Citrus Sinensis ID: 009376

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
MSGRLYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKGAHFSLQNSYEQYCTLESSSANGSYTIYNSPSTVTFSPNGSPMSQQESQSYPPDLHHSPDNAYGSPMSTSCITNDASDLKHKLRELESVMLGPDSDIIDGIDSTYQNGTNKGSPEMDSGRQIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEEEccEEEEEEcccEEEEEEEcc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHccccEEEcHHHccHccccHHHcccccccEEEEEHHHHHHcccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEccccEEEEcccccEEEEEEccc
msgrlyyqpiqeiepyclpqfqtvdhhlqyndggkgahfsLQNSYEQYCTlesssangsytiynspstvtfspngspmsqqesqsyppdlhhspdnaygspmstscitndaSDLKHKLRELEsvmlgpdsdiidgidstyqngtnkgspemdsGRQIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNssgssickslrckepassdLLSYMHILYEVCpyfkfgymsANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFaarpggpphiritgiddsisayarggglGIVGKRLSKLAEqfkvpfefhaanmsgydvqlenlrvqpgeaVAVNFAFMLhhvpdesvsteNYRDRLLMLVKRLSPKVVTLVEQesntntaafYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSrftmagfrpyplssvVNATIKTLLENYCNRYRLQERDGALFLGWMNrdlvascawr
MSGRLYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKGAHFSLQNSYEQYCTLESSSANGSYTIYNSPSTVTFSPNGSPMSQQESQSYPPDLHHSPDNAYGSPMSTSCITNDASDLKHKLRELESVMLGPDSDIIDGIDSTYQNGtnkgspemdsGRQIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTlveqesntntaafyPRFLEALNYYTAMFESIDVNLARDHKERINIeqhclardVVNIIACEGPERIERHELLGKWRSRFTmagfrpyplssVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR
MSGRLYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKGAHFSLQNSYEQYCTLESSSANGSYTIYNSPSTVTFSPNGSPMSQQESQSYPPDLHHSPDNAYGSPMSTSCITNDASDLKHKLRELESVMLGPdsdiidgidsTYQNGTNKGSPEMDSGRQIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR
****LYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKGAHFSLQNSYEQYCTLE*******YTI*********************************************************************************************QIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAW*
******Y***QEIE*YCL******************************CTL********************************************************************************************************************HVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSIC*******PASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQA*******PPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR
MSGRLYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKGAHFSLQNSYEQYCTLESSSANGSYTIYNSPSTVTF******************LHHSPDNAYGSPMSTSCITNDASDLKHKLRELESVMLGPDSDIIDGIDSTYQNGTNKGSPEMDSGRQIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR
****LYYQPIQEIEPYCLPQFQTVD*******************************************************************************SCI***ASDLKHKLRELESVMLGPD************************GRQIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR
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MSGRLYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKGAHFSLQNSYEQYCTLESSSANGSYTIYNSPSTVTFSPNGSPMSQQESQSYPPDLHHSPDNAYGSPMSTSCITNDASDLKHKLRELESVMLGPDSDIIDGIDSTYQNGTNKGSPEMDSGRQIIGAIAKGDLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query536 2.2.26 [Sep-21-2011]
Q9LDL7490 Scarecrow-like transcript yes no 0.902 0.987 0.633 0.0
Q8GVE1544 Chitin-inducible gibberel yes no 0.955 0.941 0.591 1e-177
Q8H125597 Scarecrow-like protein 5 no no 0.906 0.814 0.601 1e-171
Q9S7H5413 Scarecrow-like protein 21 no no 0.759 0.985 0.683 1e-166
Q9M0M5529 Scarecrow-like protein 13 no no 0.940 0.952 0.530 1e-151
Q69VG1571 Chitin-inducible gibberel no no 0.772 0.725 0.534 1e-143
Q9SDQ3593 Scarecrow-like protein 1 no no 0.796 0.720 0.486 1e-123
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.662 0.601 0.373 2e-63
Q9C8Y3511 DELLA protein RGL1 OS=Ara no no 0.652 0.684 0.369 1e-62
Q9XE58769 Scarecrow-like protein 14 no no 0.694 0.483 0.342 3e-62
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/538 (63%), Positives = 416/538 (77%), Gaps = 54/538 (10%)

