Citrus Sinensis ID: 009379

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
Protein Sequence
MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSDVPNTRASSYGIFSNPTANAPTGQGMAADRTKEGIPTQGTAGVRPNQNSPGLKSDGSQTPGPDNGQRKFGIFSR
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHccEEEEEEccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEcccccEEEcHHHHHHHHHHccccEEEEccccccccEEEEcccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccHHHHHHHHHHHHHHEEEccccccccEEccccccccccccccccccccccccHHHcccHHcccccccccccccccccHcccccEEEEEcccccEEEEHHHHHHHHHHcccEEEEEEccccccEEEEEcHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEEEEcccHccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccHHHHHHHHHHHHcccHccccccccccccccHHHccHHcHHccccccccHHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mafscrtnqsRLKHLTHQFKRYYIqvpslnhsishtkiceakkpfwesavktpndfcnnvrffaapvqaqqkkdeketsgprlndkINAQFVRLVLDEGHKVVSRHEALALARSLQCDlvevdrkanppvckiMDFHKEKYQKELKEKDRAKaksditlkkgdckevrfsgkieqkDLQMKADTVKRLmdkgyrvkcmalpvgkkeeteDLGGYLSRLIDLIEdisvvesgphverKQAYAIIRHVkfgpskkgglkklkavgdtsgvskaatpsstiersvdiptpaiheedpaefglekiekkntpwsvsnsnddlnevfdladgakgltsnftpkvmnaapesasppasisasnfshpkpapnfsradtlgstphgpslgtgnryarseqknqfpqkpidnlgsgtresfrsepqfpsqrrqpppppnmnaspsmgekkpigteasnfrnsrlpnsissdvpntrassygifsnptanaptgqgmaadrtkegiptqgtagvrpnqnspglksdgsqtpgpdngqrkfgifsr
Flexible Loop (DISEMBL)
mafscrtnqsrlkhLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAapvqaqqkkdeketsgprlndkINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRkanppvckimdfHKEKYQkelkekdrakaksditlkkgdckevrfsgkieqkdlqmkadtvkrlmdkgyrvkcmalpvgkkeetedLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRhvkfgpskkgglkklkavgdtsgvskaatpsstiersvdiptpaiHEEDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARseqknqfpqkpidnlgsGTRESFRSEPqfpsqrrqpppppnmnaspsMGEKKPIGTEASnfrnsrlpnsissdvpntRASSYGIFSNPTANAPTGQGMAADRTKEGiptqgtagvrpnqnspglksdgsqtpgpdngqrkfgifsr
Low Complexity Region (SEG)
MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSkkgglkklkAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNaapesasppasisasNFSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKPIDNLGSGTRESFRSEpqfpsqrrqpppppnmnaspsmGEKKPIGTEASNFRNSRLPNSISSDVPNTRASSYGIFSNPTANAPTGQGMAADRTKEGIPTQGTAGVRPNQNSPGLKSDGSQTPGPDNGQRKFGIFSR
Disordered region (IsUnstruct)
***********LKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAP*******************KINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH*********************************************DTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFG***********************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*AFSC**NQSRLKHLTHQFKRYYIQVPSLNH********EAKKPFWESAVKTPNDFCNNVR***********************DKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK*********************GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIR*********************************************************************************************************************************************************************************************************************************************************************************************KFGI***
Disordered Region (DISEMBL)
*********SRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAPV*************PRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKA*******************SVDIPTPAIHEEDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMN****************FSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKPIDNLGSG****************************SMGEKKPIGTEASNFRNSRLPNSISSDVPNTRASSYGIFSNPTANAPTGQGMAADRTKEGIPTQGTAGVRPNQN***************NGQRKFGIFSR
Disordered Region (DISPRO)
*AFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAPVQA***********PRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKF**********************************************AEFGLEKIE*KNTPWSV*NS*DDLNEVFDLADG***************************************************GPSLGTG*********N*********************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVKTPNDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIxxxxxxxxxxxxxxxxxxxxxSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSDVPNTRASSYGIFSNPTANAPTGQGMAADRTKEGIPTQGTAGVRPNQNSPGLKSDGSQTPGPDNGQRKFGIFSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	536	2.2.26 [Sep-21-2011]
A6Q167	177	Translation initiation fa	yes	no	0.276	0.836	0.416	3e-18
A1UUD5	173	Translation initiation fa	yes	no	0.302	0.936	0.329	4e-16
Q39VS8	172	Translation initiation fa	yes	no	0.291	0.906	0.359	4e-16
Q5WEI6	167	Translation initiation fa	yes	no	0.291	0.934	0.359	5e-16
A1KSY3	173	Translation initiation fa	yes	no	0.302	0.936	0.348	6e-16
P65138	173	Translation initiation fa	yes	no	0.302	0.936	0.348	6e-16
P65137	173	Translation initiation fa	yes	no	0.302	0.936	0.348	6e-16
Q5F9U3	173	Translation initiation fa	yes	no	0.302	0.936	0.348	6e-16
Q828D2	241	Translation initiation fa	yes	no	0.309	0.688	0.340	7e-16
Q70YI5	171	Translation initiation fa	yes	no	0.294	0.923	0.327	9e-16

>sp|A6Q167|IF3_NITSB Translation initiation factor IF-3 OS=Nitratiruptor sp. (strain SB155-2) GN=infC PE=3 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 91/156 (58%), Gaps = 8/156 (5%)

Query: 83  LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
           LN++I+A  VR V D+G  + +VSR EAL +A     DLV +   ANPPVCKIMD+ K K
Sbjct: 10  LNEQIDAPEVRCVGDDGTQYGIVSRDEALKIAEQKGLDLVLIAPNANPPVCKIMDYGKFK 69

Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
           YQ+E K K+  K ++ I     + KE++ S KI Q D+  K    +  ++KG  VK    
Sbjct: 70  YQQEKKLKEAKKKQTKI-----EVKEIKLSVKIAQNDIDYKVKHAREFLEKGKHVKFRVF 124

Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
             G++    + G   L ++I LIEDI VVE  PH+E
Sbjct: 125 LRGREMAHPEAGVEVLEKIIPLIEDIGVVEKKPHLE 160

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
Nitratiruptor sp. (strain SB155-2) (taxid: 387092)

>sp|A1UUD5|IF3_BARBK Translation initiation factor IF-3 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=infC PE=3 SV=1

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 8/170 (4%)

Query: 77  ETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
           +  GPR N +I    ++L+ DEG    +VS  EALA+A ++  DLVE+   A PPVCKI+
Sbjct: 5   QKDGPRSNQEIRVPCIQLINDEGQNQGIVSTQEALAMAANIGLDLVEIVPNAEPPVCKIV 64

Query: 135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
           D  K KYQ + K  +  K +  I     + KE++    ++  D  +K   + R ++ G +
Sbjct: 65  DLGKLKYQNQKKAAETRKKQKII-----EIKEIKLRPNVDVHDYGVKLKAIHRFIEHGNK 119

Query: 195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
           VK      G++   +DLG   L R+ + + +I+ +ES P +E +Q   +I
Sbjct: 120 VKITLRFRGREMAHQDLGVKLLERMKEDVSEIAKIESEPKLENRQMMMVI 169

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Bartonella bacilliformis (strain ATCC 35685 / KC583) (taxid: 360095)

>sp|Q39VS8|IF3_GEOMG Translation initiation factor IF-3 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=infC PE=3 SV=2

 Score = 86.7 bits (213), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 8/164 (4%)

Query: 83  LNDKINAQFVRLV--LDEGHKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
           +N  I A+ +R+V    E   ++  +EALALA S Q DLVEV   A PPVC+IMD+ K K
Sbjct: 8   VNQAIRAREIRVVGANSEQLGIMPLNEALALAESQQLDLVEVSPTAVPPVCRIMDYGKFK 67

Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
           YQ+  K ++  K +S + +     KEV+   K ++ DLQ K   V+R +++G + K   +
Sbjct: 68  YQQSKKLQEAKKKQSHVVV-----KEVKLRPKTDEHDLQFKIKHVRRFIEEGNKAKVTLV 122

Query: 201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
             G++    + G   L R+   IEDI+V+E  P +E +  + I+
Sbjct: 123 FRGREITHMEFGVRALERVASEIEDIAVIEMKPKMEGRSMFMIV 166

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) (taxid: 269799)

>sp|Q5WEI6|IF3_BACSK Translation initiation factor IF-3 OS=Bacillus clausii (strain KSM-K16) GN=infC PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 91/164 (55%), Gaps = 8/164 (4%)

Query: 83  LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
           +N+ I A+ VRLV   G +  V S+HEAL +A+ +  DLV V   A PPVC+IMD+ K +
Sbjct: 3   VNEGIRAREVRLVGANGDQIGVKSKHEALEMAQRVNLDLVCVAPNAKPPVCRIMDYGKYR 62

Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
           Y+++ KEK+  K +  IT+     KEVR S  IE  D   K    ++ ++KG +VK    
Sbjct: 63  YEQQKKEKEARKNQKVITI-----KEVRLSPTIEANDFNTKLRNARKFLEKGDKVKASIR 117

Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
             G+      +G   L RL    EDI+ +E+ P +E +  + ++
Sbjct: 118 FRGRAITHSQIGRDVLERLAKECEDIATIEARPKMEGRSMFLVM 161

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Bacillus clausii (strain KSM-K16) (taxid: 66692)

>sp|A1KSY3|IF3_NEIMF Translation initiation factor IF-3 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=infC PE=3 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)

Query: 82  RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
           R+N +I A+ VRL+ + G +  VVS  EALA+A     DLVE+   A PPVCK+MD+ K 
Sbjct: 9   RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68

Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
           KYQ+  K++D AK       K+   KE++F    ++ D Q+K   + R +  G +VK   
Sbjct: 69  KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123

Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
              G++   + LG   L R+ + + +++ +ES P +E +Q   +I      P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) (taxid: 272831)

>sp|P65138|IF3_NEIMB Translation initiation factor IF-3 OS=Neisseria meningitidis serogroup B (strain MC58) GN=infC PE=3 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)

Query: 82  RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
           R+N +I A+ VRL+ + G +  VVS  EALA+A     DLVE+   A PPVCK+MD+ K 
Sbjct: 9   RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68

Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
           KYQ+  K++D AK       K+   KE++F    ++ D Q+K   + R +  G +VK   
Sbjct: 69  KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123

Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
              G++   + LG   L R+ + + +++ +ES P +E +Q   +I      P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

>sp|P65137|IF3_NEIMA Translation initiation factor IF-3 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=infC PE=3 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)

Query: 82  RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
           R+N +I A+ VRL+ + G +  VVS  EALA+A     DLVE+   A PPVCK+MD+ K 
Sbjct: 9   RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68

Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
           KYQ+  K++D AK       K+   KE++F    ++ D Q+K   + R +  G +VK   
Sbjct: 69  KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123

Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
              G++   + LG   L R+ + + +++ +ES P +E +Q   +I      P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

>sp|Q5F9U3|IF3_NEIG1 Translation initiation factor IF-3 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=infC PE=3 SV=1

 Score = 86.3 bits (212), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 13/175 (7%)

Query: 82  RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKE 139
           R+N +I A+ VRL+ + G +  VVS  EALA+A     DLVE+   A PPVCK+MD+ K 
Sbjct: 9   RINGEITAKEVRLISESGEQLGVVSVREALAMAEGQDVDLVEISPTAKPPVCKLMDYGKY 68

Query: 140 KYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMA 199
           KYQ+  K++D AK       K+   KE++F    ++ D Q+K   + R +  G +VK   
Sbjct: 69  KYQQA-KKRDEAKKNQ----KQVQIKEIKFRPGTDEGDYQIKMRNINRFLADGDKVKVTL 123

Query: 200 LPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
              G++   + LG   L R+ + + +++ +ES P +E +Q   +I      P KK
Sbjct: 124 RFRGREMAHQQLGAQLLERVKEDLAEVAQIESFPKMEGRQMVMMI-----APKKK 173

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) (taxid: 242231)

>sp|Q828D2|IF3_STRAW Translation initiation factor IF-3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=infC PE=3 SV=1

 Score = 85.9 bits (211), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 13/179 (7%)

Query: 78  TSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
           ++ PR+ND+I    VRLV   G +V  V   +AL LA+    DLVEV   A PPVCK+MD
Sbjct: 10  STEPRINDRIRVPEVRLVGPSGEQVGIVPLAKALELAQEYDLDLVEVAASARPPVCKLMD 69

Query: 136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
           + K KY+  +K ++  K ++   +     KE++   KI+  D   K   V R + +G +V
Sbjct: 70  YGKFKYESAMKAREARKNQAHTVI-----KEMKLRPKIDPHDYDTKKGHVVRFLKQGDKV 124

Query: 196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
           K   +  G+++   +LG   L RL   +ED+  VES P  + +    ++     GP KK
Sbjct: 125 KITIMFRGREQSRPELGYRLLQRLATDVEDLGFVESSPKQDGRNMIMVL-----GPHKK 178

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Streptomyces avermitilis (taxid: 33903)

>sp|Q70YI5|IF3_THETH Translation initiation factor IF-3 OS=Thermus thermophilus GN=infC PE=3 SV=1

 Score = 85.5 bits (210), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 55/168 (32%), Positives = 100/168 (59%), Gaps = 10/168 (5%)

Query: 84  NDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKY 141
           N++I A+ VR+V  +G +  ++   EAL LA+ +  DLV V   A+PPV +IMD+ K +Y
Sbjct: 7   NERIRAKQVRVVGPDGKQLGIMDTREALRLAQEMDLDLVLVGPNADPPVARIMDYSKWRY 66

Query: 142 QKELKEKD-RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
           ++++ EK+ R KA      K+ + K ++F  KI++ D Q K   +KR + +G++VK   +
Sbjct: 67  EQQMAEKEARKKA------KRTEVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIM 120

Query: 201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVK 247
             G++    +LG   L+R+ + ++D++VVE  P +  +    ++  VK
Sbjct: 121 FRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNMLLAPVK 168

IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.

