Sum_probs=89.3

Q ss_pred             EEEEe--ecCCEEEEec--CCcEEEEeCCCC-cEE--EEE-ccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCc
Q 009373          295 VYGLA--PHDTTVASTS--GSDVYIWDTNSG-CLL--TVV-NGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDC  365 (536)
Q Consensus       295 v~~~~--~~~~~l~~~~--d~~i~i~d~~~~-~~~--~~~-~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~  365 (536)
                      +.++.  |++++++++.  ...|.+|+.... ...  ... ........+.++|+|+++++.+. ..++.|.+|++....
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            44444  8999888877  467888876543 222  111 11245678999999999987554 457889999987653


Q ss_pred             cccccceeee--------------ccCCCCCeEEEEEcC--CeEEEEeC-C-----CcEEEEECCcccccCCCCCCCcee
Q 009373          366 TEANVLLVAT--------------WIPHTGPVNSLAFEF--PWLVSAAG-D-----GKLSLIDVRKLLRSGRPTSGKRVS  423 (536)
Q Consensus       366 ~~~~~~~~~~--------------~~~h~~~v~~l~~~~--~~l~s~s~-d-----g~i~vwd~~~~~~~~~~~~~~~~~  423 (536)
                      ... ......              ...+......+.++|  ++|+++.. +     +.|..|++......         .
T Consensus       227 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~---------~  296 (365)
T d1jofa_         227 HMP-VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI---------E  296 (365)
T ss_dssp             CCE-EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE---------E
T ss_pred             ceE-EEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCce---------e
Confidence            210 001111              111223455778876  67776642 2     23666766542111         0


Q ss_pred             eEEeeCCCeeeeccccccEEEEEe-cCCEE-EEecCCCeEEEEeCCch
Q 009373          424 RVIEVEPPQRMLHGFECNLLSVDI-GADRI-VCGGEEGIVRIWNFSQA  469 (536)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l-~sg~~Dg~i~vW~~~~~  469 (536)
                      .......  ....|....-+++++ ++++| ++...++.|.+|+++..
T Consensus       297 ~~~~~~~--~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         297 KQLFLSP--TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEE--CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             eEeEeeE--EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            0000000  000122223345554 56754 56678899999988643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.01  E-value=0.0042  Score=55.03  Aligned_cols=208  Identities=13%  Similarity=0.022  Sum_probs=121.4

Q ss_pred             EEEEecC-CCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcc
Q 009373          163 TVFVLAS-AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSE  241 (536)
Q Consensus       163 ~v~~~~~-~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  241 (536)
                      +..|++. +.++.+--..+.|.-||.++++......+......++..++.++++ +.+ .+..+|..++....+      
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l------   93 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLH------   93 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEE------
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEE------
Confidence            4557764 5555555567899999999886543333344444455577766654 444 588899877642211      


Q ss_pred             cccceEEeeC--CccCEEEEEE--eCCEEEEEec----CCeEEEEeCCCceEeEeeeccccEEEE--eecCCEEE-Eec-
Q 009373          242 KQNTQFRLWE--HEGPITSLAL--DLTRIYSGSW----DMTVRVWDRALLKCLKVLRHSDWVYGL--APHDTTVA-STS-  309 (536)
Q Consensus       242 ~~~~~~~~~~--h~~~v~~l~~--~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~~~v~~~--~~~~~~l~-~~~-  309 (536)
                           .....  ....+.++.+  +|+..++...    .+.-.+|.+..++.......-...+.+  +++++.++ +.+ 
T Consensus        94 -----~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~  168 (295)
T d2ghsa1          94 -----AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTK  168 (295)
T ss_dssp             -----ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred             -----eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecc
Confidence                 11111  1224666777  4444443322    234456666666555444422223333  46776554 444 


Q ss_pred             CCcEEEEeCCCC------cE-EEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCC
Q 009373          310 GSDVYIWDTNSG------CL-LTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGP  382 (536)
Q Consensus       310 d~~i~i~d~~~~------~~-~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~  382 (536)
                      .+.|..|++...      +. ......+..+....+++..+|++.++....+.|..||.. +      +.+..+.-....
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G------~~~~~i~lP~~~  241 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G------NHIARYEVPGKQ  241 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C------CEEEEEECSCSB
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-C------cEeeEecCCCCc
Confidence            678988876431      11 111112345567889999999988877778899999964 4      344444444567


Q ss_pred             eEEEEEcC
Q 009373          383 VNSLAFEF  390 (536)
Q Consensus       383 v~~l~~~~  390 (536)
                      +++++|-+
T Consensus       242 ~T~~~FGG  249 (295)
T d2ghsa1         242 TTCPAFIG  249 (295)
T ss_dssp             EEEEEEES
T ss_pred             eEEEEEeC
Confidence            89999964

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.89  E-value=0.007  Score=53.50  Aligned_cols=179  Identities=11%  Similarity=-0.027  Sum_probs=107.7

Q ss_pred             EEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee
Q 009373          212 LLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR  290 (536)
Q Consensus       212 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  290 (536)
                      +..+--..+.|..||..++..               ........+.++++ ..+.|+.++.+ .+..+|..+++......
T Consensus        32 l~wvDi~~~~I~r~d~~~g~~---------------~~~~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          32 AWWFNILERELHELHLASGRK---------------TVHALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEGGGTEEEEEETTTTEE---------------EEEECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCEEEEEECCCCeE---------------EEEECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEee
Confidence            333333556777777765421               11122345778888 44556666654 58899999887654433


Q ss_pred             --c---cccEEEEe--ecCCEEEEec-C----CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEE-EEEcCCCcEE
Q 009373          291 --H---SDWVYGLA--PHDTTVASTS-G----SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIH  357 (536)
Q Consensus       291 --~---~~~v~~~~--~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~tg~~dg~i~  357 (536)
                        .   ...++.+.  ++|++.++.. .    +.-.+|.+..++......  .....+.++|+++++.+ ++-+..+.|.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~  173 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLM  173 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecCCCceEEEeecccceee
Confidence              1   12344443  8888877754 1    345667766776544442  34456789999999855 5556678899


Q ss_pred             EEEcccCccc--cccceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          358 MYEIINDCTE--ANVLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       358 iwd~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      .|++......  ..........+..+....++++.  ++.++.-..+.|..||..
T Consensus       174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             EeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence            9987543211  11122233344556678888875  445554567789999964

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=0.0088  Score=51.73  Aligned_cols=198  Identities=13%  Similarity=0.123  Sum_probs=106.0

Q ss_pred             eeCCccCEEEEEE--eCCEEEEEecCC---eEEEEeCCCceEeEeeeccccEEE--EeecCCEEEEec--CCc--EEEEe
Q 009373          249 LWEHEGPITSLAL--DLTRIYSGSWDM---TVRVWDRALLKCLKVLRHSDWVYG--LAPHDTTVASTS--GSD--VYIWD  317 (536)
Q Consensus       249 ~~~h~~~v~~l~~--~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~--d~~--i~i~d  317 (536)
                      +..+...+.+-+|  ||+.|+......   .+.+.+...+.......+......  .+|++..++...  ++.  +..+.
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~  113 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD  113 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecc
Confidence            3445677888899  888888765443   477777777766555555444444  448888887765  333  33333


Q ss_pred             CCCCcEEEEEccccccceEEEEEeCCCCEE-EEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEE
Q 009373          318 TNSGCLLTVVNGAHVGNTKSLARSHTGDFL-FTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV  394 (536)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~  394 (536)
                      ..........  ..........+++++..+ ++...+|...+|......     .....+..+........|+|  ..++
T Consensus       114 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~spdg~~~~  186 (269)
T d2hqsa1         114 LASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-----GAPQRITWEGSQNQDADVSSDGKFMV  186 (269)
T ss_dssp             TTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-----SCCEECCCSSSEEEEEEECTTSSEEE
T ss_pred             cccccceeee--eccccccccccccccccceecccccCCceEeeeeccc-----ccceeeecccccccccccccccceeE
Confidence            3333333322  244444555677777654 444456655555443321     12223334555666777876  4555


Q ss_pred             EEe-CCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEe---cCCCeEEEEeCCchh
Q 009373          395 SAA-GDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCG---GEEGIVRIWNFSQAF  470 (536)
Q Consensus       395 s~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg---~~Dg~i~vW~~~~~~  470 (536)
                      ..+ ..+...+|........                 ..............++++|++|+-.   +....|+++++..+.
T Consensus       187 ~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~  249 (269)
T d2hqsa1         187 MVSSNGGQQHIAKQDLATGG-----------------VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF  249 (269)
T ss_dssp             EEEECSSCEEEEEEETTTCC-----------------EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred             EEeecCCceeeeEeeccccc-----------------ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            444 4455555544321100                 0011112223334677778766533   334578899988654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=0.0099  Score=51.05  Aligned_cols=187  Identities=17%  Similarity=0.243  Sum_probs=121.7

Q ss_pred             CCeEEEEeCCCceEeEeeeccccEEEEe-ecCCEEEEecCCcEEEEeCCCC-cEEEEEccccc----cceEEEEEeCCCC
Q 009373          272 DMTVRVWDRALLKCLKVLRHSDWVYGLA-PHDTTVASTSGSDVYIWDTNSG-CLLTVVNGAHV----GNTKSLARSHTGD  345 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~~i~~l~~~~~~~  345 (536)
                      ..++.+||+++.+.++.+.....|.-.. -+.+.|+..++..|+-|++... .+...+.. |.    ..|..-..+++.+
T Consensus        82 g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR-~~~L~~~QIInY~~d~~~k  160 (327)
T d1utca2          82 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQK  160 (327)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTSC
T ss_pred             CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhh-cccccCceEEEEEECCCCC
Confidence            5789999999999999999777777666 6788999999999999999543 45555542 32    4677788889999


Q ss_pred             EEEEEc---C----CCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC-----CeEEEEe---CCCcEEEEECCcc
Q 009373          346 FLFTGG---E----DGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF-----PWLVSAA---GDGKLSLIDVRKL  410 (536)
Q Consensus       346 ~l~tg~---~----dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~s~s---~dg~i~vwd~~~~  410 (536)
                      +++..+   .    .|.+.+|.....       .-+.+.||.+.-..+..++     ..++.+.   ..+++.+-++...
T Consensus       161 W~~l~GI~~~~~~i~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~  233 (327)
T d1utca2         161 WLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  233 (327)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCC
T ss_pred             EEEEEeEecCCCceeEEEEEEEeccC-------cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCC
Confidence            876543   2    367888887665       4566778877777776653     2333332   2368899998764


Q ss_pred             cccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHH
Q 009373          411 LRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIE  473 (536)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~  473 (536)
                      ....... .++...+.  .++.    ....--.++..+.+  .+..-..-|.|++||++++..+.
T Consensus       234 ~~g~~~f-~kk~vdi~--fppe----a~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         234 PTGNQPF-PKKAVDVF--FPPE----AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             CTTCCCC-CCEEEECC--CCTT----CTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             ccCCCCC-cceeEEEE--CCcc----ccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence            2211111 11111111  0110    01112234555554  66677778999999999998764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.68  E-value=0.011  Score=51.36  Aligned_cols=220  Identities=11%  Similarity=0.042  Sum_probs=114.4