Query: 5   LYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKGAHFSLQNSYEQYCTLESSSANGSYTIYN 64
           +Y QP QE+E Y          + + N   K  +  + NS +++CTLE    +  Y   N
Sbjct: 1   MYKQPRQELEAY----------YFEPNSVEKLRYLPVNNSRKRFCTLEPFPDSPPY---N 47

Query: 65  SPSTVTFSPNGSPMSQQESQSYPPDLHHSPDNAYGSPMSTSCITNDASDLKHKLRELESV 124
           + ST T+                       D+  GS     C+T++ +D KHK+RE+E+V
Sbjct: 48  ALSTATY-----------------------DDTCGS-----CVTDELNDFKHKIREIETV 79

Query: 125 MLGPDS-----DIIDGIDSTYQNGTNKGSPEMDSGRQIIGAIAKGDLKHVLIACAKAVSE 179
           M+GPDS     D  D  DST        S E++  R  + AI++ DL+  L++CAKA+SE
Sbjct: 80  MMGPDSLDLLVDCTDSFDST-------ASQEINGWRSTLEAISRRDLRADLVSCAKAMSE 132

Query: 180 NELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSL-RCKEPASSD 238
           N+L++A+ +M +LRQMVSVSGEPIQRLGAY+LEGLVA+L SSGSSI K+L RC EPAS++
Sbjct: 133 NDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEPASTE 192

Query: 239 LLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARP 298
           LLSYMHILYEVCPYFKFGYMSANGAIAEAMK+E+RVHIIDFQIGQGSQW+TLIQAFAARP
Sbjct: 193 LLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARP 252

Query: 299 GGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLENLR 358
           GGPP IRITGIDD  SAYARGGGL IVG RL+KLA+QF VPFEF++ ++S  +V+ +NL 
Sbjct: 253 GGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLG 312

Query: 359 VQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYP 418
           V+PGEA+AVNFAF+LHH+PDESVSTEN+RDRLL +VK LSPKVVTLVEQESNTNTAAF+P
Sbjct: 313 VRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFP 372

Query: 419 RFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKW 478
           RF+E +NYY AMFESIDV L RDHK+RIN+EQHCLARDVVNIIACEG +R+ERHELLGKW
Sbjct: 373 RFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHELLGKW 432

Query: 479 RSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAWR 536
           RSRF MAGF PYPLS +VN+TIK+LL NY ++YRL+ERDGAL+LGWM+RDLVASCAW+
Sbjct: 433 RSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEERDGALYLGWMHRDLVASCAWK 490
Probable transcription factor involved in phytochrome A (phyA) signal transduction.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XE58|SCL14_ARATH Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
383866669552 GRAS family protein, partial [Dimocarpus 1.0 0.971 0.826 0.0
225447596545 PREDICTED: scarecrow-like transcription 0.996 0.979 0.805 0.0
224131790547 GRAS family transcription factor [Populu 1.0 0.979 0.794 0.0
356551832545 PREDICTED: scarecrow-like transcription 0.998 0.981 0.789 0.0
357495355544 Chitin-inducible gibberellin-responsive 0.998 0.983 0.783 0.0
356501709541 PREDICTED: scarecrow-like transcription 0.985 0.975 0.784 0.0
302399051551 SCL domain class transcription factor [M 0.996 0.969 0.768 0.0
302121699538 phytochrome A signal transduction 1 [Hyp 1.0 0.996 0.756 0.0
255586451582 Chitin-inducible gibberellin-responsive 0.923 0.850 0.789 0.0
449444500545 PREDICTED: scarecrow-like transcription 0.996 0.979 0.731 0.0
>gi|383866669|gb|AFH54536.1| GRAS family protein, partial [Dimocarpus longan] gi|448278878|gb|AGE44291.1| GRAS54 protein [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/541 (82%), Positives = 486/541 (89%), Gaps = 5/541 (0%)

Query: 1   MSGRLYYQPIQEIEPYCLPQFQTVDHHLQYNDGGKG-----AHFSLQNSYEQYCTLESSS 55
           MS   +YQP+QE+E Y L QFQ  DHHL+YND           FS+ N+YE YCTLESSS
Sbjct: 12  MSSGSFYQPMQEVEAYYLSQFQNKDHHLRYNDNSYDDSSLVTDFSVPNTYEPYCTLESSS 71