Thermus thermophilus (taxid: 274)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
297744586	759	unnamed protein product [Vitis vinifera]	0.901	0.636	0.457	1e-109
147855678	713	hypothetical protein VITISV_023967 [Viti	0.901	0.677	0.425	1e-95
449489738	536	PREDICTED: uncharacterized LOC101207030	0.908	0.908	0.408	1e-94
255545486	572	translation initiation factor if-3, puta	0.876	0.821	0.411	2e-93
449458680	566	PREDICTED: uncharacterized protein LOC10	0.927	0.878	0.403	4e-93
356534427	547	PREDICTED: uncharacterized protein LOC10	0.921	0.903	0.363	7e-65
326487826	528	predicted protein [Hordeum vulgare subsp	0.429	0.435	0.551	9e-64
357138356	521	PREDICTED: uncharacterized protein LOC10	0.348	0.358	0.598	5e-61
242084348	502	hypothetical protein SORBIDRAFT_08g02273	0.408	0.436	0.558	5e-61
115443613	519	Os02g0101100 [Oryza sativa Japonica Grou	0.343	0.354	0.608	6e-60

>gi|297744586|emb|CBI37848.3| unnamed protein product [Vitis vinifera]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 252/551 (45%), Positives = 338/551 (61%), Gaps = 68/551 (12%)

Query: 1   MAFSCRTNQSRLKH--LTHQFKRYYIQVPSLNHSISHT---KICEAKKPFWESAVKTPND 55
           M+F  R NQ +LK   LT QFKR  +Q+P   HS+++T    I   + P W +  + P+D
Sbjct: 1   MSFWHRINQPKLKWQTLTRQFKRCSLQIPHA-HSLNNTPRQTIRGFENPCWVNR-RNPSD 58

Query: 56  FCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSL 115
           FC NVRFFAAPVQA+ K++EK+ SGPR+ND+I A FVRLV D+GH++VSR  AL  AR L
Sbjct: 59  FCYNVRFFAAPVQAKPKQEEKDASGPRMNDQIRADFVRLVTDDGHEIVSRMVALERARKL 118

Query: 116 QCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQ 175
           + DLVEV RKA+PPVCKIMDFH+EKY++++KEKDR K+KS++TL+KGDCKEVRFSGK E 
Sbjct: 119 KLDLVEVQRKADPPVCKIMDFHREKYKQQIKEKDRTKSKSELTLRKGDCKEVRFSGKTEA 178

Query: 176 KDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVE 235
           KDL+MKAD VKRLMD+GYRVKCMA+      E +DLGG L+RL  LIED+  VESGP VE
Sbjct: 179 KDLKMKADMVKRLMDRGYRVKCMAMGT----EDQDLGGLLTRLSSLIEDVCFVESGPRVE 234

Query: 236 RKQAYAIIRHVKFGP-SKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDP 294
           ++QAY I+RH+KFGP  K  G K  K VG TS  S+AAT S TI  +++   P+ H E P
Sbjct: 235 KRQAYVIVRHIKFGPSKKGSGKKASKVVGVTS--SEAATMSPTISPTIN---PSSHVESP 289

Query: 295 AEFGLE--------------------------------KIEKKNTPWSVSNSNDDLNEVF 322
            +  +E                                 +E     WSV ++NDD ++VF
Sbjct: 290 IQLEVESDTAESDLENEDEVLSDEADTPISPSMRMADKNLEDNKATWSVFDANDDFDKVF 349

Query: 323 DLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSH-PKPAPNFSRADTLGSTPHGPS 381
           D  + A    SN T K  NA  E++S   +I+ S+  H P+P  + +R +++ S+   P 
Sbjct: 350 DFTNDAN--PSNSTDKQTNAKLETSSSLENINLSDIMHGPRPVLDSTRTNSVPSSLTEPP 407

Query: 382 LGTGNRYARSEQKNQF-PQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGE 440
             T NRY +SE +N+F P   +DN G G   S R  PQF +Q +Q     + N+SPS G 
Sbjct: 408 PETLNRYRKSEPRNRFMPTTSMDNKGPGATNSLRLGPQFLNQGKQ--ARSDTNSSPSTGR 465

Query: 441 KKPIGTEASNFRNSRLPNSISSDVP--------NTRASSYGIFSNPTANAPTGQGMAAD- 491
            +  GT+AS FRN +LP     ++P        ++   SYG FS   A AP     +A+ 
Sbjct: 466 TRQDGTDASVFRNLKLP---LHEIPMQEPSRPPSSPRPSYGDFSALKAEAPGKLDPSANS 522

Query: 492 -RTKEGIPTQG 501
            R++  +P QG
Sbjct: 523 ARSEPRLPNQG 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855678|emb|CAN79141.1| hypothetical protein VITISV_023967 [Vitis vinifera]

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 250/588 (42%), Positives = 331/588 (56%), Gaps = 105/588 (17%)

Query: 1   MAFSCRTNQSRLKH--LTHQFKRYYIQVPSLNHSISHT---KICEAKKPFWESAVKTPND 55
           M+F  R NQ +LK   LT QFKR  +Q+P   HS+++T    I   + P W +  + P+D
Sbjct: 1   MSFWHRINQPKLKWQTLTRQFKRCSLQIPHA-HSLNNTPRQTIRGFENPCWVNR-RNPSD 58

Query: 56  FCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSL 115
           FC NVRFFAAPVQA+ K++EK+ SGPR+ND+I A FVRLV D+GH++VSR  AL  AR L
Sbjct: 59  FCYNVRFFAAPVQAKPKQEEKDASGPRMNDQIRADFVRLVTDDGHEIVSRMVALERARKL 118

Query: 116 QCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKS-------------------- 155
           + DLVEV RKA+PPVCKIMDFH EKY++++KEKDR K+KS                    
Sbjct: 119 KLDLVEVQRKADPPVCKIMDFHXEKYKQQIKEKDRTKSKSTSKIVKVVHLEFLHLMWRVI 178

Query: 156 ----DITLKK----------------GDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
               ++TL+K                G C       K+E KDL+MKAD VKRLMD+GYRV
Sbjct: 179 YDVSELTLRKRRLQGSSIFWENWHAYGRCDMGTL--KLEAKDLKMKADMVKRLMDRGYRV 236

Query: 196 KCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGP-SKKG 254
           KCMA+      E +DLGG L+RL  LIED+  VESGP VE++QAY I+RH+KFGP  K  
Sbjct: 237 KCMAMGT----EDQDLGGLLTRLSSLIEDVCFVESGPRVEKRQAYVIVRHIKFGPSKKGS 292

Query: 255 GLKKLKAVGDTSGVSKAATPSSTIERS------VDIPTPAIHEEDPAEFGLE-------- 300
           G K  K VG TS  S+AAT S TI  +      V+ P     E D AE  LE        
Sbjct: 293 GKKASKVVGVTS--SEAATMSPTISPTINPSSHVESPIQLEEESDTAESDLENEDEVLSD 350

Query: 301 ---------------KIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPE 345
                           +E     WSV ++NDD +EVFD  + A    SN T K MNA  E
Sbjct: 351 EADTPISPSMRMADKNLEDNKATWSVFDANDDFDEVFDFTNDAN--PSNSTDKQMNAKLE 408

Query: 346 SASPPASISASNFSH-PKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQF-PQKPID 403
           ++S   +I+ S+  H P+P  + +R +++ S+   P   T NRY +SE +N+F P   +D
Sbjct: 409 TSS-LENINLSDIMHGPRPVLDSTRTNSVPSSLTEPPPETLNRYRKSEPRNRFMPTTSMD 467

Query: 404 NLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASNFRNSRLPNSISSD 463
           N G G   S R  PQF +Q +Q     + N+SPS G  +  GT+AS FRN +LP     +
Sbjct: 468 NKGPGATNSLRLGPQFLNQGKQ--ARSDTNSSPSTGRTRQDGTDASVFRNLKLP---LHE 522

Query: 464 VP--------NTRASSYGIFSNPTANAPTGQGMAAD--RTKEGIPTQG 501
           +P        ++   SYG FS P A AP     +A+  R++  +P QG
Sbjct: 523 IPMQEPSWPPSSPRPSYGNFSAPKAEAPGKLDPSANSARSEPRLPNQG 570

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489738|ref|XP_004158401.1| PREDICTED: uncharacterized LOC101207030 [Cucumis sativus]

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 239/585 (40%), Positives = 317/585 (54%), Gaps = 98/585 (16%)

Query: 1   MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKP------FWESAVKTPN 54
           MAF CR +QS+LK    QFKR+Y Q       ISH+   ++++       + E   + P 
Sbjct: 1   MAFFCRISQSKLKSFLDQFKRHYFQ-------ISHSAALDSRRTTHNVYGYVERIPRRPA 53

Query: 55  DFCNNVRFFAAPVQAQ--QKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALA 112
           DF +  RF+AAPVQ Q   KK+EK+ SGPRLNDKI A FVRLV D+GH ++S  +AL  A
Sbjct: 54  DFADKFRFYAAPVQFQGNAKKEEKDKSGPRLNDKIKADFVRLVSDDGHTILSLRDALKRA 113

Query: 113 RSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGK 172
           R L+ DLVEV +KANPPVCK+MDFH+EKY+K+++EKDR K+K ++ +KK   KEVRF+GK
Sbjct: 114 RELKLDLVEVQQKANPPVCKLMDFHREKYKKQIREKDRVKSKVEMVMKKAGHKEVRFTGK 173

Query: 173 IEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGP 232
            E+KDL+MKAD VKRLM++GYRVKC A    +  E +DLG  LSRL  LIED+++VE+GP
Sbjct: 174 TEEKDLRMKADMVKRLMERGYRVKCTA----RGGENQDLGALLSRLTALIEDVALVENGP 229

Query: 233 HVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSV-DIPTPAIHE 291
            VE+ QA+ I+RHVKFGPSKKG            G SKA+   +  E+ V +  TP +  
Sbjct: 230 SVEKGQAFIIVRHVKFGPSKKG------------GGSKASKVVANAEQKVQNGSTPLVST 277

Query: 292 EDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASP-- 349
            DP E G E  E+  T W+V  ++D  +E FDL D    +TS    K MN   +   P  
Sbjct: 278 VDP-EDGFESSEE--TTWTVDGTSDS-DEAFDLKDARNVITSTTATKKMNVVSDRDVPDS 333

Query: 350 -----------PASISASN-------FSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARS 391
                       +SI   N        +H +P  +    D+L S   GP +         
Sbjct: 334 GRTSSVPLFQQDSSIKTDNRPKKIEPMNHFQPPNSQGARDSLRS---GPQI--------R 382

Query: 392 EQKNQF-PQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPPNMNASPSMGEKKPIGTEASN 450
           E  N+F P    D    G R+S RSEPQ   QR    PPPN N SP+M E +      S 
Sbjct: 383 EPMNRFQPPNVTDRYSRGARDSLRSEPQIRDQRWH--PPPNTNFSPTMRESRQYDNNTSV 440

Query: 451 FRN-------SRLPNSISSDVPNTRASSYGIFSNPTANAPTGQGMAADRTKEGIPTQGTA 503
            RN       +  P        +   +S+GIFS+  +NAP          K+  P  G  
Sbjct: 441 SRNINHSSNSTSTPAPSHHSDSSPSKTSFGIFSSSNSNAP---------GKQDPPATGYQ 491

Query: 504 GVR-------PNQNSPGLKSDGS--QTPGPDN---GQRKFGIFSR 536
           G R        N N+PG   +     T   DN   GQ+ +GIFS+
Sbjct: 492 GNRGPPYTRLTNPNAPGAAENTKFPITNTEDNSNKGQKSWGIFSK 536