Q ss_pred             EEecC--CCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec-CC-----e
Q 009373          205 AVAAD--KKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW-DM-----T  274 (536)
Q Consensus       205 ~~~~~--~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-dg-----~  274 (536)
                      .++|+  |+.++..+ +|.|.+.|+.++.              ...+..+.+.+...+|  ||+.|+.... ++     .
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--------------~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~   69 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--------------TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTAD   69 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--------------EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--------------EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceE
Confidence            35688  88877654 4578888887652              3445667777888888  7888875532 22     4


Q ss_pred             EEEEeCCCceEeEeeecc---------ccEEEEeecCCEEEEecC-------CcEEEEeCCCCcEEEEEccccccceEEE
Q 009373          275 VRVWDRALLKCLKVLRHS---------DWVYGLAPHDTTVASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSL  338 (536)
Q Consensus       275 i~iwd~~~~~~~~~~~~~---------~~v~~~~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~i~~l  338 (536)
                      |.+++..+++........         ......+|+++.++....       ..+...+...+.....    +.......
T Consensus        70 i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  145 (281)
T d1k32a2          70 LYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL----NLGPATHI  145 (281)
T ss_dssp             EEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC----CSCSCSEE
T ss_pred             EEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe----cCCcccee
Confidence            777888877765543211         122345588888876541       1244555554443221    22222223


Q ss_pred             EEeCCCCEEEEEcCCC-----------cEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEe-CC--CcEEE
Q 009373          339 ARSHTGDFLFTGGEDG-----------AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA-GD--GKLSL  404 (536)
Q Consensus       339 ~~~~~~~~l~tg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~d--g~i~v  404 (536)
                      .+.+.+..++....+.           ..........       .......+........+++..++... .+  ..|.+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  218 (281)
T d1k32a2         146 LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-------AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYS  218 (281)
T ss_dssp             EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-------EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEE
T ss_pred             eecCCCeEEEeeccccceeeeeccCCcceeeeecccc-------ceeeccCCccccceeeeeccccceecccccccceEE
Confidence            2333333333322211           1111111111       11112223334445555565555444 33  35677


Q ss_pred             EECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCCEEEEecCCCeEEEEeCCchh
Q 009373          405 IDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGADRIVCGGEEGIVRIWNFSQAF  470 (536)
Q Consensus       405 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~Dg~i~vW~~~~~~  470 (536)
                      +|+.+...                   ..........+..++++++.|+-. .+|.|+++|+.+++
T Consensus       219 ~d~~g~~~-------------------~~lt~~~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         219 TDLDGKDL-------------------RKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             EETTSCSC-------------------EECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             EeCCCCce-------------------EEeecCCCcccccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            77765311                   111122233456788999866543 36789999998775

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.59  E-value=0.01  Score=57.72  Aligned_cols=186  Identities=13%  Similarity=0.070  Sum_probs=107.6

Q ss_pred             CCCEEEEEeCCCcEEEEEC-CCCceeeeeCCCCc----eE-------EEEecCCCEEEEEeCCCcEEEEEcccCccceec
Q 009373          169 SAKLLFTSGYDSIVRMWHL-EDGFSIASSKPLGC----TI-------RAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFD  236 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  236 (536)
                      +|.++++.+.++.|...|. ++|+.+.++.....    ..       ..+...+..++.++.||.+...|.++++.....
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~~  141 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhccc
Confidence            3444444445788999997 47998887643211    00       112233567888999999999999988632110


Q ss_pred             ccCcccccceEEeeC-C-ccCEEE-EEEeCCEEEEEe------cCCeEEEEeCCCceEeEeeecc---------------
Q 009373          237 ISGSEKQNTQFRLWE-H-EGPITS-LALDLTRIYSGS------WDMTVRVWDRALLKCLKVLRHS---------------  292 (536)
Q Consensus       237 ~~~~~~~~~~~~~~~-h-~~~v~~-l~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~---------------  292 (536)
                                 .+.. + ...+++ -.+.++.++.+.      .+|.|+-+|+.+++.+..+...               
T Consensus       142 -----------~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~  210 (571)
T d2ad6a1         142 -----------EVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSA  210 (571)
T ss_dssp             -----------ECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTT
T ss_pred             -----------cccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccccccccccc
Confidence                       0000 0 011111 112334455544      3788999999999998876411               


Q ss_pred             -----------------------ccE---EEEeecCCEEEEecC-----------------CcEEEEeCCCCcEEEEEcc
Q 009373          293 -----------------------DWV---YGLAPHDTTVASTSG-----------------SDVYIWDTNSGCLLTVVNG  329 (536)
Q Consensus       293 -----------------------~~v---~~~~~~~~~l~~~~d-----------------~~i~i~d~~~~~~~~~~~~  329 (536)
                                             ..+   .++.+...++..+.+                 ..+...|.++|+.+-.+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~  290 (571)
T d2ad6a1         211 NPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQK  290 (571)
T ss_dssp             CGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred             ccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccc
Confidence                                   011   234444444443331                 3477889999998877753


Q ss_pred             ccc--------cceEEEEEeCCCC---EEEEEcCCCcEEEEEcccCc
Q 009373          330 AHV--------GNTKSLARSHTGD---FLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       330 ~~~--------~~i~~l~~~~~~~---~l~tg~~dg~i~iwd~~~~~  365 (536)
                      .|.        ..........+++   .++.++.+|.+.++|..+++
T Consensus       291 ~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         291 TPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             STTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             cCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence            221        1122222333443   56788899999999988774

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.54  E-value=0.017  Score=56.31  Aligned_cols=186  Identities=13%  Similarity=0.047  Sum_probs=107.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc----------e-EEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC----------T-IRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~----------~-v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..|+.++.++.|.-+|.++|+.+..+.....          . -......+..++.++.|+.+...|..+++..-..  
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~--  154 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ--  154 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE--
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecccceeeeccccccceecc--
Confidence            44677778889999999999999987643210          0 0111223456778888999988888887532110  


Q ss_pred             CcccccceEEeeCCc-cCE--EE-EEEeCCEEEEEec------CCeEEEEeCCCceEeEeeecc----------------
Q 009373          239 GSEKQNTQFRLWEHE-GPI--TS-LALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHS----------------  292 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~-~~v--~~-l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~----------------  292 (536)
                               ....+. ..+  +. -.+..+.++.++.      .|.|+.+|.++|+.+..+...                
T Consensus       155 ---------~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~  225 (573)
T d1kb0a2         155 ---------NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRA  225 (573)
T ss_dssp             ---------ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHH
T ss_pred             ---------cCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCccccccc
Confidence                     000000 011  00 1113445555432      478999999999998876410                


Q ss_pred             ----------------cc---EEEEeecCCEEEEec--------------------CCcEEEEeCCCCcEEEEEccccc-
Q 009373          293 ----------------DW---VYGLAPHDTTVASTS--------------------GSDVYIWDTNSGCLLTVVNGAHV-  332 (536)
Q Consensus       293 ----------------~~---v~~~~~~~~~l~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~-  332 (536)
                                      ..   ..++.+....+....                    ...|.-.|+++++....+...+. 
T Consensus       226 ~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d  305 (573)
T d1kb0a2         226 ARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD  305 (573)
T ss_dssp             HTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC
T ss_pred             ccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcc
Confidence                            01   123334444443221                    12477788888887766543221 


Q ss_pred             -------cceEEEEEeCCC---CEEEEEcCCCcEEEEEcccCcc
Q 009373          333 -------GNTKSLARSHTG---DFLFTGGEDGAIHMYEIINDCT  366 (536)
Q Consensus       333 -------~~i~~l~~~~~~---~~l~tg~~dg~i~iwd~~~~~~  366 (536)
                             ..........++   ..++.++.+|.+.++|..+++.
T Consensus       306 ~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~  349 (573)
T d1kb0a2         306 NWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF  349 (573)
T ss_dssp             CSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             cccccccceeeecceecCCCceeeeeeccccceeEEeccccccc
Confidence                   122222223333   4677888999999999888753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.47  E-value=0.032  Score=49.64  Aligned_cols=189  Identities=10%  Similarity=0.066  Sum_probs=106.7

Q ss_pred             EEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE--eCCEEEEEec----CCeEEEE
Q 009373          205 AVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL--DLTRIYSGSW----DMTVRVW  278 (536)
Q Consensus       205 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~----dg~i~iw  278 (536)
                      ++.++|++.++-..++.|..|+..++.             ..............+++  +++.+++...    .+.+...
T Consensus        46 ~~D~~G~Ly~~D~~~g~I~ri~p~g~~-------------~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~  112 (319)
T d2dg1a1          46 NFDRQGQLFLLDVFEGNIFKINPETKE-------------IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  112 (319)
T ss_dssp             EECTTSCEEEEETTTCEEEEECTTTCC-------------EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             EECCCCCEEEEECCCCEEEEEECCCCe-------------EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEE
Confidence            344666666666667777777765432             12222334456778888  5555555432    2345555


Q ss_pred             eCCCceEeEeeec---cccEEEE--eecCCEEEEecC-------CcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCE
Q 009373          279 DRALLKCLKVLRH---SDWVYGL--APHDTTVASTSG-------SDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDF  346 (536)
Q Consensus       279 d~~~~~~~~~~~~---~~~v~~~--~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  346 (536)
                      +..+.........   ......+  .++|++.++...       +.+..++...+. +..+. ......+.++|+|+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~-~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         113 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPII-QNISVANGIALSTDEKV  190 (319)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEE-EEESSEEEEEECTTSSE
T ss_pred             cCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEe-eccceeeeeeeccccce
Confidence            6555544443332   2233443  388887776542       235555554433 22222 13345678999999986


Q ss_pred             E-EEEcCCCcEEEEEcccCcccccc--ceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcEEEEECC
Q 009373          347 L-FTGGEDGAIHMYEIINDCTEANV--LLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKLSLIDVR  408 (536)
Q Consensus       347 l-~tg~~dg~i~iwd~~~~~~~~~~--~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~  408 (536)
                      | ++-+..+.|..|++.........  ...............++++.  ++.++....+.|.++|..
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            5 55567889999998654221110  01111112223356788864  666777778999999964

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.42  E-value=0.021  Score=55.31  Aligned_cols=185  Identities=15%  Similarity=0.031  Sum_probs=107.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc-----------eEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC-----------TIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~-----------~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..|+.++.++.|.-.|.++|+.+.++.....           ........+..++.+..|+.+...|..+++..-..  
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~--  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQ--  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEE--
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEecc--
Confidence            44666778889999999999999987643211           00111233567888999999999998887532110  