Query: 56  ANGSYTIYNSPSTVTFSPNGSPMSQQESQSYPPDLHHSPDNAYGSPMSTSCITNDASDLK 115
            N SY  Y SPSTV FSP GSPMSQQESQSYPPDLHHSPDNAYGSP S SC+TND SDL+
Sbjct: 72  VNRSYNTYKSPSTVNFSPTGSPMSQQESQSYPPDLHHSPDNAYGSPRSGSCVTNDVSDLR 131

Query: 116 HKLRELESVMLGPDSDIIDGIDSTYQNGTNKGSPEMDSGRQIIGAIAKGDLKHVLIACAK 175
           HKLRELE+VMLGPDSDIID IDST+QNGT+  S EM+  RQI+GA ++ D+K VLIAC+K
Sbjct: 132 HKLRELETVMLGPDSDIIDSIDSTFQNGTDTCSSEMNIWRQIMGAGSRKDVKQVLIACSK 191

Query: 176 AVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPA 235
           AVS+N+ L+A+WLM ELRQMVSVSGEPIQRLGAYMLEGLVARL SSGSSI K+LRCKEPA
Sbjct: 192 AVSDNDFLMADWLMAELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA 251

Query: 236 SSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFA 295
           S+DLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQI QGSQWITLIQAFA
Sbjct: 252 SADLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIAQGSQWITLIQAFA 311

Query: 296 ARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDVQLE 355
           ARPGGPPHIRITGIDDS SAYARGGGL IVG++LS+LA+QFKVPFEFHAA MSGYDV+LE
Sbjct: 312 ARPGGPPHIRITGIDDSTSAYARGGGLYIVGRKLSQLAQQFKVPFEFHAAGMSGYDVKLE 371

Query: 356 NLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVTLVEQESNTNTAA 415
           NL VQPGEA+AVNFAFMLHH+PDESVSTENYRDR+L+ VKRLSPKVVTLVEQESNTNT A
Sbjct: 372 NLGVQPGEALAVNFAFMLHHMPDESVSTENYRDRMLIQVKRLSPKVVTLVEQESNTNTTA 431

Query: 416 FYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELL 475
           FYPRFLEALNYYTAMFESIDV L RDHKERIN+EQHCLARD+VNIIACEGPER+ERHELL
Sbjct: 432 FYPRFLEALNYYTAMFESIDVTLPRDHKERINVEQHCLARDIVNIIACEGPERVERHELL 491

Query: 476 GKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLGWMNRDLVASCAW 535
           GKW+SRF MAGFRPYPLSSVVNATIKTLLENYC +YRLQERDGAL+LGWMNRDLVASCAW
Sbjct: 492 GKWKSRFKMAGFRPYPLSSVVNATIKTLLENYCEKYRLQERDGALYLGWMNRDLVASCAW 551

Query: 536 R 536
           +
Sbjct: 552 K 552

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225447596|ref|XP_002272334.1| PREDICTED: scarecrow-like transcription factor PAT1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131790|ref|XP_002321179.1| GRAS family transcription factor [Populus trichocarpa] gi|222861952|gb|EEE99494.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551832|ref|XP_003544277.1| PREDICTED: scarecrow-like transcription factor PAT1-like [Glycine max] Back     alignment and taxonomy information
>gi|357495355|ref|XP_003617966.1| Chitin-inducible gibberellin-responsive protein [Medicago truncatula] gi|355519301|gb|AET00925.1| Chitin-inducible gibberellin-responsive protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501709|ref|XP_003519666.1| PREDICTED: scarecrow-like transcription factor PAT1-like isoform 1 [Glycine max] gi|356501711|ref|XP_003519667.1| PREDICTED: scarecrow-like transcription factor PAT1-like isoform 2 [Glycine max] gi|356501713|ref|XP_003519668.1| PREDICTED: scarecrow-like transcription factor PAT1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|302399051|gb|ADL36820.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|302121699|gb|ADK92865.1| phytochrome A signal transduction 1 [Hypericum perforatum] Back     alignment and taxonomy information
>gi|255586451|ref|XP_002533870.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] gi|223526192|gb|EEF28520.1| Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449444500|ref|XP_004140012.1| PREDICTED: scarecrow-like transcription factor PAT1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query536
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.802 0.877 0.722 1.6e-173
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.979 0.879 0.577 7.7e-158
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.695 0.903 0.726 1e-146
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.966 0.873 0.425 5.7e-107
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.654 0.686 0.376 2.9e-62
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.656 0.660 0.392 7.3e-59
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.669 0.656 0.362 1.9e-58
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.692 0.482 0.343 2.5e-58
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.850 0.776 0.344 4e-58
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.662 0.678 0.353 2.9e-56
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1648 (585.2 bits), Expect = 1.6e-173, Sum P(2) = 1.6e-173
 Identities = 313/433 (72%), Positives = 376/433 (86%)