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545486|ref|XP_002513803.1| translation initiation factor if-3, putative [Ricinus communis] gi|223546889|gb|EEF48386.1| translation initiation factor if-3, putative [Ricinus communis]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 234/568 (41%), Positives = 312/568 (54%), Gaps = 98/568 (17%)

Query: 1   MAFSCRTNQSRLKHLTHQFKRYYIQ--VPSL-NHSISHTKICEAKKPFWESA----VKTP 53
           MAF  R NQS+LK L+HQ KR Y Q   PSL N++   +  C  + PF + +     K P
Sbjct: 1   MAFWHRLNQSKLKLLSHQLKRSYAQPLYPSLLNYTTKTSNSCRLENPFLDVSKRPTCKMP 60

Query: 54  NDFCNNVRFFAAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALAR 113
           ND CNNVRFFA   QA+ K +     GPRLND+I +QF+RLV DEGH VV R EAL  A+
Sbjct: 61  NDSCNNVRFFATSFQAKTKDN-----GPRLNDQITSQFIRLVTDEGHGVVPRREALERAK 115

Query: 114 SLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKI 173
            L+ DLVEVDR  +PPVCKIMDF+KEKY+++ KEKDR K+KS++TL+KGDCKEVRFS K 
Sbjct: 116 KLKLDLVEVDRNVDPPVCKIMDFNKEKYKQQSKEKDRVKSKSEVTLRKGDCKEVRFSAKT 175

Query: 174 EQKDLQMKADTVKRLMDKGYRVKCMALPVGKK----------EETED------------- 210
           EQKDL++KAD+V RLM++GYRVKCMAL   KK          + TE+             
Sbjct: 176 EQKDLKIKADSVIRLMERGYRVKCMALGSPKKGGRASKKHDGDLTEEEIAERIKQEEEEK 235

Query: 211 --LGGYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGV 268
             L   LSRL  L+ D  ++ESGP VE+KQAY ++RH KFG SKK G KK K V + +  
Sbjct: 236 EELRATLSRLTALMGDEFIIESGPRVEKKQAYVLVRHAKFGQSKKVGAKKFKDVQEVANA 295

Query: 269 SKAATPSSTIERSV----DIPTPAIHEEDPA-----EFGLEKIEKKNTPWSVSNSNDDLN 319
             +A  S  +  S+    D    A+  ED       +   E  E   T WS+++S D  +
Sbjct: 296 KSSANHSGPVANSLMAEKDSSESAVETEDKILSDEDDVPDEICEDNKTTWSIADSTDGFD 355

Query: 320 EVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASNFSHPKPAPNFSRADTLGSTPHG 379
             F      K   S +  + MN   ++ S   + S  N   PKPA +   +  L S+P  
Sbjct: 356 GAFAHGTDDKD-PSIYCREDMNIPRKANSSGLNFSIPNVFQPKPAQD---SQQLPSSPQ- 410

Query: 380 PSLGTGNRYARSEQKNQFPQKPIDNLGS----------GTRESFRSEPQFP----SQRRQ 425
           PSLGT NRY           KP  +LG+          GT   ++   QFP       R 
Sbjct: 411 PSLGTINRY-----------KPQPSLGTEKKYKPPPSLGTENRYKVRQQFPLNTSRDSRG 459

Query: 426 PPPPPN-----------------MNASPSMGEKKPIGTEASNFRNSRLPNSI--SSDVP- 465
           P  P +                 +N + S+GE KP+ T++S FRN +LP  +    DVP 
Sbjct: 460 PDKPASFGFEPRLSPRSGHSQSEINVTSSIGESKPVRTDSSAFRNMKLPPEMLKQLDVPS 519

Query: 466 --NTRASSYGIFSNPTANAPTGQGMAAD 491
             ++ ASS+G+FS+P A++P  Q + A+
Sbjct: 520 GTSSPASSFGMFSSPKASSPGKQDVTAE 547

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458680|ref|XP_004147075.1| PREDICTED: uncharacterized protein LOC101207030 [Cucumis sativus]

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 244/605 (40%), Positives = 324/605 (53%), Gaps = 108/605 (17%)

Query: 1   MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKP------FWESAVKTPN 54
           MAF CR +QS+LK    QFKR+Y Q       ISH+   ++++       + E   + P 
Sbjct: 1   MAFFCRISQSKLKSFLDQFKRHYFQ-------ISHSAALDSRRTTHNVYGYVERIPRRPA 53

Query: 55  DFCNNVRFFAAPVQAQ--QKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALA 112
           DF +  RF+AAPVQ Q   KK+EK+ SGPRLNDKI A FVRLV D+GH ++S  +AL  A
Sbjct: 54  DFADKFRFYAAPVQFQGNAKKEEKDKSGPRLNDKIKADFVRLVSDDGHTILSLRDALKRA 113

Query: 113 RSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGK 172
           R L+ DLVEV +KANPPVCK+MDFH+EKY+K+++EKDR K+K ++ +KK   KEVRF+GK
Sbjct: 114 RELKLDLVEVQQKANPPVCKLMDFHREKYKKQIREKDRVKSKVEMVMKKAGHKEVRFTGK 173

Query: 173 IEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGP 232
            E+KDL+MKAD VKRLM++GYRVKC A    +  E +DLG  LSRL  LIED+++VE+GP
Sbjct: 174 TEEKDLRMKADMVKRLMERGYRVKCTA----RGGENQDLGALLSRLTALIEDVALVENGP 229

Query: 233 HVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSV-DIPTPAIHE 291
            VE+ QA+ I+RHVKFGPSKKG            G SKA+   +  E+ V +  TP +  
Sbjct: 230 SVEKGQAFIIVRHVKFGPSKKG------------GGSKASKVVANAEQKVQNGSTPLVST 277

Query: 292 EDPAEFGLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASP-- 349
            DP E G E  E+  T W+V  ++D  +E FDL D    +TS    K MN   +   P  
Sbjct: 278 VDP-EDGFESSEE--TTWTVDGTSDS-DEAFDLKDDRNVITSTTATKKMNVVSDRDVPDS 333

Query: 350 -----------PASISASN-------FSHPKPAPNFSRADTLGSTPH--------GPSLG 383
                       +SI   N        +H +P  +    D+L S P          P   
Sbjct: 334 GRTSSVPLFQQDSSIKTDNRPKKIEPMNHFQPPNSQGARDSLRSGPQIREPVNRFQPPNA 393

Query: 384 TGNRYA-------RSEQK-----NQF-PQKPIDNLGSGTRESFRSEPQFPSQRRQPPPPP 430
           T +RY+       RSE +     N+F P    D    G R+S RSEPQ   QR    PPP
Sbjct: 394 T-DRYSQGARDSLRSEPQIREPMNRFQPPNVTDRYSRGARDSLRSEPQIRDQRWH--PPP 450

Query: 431 NMNASPSMGEKKPIGTEASNFRN-------SRLPNSISSDVPNTRASSYGIFSNPTANAP 483
           N N SP+M E +      S  RN       +  P        +   +S+GIFS+  +NAP
Sbjct: 451 NTNFSPTMRESRQYDNNTSVSRNINHSSNSTSTPAPSHHSDSSPSKTSFGIFSSSNSNAP 510

Query: 484 TGQGMAADRTKEGIPTQGTAGVR-------PNQNSPGLKSDGS--QTPGPDN---GQRKF 531
                     K+  P  G  G R        N N+PG   +     T   DN   GQ+ +
Sbjct: 511 ---------GKQDPPATGYQGNRGPPYTRLTNPNAPGAAENTKFPITNTEDNSNKGQKSW 561

Query: 532 GIFSR 536
           GIFS+
Sbjct: 562 GIFSK 566

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534427|ref|XP_003535756.1| PREDICTED: uncharacterized protein LOC100306622 [Glycine max]

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 288/577 (49%), Gaps = 83/577 (14%)

Query: 1   MAFSCRTNQSRLKHLTHQFKRYYIQVPSLNHSISHTKICEAKKPFWESAVK-TPNDFCNN 59
           MAF  R     LK L  QF+R Y+  P      S  K      P   S     P    N 
Sbjct: 1   MAFWHRIRNPNLKTLCIQFQRCYVHRPH----ASTPKPFPVDIPHPNSVFHGRPTSVFNT 56

Query: 60  VRFFAAPVQAQQKKDEKETSGP-RLNDKINAQFVRLVLDEGHK-VVSRHEALALARSLQC 117
           VRFFAAPVQ Q K +  E S   RLN+KI A +VRLV D+GH  ++ R EAL  A++L+ 
Sbjct: 57  VRFFAAPVQYQVKHNNVEDSSELRLNEKIKAPYVRLVADDGHHSILPRFEALEHAKTLKL 116

Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
           DLVEVD+ A PPVCKIMDFHK+ Y+++ +EK+RAK+++++TL+K D KEVRFS K E KD
Sbjct: 117 DLVEVDKNAKPPVCKIMDFHKQMYRRQEREKERAKSRAEMTLRK-DVKEVRFSEKTEAKD 175

Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERK 237
           L+ KAD +K+LM+KGYRVKC     GK  E +DL    S ++ L+ED+ +VESGPH+ +K
Sbjct: 176 LKNKADMIKKLMEKGYRVKCKV--SGK--ENQDLTVLFSPILALMEDVCIVESGPHMAKK 231

Query: 238 QAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERSVDIPTPAIHEEDPAEF 297
            A+ I+RH+K+G SKKGG KKL+        +   T    +E S    + +I  E  AE 
Sbjct: 232 DAFMIVRHIKYGLSKKGG-KKLQ------NATNVTTQEGDMEISTANSSDSIEYESHAES 284

Query: 298 GLEKIEKKNTPWSVSNSNDDLNEVFDLADGAKGLTSNFTPKVMNAAPESASPPASISASN 357
           G E  E+      +S+ N        +      +T++   +  NAAPE ASP   +S + 
Sbjct: 285 GFETEEE-----VLSDGNKLSKSSLSVFSNNVNMTASPNNQT-NAAPE-ASP---VSENR 334

Query: 358 FSHPKPAPNFSRADTLGSTPHGPSLGTGNRYARSEQKNQFPQKP----IDNLGSGTRESF 413
           +         S+ + + S    P   T NRY R E + +F Q      ++  G G R++F
Sbjct: 335 YR--------SQENNVQSNAQVPPAVTENRYKRIEPRGRFQQTSNNTCMNYQGPGARDAF 386

Query: 414 RSEPQFPSQRRQPPPPPNMNASPSMGEKK----PIGTEAS-------------------- 449
           RS P  P+  R    P N N +P +   +    P G   S                    
Sbjct: 387 RSPP--PNWNRTRQAPVNANLNPRIENNRLAFTPPGPRHSMPSHENICNPPPNAPNTPRP 444

Query: 450 ---NFRNSRLPNSISSDVPNT-RASSYGIFSNPTANAPTGQGMAADRT----------KE 495
              NF +      +   VPNT R+SSYG FS P    P   G    +            E
Sbjct: 445 GYGNFSSPSEGIPMHHGVPNTPRSSSYGNFSGPNEGIPRHPGAPITQRSSSYGNFSAPNE 504

Query: 496 GIPTQGTAGVRPNQNSPGLKS--DGSQTPGPDNGQRK 530
           GIP   +A   P  +S G  S  +G +T G   G  +
Sbjct: 505 GIPRHPSAPNTPRPSSYGNFSTPNGHETQGVKAGMHR 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326487826|dbj|BAJ89752.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 134/243 (55%), Positives = 167/243 (68%), Gaps = 13/243 (5%)

Query: 61  RFFAAPVQAQQK--KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCD 118
           R FAAP Q  +K  KD  + +G RLN+ I A F+RLV D GH VV RHEAL +A  +  D
Sbjct: 44  RSFAAPPQHVKKVFKDADDDAGHRLNNDITAPFLRLVTDGGHDVVPRHEALQMAARMGLD 103

Query: 119 LVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDL 178
           LVEVDRK+NPPVCKIMDFHKEKY K++++K R K KS I L+ GD KEVRF  K E KD+
Sbjct: 104 LVEVDRKSNPPVCKIMDFHKEKYNKDVQQKQRLKTKSAIALRGGDIKEVRFKAKTEIKDM 163

Query: 179 QMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERKQ 238
           ++KAD + RLM++GY+VKCMA+P G   E EDLGG LSRL+ LI+D+  VESGPH++ K 
Sbjct: 164 KVKADAITRLMERGYKVKCMAMPAG--NEAEDLGGPLSRLLGLIQDVCTVESGPHLDSKH 221

Query: 239 AYAIIRHVKFGPSKKGGLKKLKAVGDTS-GVSKAATPSSTIERSVDIPTPAIHEEDPAEF 297
           AY I+RHVKF  +KKGG K  +A+ D S G   AAT  S+        T A   ++  E 
Sbjct: 222 AYVIVRHVKFA-TKKGGKKASQAIEDASKGTPHAATSESSA-------TSADSGDETNEH 273