Q ss_pred             CcccccceEEeeCCcc--CEE-EEEEeCCEEEEEec------CCeEEEEeCCCceEeEeeecc-----------------
Q 009373          239 GSEKQNTQFRLWEHEG--PIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHS-----------------  292 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~--~v~-~l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~-----------------  292 (536)
                               ....+..  .++ .-.+..+.++.+..      .|.|.-+|.++++.+..+...                 
T Consensus       144 ---------~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  214 (560)
T d1kv9a2         144 ---------QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAA  214 (560)
T ss_dssp             ---------ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred             ---------CccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccc
Confidence                     0000000  000 01113344444432      378999999999998877510                 


Q ss_pred             --------------ccE---EEEeecCCEEEEec--------------------CCcEEEEeCCCCcEEEEEcccccc--
Q 009373          293 --------------DWV---YGLAPHDTTVASTS--------------------GSDVYIWDTNSGCLLTVVNGAHVG--  333 (536)
Q Consensus       293 --------------~~v---~~~~~~~~~l~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~--  333 (536)
                                    ..+   .++.+...++..+.                    ...|.-.|+++++....+...|..  
T Consensus       215 ~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~w  294 (560)
T d1kv9a2         215 KTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSW  294 (560)
T ss_dssp             TTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccc
Confidence                          011   23344444444322                    124777899999987766432211  


Q ss_pred             ------ceEEEEEeCCC---CEEEEEcCCCcEEEEEcccCc
Q 009373          334 ------NTKSLARSHTG---DFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       334 ------~i~~l~~~~~~---~~l~tg~~dg~i~iwd~~~~~  365 (536)
                            ...-+....++   ..++.++.+|.+.++|..+++
T Consensus       295 d~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~  335 (560)
T d1kv9a2         295 DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (560)
T ss_dssp             CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCc
Confidence                  11122222344   367788899999999988874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.33  E-value=0.066  Score=51.81  Aligned_cols=62  Identities=10%  Similarity=0.028  Sum_probs=40.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCC---c-eEE--EEecCCCEEEEEe------CCCcEEEEEcccCcc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG---C-TIR--AVAADKKLLVAGG------TDGFIHCWRAVEVLP  232 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~---~-~v~--~~~~~~~~l~sg~------~dg~i~vwd~~~~~~  232 (536)
                      +..++.++.||.+.--|.++|+.+.......   . .+.  -+..+ ..++.+.      .+|.|.-+|+.+++.
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~  188 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcE
Confidence            4467778899999999999998876653211   1 110  01123 4445554      368899999999874

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.072  Score=50.09  Aligned_cols=72  Identities=8%  Similarity=-0.048  Sum_probs=49.2

Q ss_pred             ccEEEEEEecCCCEEEEEe---------CCCcEEEEECCCCceeeee--CCCCce--EEEEecCCCEEEEEeCCCcEEEE
Q 009373          159 EAVLTVFVLASAKLLFTSG---------YDSIVRMWHLEDGFSIASS--KPLGCT--IRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs---------~dg~v~iwd~~~~~~~~~~--~~~~~~--v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      -.+....|+||+++++.+.         ..+...++|+.++......  ......  ...++|+|+.+|-.. ++.|.+.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            3567788999999887763         3578899999988654322  122222  246789999888765 5678787


Q ss_pred             EcccCc
Q 009373          226 RAVEVL  231 (536)
Q Consensus       226 d~~~~~  231 (536)
                      +..++.
T Consensus       140 ~~~~~~  145 (465)
T d1xfda1         140 AHVGKQ  145 (465)
T ss_dssp             SSSSSC
T ss_pred             ecCCCc
Confidence            776553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.20  E-value=0.076  Score=48.32  Aligned_cols=150  Identities=12%  Similarity=0.146  Sum_probs=85.5

Q ss_pred             EEEecCCCEEEEEeCCC-----------cEEEEECCCCceee--ee---CCCCceEEEEecCCCEEEEEeCC-CcEEEEE
Q 009373          164 VFVLASAKLLFTSGYDS-----------IVRMWHLEDGFSIA--SS---KPLGCTIRAVAADKKLLVAGGTD-GFIHCWR  226 (536)
Q Consensus       164 v~~~~~~~~l~sgs~dg-----------~v~iwd~~~~~~~~--~~---~~~~~~v~~~~~~~~~l~sg~~d-g~i~vwd  226 (536)
                      .....+|++++.|+.+.           .+.+||..+++-..  ..   ..+-+....+.+++.+++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33455788888888531           37799998875321  11   12223344566899999988766 6899999


Q ss_pred             cccCccceecccCcccccceEEeeCCccCEEEEEE-eCCEEEEEecC------CeEEEEeCCCceEeEeee---------
Q 009373          227 AVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL-DLTRIYSGSWD------MTVRVWDRALLKCLKVLR---------  290 (536)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~---------  290 (536)
                      ..+....           ....+......-..... ++..++.|+.+      ..+.+||..+.+-...-.         
T Consensus       105 ~~~~~w~-----------~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~  173 (387)
T d1k3ia3         105 SSSDSWI-----------PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTA  173 (387)
T ss_dssp             GGGTEEE-----------ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCC
T ss_pred             CccCccc-----------ccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccc
Confidence            8775321           11111111112223333 77888887643      368999988765322110         


Q ss_pred             -c------cccEEEEe-ecCCEEEEec-CCcEEEEeCCCCcEE
Q 009373          291 -H------SDWVYGLA-PHDTTVASTS-GSDVYIWDTNSGCLL  324 (536)
Q Consensus       291 -~------~~~v~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~  324 (536)
                       +      ......+. ++++.++.+. .+.+.++|..+....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~  216 (387)
T d1k3ia3         174 DKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK  216 (387)
T ss_dssp             CTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE
T ss_pred             cccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEe
Confidence             0      01111222 5667666665 567777887776543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.05  E-value=0.065  Score=46.05  Aligned_cols=175  Identities=8%  Similarity=-0.015  Sum_probs=96.0

Q ss_pred             eeeeeCccccEEEEEEecCCCEEEEEeC-C-----CcEEEEECCCCceeeeeCCC--------CceEEEEecCCCEEEEE
Q 009373          151 IDVLYGHTEAVLTVFVLASAKLLFTSGY-D-----SIVRMWHLEDGFSIASSKPL--------GCTIRAVAADKKLLVAG  216 (536)
Q Consensus       151 ~~~l~~h~~~V~~v~~~~~~~~l~sgs~-d-----g~v~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~~l~sg  216 (536)
                      .+.|..+.+.+...+|||||+.||-... +     ..|.+++..+++........        ......++|+++.|+..
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            4567778888999999999998885432 2     24777788777654432211        12345677888877764


Q ss_pred             eCC------CcEEEEEcccCccce------------------ecccCc----------cccc--------ceEEeeCCcc
Q 009373          217 GTD------GFIHCWRAVEVLPHL------------------FDISGS----------EKQN--------TQFRLWEHEG  254 (536)
Q Consensus       217 ~~d------g~i~vwd~~~~~~~~------------------~~~~~~----------~~~~--------~~~~~~~h~~  254 (536)
                      ...      ..+...+...+....                  +.....          ....        .......+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (281)
T d1k32a2         113 DAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMST  192 (281)
T ss_dssp             CTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSS
T ss_pred             EccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCcc
Confidence            322      223444443332110                  000000          0000        0001111222


Q ss_pred             CEEEEEEeCCEEEEEe-c--CCeEEEEeCCCceEeEeee-ccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEE
Q 009373          255 PITSLALDLTRIYSGS-W--DMTVRVWDRALLKCLKVLR-HSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLT  325 (536)
Q Consensus       255 ~v~~l~~~~~~l~s~s-~--dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~  325 (536)
                      ......+.++.++... .  ...|.++|+.+++...... ....+..++++|+.|+...++.|+++|+.+++...
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         193 HVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEE
T ss_pred             ccceeeeeccccceecccccccceEEEeCCCCceEEeecCCCcccccCcCCCCEEEEEeCCEEEEEECCCCCEEE
Confidence            2223333444444433 2  2357777887665443322 33456678899999988888999999998887543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0066  Score=57.58  Aligned_cols=100  Identities=12%  Similarity=0.025  Sum_probs=66.8

Q ss_pred             eCCEEEEEe---------cCCeEEEEeCCCceEeEeee---ccccE--EEEeecCCEEEEecCCcEEEEeCCCCcEEEEE
Q 009373          262 DLTRIYSGS---------WDMTVRVWDRALLKCLKVLR---HSDWV--YGLAPHDTTVASTSGSDVYIWDTNSGCLLTVV  327 (536)
Q Consensus       262 ~~~~l~s~s---------~dg~i~iwd~~~~~~~~~~~---~~~~v--~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~  327 (536)
                      |+++++...         ..+.+.++|+.++.......   ....+  ...+|+|+.++-..++.|.+.+..++..++..
T Consensus        71 D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt  150 (465)
T d1xfda1          71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVV  150 (465)
T ss_dssp             TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEE
T ss_pred             CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEe
Confidence            677766553         35788999999887544332   12222  34569999999999999999999887766655


Q ss_pred             ccccccce-----------------EEEEEeCCCCEEEEEcC-CCcEEEEEc
Q 009373          328 NGAHVGNT-----------------KSLARSHTGDFLFTGGE-DGAIHMYEI  361 (536)
Q Consensus       328 ~~~~~~~i-----------------~~l~~~~~~~~l~tg~~-dg~i~iwd~  361 (536)
                      ..+..+.+                 .++-|||||++||.... +..|..+.+
T Consensus       151 ~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence            43332222                 46779999999988653 333444443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.75  E-value=0.11  Score=46.97  Aligned_cols=246  Identities=15%  Similarity=0.120  Sum_probs=131.6

Q ss_pred             eCCEEEEEe-cCCeEEEEeCCCceEeEeee--ccccEEEEe----ecCCEEEEecC-------------------CcEEE
Q 009373          262 DLTRIYSGS-WDMTVRVWDRALLKCLKVLR--HSDWVYGLA----PHDTTVASTSG-------------------SDVYI  315 (536)
Q Consensus       262 ~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~----~~~~~l~~~~d-------------------~~i~i  315 (536)
                      ||++++... .+..|.+.|+.+.++.+.+.  ....+..+.    ++..++++.+.                   +.+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            667766655 78899999999999877554  344445443    45667766543                   23577


Q ss_pred             EeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCC---------------cEEEEEcccCccc---------cccc
Q 009373          316 WDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDG---------------AIHMYEIINDCTE---------ANVL  371 (536)
Q Consensus       316 ~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg---------------~i~iwd~~~~~~~---------~~~~  371 (536)
                      +|..+++....+.  -.+....+.++++|+++++.+.+.               .+.++++......         ....
T Consensus       178 ID~~tm~V~~QV~--V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDADKWEVAWQVL--VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETTTTEEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecCCceEEEEee--eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            8999988877764  344567889999999998876432               2445554211000         0000