Query:   105 SCITNDASDLKHKLRELESVMLGPXXXXXXXXXXTYQNGTNKGSPEMDSGRQIIGAIAKG 164
             SC+T++ +D KHK+RE+E+VM+GP             + T   S E++  R  + AI++ 
Sbjct:    60 SCVTDELNDFKHKIREIETVMMGPDSLDLLVDCTDSFDST--ASQEINGWRSTLEAISRR 117

Query:   165 DLKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSS 224
             DL+  L++CAKA+SEN+L++A+ +M +LRQMVSVSGEPIQRLGAY+LEGLVA+L SSGSS
Sbjct:   118 DLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSS 177

Query:   225 ICKSL-RCKEPASSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQ 283
             I K+L RC EPAS++LLSYMHILYEVCPYFKFGYMSANGAIAEAMK+E+RVHIIDFQIGQ
Sbjct:   178 IYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQ 237

Query:   284 GSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFH 343
             GSQW+TLIQAFAARPGGPP IRITGIDD  SAYARGGGL IVG RL+KLA+QF VPFEF+
Sbjct:   238 GSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFN 297

Query:   344 AANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKVVT 403
             + ++S  +V+ +NL V+PGEA+AVNFAF+LHH+PDESVSTEN+RDRLL +VK LSPKVVT
Sbjct:   298 SVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVT 357

Query:   404 LVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIAC 463
             LVEQESNTNTAAF+PRF+E +NYY AMFESIDV L RDHK+RIN+EQHCLARDVVNIIAC
Sbjct:   358 LVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIAC 417

Query:   464 EGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNRYRLQERDGALFLG 523
             EG +R+ERHELLGKWRSRF MAGF PYPLS +VN+TIK+LL NY ++YRL+ERDGAL+LG
Sbjct:   418 EGADRVERHELLGKWRSRFGMAGFTPYPLSPLVNSTIKSLLRNYSDKYRLEERDGALYLG 477

Query:   524 WMNRDLVASCAWR 536
             WM+RDLVASCAW+
Sbjct:   478 WMHRDLVASCAWK 490
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0004871 "signal transducer activity" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0009640 "photomorphogenesis" evidence=IMP
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LDL7PAT1_ARATHNo assigned EC number0.63380.90290.9877yesno
Q8GVE1CIGR2_ORYSJNo assigned EC number0.59160.95520.9411yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00029142001
SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (540 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 0.0
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  529 bits (1365), Expect = 0.0
 Identities = 192/376 (51%), Positives = 248/376 (65%), Gaps = 9/376 (2%)

Query: 166 LKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSI 225
           L H+L+ACA+AVS  +L LA  ++  L Q+ S +G+P+QRL AY  E L ARL  SGSSI
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 226 CKSLRCKEPA---SSDLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIG 282
             +L         S ++L+   + YEV PY KFG+ +AN AI EA + E+RVHIIDF IG
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 283 QGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEF 342
           QG QW +LIQA A+RPGGPPH+RITGI      ++    L   G RL++ A+   VPFEF
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSP--QFSSAEELEETGDRLAQFADSLGVPFEF 178

Query: 343 HAANMSGY-DVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKV 401
           +        D+ LE L V+PGEA+AVN  F LH + DESVS E+     L LVK L+PKV
Sbjct: 179 NPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLES--PTFLRLVKSLNPKV 236

Query: 402 VTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNII 461
           VTLVEQE+N N+A F  RF+EAL+YY+A+F+S++  L RD +ER  +E+  L R++VN++
Sbjct: 237 VTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVV 296

Query: 462 ACEGPERIERHELLGKWRSRFTMAGFRPYPLSSVVNATIKTLLENYCNR-YRLQERDGAL 520
           ACEG ER+ERHE  GKWR R   AGFRP PLS       K LL  Y    YR++E +G+L
Sbjct: 297 ACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYVDGYRVEEDNGSL 356

Query: 521 FLGWMNRDLVASCAWR 536
            LGW  R LVA+ AWR
Sbjct: 357 VLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 536
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 96.69
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.61
TIGR00740239 methyltransferase, putative. A simple BLAST search 95.14
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 94.67
PRK06202232 hypothetical protein; Provisional 92.56
PLN02233261 ubiquinone biosynthesis methyltransferase 91.87
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 91.72
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 91.66
PLN02336475 phosphoethanolamine N-methyltransferase 91.53
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 91.52
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 91.34
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 91.18
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 90.72
PRK08317241 hypothetical protein; Provisional 90.35
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 89.9
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 89.0
TIGR02072240 BioC biotin biosynthesis protein BioC. This enzyme 88.6
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 88.35
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 87.99
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 87.88
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 86.82
PRK05785226 hypothetical protein; Provisional 86.68
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 86.33
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 86.28
PRK12335287 tellurite resistance protein TehB; Provisional 85.57
TIGR02081194 metW methionine biosynthesis protein MetW. This pr 85.16
PRK11207197 tellurite resistance protein TehB; Provisional 84.01
PRK01683258 trans-aconitate 2-methyltransferase; Provisional 80.52
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=9.3e-115  Score=912.01  Aligned_cols=369  Identities=48%  Similarity=0.819  Sum_probs=354.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHhhccCCCCcCccccCCCCC---hhhHHHH
Q 009376          166 LKHVLIACAKAVSENELLLANWLMYELRQMVSVSGEPIQRLGAYMLEGLVARLNSSGSSICKSLRCKEPA---SSDLLSY  242 (536)
Q Consensus       166 L~~LLl~CA~AV~~gd~~~A~~lL~~L~~laS~~Gdp~QRLaayF~eAL~aRl~~sgs~~y~aL~~~~p~---~~ell~a  242 (536)
                      |++||++||+||+.||.+.|+.+|++|++++||.|||+||||+||+|||.+||.++|+++|+++.+..++   ..+.+.+
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999888655443   5678889


Q ss_pred             HHHHHhcCCcchhhhhhhcHHHHHhcccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChH
Q 009376          243 MHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGL  322 (536)
Q Consensus       243 ~~~l~e~~P~~kFa~~tANqAILEA~~ge~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L  322 (536)
                      +++||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.++  ....+
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l  158 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL  158 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998765  34689


Q ss_pred             HHHHHHHHHHHHhcCCcEEEEEee-cCCccccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHHHhcCCcE
Q 009376          323 GIVGKRLSKLAEQFKVPFEFHAAN-MSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLVKRLSPKV  401 (536)
Q Consensus       323 ~~tG~rL~~fA~s~gvpFeF~~V~-~~~~ev~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~VksL~Pkv  401 (536)
                      ++||+||.+||+++||||||++|. ..++++++++|++++||+|||||+|+||||.+++....+||+.||+.||+|+|+|
T Consensus       159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            999999999999999999999964 4567799999999999999999999999999999888899999999999999999


Q ss_pred             EEEEecCCCCCCCCchHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHhhhhhhhccCCcccccccchhhHHHH
Q 009376          402 VTLVEQESNTNTAAFYPRFLEALNYYTAMFESIDVNLARDHKERINIEQHCLARDVVNIIACEGPERIERHELLGKWRSR  481 (536)
Q Consensus       402 vtlvEqEan~N~~~F~~RF~EaL~yYsAlFDSLDa~lpr~~~eR~~vE~~~l~reI~NiVAcEG~eRvERhE~~~~Wr~r  481 (536)
                      ||++|+|+|||+++|++||.|||+||+|+|||||+++|+++.+|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r  318 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR  318 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCccccCChHHHHHHHHHHHccC-CCcEEEeeCCEEEEEeCCceeEEEeeeC
Q 009376          482 FTMAGFRPYPLSSVVNATIKTLLENYC-NRYRLQERDGALFLGWMNRDLVASCAWR  536 (536)
Q Consensus       482 ~~~AGF~~~plS~~~~~qak~LL~~y~-~gy~l~e~~g~L~LgWk~rpL~s~SAWr  536 (536)
                      |.+|||+++|+|+.+..|||.||+.|. +||+|++++|||+||||++||+++||||
T Consensus       319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999999999986 8999999999999999999999999998

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>TIGR02081 metW methionine biosynthesis protein MetW Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query536
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 66/483 (13%), Positives = 138/483 (28%), Gaps = 145/483 (30%)