Query: 298 GLE 300
           GLE
Sbjct: 274 GLE 276

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357138356|ref|XP_003570759.1| PREDICTED: uncharacterized protein LOC100844078 [Brachypodium distachyon]

 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/192 (59%), Positives = 147/192 (76%), Gaps = 5/192 (2%)

Query: 60  VRFFAAP---VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQ 116
            R FAAP   V+   K ++ + +GPR+N+ I A F+RLV D+GH VV RHEAL LA  + 
Sbjct: 48  CRPFAAPPQHVKKNTKDEDDDAAGPRINNDITAPFLRLVTDQGHDVVPRHEALQLAARMG 107

Query: 117 CDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQK 176
            DLVEV RK++PPVCKIMDFHKE+Y K++KEK+R K KS I L+ G+ KEVRF GK E K
Sbjct: 108 MDLVEVHRKSDPPVCKIMDFHKERYNKDVKEKERLKTKSAIVLRGGENKEVRFKGKTEIK 167

Query: 177 DLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVER 236
           DL++KAD + RLM++GYRVKCMA+P G +E  EDLGG LSRL+ LI+D+ +VESGPH++ 
Sbjct: 168 DLKVKADAITRLMERGYRVKCMAMPAGNEE--EDLGGPLSRLLGLIQDVCIVESGPHLDS 225

Query: 237 KQAYAIIRHVKF 248
           K AY I+RHVKF
Sbjct: 226 KHAYVIVRHVKF 237

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242084348|ref|XP_002442599.1| hypothetical protein SORBIDRAFT_08g022730 [Sorghum bicolor] gi|241943292|gb|EES16437.1| hypothetical protein SORBIDRAFT_08g022730 [Sorghum bicolor]

 Score =  241 bits (616), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 125/224 (55%), Positives = 156/224 (69%), Gaps = 5/224 (2%)

Query: 60  VRFFAAP--VQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQC 117
            R FAAP   Q  +K+ ++E  GPRLN+ I A  VRLV DEGH VV  HEAL LA  +  
Sbjct: 50  CRHFAAPPGTQVNKKRGKEEDEGPRLNNAITAPLVRLVTDEGHNVVPLHEALQLASRMDM 109

Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
           DLVEVDRK  PP  KIMDFHKE Y+KE K K+R KAKS I L+ G+ KEVRF GK E KD
Sbjct: 110 DLVEVDRKLYPPAVKIMDFHKEMYKKETKVKERLKAKSAIVLRGGENKEVRFKGKTELKD 169

Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERK 237
           L +KAD + RLM++GYRVKCMA+P G   E EDLG  LSRL+ LI+D+ +VESGPH++ K
Sbjct: 170 LMVKADGITRLMERGYRVKCMAMPSG--NEGEDLGTPLSRLLGLIQDVCIVESGPHLDSK 227

Query: 238 QAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAATPSSTIERS 281
            AY I+RHVKF  +KKGG K  +A+ ++   + +A   S ++ S
Sbjct: 228 HAYVIVRHVKFA-TKKGGKKASQAIEESGKGTSSAVSESIVDGS 270

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115443613|ref|NP_001045586.1| Os02g0101100 [Oryza sativa Japonica Group] gi|41052888|dbj|BAD07800.1| translation initiation factor 3 (IF-3)-like protein [Oryza sativa Japonica Group] gi|41053222|dbj|BAD08183.1| translation initiation factor 3 (IF-3)-like protein [Oryza sativa Japonica Group] gi|113535117|dbj|BAF07500.1| Os02g0101100 [Oryza sativa Japonica Group] gi|215695533|dbj|BAG90724.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189858|gb|EEC72285.1| hypothetical protein OsI_05453 [Oryza sativa Indica Group] gi|222621989|gb|EEE56121.1| hypothetical protein OsJ_04988 [Oryza sativa Japonica Group]

 Score =  238 bits (607), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/189 (60%), Positives = 146/189 (77%), Gaps = 5/189 (2%)

Query: 60  VRFFAAPVQAQQK--KDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQC 117
            R FAAP Q  ++  KD+ +  GPR+N+ I + FVRLV D+GH VV RHEAL LA  +  
Sbjct: 43  ARTFAAPPQVMKRSTKDD-DDDGPRINNDITSPFVRLVTDQGHSVVPRHEALQLAARMDL 101

Query: 118 DLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKD 177
           DLVEV RK++PPVCKIMDFHKEKY+K++KEK+R K KS I L+ G+ KEVRF GK E KD
Sbjct: 102 DLVEVHRKSDPPVCKIMDFHKEKYKKDVKEKERLKTKSAIVLRGGENKEVRFKGKTELKD 161

Query: 178 LQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGYLSRLIDLIEDISVVESGPHVERK 237
           L++KAD + RLM++GYRVKCMA+P G +E  EDLGG LSRL+ LI+D+ +VESGPH++ K
Sbjct: 162 LKVKADGITRLMERGYRVKCMAMPSGNEE--EDLGGPLSRLLGLIQDVCIVESGPHLDSK 219

Query: 238 QAYAIIRHV 246
            AY I+RHV
Sbjct: 220 HAYVIVRHV 228

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
TAIR|locus:2036309	520	AT1G34360 [Arabidopsis thalian	0.447	0.461	0.46	1.1e-50
TIGR_CMR|SPO_2638	182	SPO_2638 "translation initiati	0.304	0.895	0.337	2.9e-19
TIGR_CMR|GSU_1516	172	GSU_1516 "translation initiati	0.291	0.906	0.353	9.7e-18
TIGR_CMR|BA_4819	167	BA_4819 "translation initiatio	0.291	0.934	0.329	2.1e-17
TIGR_CMR|CHY_1578	169	CHY_1578 "translation initiati	0.300	0.952	0.319	2.7e-17
TIGR_CMR|CJE_0200	172	CJE_0200 "translation initiati	0.291	0.906	0.329	4.4e-17
UNIPROTKB|P0A707	180	infC "protein chain initiation	0.302	0.9	0.331	1.2e-16
TIGR_CMR|APH_1263	172	APH_1263 "translation initiati	0.283	0.883	0.351	3.2e-16
UNIPROTKB|P65144	185	infC "Translation initiation f	0.285	0.827	0.310	1.9e-15
UNIPROTKB|Q0C535	180	infC "Translation initiation f	0.304	0.905	0.315	2.9e-14

TAIR|locus:2036309 AT1G34360 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
 Identities = 115/250 (46%), Positives = 151/250 (60%)

Query:     8 NQSRLKHLTHQFKR-YYIQV--PSLNHSISHT-KICEAKKPFWESAVKTPNDFCNNVRFF 63
             N+S LK+ ++Q  R YY QV   S  H +  T K+     P  +   +  N F  N+RF 
Sbjct:     8 NRSYLKYASNQLTRNYYTQVCLASSTHVVKQTTKLSSFDIPNSDICTRPSNIF-QNLRFL 66

Query:    64 AAPVQAQQKKDEKETSGPRLNDKINAQFVRLVLDEGHKVVSRHEALALARSLQCDLVEVD 123
             A   Q ++K+ E ++ GPRLN+KI   +VRLV +EGH VVS  EAL  A+ LQCDLVEV 
Sbjct:    67 ATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKELQCDLVEVQ 126

Query:   124 RKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKAD 183
             R A PPVCKI+ +  E Y+K    K+RAKAK    ++  D KE+RF+ KIE KDL+ K+D
Sbjct:   127 RDAKPPVCKIVKYSLELYKKAKVGKERAKAKRAEAIRP-DIKEIRFTPKIEAKDLKFKSD 185

Query:   184 TVKRLMDKGYRVKCMALPVGKKE---ETEDLGGYLSRLIDLIEDISVVESGPHVERKQAY 240
                +LM+ GYRVKC+A+P   K    E E L   L R    I D ++VES P  +RK A 
Sbjct:   186 QALKLMESGYRVKCLAVPDKDKHKELEPEKLLELLFRFTCFIGD-ALVESWPEADRKGAV 244

Query:   241 AIIRHVKFGP 250
              I+RH KFGP
Sbjct:   245 VIVRHAKFGP 254

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA;ISS

TIGR_CMR|SPO_2638 SPO_2638 "translation initiation factor IF-3" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 237 (88.5 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 58/172 (33%), Positives = 99/172 (57%)

Query:    75 EKETSGPRLNDKINAQFVRLVLDEGHKVVSRH--EALALARSLQCDLVEVDRKANPPVCK 132
             +++T GPR+NDKI A  +RL+  +G  V   H  +A+A+A     DLVE+   A PPVCK
Sbjct:    11 QRDT-GPRVNDKIRASEIRLIGADGENVGVVHPAKAMAMAEEAGLDLVEISPNATPPVCK 69

Query:   133 IMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKG 192
             IMDF K KY+++ +E + A+ K  I     + KEV+F    +  D ++K   V + ++ G
Sbjct:    70 IMDFGKYKYEQQKRESE-ARKKQKII----EVKEVKFRPNTDTHDYEVKMRNVYKFLENG 124

Query:   193 YRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
              +VK      G++   ++LG   L R+ + ++++  +E+ P +E +Q   +I
Sbjct:   125 DKVKVTLRFRGREMAHQNLGRELLERVAEDVKEMGKIENMPKMEGRQMIMMI 176

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

TIGR_CMR|GSU_1516 GSU_1516 "translation initiation factor IF-3" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 223 (83.6 bits), Expect = 9.7e-18, P = 9.7e-18
 Identities = 58/164 (35%), Positives = 93/164 (56%)

Query:    83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
             +N  I A+ VR+V  +  +  ++S  EALALA + Q DLVEV   A PPVC+IMD+ K K
Sbjct:     8 INQAIRAREVRVVGADSEQLGIMSLQEALALAEARQLDLVEVSPTAVPPVCRIMDYGKFK 67

Query:   141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
             YQ+  K ++  K +S + +K     EV+   K ++ DL  K   V+R +++G + K   +
Sbjct:    68 YQQSKKLQEARKKQSHVQVK-----EVKLRPKTDEHDLMTKIKHVRRFIEEGNKAKVTLV 122

Query:   201 PVGKKEETEDLGGY-LSRLIDLIEDISVVESGPHVERKQAYAII 243
               G++    + G   L R+   +EDI+VVE  P +E +  + I+
Sbjct:   123 FRGREITHLEFGSRALDRVAAELEDIAVVEFKPKMEGRSMFMIV 166

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

TIGR_CMR|BA_4819 BA_4819 "translation initiation factor IF-3" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 220 (82.5 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 54/164 (32%), Positives = 94/164 (57%)

Query:    83 LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
             +N++I A+ VRLV   G +  + SR++AL LA +L  DLV V   A PPVC+IMD+ K +
Sbjct:     3 INEQIRAREVRLVGANGDQLGIKSRNDALDLAANLNLDLVLVAPNAKPPVCRIMDYGKFR 62

Query:   141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
             ++++ KEK++ K +  I++K     EVR S  I++ D   K     + ++KG +VK    
Sbjct:    63 FEQQKKEKEQRKNQKVISMK-----EVRLSPTIDEHDFNTKLRNAIKFLEKGDKVKASIR 117

Query:   201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
               G+    +++G   L R  +   ++S +ES P +E +  + ++
Sbjct:   118 FKGRAITHKEIGQRVLDRFSEACAEVSTIESKPKMEGRSMFLVL 161

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

TIGR_CMR|CHY_1578 CHY_1578 "translation initiation factor IF-3" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 219 (82.2 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 54/169 (31%), Positives = 94/169 (55%)

Query:    78 TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
             T   R+N++I A+ VR+V ++G +  ++   EAL +A  ++ DLVE+   A PPVCKIMD
Sbjct:     2 TKDLRINEEIRAKEVRVVKEDGTQLGIMPLKEALKIAEEMELDLVEIAPTAKPPVCKIMD 61

Query:   136 FHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRV 195
             + K +YQ+  KEK+  K +  I +K     E++    IE+ D Q+K   V R ++ G +V
Sbjct:    62 YGKYRYQQSKKEKEARKKQKIINVK-----EIKIRPTIEEHDFQVKLRNVLRFLEDGDKV 116

Query:   196 KCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
             K   +  G++    ++    L+++   +  I+VVE    +E +    I+
Sbjct:   117 KVTVMFRGRELSHPEIAYELLNKMAQEVGSIAVVERPAKLEGRNMIMIL 165

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

TIGR_CMR|CJE_0200 CJE_0200 "translation initiation factor IF-3" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 217 (81.4 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 54/164 (32%), Positives = 89/164 (54%)

Query:    83 LNDKINAQFVRLVLDEG--HKVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
             LN++I A  +R V D+G  + ++S  EAL +A  L  DLV +   A PPVCKIMD+ K +
Sbjct:     9 LNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLGLDLVMIAADAKPPVCKIMDYGKFR 68

Query:   141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
             YQ+E K+K+ AK K  +     D KE++ S KI Q D+  K       +++G  V+    
Sbjct:    69 YQQEKKQKE-AKKKQKVI----DIKEIKLSVKIAQNDINYKVKHALEFLEQGKHVRFRVF 123

Query:   201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
               G++  T + G   L ++  +IE+ +  +  P+ E +    ++
Sbjct:   124 LKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEGRYVNMLV 167

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|P0A707 infC "protein chain initiation factor IF-3" [Escherichia coli K-12 (taxid:83333)]

 Score = 213 (80.0 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 57/172 (33%), Positives = 97/172 (56%)

Query:    77 ETSGP-RLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
             +T+ P R+N +I AQ VRL   EG +  +VS  EAL  A     DLVE+   A PPVC+I
Sbjct:     8 QTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALEKAEEAGVDLVEISPNAEPPVCRI 67

Query:   134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
             MD+ K  Y+K    K++ K +  I +K     E++F    ++ D Q+K  ++ R +++G 
Sbjct:    68 MDYGKFLYEKSKSSKEQKKKQKVIQVK-----EIKFRPGTDEGDYQVKLRSLIRFLEEGD 122

Query:   194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGP-HVERKQAYAII 243
             + K      G++   + +G   L+R+ D +++++VVES P  +E +Q   ++
Sbjct:   123 KAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVL 174

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0032790 "ribosome disassembly" evidence=IMP

GO:0009409 "response to cold" evidence=IDA

GO:0006413 "translational initiation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA;IDA

GO:0043022 "ribosome binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|APH_1263 APH_1263 "translation initiation factor IF-3" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 209 (78.6 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 57/162 (35%), Positives = 87/162 (53%)

Query:    77 ETSGPRLNDKINAQFVRLVLDEGHKV--VSRHEALALARSLQCDLVEVDRKANPPVCKIM 134
             +  GPR+ND I  + VRLV + G  V  V   EALA+A     DLVEV  +   PVCK+ 
Sbjct:     2 DKKGPRINDAITTKRVRLVDETGTMVGVVDIEEALAVAARAGMDLVEVVSEGEYPVCKVY 61

Query:   135 DFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYR 194
             ++ K+KY K+ K     K +S         KE++F   IE  D  +K + +K  ++KG +
Sbjct:    62 NYSKQKYNKK-KHGVTKKQRSSAV------KELKFRINIEDNDYNIKLNNLKSFIEKGNK 114

Query:   195 VKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVE 235
             VK     VG++ + +++G   L RL+   E I+  ES P ++
Sbjct:   115 VKVSLRFVGRELQYKEVGLDILDRLVSDTEGIAKPESSPRMD 156

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

UNIPROTKB|P65144 infC "Translation initiation factor IF-3" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 202 (76.2 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 50/161 (31%), Positives = 91/161 (56%)

Query:    83 LNDKINAQFVRLVLDEGHKVVSR--HEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
             +ND+I  + VRL+  EG ++  +   EA ALA +   DLV +  +A PPV KIMD+ K K
Sbjct:    20 INDEIRVREVRLIGLEGEQLGIKPLSEAQALADNANVDLVLIQPQAKPPVAKIMDYGKFK 79

Query:   141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
             ++ + K+K++ K +S +T+K     EVR S  I++ D   K    ++ ++KG +VK    
Sbjct:    80 FEYQKKQKEQRKKQSVVTVK-----EVRLSPTIDKGDFDTKLRNARKFLEKGNKVKVSIR 134

Query:   201 PVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAY 240
               G+    +++G   L+   +  +DI+++E    ++ +Q +
Sbjct:   135 FKGRMITHKEIGAKVLAEFAEATQDIAIIEQRAKMDGRQMF 175

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0C535 infC "Translation initiation factor IF-3" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 191 (72.3 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 54/171 (31%), Positives = 89/171 (52%)

Query:    76 KETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
             K+ +GPR+N++I A  V L+ + G K  V+    AL  AR    DLVEV      PV KI
Sbjct:    12 KKQAGPRINEEIRAAKVLLIDENGEKQGVMPLAAALDAAREASMDLVEVSAGQETPVVKI 71

Query:   134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
             +D+ K +++ E K+K  A+ K     K  + KE++    I+  D ++KA  + R  ++G 
Sbjct:    72 LDYGKLRFE-ERKKKAAARKKQ----KSSELKEIKIRPNIDTHDYEVKARAIARFFEEGD 126

Query:   194 RVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
             +VK      G++   + LG   L ++    E+ + VE  P +E KQ   ++
Sbjct:   127 KVKITLRFRGREMAHQHLGMELLEKVKKDFEETAKVELEPKLEGKQMTMVL 177

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036146001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (676 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	536
PRK00028	177	PRK00028, infC, translation initiation factor IF-3	5e-35
COG0290	176	COG0290, InfC, Translation initiation factor 3 (IF	2e-33
TIGR00168	165	TIGR00168, infC, translation initiation factor IF-	7e-27
pfam05198	76	pfam05198, IF3_N, Translation initiation factor IF	7e-26
CHL00199	182	CHL00199, infC, translation initiation factor 3; P	1e-15
pfam00707	87	pfam00707, IF3_C, Translation initiation factor IF	7e-09

>gnl|CDD|234582 PRK00028, infC, translation initiation factor IF-3; Reviewed

 Score =  129 bits (326), Expect = 5e-35
 Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 13/181 (7%)

Query: 76  KETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKI 133
           K+   PR+N++I A+ VRL+ D+G +  +VS  EAL LA     DLVE+   A PPVCKI
Sbjct: 6   KKKKEPRINEQIRAREVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKPPVCKI 65

Query: 134 MDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGY 193
           MD+ K KY+++ K+K+ AK K     K  + KE++F  KI++ D + K    +R ++KG 
Sbjct: 66  MDYGKFKYEQKKKQKE-AKKKQ----KVIEVKEIKFRPKIDEHDYETKLKHARRFLEKGD 120

Query: 194 RVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSK 252
           +VK      G++   ++LG   L R+ + +EDI+ VE  P +E +Q   ++      P K
Sbjct: 121 KVKVTLRFRGREIAHKELGMELLERVAEDLEDIAKVEQEPKMEGRQMIMVL-----APKK 175

Query: 253 K 253
           K
Sbjct: 176 K 176

Length = 177

>gnl|CDD|223367 COG0290, InfC, Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]

 Score =  125 bits (315), Expect = 2e-33
 Identities = 60/166 (36%), Positives = 98/166 (59%), Gaps = 8/166 (4%)

Query: 81  PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
           P +N++I A+ VRL+ ++G +  +VS  EAL LA     DLVE+   A PPVCKIMD+ K
Sbjct: 10  PLINEEIRAREVRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYGK 69

Query: 139 EKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCM 198
            KY+++ K K+  K +  I +     KE++   KI++ D + K    +R ++KG +VK  
Sbjct: 70  FKYEQKKKAKEAKKKQKQIQV-----KEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVT 124

Query: 199 ALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAII 243
               G++   ++LG   L R+ + +EDI+ VES P +E +Q   ++
Sbjct: 125 IRFRGREMAHQELGVKVLERVAEDLEDIAKVESEPKMEGRQMIMVL 170

Length = 176

>gnl|CDD|129272 TIGR00168, infC, translation initiation factor IF-3

 Score =  106 bits (266), Expect = 7e-27
 Identities = 58/174 (33%), Positives = 90/174 (51%), Gaps = 12/174 (6%)

Query: 83  LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
           +N++I    VRL+ + G +  +VSR EAL +A     DLV +   A PPVCKIMD+ K K
Sbjct: 1   INERIRFNEVRLIDENGEQLGIVSREEALEIAEEAGLDLVLISPNAKPPVCKIMDYGKYK 60

Query: 141 YQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMAL 200
           Y++E K+K+  K +  I +     KEV+    I++ DLQ K     R ++KG +VK    
Sbjct: 61  YEQEKKKKEAKKNQKIIQV-----KEVKMRPTIDEHDLQFKLKQAIRFLEKGDKVKFTVR 115

Query: 201 PVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
             G++    +LG   L R    + D++ VE  P     +  +++      P KK
Sbjct: 116 FRGRESTHIELGEKVLDRFYTDVADVAEVEKPPTKSEGRMMSML----LAPKKK 165

infC uses abnormal initiation codons such as AUA, AUC, and CUG which render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression [Protein synthesis, Translation factors]. Length = 165

>gnl|CDD|191228 pfam05198, IF3_N, Translation initiation factor IF-3, N-terminal domain

 Score =  100 bits (251), Expect = 7e-26
 Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 2/72 (2%)

Query: 80  GPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFH 137
            PR+N++I A+ VRL+ ++G +  VVSR EAL LA     DLVE+   A+PPVCKIMD+ 
Sbjct: 3   KPRINEEIRAREVRLIDEDGEQLGVVSRAEALRLAEEKGLDLVEISPNADPPVCKIMDYG 62

Query: 138 KEKYQKELKEKD 149
           K KY+++ K K+
Sbjct: 63  KFKYEQQKKAKE 74

Length = 76

>gnl|CDD|164575 CHL00199, infC, translation initiation factor 3; Provisional

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 42/176 (23%), Positives = 91/176 (51%), Gaps = 8/176 (4%)

Query: 71  QKKDEKETSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANP 128
           +   +     P +N++I    VR++ D G +  + +  +A+ LA +   DLV V  K++P
Sbjct: 6   KNSKKLSRDLPLINERIRFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDP 65

Query: 129 PVCKIMDFHKEKYQKELKEKDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRL 188
           PVC+I+D+ K K+ +E + K+  K + + ++     KEV+   KIE+ D +++ +   + 
Sbjct: 66  PVCRIIDYGKYKFTQEKRAKEAKKKQHNSSI-----KEVKMRYKIEEHDYKVRINQAFKF 120

Query: 189 MDKGYRVKCMALPVGKKEETEDLG-GYLSRLIDLIEDISVVESGPHVERKQAYAII 243
           +  G +VK      G++ +  +L    L+++   +  I+ ++  P  + +    I+
Sbjct: 121 LQAGDKVKATLTFRGREIQHLNLAINLLNKMAADLSSIAEIQQPPSQDGRNMIMIL 176

Length = 182

>gnl|CDD|201407 pfam00707, IF3_C, Translation initiation factor IF-3, C-terminal domain

 Score = 52.4 bits (127), Expect = 7e-09
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 15/87 (17%)

Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC--------MALPVGKKEETEDLGGYLS 216
           KE++   KI++ DL++K    ++ ++KG +VK         +A      E   +L   L 
Sbjct: 5   KEIKLRPKIDEHDLEVKLKHARKFLEKGDKVKVTIRFRGREIA----HPELGREL---LD 57

Query: 217 RLIDLIEDISVVESGPHVERKQAYAII 243
           R  + +EDI+ VE  P +E +    I+
Sbjct: 58  RFAEDLEDIATVEKPPKMEGRNMTMIL 84

Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	536
COG0290	176	InfC Translation initiation factor 3 (IF-3) [Trans	100.0
CHL00199	182	infC translation initiation factor 3; Provisional	100.0
TIGR00168	165	infC translation initiation factor IF-3. render it	100.0
PRK00028	177	infC translation initiation factor IF-3; Reviewed	100.0
PF05198	76	IF3_N: Translation initiation factor IF-3, N-termi	99.91
PF00707	88	IF3_C: Translation initiation factor IF-3, C-termi	99.9
PF14877	181	mIF3: Mitochondrial translation initiation factor	98.14

>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.3e-54  Score=406.69  Aligned_cols=165  Identities=38%  Similarity=0.620  Sum_probs=159.9

Q ss_pred             CCCCCCCCCCCceEEEEeCCCC--ccccHHHHHHHHHhcCCcEEEecCCCCCCeEEEecchhHHHHHHHHHHHHHhhccc
Q 009379           79 SGPRLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSD  156 (536)
Q Consensus        79 d~~riNEeI~a~~VRLIdedG~--GVms~~EAL~lAk~~~LDLVeVsp~a~PPVCKImDYgK~kYEqqKKeKEaKKkqkk  156 (536)
                      +.+++|++|++++|||||++|+  |++++.|||++|++.+||||+|+++++||||||||||||+||++||++|++|+|+.
T Consensus         8 ~~~~iN~~Ir~~evrlIg~~GeqlGiv~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYGKfkye~~KK~kEakKkQk~   87 (176)
T COG0290           8 KEPLINEEIRAREVRLIGEDGEQLGIVSIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYGKFKYEQKKKAKEAKKKQKQ   87 (176)
T ss_pred             ccccccccccccEEEEECCCCcEEcceeHHHHHHHHHHcCCCEEEECCCCCCCeeEeeeccchHHHHHHHHHHHhhcCce
Confidence            4689999999999999999996  99999999999999999999999999999999999999999999999999999887


Q ss_pred             cccccccceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCcccC
Q 009379          157 ITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE  235 (536)
Q Consensus       157 ~~~r~~k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kPk~E  235 (536)
                      +     .+|||+|+++|++|||++|++++++||++|++|||+|+|||||++|+|+|. +|++|.++|+|+|.+|+.|+++
T Consensus        88 i-----~vKEik~rp~Id~hD~~~K~k~~~rFLe~GdkVKvtirfrGRe~~h~elG~~~l~r~~~~~~~~~~ve~~pk~e  162 (176)
T COG0290          88 I-----QVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELGVKVLERVAEDLEDIAKVESEPKME  162 (176)
T ss_pred             E-----EEEEEEeecCcCcchHHHHHHHHHHHHHCCCeEEEEEEEechhhhhHHHHHHHHHHHHHHhhhhheeecccccC
Confidence            7     799999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             CceEEEEEecCCCCCCCC
Q 009379          236 RKQAYAIIRHVKFGPSKK  253 (536)
Q Consensus       236 GK~m~miL~P~k~~P~kK  253 (536)
                      |++|+|+|     +|+++
T Consensus       163 gr~m~m~l-----aPkkk  175 (176)
T COG0290         163 GRQMIMVL-----APKKK  175 (176)
T ss_pred             CceEEEEE-----cccCC
Confidence            99999998     77765

>CHL00199 infC translation initiation factor 3; Provisional

Probab=100.00  E-value=1.8e-51  Score=389.52  Aligned_cols=167  Identities=25%  Similarity=0.436  Sum_probs=158.8

Q ss_pred             ccccCCCCCCCCCCCceEEEEeCCCC--ccccHHHHHHHHHhcCCcEEEecCCCCCCeEEEecchhHHHHHHHHHHHHHh
Q 009379           75 EKETSGPRLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAK  152 (536)
Q Consensus        75 ~~d~d~~riNEeI~a~~VRLIdedG~--GVms~~EAL~lAk~~~LDLVeVsp~a~PPVCKImDYgK~kYEqqKKeKEaKK  152 (536)
                      +.+.+++++|++|++++|||||++|+  |+|++.|||++|++.+||||+|+++++|||||||||+||+||++||+++++|
T Consensus        10 ~~~~~~~~iNe~I~~~~VrlI~~~G~~lGv~~~~eAl~~A~~~~lDLVeVs~~a~PPVCKImdygK~kye~~KK~keakK   89 (182)
T CHL00199         10 KLSRDLPLINERIRFPKVRVIDDSGEQLGIFTSEQAIQLAANQGLDLVLVSEKSDPPVCRIIDYGKYKFTQEKRAKEAKK   89 (182)
T ss_pred             hcccccCCcCcccCCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCeEEEeehHHHHHHHHHHHHHHHh
Confidence            34446799999999999999999996  9999999999999999999999999999999999999999999999999998


Q ss_pred             hccccccccccceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccC
Q 009379          153 AKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESG  231 (536)
Q Consensus       153 kqkk~~~r~~k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~k  231 (536)
                      +|+.+     .+|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|.|+|. +|++|.++|+++|.+|..
T Consensus        90 kq~~~-----~~KEirl~~~I~~hDl~~K~k~~~kFL~~G~kVkv~i~frGRE~~~~e~g~~ll~r~~~~l~~~a~ve~~  164 (182)
T CHL00199         90 KQHNS-----SIKEVKMRYKIEEHDYKVRINQAFKFLQAGDKVKATLTFRGREIQHLNLAINLLNKMAADLSSIAEIQQP  164 (182)
T ss_pred             ccCCc-----cceEEEecCCCCccHHHHHHHHHHHHHHCCCEEEEEEEEchhHHhhHHHHHHHHHHHHHHhhhhheeecC
Confidence            87655     799999999999999999999999999999999999999999999999997 999999999999999999


Q ss_pred             cccCCceEEEEEecC
Q 009379          232 PHVERKQAYAIIRHV  246 (536)
Q Consensus       232 Pk~EGK~m~miL~P~  246 (536)
                      |+++|++|.|+|.|.
T Consensus       165 pk~eGr~m~~~l~P~  179 (182)
T CHL00199        165 PSQDGRNMIMILSPK  179 (182)
T ss_pred             ccccCCEEEEEEecC
Confidence            999999999999554

>TIGR00168 infC translation initiation factor IF-3

Probab=100.00  E-value=1.2e-50  Score=378.87  Aligned_cols=159  Identities=35%  Similarity=0.547  Sum_probs=152.9

Q ss_pred             CCCCCCCceEEEEeCCCC--ccccHHHHHHHHHhcCCcEEEecCCCCCCeEEEecchhHHHHHHHHHHHHHhhccccccc
Q 009379           83 LNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSDITLK  160 (536)
Q Consensus        83 iNEeI~a~~VRLIdedG~--GVms~~EAL~lAk~~~LDLVeVsp~a~PPVCKImDYgK~kYEqqKKeKEaKKkqkk~~~r  160 (536)
                      +|++|++++|||||+||+  |+|++.|||++|++.+||||+|+++++|||||||||+||+||++||+|+++|+++.+   
T Consensus         1 iNe~I~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLVev~~~a~PPVckImdy~k~~ye~~KK~ke~kkkq~~~---   77 (165)
T TIGR00168         1 INERIRFNEVRLIDENGEQLGIVSREEALEIAEEAGLDLVLISPNAKPPVCKIMDYGKYKYEQEKKKKEAKKNQKII---   77 (165)
T ss_pred             CCcCcCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCcEEEECCCCCCCEEEEeeHHHHHHHHHHHHHHHHhcCCCC---
Confidence            699999999999999996  999999999999999999999999999999999999999999999999998877654   


Q ss_pred             cccceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCc-ccCCce
Q 009379          161 KGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP-HVERKQ  238 (536)
Q Consensus       161 ~~k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kP-k~EGK~  238 (536)
                        .+|||+|+|+|++|||++|++||++||++||+|+|+|+||||++++.|+|. +|++|.+.|+|+|.++..| +++|++
T Consensus        78 --~~KEi~~~~~I~~hDl~~K~k~~~~FL~kG~kVkv~l~frgRe~~~~e~g~~ll~~i~~~l~~~~~~e~~p~~~eG~~  155 (165)
T TIGR00168        78 --QVKEVKMRPTIDEHDLQFKLKQAIRFLEKGDKVKFTVRFRGRESTHIELGEKVLDRFYTDVADVAEVEKPPTKSEGRM  155 (165)
T ss_pred             --cceeEEEcCCCChhhHHHHHHHHHHHHHCCCeEEEEEEEcCCcccCHHHHHHHHHHHHHHhhhhhheecCcccccCCE
Confidence              799999999999999999999999999999999999999999999999997 9999999999999999999 999999


Q ss_pred             EEEEEecC
Q 009379          239 AYAIIRHV  246 (536)
Q Consensus       239 m~miL~P~  246 (536)
                      |+|+|.|.
T Consensus       156 ~~~~l~P~  163 (165)
T TIGR00168       156 MSMLLAPK  163 (165)
T ss_pred             EEEEEEeC
Confidence            99999664

render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression

>PRK00028 infC translation initiation factor IF-3; Reviewed

Probab=100.00  E-value=1.6e-50  Score=381.44  Aligned_cols=163  Identities=38%  Similarity=0.618  Sum_probs=156.3

Q ss_pred             CCCCCCCCCCCceEEEEeCCCC--ccccHHHHHHHHHhcCCcEEEecCCCCCCeEEEecchhHHHHHHHHHHHHHhhccc
Q 009379           79 SGPRLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAKAKSD  156 (536)
Q Consensus        79 d~~riNEeI~a~~VRLIdedG~--GVms~~EAL~lAk~~~LDLVeVsp~a~PPVCKImDYgK~kYEqqKKeKEaKKkqkk  156 (536)
                      +++++||+|++++|||||+||+  |+|++.|||++|++.+||||+|+++++|||||||||+||+||++||+++++|+++.
T Consensus         9 ~~~~iNe~I~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~lDLV~v~~~~~PPVckI~dy~k~~ye~~kK~ke~kkkq~~   88 (177)
T PRK00028          9 KEPRINEQIRAREVRLIGDDGEQLGIVSTREALELAEEAGLDLVEISPNAKPPVCKIMDYGKFKYEQKKKQKEAKKKQKV   88 (177)
T ss_pred             ccCCcCcCcCCCEEEEECCCCcCCCceeHHHHHHHHHHcCCCEEEECCCCCCCEEEEEeHHHHHHHHHHHHHHhhhccCc
Confidence            5699999999999999999996  99999999999999999999999999999999999999999999999999887765


Q ss_pred             cccccccceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCcccC
Q 009379          157 ITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVE  235 (536)
Q Consensus       157 ~~~r~~k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kPk~E  235 (536)
                      +     .+|||+|+|+|++|||++|+++|++||++||+|+|+|+||||++++.|+|. +|++|.+.|+|+|.++.+|+++
T Consensus        89 ~-----~~KEirl~~~I~~hDl~~K~k~~~kFL~kG~kVkv~l~frgre~~~~e~g~~vl~~v~~~l~~~~~~e~~p~~~  163 (177)
T PRK00028         89 I-----EVKEIKFRPKIDEHDYETKLKHARRFLEKGDKVKVTLRFRGREIAHKELGMELLERVAEDLEDIAKVEQEPKME  163 (177)
T ss_pred             c-----ceeEEEEccCCChhHHHHHHHHHHHHHHCCCEEEEEEEEcCCcccCHHHHHHHHHHHHHHcchhhheecccccc
Confidence            4     799999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             CceEEEEEecC
Q 009379          236 RKQAYAIIRHV  246 (536)
Q Consensus       236 GK~m~miL~P~  246 (536)
                      |++|+|+|.|.
T Consensus       164 G~~~~~~l~P~  174 (177)
T PRK00028        164 GRQMIMVLAPK  174 (177)
T ss_pred             CCEEEEEEEeC
Confidence            99999999553

>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria

Probab=99.91  E-value=9.2e-25  Score=182.06  Aligned_cols=72  Identities=49%  Similarity=0.756  Sum_probs=58.6

Q ss_pred             CCCCCCCCCCCceEEEEeCCCC--ccccHHHHHHHHHhcCCcEEEecCCCCCCeEEEecchhHHHHHHHHHHHH
Q 009379           79 SGPRLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDR  150 (536)
Q Consensus        79 d~~riNEeI~a~~VRLIdedG~--GVms~~EAL~lAk~~~LDLVeVsp~a~PPVCKImDYgK~kYEqqKKeKEa  150 (536)
                      +++++|++|++++|||||++|+  |+|+++|||++|++.+||||+|+++++|||||||||+||+||++||+||+
T Consensus         2 ~~~~iNe~I~~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~dy~k~~ye~~kk~ke~   75 (76)
T PF05198_consen    2 DKPRINEEIRAPEVRLIDEDGEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMDYGKYKYEQKKKAKEA   75 (76)
T ss_dssp             ----BGGG---SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-HHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCcCCCEEEEECCCCcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEechHHHHHHHHHHHHhc
Confidence            4689999999999999999996  99999999999999999999999999999999999999999999998875

IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.

>PF00707 IF3_C: Translation initiation factor IF-3, C-terminal domain; InterPro: IPR019815 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria

Probab=99.90  E-value=7.5e-24  Score=179.15  Aligned_cols=85  Identities=34%  Similarity=0.554  Sum_probs=78.2

Q ss_pred             cceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCcccCCceEEE
Q 009379          163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYA  241 (536)
Q Consensus       163 k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kPk~EGK~m~m  241 (536)
                      .+|||+|+|+|++|||++|+++|++||++||+|+|+|.||||++.+.|.+. +|++|.+.|+++|.++..|+++|++|+|
T Consensus         3 ~~KEi~~~~~I~~hDl~~K~k~~~~fL~kG~~Vkv~i~~rgr~~~~~e~~~~~l~~i~~~l~~~~~~~~~~~~~g~~~~~   82 (88)
T PF00707_consen    3 KVKEIRFSPNIDEHDLETKLKQAKKFLEKGHKVKVVIRFRGREMAHPELGEEVLERIIEELKDVGKVEKKPKMEGKQMSM   82 (88)
T ss_dssp             EEEEEEEETT--HHHHHHHHHHHHHHHHTTEEEEEEEE-SSTTTTHHHHHHHHHHHHHHHCTTTEEEEEEEEECCCCEEE
T ss_pred             eEEEEEEecCcChhHHHHHHHHHHHHHHCCCEEEEEEEecCccccchHHHHHHHHHHHHHHhhhcEEeecccccCCEEEE
Confidence            689999999999999999999999999999999999999999999999887 9999999999999999999999999999


Q ss_pred             EEecCC
Q 009379          242 IIRHVK  247 (536)
Q Consensus       242 iL~P~k  247 (536)
                      +|.|.|
T Consensus        83 ~l~P~k   88 (88)
T PF00707_consen   83 ILSPKK   88 (88)
T ss_dssp             EEEES-
T ss_pred             EEEeCC
Confidence            997764

IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2IFE_A 1TIG_A 2CRQ_A.

>PF14877 mIF3: Mitochondrial translation initiation factor

Probab=98.14  E-value=2.2e-05  Score=76.01  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=81.6

Q ss_pred             CceEEEEeCCC--CccccHHHHHHHH--HhcCCcEEEecCCC---CCCeEEEecchh----HH-HHHHHHHHHH------
Q 009379           89 AQFVRLVLDEG--HKVVSRHEALALA--RSLQCDLVEVDRKA---NPPVCKIMDFHK----EK-YQKELKEKDR------  150 (536)
Q Consensus        89 a~~VRLIdedG--~GVms~~EAL~lA--k~~~LDLVeVsp~a---~PPVCKImDYgK----~k-YEqqKKeKEa------  150 (536)
                      ...|.+|++..  .+.+++.+.++-.  +.+||-||-+....   +-|++||++-..    |- |-.+.|++|.      
T Consensus        32 ~g~Vk~inp~t~~Le~~~l~~~~~~lDL~~~Gl~iV~~~~~~~~~~lPLVK~v~~~~alk~YSd~LAk~Ke~ELl~~G~~  111 (181)
T PF14877_consen   32 NGKVKFINPETNKLEESNLRDIAKGLDLSKHGLQIVNSEKDQKGRDLPLVKIVEVREALKQYSDELAKQKEKELLEMGKA  111 (181)
T ss_pred             CCeEEEEcCCCCcceeeeHHHHHHhCCccccceEEecccccCCCCcCceEEEecHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            46899997655  4899999998877  47888888887665   669999998421    11 1122233322      


Q ss_pred             -Hhh--ccccccccccceeEEEeecCCcchHHH-HHHHHHHHHhcCCeEEEEEEecCC
Q 009379          151 -AKA--KSDITLKKGDCKEVRFSGKIEQKDLQM-KADTVKRLMDKGYRVKCMALPVGK  204 (536)
Q Consensus       151 -KKk--qkk~~~r~~k~KEIrLs~~IdeHDL~~-KlKQakkFLeKG~KVKVtI~fRGR  204 (536)
                       ++.  +.....+...+|.|+|+|.|..+||.. |..-+..-|+||++|-|.|--+++
T Consensus       112 ~k~~~~k~~~ekkks~~K~i~isW~Is~~DL~~QK~~EI~~~LkKG~kv~iyi~dK~~  169 (181)
T PF14877_consen  112 LKKLDKKLKAEKKKSSTKQIKISWQISPDDLKNQKANEIEKRLKKGEKVNIYIDDKDN  169 (181)
T ss_pred             HHHhhhhchhhhcccccceEEEEEeechHHHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence             110  001111234789999999999999964 888899999999999998865544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	536
1tif_A	78	Translation Initiation Factor 3 N-terminal Domain L		1e-06
1i96_V	89	Crystal Structure Of The 30s Ribosomal Subunit From		6e-04
1tig_A	94	Translation Initiation Factor 3 C-Terminal Domain L		8e-04

>pdb|1TIF|A Chain A, Translation Initiation Factor 3 N-terminal Domain Length = 78

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 83  LNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEK 140
           +N++I A+ VRL+   G +  + S+ EAL +A     DLV V   A PPVC+IMD+ K +
Sbjct: 7   INEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFR 66
Query: 141 YQKELKEKDRAK 152
           ++++ KEK+  K
Sbjct: 67  FEQQKKEKEARK 78

>pdb|1I96|V Chain V, Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With The Translation Initiation Factor If3 (C-Terminal Domain) Length = 89

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDL 221
           + K ++F  KI++ D Q K   +KR + +G++VK   +  G++    +LG   L+R+ + 
Sbjct: 1   EVKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTED 60
Query: 222 IEDISVVESGPHVERKQAYAIIRHVK 247
           ++D++VVE  P +  +    ++  VK
Sbjct: 61  LKDLAVVEMKPEMLGRDMNMLLAPVK 86

>pdb|1TIG|A Chain A, Translation Initiation Factor 3 C-Terminal Domain Length = 94

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDL 221
           + KEVR S  IE+ D   K    ++ ++KG +VK      G+    +++G   L RL + 
Sbjct: 6   NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEA 65
Query: 222 IEDISVVESGPHVERKQAYAII 243
             DI+VVE+ P ++ +  + ++
Sbjct: 66  CADIAVVETAPKMDGRNMFLVL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	536
1tif_A	78	IF3-N, translation initiation factor 3; IF3 N-term	2e-21
2crq_A	112	Mitochondrial translational initiation factor 3; r	6e-09
1i96_V	89	Translation initiation factor IF3; 30S ribosome; H	1e-06
1tig_A	94	IF3-C, translation initiation factor 3; IF3 C-term	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2ife_A	100	Protein (translation initiation factor IF3); gene	3e-05

>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1 Length = 78

 Score = 87.2 bits (217), Expect = 2e-21
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)

Query: 78  TSGPRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMD 135
           +    +N++I A+ VRL+   G +  + S+ EAL +A     DLV V   A PPVC+IMD
Sbjct: 2   SKDFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMD 61

Query: 136 FHKEKYQKELKEKDRAK 152
           + K +++++ KEK+  K
Sbjct: 62  YGKFRFEQQKKEKEARK 78

>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus} Length = 112

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 150 RAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETE 209
            +  K+  T      KE+ FS  I Q DL  K+  +++ ++K Y V+         E++E
Sbjct: 5   SSGPKTGPT----MTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIKRRKDAEQSE 60

Query: 210 DLG-GYLSRLIDLIEDISVVESGPHV--ERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTS 266
           +      ++++  + DI+   S P        +  + RH+          KK +  G +S
Sbjct: 61  EETEEIFNQILQTMPDIATFSSRPKAIRGGTASMCVFRHLS---------KKEEKSGPSS 111

Query: 267 G 267
           G
Sbjct: 112 G 112

>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1 Length = 89

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 22/98 (22%)

Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC--------MALPVGKKEETEDLG-GYL 215
           K ++F  KI++ D Q K   +KR + +G++VK         +A P        +LG   L
Sbjct: 3   KSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHP--------ELGERIL 54

Query: 216 SRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKK 253
           +R+ + ++D++VVE  P +  +    ++      P K 
Sbjct: 55  NRVTEDLKDLAVVEMKPEMLGRDMNMLL-----APVKV 87

>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1 Length = 94

 Score = 45.6 bits (109), Expect = 1e-06
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGY-LSRLIDLIE 223
           KEVR S  IE+ D   K    ++ ++KG +VK      G+    +++G   L RL +   
Sbjct: 8   KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACA 67

Query: 224 DISVVESGPHVERKQAYAIIRHVKFGPSKK 253
           DI+VVE+ P ++ +  + ++      P   
Sbjct: 68  DIAVVETAPKMDGRNMFLVL-----APKND 92

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 56/368 (15%), Positives = 112/368 (30%), Gaps = 81/368 (22%)

Query: 4   SCRTNQSRLKH---LTHQFKRYYIQVPSLNHSISHTK--ICEAKKPFWESAVKTPN---- 54
           +C + ++ L+    L +Q    +      + +I      I    +   +S     N    
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLV 249

Query: 55  --DFCNN--VRFFAAPVQAQ---QKKDEKETSGPRLNDKINAQFV-RLVLDEGHKVVSRH 106
             +  N      F   +  +     + ++ T      D ++A     + LD     ++  
Sbjct: 250 LLNVQNAKAWNAFN--LSCKILLTTRFKQVT------DFLSAATTTHISLDHHSMTLTPD 301

Query: 107 EALAL-ARSLQC---DLVEVDRKANPPVCKIM-----DFHK--EKYQKELKEKDRAKAKS 155
           E  +L  + L C   DL       NP    I+     D     + ++    +K     +S
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 156 DI-TLKKGDCKE--VRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLG 212
            +  L+  + ++   R S  +      +    +  +                K +   + 
Sbjct: 362 SLNVLEPAEYRKMFDRLS--VFPPSAHIPTILLSLIWFDV-----------IKSDVMVV- 407

Query: 213 GYLSRLIDLIEDISVVESGPHVERKQAYAIIRHVKFGPSKKGGLKKLKAVGDTSGVSKAA 272
                 ++ +   S+VE  P        +I   +K     +  L +   V D   + K  
Sbjct: 408 ------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIV-DHYNIPKTF 459

Query: 273 TPSSTIERSVD------IP---TPAIHEEDPAEFG--------LE-KIEKKNTPWSVSNS 314
                I   +D      I        H E    F         LE KI   +T W+ S S
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 315 -NDDLNEV 321
             + L ++
Sbjct: 520 ILNTLQQL 527

>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1 Length = 100

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 17/77 (22%)

Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKC--------MALPVGKKEETEDLGGY-L 215
           KE++F    ++ D Q+K  ++ R +++G + K         MA           +G   L
Sbjct: 14  KEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQ--------QIGMEVL 65

Query: 216 SRLIDLIEDISVVESGP 232
           +R+ D +++++VVES P
Sbjct: 66  NRVKDDLQELAVVESFP 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	536
2ife_A	100	Protein (translation initiation factor IF3); gene	99.95
1i96_V	89	Translation initiation factor IF3; 30S ribosome; H	99.94
1tig_A	94	IF3-C, translation initiation factor 3; IF3 C-term	99.94
1tif_A	78	IF3-N, translation initiation factor 3; IF3 N-term	99.94
2crq_A	112	Mitochondrial translational initiation factor 3; r	99.94

>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1

Probab=99.95  E-value=9.3e-29  Score=214.45  Aligned_cols=94  Identities=24%  Similarity=0.397  Sum_probs=82.5

Q ss_pred             HHHHhhccccccccccceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhcc
Q 009379          148 KDRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDIS  226 (536)
Q Consensus       148 KEaKKkqkk~~~r~~k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg  226 (536)
                      +|++|+|+.+     .+|||+|+|+|++|||++|+++|++||++|++|+|+|+|||||++|.|+|. ||++|.++|+|+|
T Consensus         2 keakkkqk~~-----~vKEikl~p~Id~HD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~   76 (100)
T 2ife_A            2 EFQKKKQKVI-----QVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELA   76 (100)
T ss_dssp             --------CC-----EEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTE
T ss_pred             chhhcccCCc-----eeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhhe
Confidence            5677777665     789999999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             ccccCc-ccCCceEEEEEecC
Q 009379          227 VVESGP-HVERKQAYAIIRHV  246 (536)
Q Consensus       227 ~VE~kP-k~EGK~m~miL~P~  246 (536)
                      .+|..| +++|++|+|+|.|.
T Consensus        77 ~ve~~p~k~eGr~m~m~l~Pk   97 (100)
T 2ife_A           77 VVESFPTKIEGRQMIMVLAPK   97 (100)
T ss_dssp             EESCCCCCCCSSCCEEEEEEC
T ss_pred             EEecCcccccCceEEEEEEeC
Confidence            999999 99999999999553

>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1

Probab=99.94  E-value=1.3e-27  Score=203.51  Aligned_cols=82  Identities=27%  Similarity=0.492  Sum_probs=79.8

Q ss_pred             ceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCcccCCceEEEE
Q 009379          164 CKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAI  242 (536)
Q Consensus       164 ~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kPk~EGK~m~mi  242 (536)
                      +|||+|+|+|++|||++|+++|++||++|+||||+|+|||||++|+|+|. +|++|.++|+|+|.+|+.|+++|++|+|+
T Consensus         2 vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m~   81 (89)
T 1i96_V            2 VKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNML   81 (89)
T ss_pred             ceEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEEE
Confidence            69999999999999999999999999999999999999999999999998 99999999999999999999999999999


Q ss_pred             Eec
Q 009379          243 IRH  245 (536)
Q Consensus       243 L~P  245 (536)
                      |.|
T Consensus        82 l~P   84 (89)
T 1i96_V           82 LAP   84 (89)
T ss_pred             EEe
Confidence            944

>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1

Probab=99.94  E-value=1e-27  Score=205.74  Aligned_cols=84  Identities=29%  Similarity=0.521  Sum_probs=81.3

Q ss_pred             cceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCcccCCceEEE
Q 009379          163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYA  241 (536)
Q Consensus       163 k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kPk~EGK~m~m  241 (536)
                      .+|||+|+|+|++|||++|+++|++||++|++|+|+|+|||||++|.|+|. +|++|.++|+|+|.+|..|++||++|+|
T Consensus         6 ~vKEikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~m   85 (94)
T 1tig_A            6 NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFL   85 (94)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEETTEEEE
T ss_pred             eeEEEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHHHHHhhhhhEEecCccccCCEEEE
Confidence            789999999999999999999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             EEecC
Q 009379          242 IIRHV  246 (536)
Q Consensus       242 iL~P~  246 (536)
                      +|.|.
T Consensus        86 ~l~Pk   90 (94)
T 1tig_A           86 VLAPK   90 (94)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            99553

>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1

Probab=99.94  E-value=3.3e-27  Score=196.87  Aligned_cols=73  Identities=40%  Similarity=0.623  Sum_probs=69.9

Q ss_pred             CCCCCCCCCCceEEEEeCCCC--ccccHHHHHHHHHhcCCcEEEecCCCCCCeEEEecchhHHHHHHHHHHHHHh
Q 009379           80 GPRLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAK  152 (536)
Q Consensus        80 ~~riNEeI~a~~VRLIdedG~--GVms~~EAL~lAk~~~LDLVeVsp~a~PPVCKImDYgK~kYEqqKKeKEaKK  152 (536)
                      .+++|++|++++|||||+||+  |+|+++|||++|++.+||||+|+++++||||||||||||+||++||+||+||
T Consensus         4 ~~~iNe~Ir~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~LDLVevsp~a~PPVCkImDygK~~ye~~Kk~keakk   78 (78)
T 1tif_A            4 DFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK   78 (78)
T ss_dssp             CCCBGGGCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHHHHHHHHHHHHHHTTC
T ss_pred             ccccCcccCCCEEEEECCCCcCCCcccHHHHHHHHHHcCCCEEEECCCCCCCEEEEecchhHHHHHHHHHHHhcC
Confidence            489999999999999999996  9999999999999999999999999999999999999999999999998753

>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.94  E-value=2.7e-27  Score=208.84  Aligned_cols=95  Identities=21%  Similarity=0.327  Sum_probs=86.8

Q ss_pred             HHHhhccccccccccceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCccc-chHHHH-HHHHHHHHhhhcc
Q 009379          149 DRAKAKSDITLKKGDCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEE-TEDLGG-YLSRLIDLIEDIS  226 (536)
Q Consensus       149 EaKKkqkk~~~r~~k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~-~qElge-lL~RV~e~LeEVg  226 (536)
                      |++|+|+.+     .+|||+|+|+|++|||++|+++|++||++||||+|+|+ ||||++ |+|+|. ||++|.++|+|+|
T Consensus         5 eakkkqk~~-----~vKEIrl~p~Id~HDl~~K~k~a~kFLe~GdKVKvti~-RGRE~~~~~e~g~~lL~r~~~~l~dv~   78 (112)
T 2crq_A            5 SSGPKTGPT-----MTKELVFSSNIGQHDLDTKSKQIQQWIEKKYHVQVTIK-RRKDAEQSEEETEEIFNQILQTMPDIA   78 (112)
T ss_dssp             CCCCCCCCS-----CEEEEEEETTCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CCTTCSCCHHHHHHHHHHHHTTSTTTC
T ss_pred             hhhcccCCc-----eeEEEEecCCcccchHHHHHHHHHHHHHCCCEEEEEEE-CCccccccHHHHHHHHHHHHHHhhhhh
Confidence            456666554     79999999999999999999999999999999999999 999999 999998 9999999999999


Q ss_pred             ccccCcc--cCCceEEEEEecCCCCCCCCC
Q 009379          227 VVESGPH--VERKQAYAIIRHVKFGPSKKG  254 (536)
Q Consensus       227 ~VE~kPk--~EGK~m~miL~P~k~~P~kK~  254 (536)
                      .+|..|+  ++|++|+|+|     +|++|+
T Consensus        79 ~vE~~Pk~~~eGr~m~mvL-----~Pkkkk  103 (112)
T 2crq_A           79 TFSSRPKAIRGGTASMCVF-----RHLSKK  103 (112)
T ss_dssp             EEEEEEEEEGGGTEEEEEE-----ECCSSS
T ss_pred             EEeccccccCCCCEEEEEE-----EeCCcc
Confidence            9999999  8999999999     555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	536
d1tifa_	76	d.15.8.1 (A:) Translation initiation factor IF3, N	1e-20
d1tiga_	88	d.68.1.1 (A:) Translation initiation factor IF3, C	5e-13
d2ifea_	91	d.68.1.1 (A:) Translation initiation factor IF3, C	5e-10

>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Translation initiation factor IF3, N-terminal domain
family: Translation initiation factor IF3, N-terminal domain
domain: Translation initiation factor IF3, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 84.0 bits (208), Expect = 1e-20
 Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 81  PRLNDKINAQFVRLVLDEGHK--VVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHK 138
             +N++I A+ VRL+   G +  + S+ EAL +A     DLV V   A PPVC+IMD+ K
Sbjct: 3   FIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGK 62

Query: 139 EKYQKELKEKDRAK 152
            +++++ KEK+  K
Sbjct: 63  FRFEQQKKEKEARK 76

>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 88

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGY-LSRLIDLIE 223
           KEVR S  IE+ D   K    ++ ++KG +VK      G+    +++G   L RL +   
Sbjct: 4   KEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACA 63

Query: 224 DISVVESGPHVERKQAYAII 243
           DI+VVE+ P ++ +  + ++
Sbjct: 64  DIAVVETAPKMDGRNMFLVL 83

>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 165 KEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGGY-LSRLIDLIE 223
           KE++F    ++ D Q+K  ++ R +++G + K      G++   + +G   L+R+ D ++
Sbjct: 5   KEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQ 64

Query: 224 DISVVESGPH-VERKQAYAIIRHVKFGPSKK 253
           +++VVES P  +E +Q   ++      P KK
Sbjct: 65  ELAVVESFPTKIEGRQMIMVL-----APKKK 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	536
d1i96v_	86	Translation initiation factor IF3, C-terminal doma	99.93
d1tifa_	76	Translation initiation factor IF3, N-terminal doma	99.92
d1tiga_	88	Translation initiation factor IF3, C-terminal doma	99.92
d2ifea_	91	Translation initiation factor IF3, C-terminal doma	99.92

>d1i96v_ d.68.1.1 (V:) Translation initiation factor IF3, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.9e-26  Score=192.60  Aligned_cols=84  Identities=29%  Similarity=0.506  Sum_probs=81.5

Q ss_pred             ceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCcccCCceEEEE
Q 009379          164 CKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYAI  242 (536)
Q Consensus       164 ~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kPk~EGK~m~mi  242 (536)
                      +|||+|+|+|++|||++|++||++||++||+|+|+|+|||||++|.|+|. +|++|.+.|+|+|.+|+.|+++|++|+|+
T Consensus         2 vKEIrl~~~I~~hDl~~K~k~a~~FL~~G~kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~d~~~ve~~pk~~Gr~~~~~   81 (86)
T d1i96v_           2 VKSIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRVTEDLKDLAVVEMKPEMLGRDMNML   81 (86)
T ss_pred             cceEEeecCCCcchHHHHHHHHHHHHhcCCeEEEEEEEecccccCHHHHHHHHHHHHHHhhhheEEecCccccCCEEEEE
Confidence            79999999999999999999999999999999999999999999999997 99999999999999999999999999999


Q ss_pred             EecCC
Q 009379          243 IRHVK  247 (536)
Q Consensus       243 L~P~k  247 (536)
                      |.|.|
T Consensus        82 l~P~K   86 (86)
T d1i96v_          82 LAPVK   86 (86)
T ss_pred             EeeCC
Confidence            97765

>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Translation initiation factor IF3, N-terminal domain
family: Translation initiation factor IF3, N-terminal domain
domain: Translation initiation factor IF3, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=2.9e-26  Score=188.37  Aligned_cols=73  Identities=40%  Similarity=0.623  Sum_probs=69.5

Q ss_pred             CCCCCCCCCCceEEEEeCCCC--ccccHHHHHHHHHhcCCcEEEecCCCCCCeEEEecchhHHHHHHHHHHHHHh
Q 009379           80 GPRLNDKINAQFVRLVLDEGH--KVVSRHEALALARSLQCDLVEVDRKANPPVCKIMDFHKEKYQKELKEKDRAK  152 (536)
Q Consensus        80 ~~riNEeI~a~~VRLIdedG~--GVms~~EAL~lAk~~~LDLVeVsp~a~PPVCKImDYgK~kYEqqKKeKEaKK  152 (536)
                      .+++|++|++++|||||++|+  |+|+++|||++|++.+||||+|+++++||||||||||||+||++|++++++|
T Consensus         2 ~~~iNe~I~a~~VrlI~~~G~~lGv~~~~eAl~~A~~~glDLV~vs~~a~PPVcKi~dygK~~ye~~kk~ke~kK   76 (76)
T d1tifa_           2 DFIINEQIRAREVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYGKFRFEQQKKEKEARK   76 (76)
T ss_dssp             CCCBGGGCCCSEEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHHHHHHHHHHHHHHTTC
T ss_pred             CccccCCccCCEEEEECCCCcEeCeecHHHHHHHHHHcCCCEEEecCCCCCCEEEEEcchhHHHHHHHHHHHhcC
Confidence            378999999999999999996  9999999999999999999999999999999999999999999999988753

>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=6.8e-26  Score=190.12  Aligned_cols=85  Identities=28%  Similarity=0.518  Sum_probs=81.9

Q ss_pred             cceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCcccCCceEEE
Q 009379          163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGPHVERKQAYA  241 (536)
Q Consensus       163 k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kPk~EGK~m~m  241 (536)
                      .+|||+|+|+|++|||++|++||++||++||+|+|+|+|||||+++.|+|. +|++|.+.|+|+|.+|..|+++|++|+|
T Consensus         2 ~lKEIr~~~~I~~hDl~~K~k~a~~FL~~G~kVKv~v~frGRe~~~~e~g~~~l~~~~~~l~~~~~ve~~pk~eGr~~~~   81 (88)
T d1tiga_           2 NVKEVRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGRAITHKEIGQRVLDRLSEACADIAVVETAPKMDGRNMFL   81 (88)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSCCTTHHHHHHHHHHHHHHHTTTTEEEEEEEEEETTEEEE
T ss_pred             ceeEEEEecCCCcchHHHHHHHHHHHHhcCCeEEEEEEEcCccccCHHHHHHHHHHHHHHhhhheeeccCccccCCEEEE
Confidence            589999999999999999999999999999999999999999999999997 9999999999999999999999999999


Q ss_pred             EEecCC
Q 009379          242 IIRHVK  247 (536)
Q Consensus       242 iL~P~k  247 (536)
                      +|+|-+
T Consensus        82 ~l~Pkk   87 (88)
T d1tiga_          82 VLAPKN   87 (88)
T ss_dssp             EEEESC
T ss_pred             EEecCC
Confidence            996644

>d2ifea_ d.68.1.1 (A:) Translation initiation factor IF3, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: Translation initiation factor IF3, C-terminal domain
family: Translation initiation factor IF3, C-terminal domain
domain: Translation initiation factor IF3, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=7.8e-26  Score=190.87  Aligned_cols=83  Identities=25%  Similarity=0.443  Sum_probs=79.7

Q ss_pred             cceeEEEeecCCcchHHHHHHHHHHHHhcCCeEEEEEEecCCcccchHHHH-HHHHHHHHhhhccccccCc-ccCCceEE
Q 009379          163 DCKEVRFSGKIEQKDLQMKADTVKRLMDKGYRVKCMALPVGKKEETEDLGG-YLSRLIDLIEDISVVESGP-HVERKQAY  240 (536)
Q Consensus       163 k~KEIrLs~~IdeHDL~~KlKQakkFLeKG~KVKVtI~fRGRE~~~qElge-lL~RV~e~LeEVg~VE~kP-k~EGK~m~  240 (536)
                      .+|||+|+++|++|||++|++||++||++||+|+|+|+|||||++|.|+|. +|++|.+.|+|+|.+|+.| +++|++|+
T Consensus         3 ~vKEirl~~~I~~hDl~~Klk~a~~FL~~G~kVKv~i~frGRE~~~~e~g~~~l~~i~~~l~~v~~ve~~p~k~~Gr~~~   82 (91)
T d2ifea_           3 QVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMI   82 (91)
T ss_dssp             EEEEEEECTTCCHHHHTHHHHHHHHHHHTTEEEEEEECCSSCTTCCSSHHHHHHHHHHHHHTTTEEESCCCCCCCSSCCE
T ss_pred             EEEEEEEecCCCcchHHHHHHHHHHHHHCCCeEEEEEEEcCCcccCHHHHHHHHHHHHHHhhhheEEeccCccccCCeEE
Confidence            689999999999999999999999999999999999999999999999998 9999999999999999887 78999999


Q ss_pred             EEEec
Q 009379          241 AIIRH  245 (536)
Q Consensus       241 miL~P  245 (536)
                      |+|.|
T Consensus        83 ~~l~P   87 (91)
T d2ifea_          83 MVLAP   87 (91)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99944