Q ss_pred             e----------eeeccCCCCCeEEEEEcC--CeEEEE-eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccc
Q 009373          372 L----------VATWIPHTGPVNSLAFEF--PWLVSA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGF  438 (536)
Q Consensus       372 ~----------~~~~~~h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (536)
                      .          +..+..-......+..+|  .+++++ ..+.++.|+|+++..........-......+..        .
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e--------l  327 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--------L  327 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB--------C
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc--------c
Confidence            0          000011112234566665  555554 458999999998754432110000000000000        1


Q ss_pred             cccEEEEEecCC--EEEEecCCCeEEEEeCCchhhHHHHHHhhhc-ccc---hh-HHHhhhhccccccCCCCcceeEeec
Q 009373          439 ECNLLSVDIGAD--RIVCGGEEGIVRIWNFSQAFEIERRARALRG-IRL---EN-RMRRRKLQTEMSSKGGRTDQCSVAA  511 (536)
Q Consensus       439 ~~~v~~~~~~~~--~l~sg~~Dg~i~vW~~~~~~~~~~~~~~~~~-~~~---~~-~~~~~~~~~~~~~~g~~~~~~~~~~  511 (536)
                      ...-+.-.|+++  -..|---|..|.-|++........-.....- .+.   +. ........-...|+|+.+.+..--+
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk~s  407 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  407 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecccc
Confidence            111233345555  5666678999999999754222111110000 000   00 0011112235689999999876666


Q ss_pred             ccCCcC
Q 009373          512 KKNPMN  517 (536)
Q Consensus       512 ~~~~~~  517 (536)
                      +++.++
T Consensus       408 kdrfl~  413 (459)
T d1fwxa2         408 KDRFLN  413 (459)
T ss_dssp             TTSSCC
T ss_pred             cccccC
Confidence            666655

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.69  E-value=0.083  Score=48.06  Aligned_cols=203  Identities=11%  Similarity=0.039  Sum_probs=104.8

Q ss_pred             EEEEEecCCCEEEEEeCC-CcEEEEECCCCceeee--eC-CCCceEEEEecCCCEEEEEeCC------CcEEEEEcccCc
Q 009373          162 LTVFVLASAKLLFTSGYD-SIVRMWHLEDGFSIAS--SK-PLGCTIRAVAADKKLLVAGGTD------GFIHCWRAVEVL  231 (536)
Q Consensus       162 ~~v~~~~~~~~l~sgs~d-g~v~iwd~~~~~~~~~--~~-~~~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~~~~  231 (536)
                      ...++.+++.+++.|+.+ ..+.+||..+..-...  .. .......++..++++++.|+.+      ..+.+||..+..
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            455678899999998765 6899999887654322  11 1222344555789999988753      468899987764


Q ss_pred             cceecccCcccccce--EEeeCCccCEEEEEE-eCCEEEEEecCCeEEEEeCCCceEeEeee-------ccc-----cEE
Q 009373          232 PHLFDISGSEKQNTQ--FRLWEHEGPITSLAL-DLTRIYSGSWDMTVRVWDRALLKCLKVLR-------HSD-----WVY  296 (536)
Q Consensus       232 ~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~-----~v~  296 (536)
                      -..............  ............+.. ++..++.+..++.+.++|..+........       ...     .+.
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence            221110000000000  000000111112222 67777778778888888887765433221       000     111


Q ss_pred             EEeecCCEEEEec-C-C-------cEEEEeCCC---CcEEEEEcc--ccccceEEEEEeCCCCEEEEEcCCC--------
Q 009373          297 GLAPHDTTVASTS-G-S-------DVYIWDTNS---GCLLTVVNG--AHVGNTKSLARSHTGDFLFTGGEDG--------  354 (536)
Q Consensus       297 ~~~~~~~~l~~~~-d-~-------~i~i~d~~~---~~~~~~~~~--~~~~~i~~l~~~~~~~~l~tg~~dg--------  354 (536)
                      ....++++++.++ . +       ...+.++..   .........  .....-.+....++|++++.|+.++        
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~  318 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  318 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence            1114566666665 1 1       233333322   111111110  1111223455668999999988531        


Q ss_pred             ---cEEEEEcccC
Q 009373          355 ---AIHMYEIIND  364 (536)
Q Consensus       355 ---~i~iwd~~~~  364 (536)
                         .+.+||..+.
T Consensus       319 ~~~~ve~Ydp~~~  331 (387)
T d1k3ia3         319 PVFTPEIYVPEQD  331 (387)
T ss_dssp             BCCCCEEEEGGGT
T ss_pred             EeceEEEEECCCC
Confidence               4788998776

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.67  E-value=0.3  Score=47.18  Aligned_cols=63  Identities=10%  Similarity=-0.045  Sum_probs=44.9

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCC-----c----eEEEEecCCCEEEEEeCCCcEEEEEcccCcc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLG-----C----TIRAVAADKKLLVAGGTDGFIHCWRAVEVLP  232 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~-----~----~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~  232 (536)
                      +..|+.++.++.|.-.|..+|+.+.++....     .    ....+...+..++.++.|+.+...|..+++.
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~  139 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKV  139 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEecCCCeEEEecccccce
Confidence            4567788889999999999999988763210     0    0011223356788899999999999988853

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.63  E-value=0.28  Score=47.48  Aligned_cols=63  Identities=14%  Similarity=0.229  Sum_probs=42.6

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc---eEEEEe--cCCCEEEEEeC------CCcEEEEEcccCcc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC---TIRAVA--ADKKLLVAGGT------DGFIHCWRAVEVLP  232 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~---~v~~~~--~~~~~l~sg~~------dg~i~vwd~~~~~~  232 (536)
                      +.+++.++.|+.|.-.|.++|+.+..+.....   ......  .-++.+++|..      .|.|.-+|+.+++.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcE
Confidence            34788899999999999999998887642211   000001  12455666643      48899999999874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.59  E-value=0.36  Score=46.65  Aligned_cols=187  Identities=11%  Similarity=0.046  Sum_probs=109.0

Q ss_pred             CCCEEEEEeCCCcEEEEEC-CCCceeeeeCCCCc-------------eEEEEe----cCCCEEEEEeCCCcEEEEEcccC
Q 009373          169 SAKLLFTSGYDSIVRMWHL-EDGFSIASSKPLGC-------------TIRAVA----ADKKLLVAGGTDGFIHCWRAVEV  230 (536)
Q Consensus       169 ~~~~l~sgs~dg~v~iwd~-~~~~~~~~~~~~~~-------------~v~~~~----~~~~~l~sg~~dg~i~vwd~~~~  230 (536)
                      ++.++++++.++.|...|. ++|+.+..+.....             .=.++.    ..+..++.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4555555566778888887 58988887642211             001222    12347889999999999999888


Q ss_pred             ccceecccCcccccceEEeeCCc-cCEE-EEEEeCCEEEEEec------CCeEEEEeCCCceEeEeeeccc---------
Q 009373          231 LPHLFDISGSEKQNTQFRLWEHE-GPIT-SLALDLTRIYSGSW------DMTVRVWDRALLKCLKVLRHSD---------  293 (536)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~h~-~~v~-~l~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~---------  293 (536)
                      +..-......          .+. ..++ .-.+.++.++.++.      .|.|+-+|..+|+.+..+....         
T Consensus       142 ~~~w~~~~~d----------~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~  211 (596)
T d1w6sa_         142 ETVWKVENSD----------IKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLAS  211 (596)
T ss_dssp             CEEEEEECCC----------GGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCT
T ss_pred             ceeccccccc----------cccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccc
Confidence            6321100000          000 0111 11224556666643      4899999999999998764110         


Q ss_pred             --------------------------------cEEEEeecCCEEEEec-C----------------CcEEEEeCCCCcEE
Q 009373          294 --------------------------------WVYGLAPHDTTVASTS-G----------------SDVYIWDTNSGCLL  324 (536)
Q Consensus       294 --------------------------------~v~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~~  324 (536)
                                                      ...++.+...++..+. +                ..+.-.|+.+|+.+
T Consensus       212 ~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~  291 (596)
T d1w6sa_         212 DFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK  291 (596)
T ss_dssp             TTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccc
Confidence                                            0113344445554443 1                23778899999988


Q ss_pred             EEEcccccc--------ceEEEEE-eCCC---CEEEEEcCCCcEEEEEcccCc
Q 009373          325 TVVNGAHVG--------NTKSLAR-SHTG---DFLFTGGEDGAIHMYEIINDC  365 (536)
Q Consensus       325 ~~~~~~~~~--------~i~~l~~-~~~~---~~l~tg~~dg~i~iwd~~~~~  365 (536)
                      -.+...|..        .+.-+.. ..+|   +.++.+..+|.+.++|..+++
T Consensus       292 W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~  344 (596)
T d1w6sa_         292 FGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA  344 (596)
T ss_dssp             EEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence            777532221        1222221 2344   367888999999999988874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.28  E-value=0.52  Score=45.09  Aligned_cols=240  Identities=12%  Similarity=0.071  Sum_probs=125.2

Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeeeeCCCCc--e-EEEEe--cCCCEEEEEeC------CCcEEEEEcccCccceeccc
Q 009373          170 AKLLFTSGYDSIVRMWHLEDGFSIASSKPLGC--T-IRAVA--ADKKLLVAGGT------DGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       170 ~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~--~-v~~~~--~~~~~l~sg~~------dg~i~vwd~~~~~~~~~~~~  238 (536)
                      +..++.+..|+.|.-.|..+|+.+........  . .....  ..+..++.+..      .|.|.-+|.++++..-....
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            45678888999999999999998876643211  0 00001  12334444432      36788999988864211000


Q ss_pred             Cccccc-c---------------eEEee-CCccCE---EEEEEeCCEEEEEec-------------------CCeEEEEe
Q 009373          239 GSEKQN-T---------------QFRLW-EHEGPI---TSLALDLTRIYSGSW-------------------DMTVRVWD  279 (536)
Q Consensus       239 ~~~~~~-~---------------~~~~~-~h~~~v---~~l~~~~~~l~s~s~-------------------dg~i~iwd  279 (536)
                      ...... .               ..... ...+.+   .++....+.++.+..                   ...|...|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            000000 0               00000 001111   122222233332211                   24577789


Q ss_pred             CCCceEeEeee---cccc---------EEEEeecCC---EEEEec-CCcEEEEeCCCCcEEEEEccccccc---------
Q 009373          280 RALLKCLKVLR---HSDW---------VYGLAPHDT---TVASTS-GSDVYIWDTNSGCLLTVVNGAHVGN---------  334 (536)
Q Consensus       280 ~~~~~~~~~~~---~~~~---------v~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---------  334 (536)
                      +++++....++   |..+         ...+..+++   .++.+. +|.+.++|..+++.+..........         
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            99999887765   2211         122233433   445555 7899999999999876543211100         


Q ss_pred             --------------------------eEEEEEeCCCCEEEEEcCC-----------------------------------
Q 009373          335 --------------------------TKSLARSHTGDFLFTGGED-----------------------------------  353 (536)
Q Consensus       335 --------------------------i~~l~~~~~~~~l~tg~~d-----------------------------------  353 (536)
                                                -...+++|+..+++....+                                   
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                                      0134566766666654432                                   


Q ss_pred             -CcEEEEEcccCccccccceeeeccCCCCCe--EEEEEcCCeEEEEeCCCcEEEEECCcccccCCC
Q 009373          354 -GAIHMYEIINDCTEANVLLVATWIPHTGPV--NSLAFEFPWLVSAAGDGKLSLIDVRKLLRSGRP  416 (536)
Q Consensus       354 -g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v--~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~  416 (536)
                       |.+.-||+.+++      .+-... ...+.  -.|+-.+.++++|+.||.++.+|.++++..++.
T Consensus       437 ~G~l~A~D~~tGk------~~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         437 SGALLAWDPVKQK------AAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             EEEEEEEETTTTE------EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccceEEEeCCCCe------Eeeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence             345555555552      111110 00111  124445688899999999999999998766654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.26  E-value=0.39  Score=43.35  Aligned_cols=188  Identities=12%  Similarity=0.007  Sum_probs=106.2

Q ss_pred             cCCCEEEEEe-CCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEE----eCCEEEEEecC----------
Q 009373          208 ADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLAL----DLTRIYSGSWD----------  272 (536)
Q Consensus       208 ~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~----~~~~l~s~s~d----------  272 (536)
                      +||+++++.. .+++|.+.|+.+.+.           ..+..+ .....+..+..    +..+++.++.+          
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt-----------~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~  164 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKC-----------DAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN  164 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEE-----------EEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred             cceeEEEEEcCCCceEEEEECcceee-----------eEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence            4677777665 678899999876531           111112 22333444443    23455555542          


Q ss_pred             --------CeEEEEeCCCceEeEeeecccc--EEEEeecCCEEEEec-CC------------------------------
Q 009373          273 --------MTVRVWDRALLKCLKVLRHSDW--VYGLAPHDTTVASTS-GS------------------------------  311 (536)
Q Consensus       273 --------g~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~l~~~~-d~------------------------------  311 (536)
                              +.+.+.|..+.+....+.-...  -..+.++|+++++.+ +.                              
T Consensus       165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~  244 (459)
T d1fwxa2         165 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  244 (459)
T ss_dssp             TTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             ccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhh
Confidence                    2367789998888877763333  345558888888765 31                              


Q ss_pred             --------cEEEEeCCCC---cEEEEEccccccceEEEEEeCCCCEEEEEc-CCCcEEEEEcccCccc------ccccee
Q 009373          312 --------DVYIWDTNSG---CLLTVVNGAHVGNTKSLARSHTGDFLFTGG-EDGAIHMYEIINDCTE------ANVLLV  373 (536)
Q Consensus       312 --------~i~i~d~~~~---~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~------~~~~~~  373 (536)
                              .+.+.|.+..   ..+..+.  -......+.++|||+++++++ .+.++.|+|++.-...      ..-..+
T Consensus       245 ~Gk~~eingV~VVD~~~~~~~~v~~yIP--VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         245 AGDYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             HTCSEEETTEEEEECSGG--CSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             cCCcEEeCCceeecccccCCcceeEEEe--cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                    1233343321   1122221  223455788999999877665 5889999999642110      000111


Q ss_pred             eeccCCCCCeEEEEEcCC-eEE-EEeCCCcEEEEECCcc
Q 009373          374 ATWIPHTGPVNSLAFEFP-WLV-SAAGDGKLSLIDVRKL  410 (536)
Q Consensus       374 ~~~~~h~~~v~~l~~~~~-~l~-s~s~dg~i~vwd~~~~  410 (536)
                      ... ...-....-+|+++ ..+ |---|..|.-|++...
T Consensus       323 ~e~-elglgPLht~fd~~g~aytslfids~v~kw~~~~~  360 (459)
T d1fwxa2         323 AEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA  360 (459)
T ss_dssp             ECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred             eec-ccCcCccccccCCCceEEEEeeccceEEEEecchh
Confidence            111 12334456678763 333 3346999999998754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.42  Score=42.85  Aligned_cols=147  Identities=10%  Similarity=-0.006  Sum_probs=86.5

Q ss_pred             CCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEE
Q 009373          199 LGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVW  278 (536)
Q Consensus       199 ~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iw  278 (536)
                      .....++++....++++|+.++ +.|-.+..-..................    -..|..++|+++.++.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~----ip~v~~vafs~d~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE----IPDVIFVCFHGDQVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE----CTTEEEEEEETTEEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC----CCCeEEEEeeCCEEEEE-eCCCEEEE
Confidence            3456778888888888888775 556664322111110011111111111    23588899988876665 45678888


Q ss_pred             eCCCceEeEeee-ccccEEEEeecCCEEEEec-CCcEEEEeCCCCcEEEEEcc----ccccceEEEEEeCCCCEEEEEc
Q 009373          279 DRALLKCLKVLR-HSDWVYGLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNG----AHVGNTKSLARSHTGDFLFTGG  351 (536)
Q Consensus       279 d~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~----~~~~~i~~l~~~~~~~~l~tg~  351 (536)
                      +..+........ ...++..+.+....++... ++.+.++++..++.......    .-.+.+.+++|++.|..++++.
T Consensus       111 ~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         111 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             EeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            876644333332 4556777776666555555 89999999998864432211    1234567777777777777663

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.81  Score=38.97  Aligned_cols=214  Identities=11%  Similarity=0.046  Sum_probs=96.7

Q ss_pred             CcEEEEECCCCc--eeeeeCCCCceEEEEecCCCEEEEEeCC---------CcEEEEEcccCccceecccCcccccceEE
Q 009373          180 SIVRMWHLEDGF--SIASSKPLGCTIRAVAADKKLLVAGGTD---------GFIHCWRAVEVLPHLFDISGSEKQNTQFR  248 (536)
Q Consensus       180 g~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~l~sg~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  248 (536)
                      ..+.+||+++++  .+..+............++.+++.|+..         ..+.+||..+.....           ...
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~-----------~~~   87 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP-----------CAP   87 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEE-----------CCC
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccc-----------ccc
Confidence            357899998874  2222322222222333466677766632         356677765542111           000


Q ss_pred             eeCCccCEEEEEEeCCEEEEEecCCe-----EEEEeCCCceEeEeeecc---ccEEEEeecCCEEEEec-C-----CcEE
Q 009373          249 LWEHEGPITSLALDLTRIYSGSWDMT-----VRVWDRALLKCLKVLRHS---DWVYGLAPHDTTVASTS-G-----SDVY  314 (536)
Q Consensus       249 ~~~h~~~v~~l~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~-d-----~~i~  314 (536)
                      +......-.+...++..++.++.++.     +..+|..+..........   .....+...+.+++.++ +     ..+.
T Consensus        88 ~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          88 MSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             CSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE
T ss_pred             ccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEE
Confidence            11111111233335555555554443     344666555433222111   11112224455555544 2     3588


Q ss_pred             EEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccCccccccceeeeccCCCCCeEEEEEc
Q 009373          315 IWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFE  389 (536)
Q Consensus       315 i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~  389 (536)
                      .||..+.+....-.........+.... .+.+++.|+.+     .....+|..+...    ..+.....-.....++.+.
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~r~~~~~~~~~  242 (288)
T d1zgka1         168 CYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETW----TFVAPMKHRRSALGITVHQ  242 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEET
T ss_pred             Eeeccccccccccccccccccccccce-eeeEEEecCccccccccceeeeeecceee----ecccCccCcccceEEEEEC
Confidence            899887654432211111111222222 35566666544     2466777665521    1111111111222334455


Q ss_pred             CCeEEEEeCCC-----cEEEEECCc
Q 009373          390 FPWLVSAAGDG-----KLSLIDVRK  409 (536)
Q Consensus       390 ~~~l~s~s~dg-----~i~vwd~~~  409 (536)
                      +.+++.|+.++     .|.+||+.+
T Consensus       243 ~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         243 GRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CEEEEEecCCCCeecceEEEEECCC
Confidence            66777776543     377888875

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.91  E-value=0.94  Score=38.49  Aligned_cols=183  Identities=13%  Similarity=0.012  Sum_probs=94.6

Q ss_pred             ceEEEEecCCCEEEEEeCCCcEEEEEcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeC
Q 009373          201 CTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDR  280 (536)
Q Consensus       201 ~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~  280 (536)
                      ..|..++......+.-. ||.|..|-.....+.             -.-......|..++......+.- .|+.+..|..
T Consensus        26 ~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQl-------------G~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~   90 (273)
T d1jtdb_          26 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQL-------------TMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGG   90 (273)
T ss_dssp             SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTT-------------SCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEEC
T ss_pred             CCcEEEEccCCEEEEEE-CCEEEEEeCCCCCce-------------eeeecccccceEEecCCCceeee-eeeeeeccCC
Confidence            45777776555555545 899999975443210             00011233456666633333333 4899999975


Q ss_pred             CCceEeE-eeeccccEEEEeecCCEEEEecCCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEE
Q 009373          281 ALLKCLK-VLRHSDWVYGLAPHDTTVASTSGSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMY  359 (536)
Q Consensus       281 ~~~~~~~-~~~~~~~v~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iw  359 (536)
                      ...-... .......+..+.......+...|+.+..|........... ......|..++-.   .+.+....++.++.|
T Consensus        91 ~~~gq~~~~~~~~~~~~~i~~~~~~~~~~~dg~v~~~g~~~~~~~~~~-~~~~~~v~~~~~~---~~~~~~~~~g~~~~~  166 (273)
T d1jtdb_          91 NEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVP-AEAQSGVTALDGG---VYTALAVKNGGVIAW  166 (273)
T ss_dssp             CTTSTTCCCGGGGSSCCEEEEETTEEEEEETTEEEEEECCTTSTTSCC-GGGGSSEEEEEEC---SSEEEEEETTEEEEE
T ss_pred             CcceeeccccccccceeEEeeecccccccccccceecccCCCCceeee-ccCCceEEEEecc---ceeeeeecccceeEe
Confidence            4321111 1112334445554444444445888888865433221111 1122344444332   222333357888888


Q ss_pred             EcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCc
Q 009373          360 EIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRK  409 (536)
Q Consensus       360 d~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~  409 (536)
                      -......      ..........|..|+....+.+.-. ||.|+-|=...
T Consensus       167 G~~~~g~------~~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~  209 (273)
T d1jtdb_         167 GDNYFGQ------TTVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNR  209 (273)
T ss_dssp             ECCTTST------TSCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred             ecccCCc------ccccccccCCccceeccceeeEEEe-cCcEEEcCCCC
Confidence            7654421      1111223457888877665544444 89999997544

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.77  E-value=1  Score=38.30  Aligned_cols=218  Identities=9%  Similarity=0.046  Sum_probs=121.8