Query: 110 DASDLKHKLRELESVMLGP---DSDIIDGIDSTYQNGTNKGSPEMDSGRQIIGAIAKGDL 166
           +  + +++ +++ SV       + D  D  D      + +   E+D    II +      
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE---EID---HIIMSKDAVSG 63

Query: 167 KHVLIACAKAVSEN-------ELLLAN--WLMYELRQMVSVSGEPIQRLGAY-MLEGLVA 216
              L     +  E        E+L  N  +LM  ++       E  Q      M      
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT------EQRQPSMMTRMYIEQRD 117

Query: 217 RLNSSGSSICKSLRCKEPASSDLLSYMHILYEVCPY---FKFGYMSANGA---IAEAMKD 270
           RL +      K    +      L      L E+ P       G +  +G      +    
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQ---ALLELRPAKNVLIDG-VLGSGKTWVALDVCLS 173

Query: 271 EDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLS 330
                 +DF+I     W+ L                    +S            V + L 
Sbjct: 174 YKVQCKMDFKI----FWLNL-----------------KNCNSPET---------VLEMLQ 203

Query: 331 KLAEQFKVPFEFHAANMSGYDVQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRL 390
           KL  Q    +   + + S   +++ +++ +           +             Y + L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-------LLKSK---------PYENCL 247

Query: 391 LML--VKRLSPKVV--------TLV--EQESNTNTAAFYPRFLEALNYYTAMF---ESID 435
           L+L  V+  + K           L+    +  T+  +       +L++++      E   
Sbjct: 248 LVLLNVQ--NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 436 VNLARDHKERINIEQHCLARD-------VVNIIAC---EGPERIERHELLGKWRSRFTM- 484
           + L +     ++     L R+        ++IIA    +G    +  + +   +    + 
Sbjct: 306 L-LLK----YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 485 --------AGFRPY-------PLSSVVNATIKTL--------------LENYCNRYRLQE 515
                   A +R         P S   +     L              + N  ++Y L E
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 516 RDG 518
           +  
Sbjct: 419 KQP 421
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.05
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 96.37
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.84
3dtn_A234 Putative methyltransferase MM_2633; structural gen 95.82
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.79
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 95.75
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.65
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 95.4
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 95.22
2r3s_A335 Uncharacterized protein; methyltransferase domain, 95.1
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 94.7
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 94.52
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 94.24
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 94.17
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 94.15
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 94.11
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 94.09
1xxl_A239 YCGJ protein; structural genomics, protein structu 94.01
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.64
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 93.59
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 93.54
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 93.49
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 93.28
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 93.15
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 92.93
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 92.88
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 92.86
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 92.41
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.12
3f4k_A257 Putative methyltransferase; structural genomics, P 91.74
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 91.68
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 91.61
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 91.58
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 91.33
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 91.2
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 91.12
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 90.95
3ocj_A305 Putative exported protein; structural genomics, PS 90.49
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 90.25
3m70_A286 Tellurite resistance protein TEHB homolog; structu 90.22
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 90.02
4e2x_A416 TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s 89.98
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 89.88
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 89.3
3ege_A261 Putative methyltransferase from antibiotic biosyn 88.92
3gu3_A284 Methyltransferase; alpha-beta protein, structural 88.77
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 88.17
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 87.77
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 87.43
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 87.15
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 87.06
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 86.86
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 86.63
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 86.59
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 86.1
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 85.3
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 84.92
2p7i_A250 Hypothetical protein; putative methyltransferase, 84.04
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 83.88
3hnr_A220 Probable methyltransferase BT9727_4108; structural 83.52
1wzn_A252 SAM-dependent methyltransferase; structural genomi 83.32
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 83.09
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 82.96
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 82.68
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 82.21
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 81.91
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 81.64
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 81.42
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 81.26
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 80.55
3i9f_A170 Putative type 11 methyltransferase; structural gen 80.23
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.05  E-value=0.0017  Score=64.07  Aligned_cols=107  Identities=17%  Similarity=0.234  Sum_probs=63.1