Q ss_pred             EEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe-cCCCEEEEEeCCCcEEEEEcccCccceecccCccc
Q 009373          164 VFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA-ADKKLLVAGGTDGFIHCWRAVEVLPHLFDISGSEK  242 (536)
Q Consensus       164 v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~  242 (536)
                      .-.+|..+.||--+ ..++.+||+++.+.++.+.-.. +|.-+. .+.+.|+-.+ +..|+-|+++....          
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~----------  134 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQ----------  134 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSSEEEEEC-SSEEEEEESSSSCC----------
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCCEEEEEc-CCceEEEcccCCCC----------
Confidence            33678888887766 5689999999999988775543 344444 3444444443 35799999854321          


Q ss_pred             ccceEEeeCCc----cCEEEEEE--eCCEEEEEe-------cCCeEEEEeCCCceEeEeeeccccEEEEeec----CC-E
Q 009373          243 QNTQFRLWEHE----GPITSLAL--DLTRIYSGS-------WDMTVRVWDRALLKCLKVLRHSDWVYGLAPH----DT-T  304 (536)
Q Consensus       243 ~~~~~~~~~h~----~~v~~l~~--~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~----~~-~  304 (536)
                        +...+..|.    ..|.....  +.+.++..+       -.|.+.+|..+.......-.|...-..+..+    .. +
T Consensus       135 --P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~l  212 (327)
T d1utca2         135 --PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTL  212 (327)
T ss_dssp             --CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEE
T ss_pred             --chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceE
Confidence              222233332    23333333  233333211       1367888988765433222254444444311    11 2


Q ss_pred             EEEec----CCcEEEEeCCCCc---E-----EEEEc---cccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccc
Q 009373          305 VASTS----GSDVYIWDTNSGC---L-----LTVVN---GAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEAN  369 (536)
Q Consensus       305 l~~~~----d~~i~i~d~~~~~---~-----~~~~~---~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~  369 (536)
                      ++.+.    .+++++.++....   .     ...+.   ....+-..++..++.-..+..-+.-|.+++||+.++     
T Consensus       213 f~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg-----  287 (327)
T d1utca2         213 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-----  287 (327)
T ss_dssp             EEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-----
T ss_pred             EEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc-----
Confidence            22222    3678998886521   1     11111   122344667888988888999999999999999999     


Q ss_pred             cceeeeccCCCCCeEEEEEcC--CeEEEEeCCCcE
Q 009373          370 VLLVATWIPHTGPVNSLAFEF--PWLVSAAGDGKL  402 (536)
Q Consensus       370 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i  402 (536)
                       .++..-+-...+|..-+-+.  .-+++...+|.|
T Consensus       288 -t~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         288 -TCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             -CEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             -cEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence             45544333344444333321  344444455544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.64  E-value=0.15  Score=49.28  Aligned_cols=77  Identities=12%  Similarity=0.060  Sum_probs=53.8

Q ss_pred             CeEEEEeCCCceEeEeeeccccEE--EEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EEE
Q 009373          273 MTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FLF  348 (536)
Q Consensus       273 g~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~  348 (536)
                      |.+.-||+.+++.+.......+..  .++..+.++++++ |+.++.+|.++|+.+-.+..+....-.-+.|..+|+ +++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~  536 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence            678999999999998887544332  3556777787777 999999999999999888643221111244455675 444


Q ss_pred             E
Q 009373          349 T  349 (536)
Q Consensus       349 t  349 (536)
                      .
T Consensus       537 v  537 (573)
T d1kb0a2         537 V  537 (573)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=94.58  E-value=1.1  Score=37.91  Aligned_cols=221  Identities=15%  Similarity=0.031  Sum_probs=112.0

Q ss_pred             ccEEEEEEecCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEEEcccCccceeccc
Q 009373          159 EAVLTVFVLASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCWRAVEVLPHLFDIS  238 (536)
Q Consensus       159 ~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  238 (536)
                      ..|..|+--  ..+.+.-. ||.|..|-....-.+-.-......+..++......+.- .||.+..|.........    
T Consensus        26 ~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~----   97 (273)
T d1jtdb_          26 SGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTT----   97 (273)
T ss_dssp             SSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTC----
T ss_pred             CCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeec----
Confidence            457777653  33333334 89999997654432221112223444555433333332 48999999753321100    


Q ss_pred             CcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeEee-eccccEEEEeecCCEEEEecCCcEEEEe
Q 009373          239 GSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLKVL-RHSDWVYGLAPHDTTVASTSGSDVYIWD  317 (536)
Q Consensus       239 ~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~d~~i~i~d  317 (536)
                               ........+..++......+.. .|+.+..|........... .....|..+......++...++.+..|-
T Consensus        98 ---------~~~~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G  167 (273)
T d1jtdb_          98 ---------VPAEARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWG  167 (273)
T ss_dssp             ---------CCGGGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEE
T ss_pred             ---------cccccccceeEEeeeccccccc-ccccceecccCCCCceeeeccCCceEEEEeccceeeeeecccceeEee
Confidence                     0001123344555544444433 5899999974432221111 1334556666555566666688888886


Q ss_pred             CCCCcEEEEEccccccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEe
Q 009373          318 TNSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA  397 (536)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s  397 (536)
                      .......... ......|..++....  ..+.- .||.|+.|=........  .+    ......|..|+-...+.+.- 
T Consensus       168 ~~~~g~~~~~-~~~~~~v~~Is~G~~--h~~~l-~dG~v~~WG~n~~Gql~--~~----~~~~~~v~~I~~G~~~~~~l-  236 (273)
T d1jtdb_         168 DNYFGQTTVP-AEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTT--VP----TEALSGVSAIASGEWYSLAL-  236 (273)
T ss_dssp             CCTTSTTSCC-GGGSSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTC--CC----GGGGSSCCEEEECSSCEEEE-
T ss_pred             cccCCccccc-ccccCCccceeccce--eeEEE-ecCcEEEcCCCCCCccC--CC----ccCCCCcEEEEeCcceEEEE-
Confidence            6543222111 124456777765432  22222 37999988654432111  11    11223567777655444433 


Q ss_pred             CCCcEEEEECC
Q 009373          398 GDGKLSLIDVR  408 (536)
Q Consensus       398 ~dg~i~vwd~~  408 (536)
                      .||.|..|--.
T Consensus       237 ~~g~v~~WG~~  247 (273)
T d1jtdb_         237 KNGKVIAWGSS  247 (273)
T ss_dssp             ETTEEEEESTT
T ss_pred             ECCEEEEECCC
Confidence            48999999644

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.38  E-value=0.26  Score=47.64  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             CCeEEEEeCCCceEeEeeeccccEE--EEeecCCEEEEec-CCcEEEEeCCCCcEEEEEccccccceEEEEEeCCCC-EE
Q 009373          272 DMTVRVWDRALLKCLKVLRHSDWVY--GLAPHDTTVASTS-GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSHTGD-FL  347 (536)
Q Consensus       272 dg~i~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l  347 (536)
                      .|.+.-+|+.+++.........++.  .++..+.++++++ |+.++.+|.++|+.+-.+..+....-.-+.|..+|+ ++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            4789999999999998887444443  2456677777777 999999999999999888754333333356667785 55


Q ss_pred             EE
Q 009373          348 FT  349 (536)
Q Consensus       348 ~t  349 (536)
                      ++
T Consensus       545 ~i  546 (582)
T d1flga_         545 GV  546 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.36  E-value=1.2  Score=37.46  Aligned_cols=199  Identities=14%  Similarity=0.057  Sum_probs=112.7

Q ss_pred             eeCCccCEEEEEEe--CCEEEEE-ecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecCCEEE-Eec-CCcEEEEeCCC
Q 009373          249 LWEHEGPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHDTTVA-STS-GSDVYIWDTNS  320 (536)
Q Consensus       249 ~~~h~~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~l~-~~~-d~~i~i~d~~~  320 (536)
                      +..+...+..++||  .+.++.. ..++.|+..++........+. ....+.+++  +-+..|. +.. .+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            33445567788884  4555554 466788888887655444443 224556665  3355544 444 57899999876


Q ss_pred             CcEEEEEccccccceEEEEEeCCCCEEEEEcCC-CcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEEEE-
Q 009373          321 GCLLTVVNGAHVGNTKSLARSHTGDFLFTGGED-GAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLVSA-  396 (536)
Q Consensus       321 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~-  396 (536)
                      ......+. .....+..++++|...+++..... +..+|+.......    .........-...++|++++  +.|+-+ 
T Consensus       111 ~~~~~l~~-~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~----~~~~i~~~~~~~P~glaiD~~~~~lYw~d  185 (263)
T d1npea_         111 TQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT----NRRILAQDNLGLPNGLTFDAFSSQLCWVD  185 (263)
T ss_dssp             CSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC----CCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             ceEEEEec-ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC----CceeeeeecccccceEEEeecCcEEEEEe
Confidence            65433332 234678899999987776654322 3334554332211    11111222334668899974  566555 


Q ss_pred             eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhH
Q 009373          397 AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       397 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      ...+.|...|+......                   ..+.+... -.+++..++ ...+-...+.|..-|..+++.+
T Consensus       186 ~~~~~I~~~~~~g~~~~-------------------~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~  242 (263)
T d1npea_         186 AGTHRAECLNPAQPGRR-------------------KVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAISKEM  242 (263)
T ss_dssp             TTTTEEEEEETTEEEEE-------------------EEEECCCS-EEEEEEETTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCCeE-------------------EEECCCCC-cEEEEEECCEEEEEECCCCEEEEEECCCCccc
Confidence            45678888888653111                   01111111 235555566 4455556788888888876543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.26  E-value=1.3  Score=37.32  Aligned_cols=184  Identities=8%  Similarity=-0.052  Sum_probs=104.8

Q ss_pred             CCccceeeeeCccccEEEEEEecCCCEEE-EEeCCCcEEEEECCCCceeeeeCCC--CceEEEEecCCCEEEEEeCC-Cc
Q 009373          146 LGRYSIDVLYGHTEAVLTVFVLASAKLLF-TSGYDSIVRMWHLEDGFSIASSKPL--GCTIRAVAADKKLLVAGGTD-GF  221 (536)
Q Consensus       146 ~~~~~~~~l~~h~~~V~~v~~~~~~~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~l~sg~~d-g~  221 (536)
                      .|......+..-...+.++++..-+..|+ +-...+.|.+.++............  ...-+++.|...+++..... +.
T Consensus        66 ~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~  145 (263)
T d1npea_          66 HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN  145 (263)
T ss_dssp             SSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred             ccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCC
Confidence            34444444444446788999987565555 5556789999998765432222222  22334555666655544322 23


Q ss_pred             EEEE--EcccCccceecccCcccccceEEeeCCccCEEEEEEe--CCEEEEE-ecCCeEEEEeCCCceEeEeeeccccEE
Q 009373          222 IHCW--RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALD--LTRIYSG-SWDMTVRVWDRALLKCLKVLRHSDWVY  296 (536)
Q Consensus       222 i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~v~  296 (536)
                      .+|+  ++....             ........-.....+++|  .+.|+.+ ...+.|...|+........+.......
T Consensus       146 ~~I~r~~~dG~~-------------~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~  212 (263)
T d1npea_         146 PKIETSHMDGTN-------------RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPF  212 (263)
T ss_dssp             CEEEEEETTSCC-------------CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEE
T ss_pred             cEEEEecCCCCC-------------ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcE
Confidence            3344  332211             111122233456788885  5666555 467889999987655544444333446


Q ss_pred             EEeecCCEEEEec--CCcEEEEeCCCCcEEEEEccccccceEEEEEeC
Q 009373          297 GLAPHDTTVASTS--GSDVYIWDTNSGCLLTVVNGAHVGNTKSLARSH  342 (536)
Q Consensus       297 ~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~i~~l~~~~  342 (536)
                      +++.++..|..+.  .+.|...|..+++.+..+..........+++.+
T Consensus       213 ~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         213 AVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             EEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            7775556555553  688999999999888777533444555665544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.14  E-value=2.1  Score=39.10  Aligned_cols=238  Identities=11%  Similarity=0.020  Sum_probs=117.0

Q ss_pred             CccccEEEEEEecCCCEEEEE-eCC----CcEEEEECCCCceeeee-CCCCceEEEEecCCCEEEEEeCC----------
Q 009373          156 GHTEAVLTVFVLASAKLLFTS-GYD----SIVRMWHLEDGFSIASS-KPLGCTIRAVAADKKLLVAGGTD----------  219 (536)
Q Consensus       156 ~h~~~V~~v~~~~~~~~l~sg-s~d----g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~sg~~d----------  219 (536)
                      ++.-.+...+++|++++++-+ +.+    ..++++|+.+++.+... ......-.++.+++..|+-...+          
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccc
Confidence            344445567789999988743 333    46999999999876532 21112334567777766543322          


Q ss_pred             ------CcEEEEEcccCccceecccCcccccceEEeeCC--ccCEEEEEE--eCCEEEEEec---CCeEEEE--eCCCce
Q 009373          220 ------GFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEH--EGPITSLAL--DLTRIYSGSW---DMTVRVW--DRALLK  284 (536)
Q Consensus       220 ------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~---dg~i~iw--d~~~~~  284 (536)
                            ..|..+.+.+..           ......+...  ...+..+..  ++++++....   +....+|  |+....
T Consensus       202 ~~~~~~~~v~~h~lgt~~-----------~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~  270 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQ-----------SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES  270 (430)
T ss_dssp             CCCCCCCEEEEEETTSCG-----------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred             cccCCcceEEEEECCCCc-----------cccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcc
Confidence                  246666665432           1122222222  233445544  6666553322   3334444  433211


Q ss_pred             E--------eEeee-ccccEEEEeecCC-EEEEec----CCcEEEEeCCCCcE--EEEEccccccceEEEEEeCCCCEEE
Q 009373          285 C--------LKVLR-HSDWVYGLAPHDT-TVASTS----GSDVYIWDTNSGCL--LTVVNGAHVGNTKSLARSHTGDFLF  348 (536)
Q Consensus       285 ~--------~~~~~-~~~~v~~~~~~~~-~l~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~~i~~l~~~~~~~~l~  348 (536)
                      .        ...+. ......-+...+. +++...    ++.|...++.....  ...+...+...+..-.+...+.+|+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lv  350 (430)
T d1qfma1         271 NGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV  350 (430)
T ss_dssp             SSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEE
T ss_pred             cccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEE
Confidence            1        11111 2222333443444 444333    25677777765432  2333223444454444444556665


Q ss_pred             EEc-CCC--cEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--C-eEEEEeC---CCcEEEEECCcc
Q 009373          349 TGG-EDG--AIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--P-WLVSAAG---DGKLSLIDVRKL  410 (536)
Q Consensus       349 tg~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~-~l~s~s~---dg~i~vwd~~~~  410 (536)
                      ... .++  .|+++++.++.      .........+.|..+..++  + ..++.++   =.+++-+|+.++
T Consensus       351 l~~~~~~~~~l~v~~~~~~~------~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~  415 (430)
T d1qfma1         351 LCYLHDVKNTLQLHDLATGA------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (430)
T ss_dssp             EEEEETTEEEEEEEETTTCC------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EEEEcCCEeEEEEEECCCCc------EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence            554 554  47888887763      2222233344555554432  2 3333222   157888888764

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.09  E-value=2.1  Score=35.98  Aligned_cols=216  Identities=12%  Similarity=-0.018  Sum_probs=118.7

Q ss_pred             CcEEEEECCCCceeeeeCCCCceEEEE--ecCCCEEEEEe-CCCcEEEEEcccCccceecccCcccccceEEeeCCccCE
Q 009373          180 SIVRMWHLEDGFSIASSKPLGCTIRAV--AADKKLLVAGG-TDGFIHCWRAVEVLPHLFDISGSEKQNTQFRLWEHEGPI  256 (536)
Q Consensus       180 g~v~iwd~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  256 (536)
                      ..|+-.++++.....-..... .+.++  .+..+.|+-.. ..+.|...++....         ...............+
T Consensus        10 ~~I~~~~l~~~~~~~~~~~~~-~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~---------~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIPNLR-NVVALDTEVASNRIYWSDLSQRMICSTQLDRAH---------GVSSYDTVISRDIQAP   79 (266)
T ss_dssp             SSEEEEETTSCCCEEEECSCS-SEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCC
T ss_pred             CeEEEEECCCCcceeeeCCCC-ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCC---------CCcceEEEEeCCCCCc
Confidence            357878887655433333322 33344  45555555443 45556655543211         0001111122223445


Q ss_pred             EEEEEe--CCEEE-EEecCCeEEEEeCCCceEeEeee-ccccEEEEe--ecC-CEEEEec--CCcEEEEeCCCCcEEEEE
Q 009373          257 TSLALD--LTRIY-SGSWDMTVRVWDRALLKCLKVLR-HSDWVYGLA--PHD-TTVASTS--GSDVYIWDTNSGCLLTVV  327 (536)
Q Consensus       257 ~~l~~~--~~~l~-s~s~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~--~~~-~~l~~~~--d~~i~i~d~~~~~~~~~~  327 (536)
                      ..+++|  ++.|+ +-...+.|.+.++........+. .......+.  |.. .++++..  .+.|.-.++.........
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            566763  44444 44566789999988665544444 334455555  544 4444433  356777777654443333


Q ss_pred             ccccccceEEEEEeCCCCEEEEE-cCCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcCCeEEEEe-CCCcEEEE
Q 009373          328 NGAHVGNTKSLARSHTGDFLFTG-GEDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEFPWLVSAA-GDGKLSLI  405 (536)
Q Consensus       328 ~~~~~~~i~~l~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s-~dg~i~vw  405 (536)
                      . ..-..++++++++.++.|..+ ...+.|...++.....    ..+...........+|++..++|+-+. .++.|...
T Consensus       160 ~-~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~----~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~  234 (266)
T d1ijqa1         160 T-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR----KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSA  234 (266)
T ss_dssp             C-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred             c-cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE----EEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEE
Confidence            2 244567899999877765554 5678898888865421    222222333345678888887777665 56778777


Q ss_pred             ECCcc
Q 009373          406 DVRKL  410 (536)
Q Consensus       406 d~~~~  410 (536)
                      +..++
T Consensus       235 ~~~~g  239 (266)
T d1ijqa1         235 NRLTG  239 (266)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            76654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=3.9  Score=34.22  Aligned_cols=198  Identities=14%  Similarity=0.026  Sum_probs=107.2

Q ss_pred             CCccCEEEEEEe--CCEEEEEe-cCCeEEEEeCCCceE---e-Eeee-ccccEEEEe--ecCCEEEEe-c-CCcEEEEeC
Q 009373          251 EHEGPITSLALD--LTRIYSGS-WDMTVRVWDRALLKC---L-KVLR-HSDWVYGLA--PHDTTVAST-S-GSDVYIWDT  318 (536)
Q Consensus       251 ~h~~~v~~l~~~--~~~l~s~s-~dg~i~iwd~~~~~~---~-~~~~-~~~~v~~~~--~~~~~l~~~-~-d~~i~i~d~  318 (536)
                      .....+.+++|+  .+.++-.. .++.|.-.++.....   . ..+. ....+.+++  +.+..|..+ . .+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            345567788884  45665554 456676666543221   1 1111 223344444  445544444 4 578999999


Q ss_pred             CCCcEEEEEccccccceEEEEEeCCCCEEEEEc--CCCcEEEEEcccCccccccceeeeccCCCCCeEEEEEcC--CeEE
Q 009373          319 NSGCLLTVVNGAHVGNTKSLARSHTGDFLFTGG--EDGAIHMYEIINDCTEANVLLVATWIPHTGPVNSLAFEF--PWLV  394 (536)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~  394 (536)
                      .......... ........++++|...+|....  ..+.|.-.++....      ........-...++|++++  +.|+
T Consensus       107 ~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~------~~~l~~~~~~~p~gl~iD~~~~~lY  179 (266)
T d1ijqa1         107 KGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLY  179 (266)
T ss_dssp             TSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC------EEEEECSSCSCEEEEEEETTTTEEE
T ss_pred             CCceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc------eecccccccceeeEEEeeccccEEE
Confidence            8766544443 3456788999999766655443  33456666654431      1111223345668888875  5555


Q ss_pred             EE-eCCCcEEEEECCcccccCCCCCCCceeeEEeeCCCeeeeccccccEEEEEecCC-EEEEecCCCeEEEEeCCchhhH
Q 009373          395 SA-AGDGKLSLIDVRKLLRSGRPTSGKRVSRVIEVEPPQRMLHGFECNLLSVDIGAD-RIVCGGEEGIVRIWNFSQAFEI  472 (536)
Q Consensus       395 s~-s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~sg~~Dg~i~vW~~~~~~~~  472 (536)
                      -+ ...+.|...|+......          .+..       .......-.+++..++ .+.+-..++.|...+..++...
T Consensus       180 w~d~~~~~I~~~~~dG~~~~----------~~~~-------~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~  242 (266)
T d1ijqa1         180 WVDSKLHSISSIDVNGGNRK----------TILE-------DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  242 (266)
T ss_dssp             EEETTTTEEEEEETTSCSCE----------EEEE-------CTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             EecCCcCEEEEEECCCCCEE----------EEEe-------CCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcce
Confidence            55 45678888887642110          0000       0111123456666666 4445556788888887776533

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.93  E-value=7.9  Score=33.74  Aligned_cols=142  Identities=13%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             CEEEEEecCCeEEEEeCCCceEeEeeeccccEEEEe------ecC--CEEEEec--C---CcEEEEeCCC-CcEEEEEcc
Q 009373          264 TRIYSGSWDMTVRVWDRALLKCLKVLRHSDWVYGLA------PHD--TTVASTS--G---SDVYIWDTNS-GCLLTVVNG  329 (536)
Q Consensus       264 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~v~~~~------~~~--~~l~~~~--d---~~i~i~d~~~-~~~~~~~~~  329 (536)
                      ..++.....+-|.+||+. |+.+..+. .+.++.+.      ..+  ..++.++  +   .+|.+|.+.. ...+..+..
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~-~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYH-TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECC-SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecc-cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            456666777779999995 77776654 34445444      122  2344444  2   2577776642 233333321


Q ss_pred             c------cccceEEEEE--eCC-CC-EEEEEcCCCcEEEEEcccCcc-ccccceeeeccCCCCCeEEEEEcC--CeEEEE
Q 009373          330 A------HVGNTKSLAR--SHT-GD-FLFTGGEDGAIHMYEIINDCT-EANVLLVATWIPHTGPVNSLAFEF--PWLVSA  396 (536)
Q Consensus       330 ~------~~~~i~~l~~--~~~-~~-~l~tg~~dg~i~iwd~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~  396 (536)
                      .      ....++.+|+  ++. |. ++++...+|.+..|.+..... ......++.+.. ...+-++.++.  ..|+.+
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~Lyis  197 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIA  197 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEe
Confidence            1      1124677776  554 43 567778899999998854321 122244555533 44678888876  689998


Q ss_pred             eCCCcEEEEECC
Q 009373          397 AGDGKLSLIDVR  408 (536)
Q Consensus       397 s~dg~i~vwd~~  408 (536)
                      -.+.-|..++..
T Consensus       198 EE~~Giw~~~a~  209 (353)
T d1h6la_         198 EEDEAIWKFSAE  209 (353)
T ss_dssp             ETTTEEEEEESS
T ss_pred             cCccceEEEEec
Confidence            887666555543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.05  E-value=8.8  Score=33.31  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=26.3

Q ss_pred             cccceEEEEEeCCCCEEEE-EcCCCcEEEEEcccC
Q 009373          331 HVGNTKSLARSHTGDFLFT-GGEDGAIHMYEIIND  364 (536)
Q Consensus       331 ~~~~i~~l~~~~~~~~l~t-g~~dg~i~iwd~~~~  364 (536)
                      .-...+.++++|++++|++ -+..+.|++|++...
T Consensus       204 ~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         204 GFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            3456889999999986655 456788999998755

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.26  E-value=12  Score=33.04  Aligned_cols=251  Identities=13%  Similarity=0.024  Sum_probs=135.5

Q ss_pred             cccEEEEEEecCCCEEEEEeCCCcEEEEECCC-Cc-----------eeeeeCCCCceEEEEecCCCEEEEEeCCCcEEEE
Q 009373          158 TEAVLTVFVLASAKLLFTSGYDSIVRMWHLED-GF-----------SIASSKPLGCTIRAVAADKKLLVAGGTDGFIHCW  225 (536)
Q Consensus       158 ~~~V~~v~~~~~~~~l~sgs~dg~v~iwd~~~-~~-----------~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~vw  225 (536)
                      ...|..|+..  +.+.+.-..||.|..|=... |+           .+.........+.+++......+.-..+|.|..|
T Consensus        46 ~~~i~~ia~G--~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~w  123 (401)
T d1a12a_          46 PEDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW  123 (401)
T ss_dssp             SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred             CCCeEEEEeC--CCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecccccceeeccccccceec
Confidence            3457777654  44556667899999995432 21           1111122344567777677777888899999999


Q ss_pred             EcccCccceecccCcccccceEEeeCCccCEEEEEEeCCEEEEEecCCeEEEEeCCCceEeE------------------
Q 009373          226 RAVEVLPHLFDISGSEKQNTQFRLWEHEGPITSLALDLTRIYSGSWDMTVRVWDRALLKCLK------------------  287 (536)
Q Consensus       226 d~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~iwd~~~~~~~~------------------  287 (536)
                      -.............................|..++......+....+|.+..|-......+.                  
T Consensus       124 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~  203 (401)
T d1a12a_         124 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERL  203 (401)
T ss_dssp             ECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHH
T ss_pred             cccccccccccccCCccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccc
Confidence            65332111111111111122223334456788888877777778889999999643211000                  


Q ss_pred             ----ee-------eccccEEEEee-cCCEEEEecCCcEEEEeCCCC----------cEEEEEccc-cccceEEEEEeCCC
Q 009373          288 ----VL-------RHSDWVYGLAP-HDTTVASTSGSDVYIWDTNSG----------CLLTVVNGA-HVGNTKSLARSHTG  344 (536)
Q Consensus       288 ----~~-------~~~~~v~~~~~-~~~~l~~~~d~~i~i~d~~~~----------~~~~~~~~~-~~~~i~~l~~~~~~  344 (536)
                          ..       .....+..++. ....++...++.+..|.....          ......... .......+......
T Consensus       204 ~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~  283 (401)
T d1a12a_         204 LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQ  283 (401)
T ss_dssp             HSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECS
T ss_pred             cccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEEEeeec
Confidence                00       01224555553 334455555888888865431          111111100 11111122333344


Q ss_pred             CEEEEEcCCCcEEEEEcccCccc-----cccceeeeccCCCCCeEEEEEcCCeEEEEeCCCcEEEEECCcc
Q 009373          345 DFLFTGGEDGAIHMYEIINDCTE-----ANVLLVATWIPHTGPVNSLAFEFPWLVSAAGDGKLSLIDVRKL  410 (536)
Q Consensus       345 ~~l~tg~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~  410 (536)
                      ...++-..+|.+..|.-......     .....+.........|..|+....+-++-..||.|+.|=....
T Consensus       284 ~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~  354 (401)
T d1a12a_         284 HHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTN  354 (401)
T ss_dssp             SEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSEEEEEETTSCEEEEECCTT
T ss_pred             cceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCCCeEEEEeeCCEEEEEeCCCeEEEEecCCC
Confidence            55666778899999975432110     0011111222233468888887777778899999999976553

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.06  E-value=9.3  Score=31.72  Aligned_cols=103  Identities=9%  Similarity=-0.060  Sum_probs=48.0

Q ss_pred             EeCCEEEEEec---------CCeEEEEeCCCceEeEeee---ccccEEEEeecCCEEEEec-C-----CcEEEEeCCCCc
Q 009373          261 LDLTRIYSGSW---------DMTVRVWDRALLKCLKVLR---HSDWVYGLAPHDTTVASTS-G-----SDVYIWDTNSGC  322 (536)
Q Consensus       261 ~~~~~l~s~s~---------dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~  322 (536)
                      .++..++.|+.         -..+.+||..+.+....-.   ....-.+...++++++.++ +     .....+|..+..
T Consensus        49 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~  128 (288)
T d1zgka1          49 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDE  128 (288)
T ss_dssp             ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred             ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccccceeeEEecceecccccceeeeeccccCc
Confidence            35555555542         1356778877655433221   1111122335666666554 2     235667777765


Q ss_pred             EEEEEccccccceEEEEEeCCCCEEEEEcCC-----CcEEEEEcccC
Q 009373          323 LLTVVNGAHVGNTKSLARSHTGDFLFTGGED-----GAIHMYEIIND  364 (536)
Q Consensus       323 ~~~~~~~~~~~~i~~l~~~~~~~~l~tg~~d-----g~i~iwd~~~~  364 (536)
                      ............-.++... ++..++.|+.+     ..+..||..+.
T Consensus       129 ~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~  174 (288)
T d1zgka1         129 WHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN  174 (288)
T ss_dssp             EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             cccccccccccccceeeee-eecceEecCcccccccceEEEeecccc
Confidence            4332211111111122222 34555555543     34778887665

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.18  E-value=15  Score=31.90  Aligned_cols=191  Identities=12%  Similarity=0.126  Sum_probs=101.7

Q ss_pred             cCCCEEEEEeCCCcEEEEECCCCceeeeeCCCCceEEEEe----cCCC--EEEEEeC--C--CcEEEEEcccCccceecc
Q 009373          168 ASAKLLFTSGYDSIVRMWHLEDGFSIASSKPLGCTIRAVA----ADKK--LLVAGGT--D--GFIHCWRAVEVLPHLFDI  237 (536)
Q Consensus       168 ~~~~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~----~~~~--~l~sg~~--d--g~i~vwd~~~~~~~~~~~  237 (536)
                      |+..+++.....+-|.+||++ |+.+..+......-..+.    .+++  .+++++.  +  .+|.+|.+......+..+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            345677777777779999985 888877754333222222    2222  3455542  2  357788775332111111


Q ss_pred             cCcccccceEEeeCCccCEEEEEE-----eCC-EEEEEecCCeEEEEeCC---Cc----eEeEeeeccccEEEEe--ecC
Q 009373          238 SGSEKQNTQFRLWEHEGPITSLAL-----DLT-RIYSGSWDMTVRVWDRA---LL----KCLKVLRHSDWVYGLA--PHD  302 (536)
Q Consensus       238 ~~~~~~~~~~~~~~h~~~v~~l~~-----~~~-~l~s~s~dg~i~iwd~~---~~----~~~~~~~~~~~v~~~~--~~~  302 (536)
                      ....  .+   ...-...+..+|+     ++. +++....+|.+..|.+.   .+    +.++.+.....+-.+.  ...
T Consensus       117 ~~~~--~p---~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~  191 (353)
T d1h6la_         117 TDPN--RP---IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEY  191 (353)
T ss_dssp             SCSS--SC---EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTT
T ss_pred             cccc--cc---cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCC
Confidence            1100  00   0011123555665     233 46677788999888663   22    3444555555555554  445


Q ss_pred             CEEEEec-CCcEEEEeCCC-----CcEEEEEcc-ccccceEEEEEeC--CC--CEEEEEcCCCcEEEEEcccC
Q 009373          303 TTVASTS-GSDVYIWDTNS-----GCLLTVVNG-AHVGNTKSLARSH--TG--DFLFTGGEDGAIHMYEIIND  364 (536)
Q Consensus       303 ~~l~~~~-d~~i~i~d~~~-----~~~~~~~~~-~~~~~i~~l~~~~--~~--~~l~tg~~dg~i~iwd~~~~  364 (536)
                      ..|+.+. +..+..++...     +..+..... .....+-.|+.-.  ++  -+|++.-.+++..+||....
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            5676666 56666666542     222222221 2345667776543  32  34455555788999998664

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.49  E-value=3.4  Score=37.81  Aligned_cols=55  Identities=13%  Similarity=0.063  Sum_probs=38.4

Q ss_pred             ccceEEEEEeCCCCEEEEEcCCCcEEEEEcccCccccccceeeec------cCCCCCeEEEEEcC
Q 009373          332 VGNTKSLARSHTGDFLFTGGEDGAIHMYEIINDCTEANVLLVATW------IPHTGPVNSLAFEF  390 (536)
Q Consensus       332 ~~~i~~l~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~~~~~------~~h~~~v~~l~~~~  390 (536)
                      -...++|+|.|+|+++++--.+|.|++++..++..    ..+..+      ..-......|+|+|
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~----~~i~~~~~~~~~~~ge~GLLgia~~P   86 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHP   86 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE----eecccCCccccccCCCCceeeEEeCC
Confidence            34678999999999888876689999998766532    112211      12245778999987