Q ss_pred             eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCccc
Q 009376          273 RVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYDV  352 (536)
Q Consensus       273 rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~ev  352 (536)
                      .-+|+|+|.|.|.    +...|+.+- ++|..+|||||.+..      .++...+++.++  ....+++|..  .+..++
T Consensus        71 ~~~vLDlGcGtG~----~~~~la~~~-~~~~~~v~gvD~s~~------ml~~A~~~~~~~--~~~~~v~~~~--~D~~~~  135 (261)
T 4gek_A           71 GTQVYDLGCSLGA----ATLSVRRNI-HHDNCKIIAIDNSPA------MIERCRRHIDAY--KAPTPVDVIE--GDIRDI  135 (261)
T ss_dssp             TCEEEEETCTTTH----HHHHHHHTC-CSSSCEEEEEESCHH------HHHHHHHHHHTS--CCSSCEEEEE--SCTTTC
T ss_pred             CCEEEEEeCCCCH----HHHHHHHhc-CCCCCEEEEEECCHH------HHHHHHHHHHhh--ccCceEEEee--cccccc
Confidence            3479999999884    444555543 346789999998753      366665555332  1223556543  222222


Q ss_pred             cccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEE-EEec
Q 009376          353 QLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVT-LVEQ  407 (536)
Q Consensus       353 ~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvt-lvEq  407 (536)
                           ...+-.+++  +.+.|||++++      .|..+|+.| +.|+|.-+. +.|.
T Consensus       136 -----~~~~~d~v~--~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          136 -----AIENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             -----CCCSEEEEE--EESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -----cccccccce--eeeeeeecCch------hHhHHHHHHHHHcCCCcEEEEEec
Confidence                 222223444  44578998642      356777776 679998765 4553
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query536
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.04
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.88
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.38
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 96.11
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 95.91
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 95.36
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 95.25
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 94.97
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.71
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 94.51
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 93.5
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 93.4
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 92.86
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 92.54
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 92.44
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 91.71
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 91.67
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 91.1
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 89.06
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 88.9
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 88.21
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 80.43
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.0065  Score=55.29  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=64.7

Q ss_pred             CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCCcccCCChHHHHHHHHHHHHHhcCCcEEEEEeecCCcc
Q 009376          272 DRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSISAYARGGGLGIVGKRLSKLAEQFKVPFEFHAANMSGYD  351 (536)
Q Consensus       272 ~rVHIIDf~I~~G~QWpsLiqaLA~R~gGPP~LRITgI~~~~s~~~~~~~L~~tG~rL~~fA~s~gvpFeF~~V~~~~~e  351 (536)
                      +.-||+|+|.|.|.-    ...|+.. -..|..+|||||.+..      .++...+++.    ..+....++.+..+..+
T Consensus        39 ~~~~vLDlGCGtG~~----~~~l~~~-~~~~~~~v~giD~S~~------ml~~A~~~~~----~~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          39 ADSNVYDLGCSRGAA----TLSARRN-INQPNVKIIGIDNSQP------MVERCRQHIA----AYHSEIPVEILCNDIRH  103 (225)
T ss_dssp             TTCEEEEESCTTCHH----HHHHHHT-CCCSSCEEEEECSCHH------HHHHHHHHHH----TSCCSSCEEEECSCTTT
T ss_pred             CCCEEEEeccchhhH----HHHHHHh-hcCCCCceEEeCCCHH------HHHHHHHHhH----hhcccchhhhccchhhc
Confidence            445899999998853    3344433 2246799999998753      3555555553    34444444444333222


Q ss_pred             ccccCccccCCceEEEeeccccCCCCCCCccccchHHHHHHHH-HhcCCcEEEEE
Q 009376          352 VQLENLRVQPGEAVAVNFAFMLHHVPDESVSTENYRDRLLMLV-KRLSPKVVTLV  405 (536)
Q Consensus       352 v~~~~L~i~~gEaLaVN~~~~LH~l~desv~~~n~rd~~L~~V-ksL~Pkvvtlv  405 (536)
                             ...++.-+|.|.+.|||++.+     + +..+|+.+ +.|+|.-..++
T Consensus       104 -------~~~~~~d~i~~~~~l~~~~~~-----d-~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         104 -------VEIKNASMVILNFTLQFLPPE-----D-RIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             -------CCCCSEEEEEEESCGGGSCGG-----G-HHHHHHHHHHHEEEEEEEEE
T ss_pred             -------cccccceeeEEeeeccccChh-----h-HHHHHHHHHHhCCCCceeec
Confidence                   222344556777889998642     2 44677766 78999986655
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure