Citrus Sinensis ID: 009380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
Protein Sequence
MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccEEEEcccccccEEEcccccccccEEccccccccccccccEEEEEccccccccEEEEEccccccEEEcccccccEEEcccccEEEEEccccccEEEEEEEcccEEEEEEEcccEEEccccccccccEEEEEcccEEEEEEcccccccEEEEEcccccEEEEEcccccccccccEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEccccEEEEEEccccccEEEEEEccccEEEEEccccccEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccccccccccEEccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEEcccccccEEEEEcccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccEEEEcEcccccccccccccEEccccccccccccccccccEEEEccccccccccccccccEEEEEEccccccccccccccccccEEEEEEcccccEEEEcccccEEEEEEcccccEcccccccccccccEEEEccccccEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEccc
Coil and Loop (DISEMBL)
MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKaykvspqkkskpetpiVLRRSLrtqgmqpdskglsdhsvasdpktsksvspkkssamtgplsfknayveTGTFVSLVDVFLSvakkphfgeiKEEFNASldyemkpkvgvsvsvkedgvkackdenlgfvikdefngfktckdeglgvgscdlikgvvktekievgscvdigsltlkpeniarimpgritqmkflpcsdvRMVVAGsklgnitfwnldsqqdednGIYLFRthlgpisgivTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFslsqqpnnvntlyfgegqgglniwdvrSRKSATEWLLHEARintidfnprnpnimatsstdgtACIWdlrsmatdkpepmkvlshkravhsayfspsgsslattsfddtigiwsgvnfentsmihhnnqtgrWISSFRAiwgwddscvfiGNMTrtvevispaqrrsvatlqspyisaipcrfhahphqvgtlagatgggqvYVWTSD
Flexible Loop (DISEMBL)
MAPEKLTEYERKRLENIKRNEEMLAALKVhakasdlsaaskrQRVEikaykvspqkkskpetpivlrrslrtqgmqpdskglsdhsvasdpktsksvspkkssamtgpLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEfnasldyemkpKVGVSvsvkedgvkackdenlgfviKDEFNGfktckdeglgvgscDLIKGVVKtekievgscvdigsltlkpeniARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEarintidfnprnpNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGtlagatgggQVYVWTSD
Low Complexity Region (SEG)
MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPIVLRRSLRTQGMQPDSKGLSDHSVAsdpktsksvspkkssAMTGPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD
Disordered region (IsUnstruct)
*************************************************************************************************************SFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS*********************Y*******LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW***
Disordered Region (DISOPRED)
****KLTEYERKRLENIKRNEEMLA*************************************************************************************************SLVDVFLSVAKKPHFGEIKEEFNASLDY***********VKEDGVKACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD*P*****LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD
Disordered Region (DISEMBL)
MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAY************PIVLRRSLRT**********************************GPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD
Disordered Region (DISPRO)
*APEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQ**EIKAYKV*******PETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	536	2.2.26 [Sep-21-2011]
Q0UYV9	519	WD repeat-containing prot	N/A	no	0.852	0.880	0.264	2e-31
Q4KLQ5	580	WD repeat-containing prot	N/A	no	0.580	0.536	0.281	2e-30
Q4WLU1	527	WD repeat-containing prot	yes	no	0.873	0.888	0.236	1e-29
B0Y8S0	528	WD repeat-containing prot	N/A	no	0.869	0.882	0.236	2e-29
A7TL17	536	WD repeat-containing prot	N/A	no	0.888	0.888	0.233	1e-28
A3LWH8	514	WD repeat-containing prot	yes	no	0.876	0.914	0.247	2e-28
Q7S1H9	521	WD repeat-containing prot	N/A	no	0.880	0.905	0.278	2e-28
Q9H967	626	WD repeat-containing prot	yes	no	0.587	0.503	0.264	6e-28
A1DNV8	527	WD repeat-containing prot	N/A	no	0.873	0.888	0.243	8e-28
B2KIQ4	630	WD repeat-containing prot	N/A	no	0.578	0.492	0.274	1e-26

>sp|Q0UYV9|YD156_PHANO WD repeat-containing protein SNOG_03055 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_03055 PE=3 SV=1

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 154/583 (26%), Positives = 246/583 (42%), Gaps = 126/583 (21%)

Query: 5   KLTEYERKRLENIKRNEEMLAALKVHAKASDL-------SAASKRQRVEIKAYKVSPQKK 57
           +L+EYERKR ENI + + +L  L++ A  + L       +AAS + RV+    K +P KK
Sbjct: 8   ELSEYERKRQENIAKTQALLRNLEMEAAEAGLGPTGKSRAAASSKPRVK----KPAP-KK 62

Query: 58  SKPETPIVLRRSLRTQGMQPDS----KGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKN 113
            K E     R S R +G++ DS    +   D  VA      K     K   ++   +F +
Sbjct: 63  IKQEDIAPRRTSSRLKGIEADSEKAKRKAEDEYVAI-----KEADRAKRQRVSDAFNFSD 117

Query: 114 AYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDE 173
             V  G   +    FLS+            +  + D+              D VK   D+
Sbjct: 118 IVV-AGKDWNRSGNFLSIGPA-------NPYERTFDF--------------DDVKETTDK 155

Query: 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIM 233
            L   ++++ +G +  +D                                 +P  I +I 
Sbjct: 156 EL-RALREKMSGLQLWED--------------------------------FEPNEI-KIT 181

Query: 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNL---------DSQQDEDN---GIYLFRTH 281
           P RI  M   P ++  +V AG KLGN+   +          +  +D DN    I   + H
Sbjct: 182 PERIYAMGMHPTTEKPLVFAGDKLGNLGICDASQKVAEVKQEDDEDADNEGPTITTLKPH 241

Query: 282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-----SSEYAVFSLSQQPNN 336
              I       +  + ++++ YD  +R +D  K V   VY     + +  +  L    ++
Sbjct: 242 TRTIHTFQFSPHDSNALYSASYDSSVRKLDLAKGVAVEVYGPSDPNEDQPLSGLEISKDD 301

Query: 337 VNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIW 395
            NTLYF    G   I+D+R+     E   L E +I     +P+ P+++AT+S D T  IW
Sbjct: 302 ANTLYFSTLDGRFGIYDMRTPSDQAELFQLSEKKIGGFSLHPQQPHLVATASLDRTLKIW 361

Query: 396 DLRSMA--TDKPEPMKVLSHKRAV---HSAYFSPSGSSLATTSFDDTIGI--------W- 441
           DLR ++   D   P  V  H+  +   H+A+   S   +AT S+DDTI I        W 
Sbjct: 362 DLRKISGKGDSRLPALVGEHESRLSVSHAAW--NSAGQVATASYDDTIKIHDFSKSAEWA 419

Query: 442 SGVNFENTSM-----IHHNNQTGRWISSFRAIW------GWDDSCVFIGNMTRTVEVISP 490
           +G    +  M     + HNNQTGRW++  RA W      G    C  IGNM R V++ + 
Sbjct: 420 TGTALTDADMKPSVVVPHNNQTGRWVTILRAQWQQFPQDGVQRFC--IGNMNRFVDIYT- 476

Query: 491 AQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
           A+ + +A L    I+A+P     HP  +  +A  T  G++ +W
Sbjct: 477 AKGQQLAQLGGDGITAVPAVAKFHP-TLDWVAAGTASGKLCLW 518

Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614)

>sp|Q4KLQ5|WDR76_XENLA WD repeat-containing protein 76 OS=Xenopus laevis GN=wdr76 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 161/327 (49%), Gaps = 16/327 (4%)

Query: 219 IGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF 278
           + ++TL+ E +A+++  RI  +   P     +V AG K G I  W+L      D G+Y+F
Sbjct: 256 LQTMTLREETVAKVVQNRIFSVAIHPSESRTIVAAGDKWGQIGLWDLADLSGND-GVYVF 314

Query: 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-SLSQQPNNV 337
             H  PIS +       +++F+  YDG +R  D  + VFD VY  E   F S      + 
Sbjct: 315 EPHSRPISCMSFSPVNSAQLFSLSYDGTVRCGDVCRSVFDEVYRDEQDSFSSFDYLSADC 374

Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIW 395
           + L        L++ D R+  ++ E    L+     T   +P N ++   +   G  CI+
Sbjct: 375 SVLIVSHWDSYLSVVDCRTPGTSCEQRASLNMRSARTTSVHPVNRDLCVVAGA-GDVCIF 433

Query: 396 DLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMI-- 452
           D+R +       + +  H ++V SAYFSP +G+ + TT  DD I ++   +  + + +  
Sbjct: 434 DVRQLKKKAQPVLSLTGHSKSVASAYFSPVTGNRILTTCADDYIRVYDSSSLCSEAPLLT 493

Query: 453 --HHNNQTGRWISSFRAIWG-WDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPYISAI 507
              HNN TGRW++ FRA+W    +SC  +G+M   R +EV + + +   +   S ++ ++
Sbjct: 494 AFRHNNNTGRWLTRFRAVWDPKQESCFVVGSMARPRQIEVYNESGKLEHSFWDSEHLGSV 553

Query: 508 PCRFHA-HPHQVGTLAGATGGGQVYVW 533
            C  +A HP +   L G    G+++V+
Sbjct: 554 -CSINAMHPTR-NLLVGGNSSGRLHVF 578

Xenopus laevis (taxid: 8355)

>sp|Q4WLU1|YD156_ASPFU WD repeat-containing protein AFUA_6G12330 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_6G12330 PE=3 SV=1

 Score =  131 bits (330), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 139/588 (23%), Positives = 241/588 (40%), Gaps = 120/588 (20%)

Query: 2   APEKLTEYERKRLENIKRNEEMLAALKVHAKASDL-----SAASKRQRVEIKAYKVSPQK 56
           A  +L+E+E++RL NI   + +L  L + A++S L     + +S   + + K      + 
Sbjct: 3   ADNELSEFEKQRLANIAERDALLKKLSLDAQSSGLFPPKSARSSPGGQTKPKKKPPPKKV 62

Query: 57  KSKPETPIVLRRSLRTQGMQPDS---KGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKN 113
           K + E P+  R S R +G+  DS   K  +D    +  +  ++   +KS A +      +
Sbjct: 63  KKEDEHPVPRRMSSRLRGLAADSEVAKRKADEQYEAAQQAERAKRVRKSDAFSFSEMLVS 122

Query: 114 AYVETGTFVSLVDVFLSVAKKPH---FGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKAC 170
               +G  +  VDV       P+   FG+  E+   + D E+K                 
Sbjct: 123 GQKLSGDSLIGVDVVTKGVAMPYQRTFGD--EDIKKTTDKELK----------------- 163

Query: 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA 230
                   +++E +G +  +                                  +P  I 
Sbjct: 164 -------ALREEMSGLRLWE--------------------------------AWEPNRI- 183

Query: 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNG---------------- 274
           ++ P RI  M F P     ++ AG K+GN+    LD+ Q++                   
Sbjct: 184 KLTPERIYTMTFHPSEAKPLIFAGDKMGNLGV--LDASQEKPTSAVKQEDDEDAEDDDPD 241

Query: 275 --IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAV 327
             +   + H   IS +       + ++++ YD  IR +D EK      Y+ E       +
Sbjct: 242 PVLTTLKPHTRTISSLHIHPSKPTHLYSASYDSSIRELDLEKTTSVEKYAPESTSDDIPI 301

Query: 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVR-SRKSATE-WLLHEARINTIDFNPRNPNIMAT 385
             +   P++ NTLY+    G    +D R SR+SA   W L E +I      P +P+  AT
Sbjct: 302 SGIDMAPDDPNTLYWTTLDGAFGRYDTRASRRSAVATWQLSEKKIGGFSLFPTHPHFFAT 361

Query: 386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW---- 441
           +S D T  +WD+R ++ D P P+     + +V  A F+ +G  +AT+S+DDT+ I+    
Sbjct: 362 ASLDRTMRLWDIRKLSHDDPVPVGEHVSRLSVSHAAFNSAG-QIATSSYDDTLKIYDFGS 420

Query: 442 ------------SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVF----IGNMTRTV 485
                       S    +  +++ HN QTGRW++  R  W  +         IGNM R V
Sbjct: 421 KGIAAWEPGYTLSDAEMKPDTIVRHNCQTGRWVTILRPQWQANPQSSIQRFCIGNMNRFV 480

Query: 486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
           +V S +  + +A L    I+A+P     H      +AG T  G++ +W
Sbjct: 481 DVYSSSGDQ-LAQLGGDGITAVPAVAVFH-RSTNWIAGGTASGKICLW 526

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|B0Y8S0|YD156_ASPFC WD repeat-containing protein AFUB_078330 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_078330 PE=3 SV=1

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 140/591 (23%), Positives = 242/591 (40%), Gaps = 125/591 (21%)

Query: 2   APEKLTEYERKRLENIKRNEEMLAALKVHAKASDL-----SAASKRQRVEIKAYKVSPQK 56
           A  +L+E+E++RL NI   + +L  L + A++S L     + +S   + + K      + 
Sbjct: 3   ADNELSEFEKQRLANIAERDALLKKLSLDAQSSGLFPPKSARSSPGGQTKPKKKPPPKKV 62

Query: 57  KSKPETPIVLRRSLRTQGMQPDS---KGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKN 113
           K + E P+  R S R +G+  DS   K  +D    +  +  ++   +KS A +      +
Sbjct: 63  KKEDEHPVPRRMSSRLRGLAADSEVAKRKADEQYEAAQQAERAKRVRKSDAFSFSEMLVS 122

Query: 114 AYVETGTFVSLVDVFLSVAKKPH---FGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKAC 170
               +G  +  VDV       P+   FG+  E+   + D E+K                 
Sbjct: 123 GQKLSGDSLIGVDVVTKGVAMPYQRTFGD--EDIKKTTDKELK----------------- 163

Query: 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA 230
                   +++E +G +  +                                  +P  I 
Sbjct: 164 -------ALREEMSGLRLWE--------------------------------AWEPNRI- 183

Query: 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNG---------------- 274
           ++ P RI  M F P     ++ AG K+GN+    LD+ Q++                   
Sbjct: 184 KLTPERIYTMTFHPSEAKPLIFAGDKMGNLGV--LDASQEKPTSAVKQEDDEEDAEDDDP 241

Query: 275 ---IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YA 326
              +   + H   IS +       + ++++ YD  IR +D EK      Y+ E       
Sbjct: 242 DPVLTTLKPHTRTISSLHIHPSKPTHLYSASYDSSIRELDLEKTTSVEKYAPESTSDDIP 301

Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVR-SRKSATE-WLLHEARINTIDFNPRNPNIMA 384
           +  +   P++ NTLY+    G    +D R SR+SA   W L E +I      P +P+  A
Sbjct: 302 ISGIDMAPDDPNTLYWTTLDGAFGRYDTRASRRSAVATWQLSEKKIGGFSLFPTHPHFFA 361

Query: 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW--- 441
           T+S D T  +WD+R ++ D P P+     + +V  A F+ +G  +AT+S+DDT+ I+   
Sbjct: 362 TASLDRTMRLWDIRKLSHDDPVPVGEHVSRLSVSHAAFNSAG-QIATSSYDDTLKIYDFG 420

Query: 442 -------------SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVF----IGNMTRT 484
                        S    +  +++ HN QTGRW++  R  W  +         IGNM R 
Sbjct: 421 SKGIAAWEPGYTLSDAEMKPDTIVRHNCQTGRWVTILRPQWQANPQSSIQRFCIGNMNRF 480

Query: 485 VEVISPAQRRSVATLQSPYISAIP--CRFHAHPHQVGTLAGATGGGQVYVW 533
           V+V S +  + +A L    I+A+P    FH        +AG T  G++ +W
Sbjct: 481 VDVYSSSGDQ-LAQLGGDGITAVPAVAVFHC---STNWIAGGTASGKICLW 527

Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) (taxid: 451804)

>sp|A7TL17|YD156_VANPO WD repeat-containing protein Kpol_530p43 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_530p43 PE=3 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 136/582 (23%), Positives = 240/582 (41%), Gaps = 106/582 (18%)

Query: 5   KLTEYERKRLENIKRNEEMLAALKVHAKASDL---SAASKRQRVEIKAYK---VSPQKKS 58
           +LTE++++R ENIKRN ++L  L +   AS +   +      R  +K  K   VS  + +
Sbjct: 3   ELTEFQKRRQENIKRNNDLLKKLHLGGAASRIKREAGVDDTHRTVVKKKKSPSVSRGRSA 62

Query: 59  KPET-PIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVE 117
            P+  P+  RRS+R +G + D+ G+                P  S      +S       
Sbjct: 63  SPKVAPVATRRSMRLRGEKVDNVGI----------------PNVSDTQLMKMSLDGT--- 103

Query: 118 TGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGF 177
           +G+ V+  ++   +   P  G++K                       D +K  K+ENL  
Sbjct: 104 SGSSVNDKELVDEIKDTPVIGDVK---------------------LSDLIKDEKEENL-- 140

Query: 178 VIKDEFNGFKTCKDEGLGVGSC--DLIKGVVKTEKIEVGSCVDIGSLTL----KPENIAR 231
                   FK+  ++    G    ++ K  ++ +  E+    D   L L    +P  I +
Sbjct: 141 -----IEKFKSFANKNFSSGDFFEEIRKRQMENKAPELQKLQDDFDLQLYDVFQPNEI-K 194

Query: 232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNG-----------IYLFRT 280
           ++  RIT   F P  D +++VAG   GNI  WN+  +   +NG           +  F  
Sbjct: 195 LVYERITATYFHPSLDKKLIVAGDTSGNIGLWNVRDEPLSENGEDQMVEPDITKVKFFTK 254

Query: 281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMD----AEKEVFDL--VYSSEYAVFSLSQQP 334
           ++G I    +     SK+ T+ YDG +R +D       ++  L   Y     +       
Sbjct: 255 NVGKIDCFTSDT---SKLLTASYDGSLRSIDLNSLQSNDILTLRNEYDDPLGISDFQFSY 311

Query: 335 NNVNTLYFGEGQGGLNIWDVRSR----KSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390
            N N L      G     D+R +     S+    L + +I +   NP  P  +AT S D 
Sbjct: 312 ENPNVLLMTTLSGEFVNIDLREKIGEQISSNLRRLSDKKIGSFSINPNRPYEIATGSLDR 371

Query: 391 TACIWDLRSMAT----------DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           T  IWD+R +            D  E + V   + +V +  +SP+ ++L    +DDTI +
Sbjct: 372 TLKIWDIRKLVKKPEWSQYEDYDSCEIVSVYDSRLSVSAVSYSPTDNTLVCNGYDDTIRL 431

Query: 441 WS------GVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494
           +         + +    + HN Q+GRW S  +A +  D     I NM R +++   +Q +
Sbjct: 432 FDVGSDNLPDDLQPKLTLKHNCQSGRWTSILKARFKQDQDVFAIANMKRAIDIYD-SQGQ 490

Query: 495 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536
            +A L +   + +P     HP +   +AG    G+++++T +
Sbjct: 491 QLAHLPT---ATVPAVISWHPLR-NWIAGGNSSGKIFLFTDE 528

Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (taxid: 436907)

>sp|A3LWH8|YD156_PICST WD repeat-containing protein PICST_83842 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=PRW1 PE=3 SV=2

 Score =  127 bits (320), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 141/570 (24%), Positives = 254/570 (44%), Gaps = 100/570 (17%)

Query: 5   KLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPI 64
           K++E+ER+R ENI+RN+E+L +L + +    LS + KR   E+     + ++K+ P T  
Sbjct: 3   KISEFERQRQENIQRNKELLKSLNLDS----LSQSIKR---ELPRASETKKRKTTPRT-- 53

Query: 65  VLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETGTFVSL 124
              ++++ + ++P  +      + S+ +  +  + KKS    G L F++  +++ +    
Sbjct: 54  ---KAVKKEDVEPSRRSRRIAGIKSELENPEEYNHKKS----GSLKFEDKVIKSDS---- 102

Query: 125 VDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKDEFN 184
                    +P   E+K+E    L  ++K    V   ++  G K    +    + K+   
Sbjct: 103 --------TEP---EVKQEEKEELSEDIKNDNKVLHRLQALGDKFSAGDFFDIIQKNPIQ 151

Query: 185 G----FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQM 240
                 ++ +DE       D +K   K   +++                 +I   RIT +
Sbjct: 152 YDDKVLQSTRDE------FDKLKIYEKHNPLDI-----------------KISHTRITAI 188

Query: 241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQYCLSKIF 299
            F P +  R+V AG   GN+  W +DS +D+ +  I + R H   IS I+T     +K++
Sbjct: 189 NFHPSTTDRVVAAGDTNGNVGIWAVDSGEDDSEPTISILRPHGKAISRILTPVAEQNKLY 248

Query: 300 TSCYDGLIRLMDAEK----EVF---DLVYSSEYA--VFSLSQQPNNVNTLYFGEGQGGLN 350
           ++ YDG +R++D  K    EV    D   + +YA  V  ++   ++ N LY     G  +
Sbjct: 249 SASYDGSVRVLDLNKLASTEVVYLNDPYENDDYALGVSDINFCASDANLLYMTTLSGSFH 308

Query: 351 IWDVRS----RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE 406
             D+R+     KS     LH+ +I +   NP N   +AT+S D T  IWDLR+++    E
Sbjct: 309 KHDIRTPFKPLKSKDILRLHDKKIGSFSINPNNTYQIATASLDRTLRIWDLRNVSKANAE 368

Query: 407 ----PMKVLSHKRAVHSAYFS------PSGSSLATTSFDDTIGIWS-------GVNFENT 449
                 ++  H     S+  S       S + L    +DD I I+          N +  
Sbjct: 369 WSEFENQISPHLYGSFSSRLSVSCVDWNSENRLVCNGYDDYINIFDLNEESLIPDNLKAF 428

Query: 450 SMIHHNNQTGRWISSFRAIW--GWDDSC--VFIGNMTRTVEVISPAQRRSVATLQSPYIS 505
           + I HN QTGRW+S  ++ W    +D      I NM R +++    Q+  +    +  + 
Sbjct: 429 NKIKHNCQTGRWVSILKSKWQVAPEDGVQKFVIANMNRALDIYD--QKGQIIAHLTDSVG 486

Query: 506 AIP--CRFHAHPHQVGTLAGATGGGQVYVW 533
           A+P  C FH   + V    G +  G+VY++
Sbjct: 487 AVPAVCGFHPTKNWV---VGGSASGKVYLF 513

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

>sp|Q7S1H9|YD156_NEUCR WD repeat-containing protein NCU09302/NCU11420 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU09302 PE=3 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 162/581 (27%), Positives = 243/581 (41%), Gaps = 109/581 (18%)

Query: 1   MAPEK----LTEYERKRLENIKRNEEMLAALKVHA-KASDLSAASKRQRVEIKAYKVSPQ 55
           M P K    ++E+ERKRLENI  N  +L+ +   A K     A  K +R      K  P 
Sbjct: 1   MPPRKKETVMSEFERKRLENIAYNNAILSGISTTADKIIPKPAPPKPKRASTPRVKREPV 60

Query: 56  KKSKPETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAY 115
           KK   E     R+S R  G++ DS  L    +  + +   + +  K   ++G L+  +  
Sbjct: 61  KK---EAARPTRQSSRLAGLEADSAVLK-RKLDVEAEEEAAKAKAKRMRVSGDLNLGDIT 116

Query: 116 VETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENL 175
           VE   + S  D  L++ K                       G+ V   + GV+       
Sbjct: 117 VEGRKWESSAD-GLALLK-----------------------GLGVRGAQPGVRT------ 146

Query: 176 GFVIKDEFNGFKTCKDEGLGVGSCDL---IKGVVKTEKIEVGSCVDIGSLTLKPENIARI 232
            F  KD     K  KD+GL     DL   + G+   EK  V              N  +I
Sbjct: 147 -FTEKD----VKHTKDKGL----KDLRLRMSGLKLYEKWAV--------------NDIKI 183

Query: 233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS-----QQDEDNGIY------LFRTH 281
           +P RI  M F P  +  ++ AG K G +  ++        + D+++  Y       F+TH
Sbjct: 184 VPQRIYSMCFHPTEEKPIIFAGDKEGAMGVFDASQPTPKIEDDDEDAEYPDPIISAFKTH 243

Query: 282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----EVFDLVYSSEYAVFSLSQQPN-N 336
              IS         + I+++ YD  IR +D +K    E+F    SSE    S    P  +
Sbjct: 244 SRTISSFHFSPTDANAIYSASYDSSIRKLDLDKGISTEIFAPSSSSEDLPISAIDIPTTD 303

Query: 337 VNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIW 395
            N + F    G L   D R++ S+ E W L + +I     +PR+P ++AT+S D T  IW
Sbjct: 304 PNMIIFSTLHGSLGRQDQRTKPSSAEIWGLTDHKIGGFSLHPRHPYLVATASLDRTLKIW 363

Query: 396 DLRSMA--TDKPEPMKVLSHK-RAVHSAYFSPSGSSLATTSFDDTIGIWS---------- 442
           DLR +    D   P  +  H+ R   S     S   +AT+S+DD I I+S          
Sbjct: 364 DLRKITGKGDLRHPALLGEHESRLSVSHASWSSSGHIATSSYDDRIKIYSFPSAGEWKAG 423

Query: 443 ----GVNFENTSMIHHNNQTGRWISSFRAIW------GWDDSCVFIGNMTRTVEVISPAQ 492
                   + T  I HNNQTGRW++  +  W      GW      IGNM R V+V +   
Sbjct: 424 HDIPAKEMQPTVEIPHNNQTGRWVTILKPQWQRNPQDGWQKFA--IGNMNRFVDVYA-ED 480

Query: 493 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
              +A L    I+A+P   H HP +   +AG T  G++ +W
Sbjct: 481 GEQLAQLGGDGITAVPAVAHFHPTK-DWVAGGTASGKLCLW 520

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q9H967|WDR76_HUMAN WD repeat-containing protein 76 OS=Homo sapiens GN=WDR76 PE=1 SV=2

 Score =  126 bits (316), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 168/333 (50%), Gaps = 18/333 (5%)

Query: 217 VDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY 276
            ++  + +  + + ++  G I  M   P     +V  G+K G +   +L +QQ +++G+Y
Sbjct: 296 ANLNGMVISEDTVYKVTTGPIFSMALHPSETRTLVAVGAKFGQVGLCDL-TQQPKEDGVY 354

Query: 277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-SLSQQPN 335
           +F  H  P+S +       + I +  YDG +R  D  + +F+ VY +E + F S      
Sbjct: 355 VFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSSFDFLAE 414

Query: 336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTDGTAC 393
           + +TL  G   G +++ D R+  ++ E L   +  +I T+  +P +     T+    T  
Sbjct: 415 DASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTH- 473

Query: 394 IWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-- 449
           I+D R + + + +P+  L+ H +++ SAYFSP +G+ + TT  D  + I+      +   
Sbjct: 474 IYDARRLNSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIP 533

Query: 450 --SMIHHNNQTGRWISSFRAIWG-WDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPYI 504
             + I HN  TGRW++ F+A+W    + CV +G+M   R VE+     +R V +    Y+
Sbjct: 534 LLTTIRHNTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRVEIFHETGKR-VHSFGGEYL 592

Query: 505 SAIPCRFHA-HPHQVGTLAGATGGGQVYVWTSD 536
            ++ C  +A HP +   LAG    G+++V+ ++
Sbjct: 593 VSV-CSINAMHPTRY-ILAGGNSSGKIHVFMNE 623

Homo sapiens (taxid: 9606)

>sp|A1DNV8|YD156_NEOFI WD repeat-containing protein NFIA_058290 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_058290 PE=3 SV=1

 Score =  125 bits (314), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 143/588 (24%), Positives = 244/588 (41%), Gaps = 120/588 (20%)

Query: 2   APEKLTEYERKRLENIKRNEEMLAALKVHAKASDL----SAASKRQRVEIKAYKVSPQKK 57
           A  +L+E+E++RL NI   + +L  L + A+++ L    SA S    +     K +P+K 
Sbjct: 3   ADNELSEFEKQRLANIAERDALLKKLTLDAQSAGLFPPKSARSSPGGLTKPKKKPAPKKV 62

Query: 58  SKPETPIVLRR-SLRTQGMQPDS---KGLSDHSVASDPKTSKSVSPKKSSAMTGPLSFKN 113
            K +  +V RR S R +G+  DS   K  +D    +  +  ++   +KS A +      +
Sbjct: 63  KKEDEDLVPRRMSSRLRGLAADSEVAKRKADEQYEAAQQAERAKRVRKSDAFSFSEMLVS 122

Query: 114 AYVETGTFVSLVDVFLSVAKKPH---FGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKAC 170
               +G  +  VDV       P+   FG+                         D +K  
Sbjct: 123 GQKLSGDSLIGVDVVTKGVAMPYQRTFGD-------------------------DDIKKT 157

Query: 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA 230
            D+ L   +++E +G +  +                                  +P  I 
Sbjct: 158 TDKELK-ALREEMSGLRLWE--------------------------------AWEPNRI- 183

Query: 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE------------------D 272
           ++ P RI  M F P     ++ AG K+GN+    LD+ Q++                  D
Sbjct: 184 KLTPERIYTMTFHPSEAKPLIFAGDKMGNLGV--LDASQEKPISAVKQEDDEDAEDDDPD 241

Query: 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAV 327
             +   + H   IS +       + ++++ YD  IR +D EK      Y+ E       +
Sbjct: 242 PVLTTLKPHTRTISSMHVHPSKPTHLYSASYDSSIRELDLEKTTSVEKYAPESTSDDIPI 301

Query: 328 FSLSQQPNNVNTLYFGEGQGGLNIWDVR-SRKSATE-WLLHEARINTIDFNPRNPNIMAT 385
             +   P++ NTLY+    G    +D R SR+SA   W L E +I      P +P+  AT
Sbjct: 302 SGIDMAPDDPNTLYWTTLDGAFGRYDTRASRRSAVATWQLSEKKIGGFSLFPTHPHFFAT 361

Query: 386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW---- 441
           +S D T  +WD+R ++ D+P P+     + +V  A F+ +G  +AT+S+DDT+ I+    
Sbjct: 362 ASLDRTMRLWDIRKLSHDEPVPVGEHVSRLSVSHAAFNSAG-QIATSSYDDTLKIYDFGS 420

Query: 442 ------------SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVF----IGNMTRTV 485
                       S    +  +++ HN QTGRW++  R  W  +         IGNM R V
Sbjct: 421 KGIAAWKPGHTLSDAEMKPDTIVRHNCQTGRWVTILRPQWQANPQSPIQRFCIGNMNRFV 480

Query: 486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
           +V S +  + +A L    I+A+P     H      +AG T  G++ +W
Sbjct: 481 DVYSSSGDQ-LAQLGGDGITAVPAVAVFH-RSTNWIAGGTASGKICLW 526

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|B2KIQ4|WDR76_RHIFE WD repeat-containing protein 76 OS=Rhinolophus ferrumequinum GN=WDR76 PE=3 SV=2

 Score =  121 bits (304), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 160/331 (48%), Gaps = 21/331 (6%)

Query: 218 DIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL 277
           ++  + +  + + ++  G I  + F P     +V AG+K G +  W+L  Q  ED G+Y+
Sbjct: 304 NLSGMVISEDTVYKVTKGAIFSIAFHPSEIKTLVAAGAKSGQVGLWDLTHQPKED-GVYV 362

Query: 278 FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-SLSQQPNN 336
           F+ H  P+S +       + + +  YDG +R  D    VF+ VY +E +   S      +
Sbjct: 363 FQPHSQPVSCLYFSPANPAHMLSLSYDGTLRCGDISSAVFEEVYRNERSSLSSFDFLAED 422

Query: 337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTDGTACI 394
            +T   G   G +++ D R+  ++ E L+  +  +I T+  +P       T+    T  I
Sbjct: 423 ASTFIVGHWDGSISLVDRRTPGASYEKLISSSLRKIRTVHVHPVQRQYFITAGLRDTH-I 481

Query: 395 WDLRSMATDKPEPMKVLS-HKRAVHSAYFSP-SGSSLATTSFD------DTIGIWSGVNF 446
           +D R +     +P+  L+ H +++ SAYFSP +G+ + TT  D      D+  I S +  
Sbjct: 482 YDARRLTPSGSQPLISLTEHTKSIASAYFSPLTGNRIVTTCADCKLRFFDSSCISSQIPL 541

Query: 447 ENTSMIHHNNQTGRWISSFRAIWG-WDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPY 503
             T  I HN  TGRW++  RA+W    + CV IG+M   R VE+      +  + L    
Sbjct: 542 LTT--IRHNTITGRWLTRLRAVWDPKQEDCVIIGSMAHPRQVEIFHETGEQVHSFLGGEC 599

Query: 504 ISAIPCRFHA-HPHQVGTLAGATGGGQVYVW 533
           + ++ C  +A HP +   LAG    G+++V+
Sbjct: 600 LVSV-CSINAVHPTRY-ILAGGNSSGKIHVF 628

Rhinolophus ferrumequinum (taxid: 59479)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
224142439	513	predicted protein [Populus trichocarpa]	0.927	0.968	0.58	1e-178
255565065	530	protein with unknown function [Ricinus c	0.973	0.984	0.590	1e-176
449457991	545	PREDICTED: WD repeat-containing protein	0.988	0.972	0.536	1e-155
449505377	521	PREDICTED: WD repeat-containing protein	0.947	0.975	0.542	1e-153
225462990	489	PREDICTED: WD repeat-containing protein	0.895	0.981	0.528	1e-152
297839865	520	transducin family protein [Arabidopsis l	0.947	0.976	0.514	1e-149
15220206	516	drought-sensitive 1 protein [Arabidopsis	0.945	0.982	0.514	1e-146
356548455	455	PREDICTED: WD repeat-containing protein	0.843	0.993	0.458	1e-128
296084594	450	unnamed protein product [Vitis vinifera]	0.600	0.715	0.648	1e-126
356548457	459	PREDICTED: WD repeat-containing protein	0.625	0.729	0.567	1e-116

>gi|224142439|ref|XP_002324565.1| predicted protein [Populus trichocarpa] gi|222865999|gb|EEF03130.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/550 (58%), Positives = 400/550 (72%), Gaps = 53/550 (9%)

Query: 1   MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRV-EIKAYKVSPQKK-S 58
           MA +KLTEYE KRLENI+RN+EMLAAL++HAKAS LS A+KR R    K+YKVSP+KK  
Sbjct: 1   MATQKLTEYEIKRLENIRRNDEMLAALQLHAKASLLSNATKRSRDGSAKSYKVSPEKKPK 60

Query: 59  KPETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTS---KSVSPKKSS-AMTGPLSFKNA 114
           K ETPIV+RRSLRT+GM PDS  L   S  +  KT+    S+S +K S  + GPL  K+A
Sbjct: 61  KAETPIVIRRSLRTRGMPPDSNCLDADSNENSDKTTLNQTSISREKPSPCVMGPLKMKDA 120

Query: 115 YVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDEN 174
           +  TG+    +D  LS                   +E KPK+GV V              
Sbjct: 121 HDGTGSDREFIDTLLS-------------------FERKPKLGVGV-------------- 147

Query: 175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVV---------KTEKIEVGSCVDIGSLTLK 225
                K+EF+ FK  K+EG     C  +K  V         K EK E   CVD+GS++L+
Sbjct: 148 -----KEEFDCFKVVKEEGHDRVLCGPVKRKVENDNLNCGIKIEKREFEGCVDLGSMSLE 202

Query: 226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPI 285
           PENIARIMPGRI  ++F P +D+ +V AG+KLGN+ FWN+DS+ ++ +GI+L+R H GPI
Sbjct: 203 PENIARIMPGRIMTVRFFPRNDINIVAAGNKLGNVAFWNVDSEGEKGDGIFLYRPHTGPI 262

Query: 286 SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG 345
           SGI+ QQ CLSKIFTSCYDG +RLMDAEKEVFDLV+S + A+FSLSQ PN+V +LYFGEG
Sbjct: 263 SGILFQQSCLSKIFTSCYDGYLRLMDAEKEVFDLVHSCDDAIFSLSQHPNDVKSLYFGEG 322

Query: 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           +GGL++WD R+   +++W LHE RINTIDFNP+NPNIMATSS+D T C+WDLR +   KP
Sbjct: 323 RGGLSVWDDRTGSVSSQWTLHEDRINTIDFNPQNPNIMATSSSDATVCLWDLRKVDAGKP 382

Query: 406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465
           + +K+++H+RAVHSAYFSPSGSSLA+TSFDDT+GI SGVNFE+ S +HH NQTGRWISSF
Sbjct: 383 KSLKIVNHERAVHSAYFSPSGSSLASTSFDDTVGILSGVNFEDASRVHHCNQTGRWISSF 442

Query: 466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT 525
           RA WGWDDS V++GNM R V++ISPAQRR + TLQSP+++AIPCRFHAHP +VG LAGAT
Sbjct: 443 RATWGWDDSFVYVGNMKRGVDIISPAQRRVIRTLQSPHMTAIPCRFHAHPFRVGMLAGAT 502

Query: 526 GGGQVYVWTS 535
           GGGQVY+WTS
Sbjct: 503 GGGQVYIWTS 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565065|ref|XP_002523525.1| protein with unknown function [Ricinus communis] gi|223537232|gb|EEF38864.1| protein with unknown function [Ricinus communis]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 320/542 (59%), Positives = 407/542 (75%), Gaps = 20/542 (3%)

Query: 1   MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAAS-KRQRV-EIKAYKVSPQKKS 58
           MAP+KLTEYE+KRLENI+RN+EM+AALK+HA AS LSAA+ KRQR+   K+YK SP+KK 
Sbjct: 1   MAPQKLTEYEKKRLENIRRNDEMMAALKIHAAASQLSAAAAKRQRIGSSKSYKASPEKKK 60

Query: 59  -KPETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSP---KKSSAMTGPLSFKNA 114
            K ++PIV+R+SLR +GM P+S GL DH  +  P  + + +    K S  + GPLS  +A
Sbjct: 61  PKNDSPIVIRQSLRIRGMPPNSIGL-DHDFSGMPSVNAATTSAVQKPSPRVMGPLSMTDA 119

Query: 115 YVETGTFVSLVDVFLSVAKKPHFG-EIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDE 173
           Y  TG+F +L+D  +S+  KP  G  +K+    S+  E K  VGVSV  + DG +A K E
Sbjct: 120 YSGTGSFRALIDTVVSLETKPQVGLSVKKGLGVSI--ESKTHVGVSVKKEVDGYEAVKVE 177

Query: 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIM 233
               +    FNG          V   + +   VK EK EV  CVD+ S+ LK EN+AR++
Sbjct: 178 RSDGI----FNGPVKS------VVEYEYLDSGVKIEKKEVEGCVDLWSMNLKQENVARVL 227

Query: 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY 293
           PGRI  +KFLPC+DVRM+VAG+K GN+ FWN+DS+ ++ +GIYLFR H GPISGI+ QQ 
Sbjct: 228 PGRIMVVKFLPCNDVRMIVAGNKFGNVAFWNVDSEGEDGDGIYLFRQHTGPISGILFQQS 287

Query: 294 CLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD 353
           CLSKIFTSCYDG +RLM+AEKEVFDLVYSS+  +FSLSQQPN+ N LYFGEG+GGL++WD
Sbjct: 288 CLSKIFTSCYDGYLRLMNAEKEVFDLVYSSDDTIFSLSQQPNDTNGLYFGEGRGGLSVWD 347

Query: 354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH 413
            R+ + + +W LHE RIN+IDFN +NPNIMATSSTDGTAC+WD+RS++  KP+ +K++SH
Sbjct: 348 ERTGRLSFQWDLHEDRINSIDFNSQNPNIMATSSTDGTACLWDIRSVSPAKPKSLKIVSH 407

Query: 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD 473
            RAVHSAYFSPSGS LATTS D+T+G+ S  +FE+T  I H NQTGRWISSFRAIWGWDD
Sbjct: 408 NRAVHSAYFSPSGSYLATTSPDNTVGVLSTADFEDTCRIDHYNQTGRWISSFRAIWGWDD 467

Query: 474 SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
           S +FIGNM R V++IS  QRR++ TLQSP++SAIPCRF AHP+ VG LAGAT GGQVY+W
Sbjct: 468 SYIFIGNMKRGVDIISRPQRRAILTLQSPHMSAIPCRFDAHPYNVGMLAGATSGGQVYIW 527

Query: 534 TS 535
           TS
Sbjct: 528 TS 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457991|ref|XP_004146731.1| PREDICTED: WD repeat-containing protein 76-like [Cucumis sativus]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 292/544 (53%), Positives = 370/544 (68%), Gaps = 14/544 (2%)

Query: 1   MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQR--VEIKAYKVSPQKKS 58
           MA + LT+YER+RLENI+RN+EMLAALK+ +KAS+LSAA       VE K+ KV P+ K 
Sbjct: 1   MASQALTDYERQRLENIRRNDEMLAALKLQSKASELSAALSLSLSLVETKSEKVYPKTKP 60

Query: 59  KPETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSSA---MTGPLSFKNAY 115
           K ETP+VLRRSLR +G+ PD+K L D    ++  T    S  KS +   + GPL      
Sbjct: 61  KKETPMVLRRSLRARGIPPDAKKLVDIDDLTESATKIRKSETKSMSSPRVLGPLEMVEVC 120

Query: 116 VETGTFVSLVDVFLSVAKKPHFGEI-KEEFNASL-DYEMKPKVGV---SVSVKEDGVKAC 170
            E  +  SL++  L V  K       KEE    + +++M  + G     V ++  G   C
Sbjct: 121 SERESHPSLIESILGVLSKSLLSRSGKEELVDDVKEFKMGGRNGNFSNEVEIEGGGDGNC 180

Query: 171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA 230
               L     D ++       EGL     D +   +K E    GSC+   SL L  +NIA
Sbjct: 181 ----LKMDPIDNYSNLIKRVTEGLISDVKDPLLSSIKMEHKNDGSCLKPASLVLNADNIA 236

Query: 231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT 290
           R++PGRI  ++F PC D +M+V G+K G + FWN D + +E NG+YL+  H GPISGI  
Sbjct: 237 RVVPGRIMAVRFFPCLDSKMIVVGNKFGEVGFWNADHEGEEGNGVYLYHPHSGPISGISI 296

Query: 291 QQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLN 350
           Q++ LSK++TSCYDG IRLMD EKE+FDLVY +E  +FSLSQQ N+ N LYF EG+GGLN
Sbjct: 297 QRHALSKVYTSCYDGFIRLMDVEKEMFDLVYRNEDTIFSLSQQSNDANCLYFSEGRGGLN 356

Query: 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410
           IWD R+     EW LHE RIN+IDFN  N NIMATSS+DGTACIWDLRS++ +KP+ +K 
Sbjct: 357 IWDKRTGNCTMEWTLHEDRINSIDFNVGNSNIMATSSSDGTACIWDLRSVSDEKPQTLKT 416

Query: 411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470
           ++HK+A+HSAYFSPSG  LATTSFDDT+GI+ GVNF++TS+I H+NQTGRWISSFRAIWG
Sbjct: 417 ITHKKAIHSAYFSPSGRFLATTSFDDTVGIYGGVNFKDTSLIPHDNQTGRWISSFRAIWG 476

Query: 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 530
           WDDS +FIGNM R V+VIS A R+ V  LQSP ISAIPCRF AHP+ VGTLAGAT GGQV
Sbjct: 477 WDDSYIFIGNMKRAVDVISRAYRKRVFVLQSPKISAIPCRFDAHPYDVGTLAGATSGGQV 536

Query: 531 YVWT 534
           Y+WT
Sbjct: 537 YMWT 540

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505377|ref|XP_004162450.1| PREDICTED: WD repeat-containing protein 76-like [Cucumis sativus]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 282/520 (54%), Positives = 355/520 (68%), Gaps = 12/520 (2%)

Query: 23  MLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPIVLRRSLRTQGMQPDSKGL 82
           MLAALK+ +KAS+LSAASKRQRVE K+ KV P+ K K ETP+VLRRSLR +G+ PD+K L
Sbjct: 1   MLAALKLQSKASELSAASKRQRVETKSEKVYPKTKPKKETPMVLRRSLRARGIPPDAKKL 60

Query: 83  SDHSVASDPKTSKSVSPKKSSA---MTGPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGE 139
            D    ++  T    S  KS +   + GPL       E  +  SL++  L V  K     
Sbjct: 61  VDIDDLTESATKIRKSETKSMSSPRVLGPLEMVEVCSERESHPSLIESILGVLSKSLLSR 120

Query: 140 I-KEEFNASL-DYEMKPKVGV---SVSVKEDGVKACKDENLGFVIKDEFNGFKTCKDEGL 194
             KEE    + +++M  + G     V ++  G   C    L     D ++       EGL
Sbjct: 121 SGKEELVDDVKEFKMGGRNGNFSNEVEIEGGGDGNC----LKMDPIDNYSNLIKRVTEGL 176

Query: 195 GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG 254
                D +   +K E    GSC+   SL L  +NIAR++PGRI  ++F PC D +M+V G
Sbjct: 177 ISDVKDPLLSSIKMEHKNDGSCLKPASLVLNADNIARVVPGRIMAVRFFPCLDSKMIVVG 236

Query: 255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK 314
           +K G + FWN D + +E NG+YL+  H GPISGI  Q++ LSK++TSCYDG IRLMD EK
Sbjct: 237 NKFGEVGFWNADHEGEEGNGVYLYHPHSGPISGISIQRHALSKVYTSCYDGFIRLMDVEK 296

Query: 315 EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTID 374
           E+FDLVY +E  +FSLSQQ N+ N LYF EG+GGLNIWD R+     EW LHE RIN+ID
Sbjct: 297 EMFDLVYRNEDTIFSLSQQSNDANCLYFSEGRGGLNIWDKRTGNCTMEWTLHEDRINSID 356

Query: 375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF 434
           FN  N NIMATSS+DGTACIWDLRS++ +KP+ +K ++HK+A+HSAYFSPSG  LATTSF
Sbjct: 357 FNVGNSNIMATSSSDGTACIWDLRSVSDEKPQTLKTITHKKAIHSAYFSPSGRFLATTSF 416

Query: 435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR 494
           DDT+GI+ GVNF++TS+I H+NQTGRWISSFRAIWGWDDS +FIGNM R V+VIS A R+
Sbjct: 417 DDTVGIYGGVNFKDTSLIPHDNQTGRWISSFRAIWGWDDSYIFIGNMKRAVDVISRAYRK 476

Query: 495 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT 534
            V  LQSP ISAIPCRF AHP+ VGTLAGAT GGQVY+WT
Sbjct: 477 RVFVLQSPKISAIPCRFDAHPYDVGTLAGATSGGQVYMWT 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462990|ref|XP_002264232.1| PREDICTED: WD repeat-containing protein 76-like [Vitis vinifera]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/543 (52%), Positives = 366/543 (67%), Gaps = 63/543 (11%)

Query: 1   MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKP 60
           M  + LT+YER+RLENI+RN EM+A+LK+H+KA+ LS  +KR+RVE K+ KVSP+KK K 
Sbjct: 1   MDLQNLTDYERRRLENIRRNNEMVASLKLHSKAAALSEEAKRRRVESKSNKVSPKKKPKT 60

Query: 61  ETPIVLRRSLRTQGMQPD---SKGLSDHSVASDPKTSKSVS----PKKSSAMTGPLSFKN 113
           E+PIV+RRSLRT+G+ PD     GL D  V S  K  KS S     K  S   GPLS ++
Sbjct: 61  ESPIVIRRSLRTRGLPPDFSSGNGLKDEFVESMIKGPKSPSTPEGSKSPSLPEGPLSIRD 120

Query: 114 AYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDE 173
                      +D  L V+K+    +++     S D E+  K                 +
Sbjct: 121 RV--------FLDKILGVSKE---SQLRNSDKCSADDEVDEK-----------------K 152

Query: 174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIM 233
            L  +IK E  G                           V   VD+GS+TL  ENIARIM
Sbjct: 153 PLDCLIKRESRG--------------------------GVEGSVDLGSMTLNAENIARIM 186

Query: 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY 293
           PGRI  ++F PC D  M+VAG K G+I FW++D +++ D G++L++ H  P+SGI+ Q++
Sbjct: 187 PGRIMNLRFFPCIDSTMIVAGDKSGHIGFWDVDCEKERD-GVFLYQPHKDPVSGILIQEF 245

Query: 294 CLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD 353
             SKIFTSCY G I+LMDAEKEVFD +YSSE A+FSLSQ+PN VN LYFGEG GGLN+WD
Sbjct: 246 SQSKIFTSCYGGSIQLMDAEKEVFDKIYSSESAIFSLSQRPNYVNCLYFGEGNGGLNLWD 305

Query: 354 VRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS 412
           +R+ K  ++ W LHE RINTIDFN  NPNIMATSS+D TACIWDLR + +DKP+ +K +S
Sbjct: 306 MRAGKEPSSSWPLHEYRINTIDFNINNPNIMATSSSDATACIWDLRKIDSDKPKTLKTVS 365

Query: 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD 472
           H RAVHSAYFSPSGSSLATTS ++ +G+  GVNFE+ SMI+H N   RWISSFRAIWGWD
Sbjct: 366 HARAVHSAYFSPSGSSLATTSVENKVGLLGGVNFEDLSMIYHENHMCRWISSFRAIWGWD 425

Query: 473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV 532
           DS +FIGNM R V++IS A R++V TLQS ++SAIPCRF AHP++VG LAGATGGGQ+Y+
Sbjct: 426 DSYLFIGNMKRGVDIISTACRKTVMTLQSAHMSAIPCRFSAHPYKVGMLAGATGGGQIYM 485

Query: 533 WTS 535
           W S
Sbjct: 486 WKS 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839865|ref|XP_002887814.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297333655|gb|EFH64073.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/538 (51%), Positives = 355/538 (65%), Gaps = 30/538 (5%)

Query: 7   TEYERKRLENIKRNEEMLAALKVHAKASDL---SAASKRQRVEIKAYKVSPQKKSKPETP 63
           TEYERKRLENI+RN+EM+AAL V AKAS L   + A+KR R + K++K    K +     
Sbjct: 3   TEYERKRLENIRRNDEMMAALNVRAKASSLLSAATAAKRSRDDSKSFKKKKPKPATTTP- 61

Query: 64  IVLRRSLRTQGMQPDSKGL----SDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETG 119
            V+R+SLRT+G+ PDS GL    SD  + S     K    K+S  +  PL F +AY   G
Sbjct: 62  TVIRKSLRTRGLNPDSAGLPDGFSDFRMGSQITHHKPSPKKQSPRLLAPLPFDSAYEGDG 121

Query: 120 TFVSLVDVFLSVAKKPHFGE-IKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFV 178
           ++  LVD  L V  K   G+ +K E  +  D    P V    + +   V   K+E     
Sbjct: 122 SYTQLVDTLLGVESKSCRGKLVKGETGSVKDENESPMVSTRSTSRVSKVSVKKEE----- 176

Query: 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRIT 238
                + F  C  +   +         VK EKIE     D   L+L+P N+AR++PGRI 
Sbjct: 177 ---PDDSFSDCVKKEFDIP--------VKPEKIEF----DQDLLSLEPHNVARVVPGRIF 221

Query: 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN-GIYLFRTHLGPISGIVTQQYCLSK 297
            ++FLPC D +MV AG KLGN+ FWNLD + +EDN GIYLF  H  P+S IV QQ  LS+
Sbjct: 222 VVQFLPCEDAKMVAAGDKLGNVGFWNLDCENEEDNDGIYLFTPHSAPVSSIVFQQNSLSR 281

Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357
           + TS YDGLIRLMD EK VFDL+YS++ A+FSLSQ+PN+  +LYFGE  G  NIWD+R+ 
Sbjct: 282 VITSSYDGLIRLMDVEKSVFDLLYSTDEAIFSLSQRPNDEQSLYFGEDYGMFNIWDLRAG 341

Query: 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV 417
           KS   W LHE RIN+IDFNP+NP++MATSSTDGTAC+WDLRSM   KP+ +  L+H RAV
Sbjct: 342 KSVFHWELHEQRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKILTTLNHSRAV 401

Query: 418 HSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVF 477
           HSAYFSPSG  LATTS D+ IGI SG NFENT  I+HNN T RWIS FRA+WGWDDS ++
Sbjct: 402 HSAYFSPSGLLLATTSLDNYIGILSGANFENTYKIYHNNNTSRWISKFRAVWGWDDSYIY 461

Query: 478 IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535
           +GN+++ ++VI+P  +R+V  L +P + AIPCR H HP+ VGTLAG+T GGQVYVWT+
Sbjct: 462 VGNLSKKIDVINPKLKRTVMELHNPLMKAIPCRIHCHPYNVGTLAGSTAGGQVYVWTA 519

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220206|ref|NP_178186.1| drought-sensitive 1 protein [Arabidopsis thaliana] gi|6503282|gb|AAF14658.1|AC011713_6 Contains similarity to gb|AF092102 G-protein beta subunit git5p from Schizosaccharomyces pombe and contains 2 PF|00400WD domain, G-beta repeat domains [Arabidopsis thaliana] gi|332198318|gb|AEE36439.1| drought-sensitive 1 protein [Arabidopsis thaliana]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 275/535 (51%), Positives = 360/535 (67%), Gaps = 28/535 (5%)

Query: 7   TEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPIVL 66
           TEYERKRLENI+RN+EMLAAL V AKAS L +A+KR R + K++K    K +   T  V+
Sbjct: 3   TEYERKRLENIRRNDEMLAALNVRAKASSLLSAAKRSRDDSKSFKKKKPKPASTPT--VI 60

Query: 67  RRSLRTQGMQPDSKGL----SDHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETGTFV 122
           R SLRT+G+ PDS GL    SD  + S    ++    K+S  +  P+ F++AY   G++ 
Sbjct: 61  RMSLRTRGLNPDSAGLPDGFSDFRMGSQITHNQPSPQKQSPRLLAPIPFESAYEGYGSYT 120

Query: 123 SLVDVFLSVAKKPHFGE-IKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIKD 181
            LVD  L +  K   G+ +K E     D    P V    S +   V   K+E        
Sbjct: 121 QLVDTLLGIESKSCRGKLVKGEIGVVKDENESPMVRTRSSSRVSKVSVKKEE-------P 173

Query: 182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMK 241
           E + F    ++   +         VK EKIE     D+  LTL+P+N+AR++PGRI  ++
Sbjct: 174 EDDSFSDYVNKEFSIP--------VKPEKIEF----DLDLLTLEPQNVARVVPGRIFVVQ 221

Query: 242 FLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN-GIYLFRTHLGPISGIVTQQYCLSKIFT 300
           FLPC +V+MV AG KLGN+ FWNLD   +EDN GIYLF  H  P+S IV QQ  LS++ +
Sbjct: 222 FLPCENVKMVAAGDKLGNVGFWNLDCGNEEDNDGIYLFTPHSAPVSSIVFQQNSLSRVIS 281

Query: 301 SCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA 360
           S YDGLIRLMD EK VFDLVYS++ A+FSLSQ+PN+  +LYFG+  G  N+WD+R+ KS 
Sbjct: 282 SSYDGLIRLMDVEKSVFDLVYSTDEAIFSLSQRPNDEQSLYFGQDYGVFNVWDLRAGKSV 341

Query: 361 TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA 420
             W LHE RIN+IDFNP+NP++MATSSTDGTAC+WDLRSM   KP+ +  ++H RAVHSA
Sbjct: 342 FHWELHERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKTLSTVNHSRAVHSA 401

Query: 421 YFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN 480
           YFSPSG SLATTS D+ IG+ SG NFENT MI+HNN T RWIS F+A+WGWDDS +++GN
Sbjct: 402 YFSPSGLSLATTSLDNYIGVLSGANFENTCMIYHNN-TSRWISKFKAVWGWDDSYIYVGN 460

Query: 481 MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535
           +++ ++VI+P  +R+V  L +P   AIPCR H HP+ VGTLAG+T GGQVYVWT+
Sbjct: 461 LSKKIDVINPKLKRTVMELHNPLQRAIPCRIHCHPYNVGTLAGSTAGGQVYVWTT 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548455|ref|XP_003542617.1| PREDICTED: WD repeat-containing protein 76-like [Glycine max]

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 246/537 (45%), Positives = 329/537 (61%), Gaps = 85/537 (15%)

Query: 1   MAPEKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVE-IKAYKVSPQKKSK 59
           MAP KLT+YERKRLENI+RN+E++A+LK+H+KA+ LS   KR RVE  K++ V P    K
Sbjct: 1   MAPRKLTDYERKRLENIRRNDEVMASLKLHSKATQLSNF-KRPRVEQTKSHNVKP----K 55

Query: 60  PETPIVLRRSLRTQGMQPDSKGLSDHSVASDPKTSKSVSPKKSS-AMTGPLSFKNAYVET 118
            +TPIV+RRSLRT+ + P                  S +P K+  + +GPLS  +A   T
Sbjct: 56  IQTPIVIRRSLRTRVIPP-----------------HSTTPSKTEPSSSGPLSMSDARHGT 98

Query: 119 GTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFV 178
            +  S +   +                                        C  +     
Sbjct: 99  HSHSSFIQSLM----------------------------------------CMAKKQAQT 118

Query: 179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRIT 238
           ++D+   F              L    VK EK+E  + + + SL L PENIAR++PGRIT
Sbjct: 119 VRDKVGRF--------------LNDVSVKEEKME--TSLRLKSLHLDPENIARVVPGRIT 162

Query: 239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI 298
            ++F P + V+M+ AG++ G+I FWN+  ++     ++L+  HL  ISGI+ Q +C SKI
Sbjct: 163 DVRFFPSTSVKMIAAGNRFGHIGFWNVGQRE-----VHLYHPHLAQISGILIQPHCFSKI 217

Query: 299 FTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK 358
           +TSCYDG +RLMDAEKE+FDLV  S+  +F+LSQ  N  N LYF EG GGL IWD R  K
Sbjct: 218 YTSCYDGTVRLMDAEKEIFDLVVDSDECIFALSQPTNEANCLYFAEGYGGLTIWDNRIGK 277

Query: 359 SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH 418
            ++ W+LH+ RINT+DFN  NP+I+ATS +DGTAC WDLR    DK  P+++ +H RA+ 
Sbjct: 278 RSSHWVLHKRRINTVDFNCENPHIVATSCSDGTACTWDLRYTDGDKLTPLRIFTHDRALQ 337

Query: 419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI 478
           SAYFSPSGSSLA TS D TIGI+SGVN E+ ++I+HNNQ    +S+FRA WGWDDS +FI
Sbjct: 338 SAYFSPSGSSLAITSMDTTIGIYSGVNLEDATLIYHNNQNSTRLSTFRAKWGWDDSYLFI 397

Query: 479 GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535
           GN  R V+V+S  +RR V TL+SPY+SA PCR   H ++VG L GAT GGQVY WTS
Sbjct: 398 GNTKRGVDVVSAVERRRVMTLESPYLSAFPCRLDTHSYEVGMLVGATNGGQVYTWTS 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084594|emb|CBI25615.3| unnamed protein product [Vitis vinifera]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 210/324 (64%), Positives = 261/324 (80%), Gaps = 2/324 (0%)

Query: 213 VGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED 272
           V   VD+GS+TL  ENIARIMPGRI  ++F PC D  M+VAG K G+I FW++D +++ D
Sbjct: 127 VEGSVDLGSMTLNAENIARIMPGRIMNLRFFPCIDSTMIVAGDKSGHIGFWDVDCEKERD 186

Query: 273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQ 332
            G++L++ H  P+SGI+ Q++  SKIFTSCY G I+LMDAEKEVFD +YSSE A+FSLSQ
Sbjct: 187 -GVFLYQPHKDPVSGILIQEFSQSKIFTSCYGGSIQLMDAEKEVFDKIYSSESAIFSLSQ 245

Query: 333 QPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391
           +PN VN LYFGEG GGLN+WD+R+ K  ++ W LHE RINTIDFN  NPNIMATSS+D T
Sbjct: 246 RPNYVNCLYFGEGNGGLNLWDMRAGKEPSSSWPLHEYRINTIDFNINNPNIMATSSSDAT 305

Query: 392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM 451
           ACIWDLR + +DKP+ +K +SH RAVHSAYFSPSGSSLATTS ++ +G+  GVNFE+ SM
Sbjct: 306 ACIWDLRKIDSDKPKTLKTVSHARAVHSAYFSPSGSSLATTSVENKVGLLGGVNFEDLSM 365

Query: 452 IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRF 511
           I+H N   RWISSFRAIWGWDDS +FIGNM R V++IS A R++V TLQS ++SAIPCRF
Sbjct: 366 IYHENHMCRWISSFRAIWGWDDSYLFIGNMKRGVDIISTACRKTVMTLQSAHMSAIPCRF 425

Query: 512 HAHPHQVGTLAGATGGGQVYVWTS 535
            AHP++VG LAGATGGGQ+Y+W S
Sbjct: 426 SAHPYKVGMLAGATGGGQIYMWKS 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548457|ref|XP_003542618.1| PREDICTED: WD repeat-containing protein 76-like [Glycine max]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 193/340 (56%), Positives = 251/340 (73%), Gaps = 5/340 (1%)

Query: 196 VGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS 255
           +G   L       EK +V + + + +L L PENIAR++PGRIT  +F P S V+M+  G+
Sbjct: 124 MGMAQLKAQYASVEKGKVEASLGLEALYLDPENIARVVPGRITSARFFPSSSVKMIAVGN 183

Query: 256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE 315
             GN+ FWN+   +     ++L+R H  PISGI+ Q +CLSKI+TSCYDG++RLMDAEKE
Sbjct: 184 TFGNVGFWNVGQSE-----VHLYRPHRAPISGILIQPHCLSKIYTSCYDGILRLMDAEKE 238

Query: 316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDF 375
           +FDLV+ S+ ++F+LSQ  N  N LY  EG GGL IWD R  K  + W+LHE+RINTIDF
Sbjct: 239 IFDLVFESDESIFALSQPTNETNCLYLAEGSGGLTIWDNRIGKRLSHWVLHESRINTIDF 298

Query: 376 NPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD 435
           N +NP+I ATSSTDGTAC WDLR    DK   ++  +HKR+V SAYFSPSG SLATTS D
Sbjct: 299 NCKNPHIAATSSTDGTACTWDLRYTDGDKLTALRTFTHKRSVQSAYFSPSGCSLATTSLD 358

Query: 436 DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS 495
           +TI I+SGVN E+ ++I+HNNQTGRW+S+FRA WGWDDS +F+GN+ R V+V+S  QR+ 
Sbjct: 359 NTIAIYSGVNMEDAAVINHNNQTGRWLSTFRAKWGWDDSYLFVGNLKRGVDVVSAVQRKM 418

Query: 496 VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535
           V TL+S ++SAIPCRF  H ++VG LAGAT GGQVY+WTS
Sbjct: 419 VMTLESQHMSAIPCRFDTHSYEVGMLAGATSGGQVYIWTS 458

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
TAIR|locus:2025762	516	DRS1 "AT1G80710" [Arabidopsis	0.944	0.980	0.516	4.4e-139
ASPGD|ASPL0000010993	525	AN3737 [Emericella nidulans (t	0.382	0.390	0.286	1.7e-30
ZFIN|ZDB-GENE-030131-4513	535	wdr76 "WD repeat domain 76" [D	0.479	0.480	0.309	4e-30
MGI|MGI:1926186	622	Wdr76 "WD repeat domain 76" [M	0.576	0.496	0.270	5.2e-29
SGD|S000002315	522	CMR1 "DNA-binding protein with	0.395	0.406	0.280	7.2e-17
CGD|CAL0000127	602	orf19.6907 [Candida albicans (	0.175	0.156	0.349	5.8e-15
UNIPROTKB|Q59S45	602	CaJ7.0141 "WD repeat-containin	0.175	0.156	0.349	5.8e-15
MGI|MGI:1355314	432	Ddb2 "damage specific DNA bind	0.546	0.678	0.236	2e-13
ZFIN|ZDB-GENE-050419-169	496	ddb2 "damage-specific DNA bind	0.416	0.449	0.270	2.2e-13
UNIPROTKB|Q0P593	415	WDR69 "Outer row dynein assemb	0.408	0.527	0.266	6.6e-13

TAIR|locus:2025762 DRS1 "AT1G80710" [Arabidopsis thaliana (taxid:3702)]

 Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
 Identities = 277/536 (51%), Positives = 359/536 (66%)

Query:     7 TEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKP-ETPIV 65
             TEYERKRLENI+RN+EMLAAL V AKAS L +A+KR R + K++K   +KK KP  TP V
Sbjct:     3 TEYERKRLENIRRNDEMLAALNVRAKASSLLSAAKRSRDDSKSFK---KKKPKPASTPTV 59

Query:    66 LRRSLRTQGMQPDSKGL----SDHSVAXXXXXXXXXXXXXXXAMTGPLSFKNAYVETGTF 121
             +R SLRT+G+ PDS GL    SD  +                 +  P+ F++AY   G++
Sbjct:    60 IRMSLRTRGLNPDSAGLPDGFSDFRMGSQITHNQPSPQKQSPRLLAPIPFESAYEGYGSY 119

Query:   122 VSLVDVFLSVAKKPHFGE-IKEEFNASLDYEMKPKVGVSVSVKEDGVKACKDENLGFVIK 180
               LVD  L +  K   G+ +K E     D    P V    S +   V   K+E       
Sbjct:   120 TQLVDTLLGIESKSCRGKLVKGEIGVVKDENESPMVRTRSSSRVSKVSVKKEEPED---- 175

Query:   181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQM 240
             D F+ +   K+  + V          K EKIE     D+  LTL+P+N+AR++PGRI  +
Sbjct:   176 DSFSDYVN-KEFSIPV----------KPEKIEF----DLDLLTLEPQNVARVVPGRIFVV 220

Query:   241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN-GIYLFRTHLGPISGIVTQQYCLSKIF 299
             +FLPC +V+MV AG KLGN+ FWNLD   +EDN GIYLF  H  P+S IV QQ  LS++ 
Sbjct:   221 QFLPCENVKMVAAGDKLGNVGFWNLDCGNEEDNDGIYLFTPHSAPVSSIVFQQNSLSRVI 280

Query:   300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
             +S YDGLIRLMD EK VFDLVYS++ A+FSLSQ+PN+  +LYFG+  G  N+WD+R+ KS
Sbjct:   281 SSSYDGLIRLMDVEKSVFDLVYSTDEAIFSLSQRPNDEQSLYFGQDYGVFNVWDLRAGKS 340

Query:   360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                W LHE RIN+IDFNP+NP++MATSSTDGTAC+WDLRSM   KP+ +  ++H RAVHS
Sbjct:   341 VFHWELHERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKTLSTVNHSRAVHS 400

Query:   420 AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG 479
             AYFSPSG SLATTS D+ IG+ SG NFENT MI+HNN T RWIS F+A+WGWDDS +++G
Sbjct:   401 AYFSPSGLSLATTSLDNYIGVLSGANFENTCMIYHNN-TSRWISKFKAVWGWDDSYIYVG 459

Query:   480 NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535
             N+++ ++VI+P  +R+V  L +P   AIPCR H HP+ VGTLAG+T GGQVYVWT+
Sbjct:   460 NLSKKIDVINPKLKRTVMELHNPLQRAIPCRIHCHPYNVGTLAGSTAGGQVYVWTT 515

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

ASPGD|ASPL0000010993 AN3737 [Emericella nidulans (taxid:162425)]

 Score = 226 (84.6 bits), Expect = 1.7e-30, Sum P(4) = 1.7e-30
 Identities = 67/234 (28%), Positives = 110/234 (47%)

Query:   264 NLDSQQDEDNG-----IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD 318
             N D + DED+      +   + H   IS +       + ++T+ YD  IR +D EK    
Sbjct:   226 NEDDEDDEDDDDPDPVLVTLKPHTRTISSMTVHPSKPTHLYTASYDSSIRELDLEKTSSV 285

Query:   319 LVY-----SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK--SATEWLLHEARIN 371
               Y     S +  +  L     + NT+Y+    G    +D+R+++  SAT W L E +I 
Sbjct:   286 EKYAPESTSDDVPISGLDMAAGDPNTIYWTTLDGAFGRYDMRTKRQSSATTWQLSEKKIG 345

Query:   372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT 431
                    +P+ +AT+S D T  +WD+R+++   P P+     + +V  A F+  G  +AT
Sbjct:   346 GFSLYQTHPHYVATASLDRTMRLWDIRNLSHTDPTPVGEHQSRLSVSHAAFNCVGQ-IAT 404

Query:   432 TSFDDTI--------GI--WS-GVNFENTSM-----IHHNNQTGRWISSFRAIW 469
             +S+DDT+        GI  W  G   + + M     + HN QTGRW++  R  W
Sbjct:   405 SSYDDTLKLYDFSSKGISSWKPGHILDESEMKPDTIVRHNCQTGRWVTILRPQW 458

GO:0008150 "biological_process" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-030131-4513 wdr76 "WD repeat domain 76" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 4.0e-30, Sum P(2) = 4.0e-30
 Identities = 84/271 (30%), Positives = 131/271 (48%)

Query:   222 LTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH 281
             L++    + +++  RI    F P S++ M  AG K G++  W  D++  +D G+  F  H
Sbjct:   235 LSIDDSRVVKVVKERICCAAFHPSSNLLMA-AGDKYGHLGLWRPDAEWGDD-GVVCFEPH 292

Query:   282 LGPISGIV-TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTL 340
                I+ +  T Q C   + T+ YDG  R MD EK VFD VY S  ++ S     ++ +TL
Sbjct:   293 SRAITALAFTSQPC--NLITASYDGSARSMDLEKAVFDEVYRSSSSLKSFDFLSSDCSTL 350

Query:   341 YFGEGQGGLNIWDVRSRKSATEW-LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS 399
              FGE  G + I D R+  S      +  A +  +  +P   +    + +     I+DLR 
Sbjct:   351 LFGEWNGDVAIVDRRTGNSCESLHAMTAAPLRGVHVHPVQQHYFLVAESSFVN-IYDLRH 409

Query:   400 MAT-DKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT----SMIH 453
             +   + P   ++  H R+  SA+FSP +GS + TT  DD I ++       +    + I 
Sbjct:   410 LKKRNSPAVCELYGHSRSTSSAFFSPLTGSRVLTTCMDDCIRVFDSSQIAGSIPALTSIR 469

Query:   454 HNNQTGRWISSFRAIWG-WDDSCVFIGNMTR 483
             HN QTGRW+S   A+W      C  IG M R
Sbjct:   470 HNMQTGRWLSRLCAVWDPKHQECFVIGTMDR 500

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1926186 Wdr76 "WD repeat domain 76" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 5.2e-29, Sum P(2) = 5.2e-29
 Identities = 89/329 (27%), Positives = 165/329 (50%)

Query:   218 DIGSLTLKPENIARIMPGRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIY 276
             ++  + +    + ++  G I+ +   P S+VR +V AG+K G I  W+L +QQ ED  +Y
Sbjct:   296 NLSGMVISEATVRKVTKGAISSVALHP-SEVRTLVAAGAKSGQIGLWDL-TQQSED-AMY 352

Query:   277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN 336
             +F  H   +S +       + + +  YDG +R  D    VF+ VY +E    S     N+
Sbjct:   353 VFYAHSRYVSCLSFSPTNPAHLLSLSYDGTLRCGDFSSAVFEEVYRNEGNSPSSFDFLND 412

Query:   337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTDGTACI 394
              ++L  G   G L++ D R+  ++ E   + +  +I T+  +P +     T+       +
Sbjct:   413 SSSLLVGHWDGHLSLVDRRTPGTSYEKFFNSSLEKIRTVHVHPLSRQYFVTAGLRDVH-V 471

Query:   395 WDLRSMATDKPEPMKVLS-HKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT--- 449
             +D R + +   +P+  L+ H +++ SAYFSP +G+ + TT  D  + ++   +  +    
Sbjct:   472 YDARFLKSRGSQPLISLTEHSKSIASAYFSPVTGNRVVTTCADCKLRVFDSSSISSQLPL 531

Query:   450 -SMIHHNNQTGRWISSFRAIWG-WDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPYIS 505
              S I HN  TGRW++ F+A+W    + C  +G+M   R VEV   + + +V +L    + 
Sbjct:   532 LSTIRHNTVTGRWLTRFQAVWDPKQEDCFIVGSMDHPRRVEVFHESGK-NVHSLWGECLV 590

Query:   506 AIPCRFHA-HPHQVGTLAGATGGGQVYVW 533
             ++ C   A HP +   LAG    G+++V+
Sbjct:   591 SV-CSLSAVHPTRY-ILAGGNSSGKLHVF 617

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

SGD|S000002315 CMR1 "DNA-binding protein with preference for UV-damaged DNA" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 177 (67.4 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
 Identities = 69/246 (28%), Positives = 110/246 (44%)

Query:   225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL------DSQQD--EDNGIY 276
             +P  I +I   RI+   F P  + ++++AG   G + FWN+      DS++D  E+  I 
Sbjct:   177 QPNEI-KITYERISATYFHPAMEKKLIIAGDTSGTVGFWNVRDEPLADSEEDRMEEPDIT 235

Query:   277 ---LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE----KEVFDLV--YSSEYAV 327
                LF  ++G I          SKI  + YDG IR +       +EV  L   Y     +
Sbjct:   236 RVKLFTKNVGRIDCFPADT---SKILLTSYDGSIRSVHLNNLQSEEVLTLKNEYDDSLGI 292

Query:   328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATS 386
                     N N L+     G    +D R +KS      L + +I ++  NP  P  +AT 
Sbjct:   293 SDCQFSYENPNVLFLTTLGGEFTTFDTRVKKSEYNLRRLADKKIGSMAINPMRPYEIATG 352

Query:   387 STDGTACIWDLRSMATDKPE-------PM-KVLS---HKRAVHSAYFSPSGSSLATTSFD 435
             S D T  IWD R++   KPE       P  +++S    + +V +  +SP+  +L    +D
Sbjct:   353 SLDRTLKIWDTRNLVK-KPEWSQYEDYPSHEIVSTYDSRLSVSAVSYSPTDGTLVCNGYD 411

Query:   436 DTIGIW 441
             DTI ++
Sbjct:   412 DTIRLF 417

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

CGD|CAL0000127 orf19.6907 [Candida albicans (taxid:5476)]

 Score = 136 (52.9 bits), Expect = 5.8e-15, Sum P(3) = 5.8e-15
 Identities = 37/106 (34%), Positives = 56/106 (52%)

Query:   231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ--------QDEDN---GIYLFR 279
             +I   RIT M F P +  R+VV G   GN+  W +D Q        +D+D+    I + +
Sbjct:   228 KICHNRITSMFFHPSTTNRIVVGGDTTGNVGIWLVDEQNNDTKEEEEDDDDDEPSISILQ 287

Query:   280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSE 324
              H   +S I+T  +   KI+TS YDG IR++D  K    +L+Y +E
Sbjct:   288 LHGRNVSKIMTPTFSPEKIYTSSYDGSIRVLDLNKLTSTELLYLNE 333

GO:0005737 "cytoplasm" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59S45 CaJ7.0141 "WD repeat-containing protein CaJ7.0141/CaO19.6907" [Candida albicans SC5314 (taxid:237561)]

 Score = 136 (52.9 bits), Expect = 5.8e-15, Sum P(3) = 5.8e-15
 Identities = 37/106 (34%), Positives = 56/106 (52%)

Query:   231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ--------QDEDN---GIYLFR 279
             +I   RIT M F P +  R+VV G   GN+  W +D Q        +D+D+    I + +
Sbjct:   228 KICHNRITSMFFHPSTTNRIVVGGDTTGNVGIWLVDEQNNDTKEEEEDDDDDEPSISILQ 287

Query:   280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSE 324
              H   +S I+T  +   KI+TS YDG IR++D  K    +L+Y +E
Sbjct:   288 LHGRNVSKIMTPTFSPEKIYTSSYDGSIRVLDLNKLTSTELLYLNE 333

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1355314 Ddb2 "damage specific DNA binding protein 2" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 2.0e-13, P = 2.0e-13
 Identities = 75/317 (23%), Positives = 140/317 (44%)

Query:   236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG-PISGIVTQQYC 294
             R T + + P     + V GSK G+I  WN   +   D  I+L     G  I+G+      
Sbjct:   113 RTTSLAWHPTHPSTLAV-GSKGGDIMIWNFGIK---DKPIFLKGIGAGGSITGLKFNHLN 168

Query:   295 LSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA-VFSLSQQPN-NVNTLYFGEGQGGLNIW 352
              ++ F S  +G  RL D +  +  +  SS    V+  S   +     +  G+  G + + 
Sbjct:   169 TNQFFASSMEGTTRLQDFKGNILRVYTSSNSCKVWFCSLDVSAKSRVVVTGDNMGHVILL 228

Query:   353 DVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS 412
                  K      +H+ ++  +  NP    ++AT+S D T  IWDLR +   K   +  L 
Sbjct:   229 STDG-KELWNLRMHKKKVAHVALNPCCDWLLATASIDQTVKIWDLRQIK-GKDSFLYSLP 286

Query:   413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-SMIHHNNQTGRWISSFRAIWGW 471
             H+  V++A FSP G+ L TT  ++ I ++S   +++  ++I H ++  + ++  +A W  
Sbjct:   287 HRHPVNAACFSPDGARLLTTDQNNEIRVYSASQWDSPLNLISHPHRHFQHLTPIKATWHS 346

Query:   472 DDSCVFIG-----NMT-------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG 519
               + + +G     N+        RT++V   +  + +  L  P  S I      +P  +G
Sbjct:   347 RHNLIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSGITSLNEFNP--MG 404

Query:   520 TLAGATGGGQVYVWTSD 536
                 +T G  + +W+ +
Sbjct:   405 DTLASTMGYHILIWSQE 421

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006290 "pyrimidine dimer repair" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0009411 "response to UV" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051865 "protein autoubiquitination" evidence=ISO

ZFIN|ZDB-GENE-050419-169 ddb2 "damage-specific DNA binding protein 2" [Danio rerio (taxid:7955)]

 Score = 205 (77.2 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 66/244 (27%), Positives = 118/244 (48%)

Query:   236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP---ISGIVTQQ 292
             R+T +++ P     + V GSK G+I  W+ D           F   +GP   I+G+   Q
Sbjct:   115 RVTSLEWHPTHPTTVAV-GSKGGDIILWDYDVLNKTS-----FIQGMGPGDAITGMKFNQ 168

Query:   293 YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEGQG 347
             +  +++F S   G   L D    V  +   ++     Y    +S     + T   G+  G
Sbjct:   169 FNTNQLFVSSIWGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLAT---GDSTG 225

Query:   348 GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
              L +  +   +   E  LH+A++   +FNPR   +MATSS D T  +WDLR++  DK   
Sbjct:   226 RLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-DKNSY 283

Query:   408 MKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFENTS-MIHHNNQTGRWISSF 465
             +  + H++ V++AYF+P+ S+ L TT   + I ++S  ++     +I H ++  + ++  
Sbjct:   284 IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 343

Query:   466 RAIW 469
             +A W
Sbjct:   344 KATW 347

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 6.6e-13, P = 6.6e-13
 Identities = 63/236 (26%), Positives = 107/236 (45%)

Query:   269 QDEDNGIYLF---RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD-AEKEVFDLVYSSE 324
             Q  ++  YLF   R H+ P++ +   +   S   T  YD   +L D A  E    +    
Sbjct:    76 QHSNHKFYLFKVLRAHILPLTNVALNKSG-SCFITGSYDRTCKLWDTASGEELHTLEGHR 134

Query:   325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA 384
               V++++      + +  G       +W V + K    +  H A I  + FNP++  ++A
Sbjct:   135 NVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQS-TLVA 193

Query:   385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV 444
             T S D TA +WD++S      E   +  H   + S  F+ SG+ + T SFD T+ +W   
Sbjct:   194 TGSMDTTAKLWDIQS----GEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEAD 249

Query:   445 NFENT-SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL 499
                   ++I H  +    ISS  A++ WD S +  G+M +T ++      + VATL
Sbjct:   250 TGRKVYTLIGHCAE----ISS--AVFNWDCSLILTGSMDKTCKLWDAVNGKCVATL 299

GO:0005929 "cilium" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00181018 hypothetical protein (513 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	536
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (252), Expect = 1e-23
 Identities = 73/309 (23%), Positives = 123/309 (39%), Gaps = 49/309 (15%)

Query: 234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY 293
            G +T + F P  D +++  GS  G I  W+L++ +         + H GP+  +     
Sbjct: 9   TGGVTCVAFSP--DGKLLATGSGDGTIKVWDLETGELL----RTLKGHTGPVRDVAASAD 62

Query: 294 CLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYAVFSLSQQPNNVNTLYFGEGQGGLNIW 352
             + + +   D  IRL D E        +     V S++  P+    L        + +W
Sbjct: 63  -GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVW 120

Query: 353 DVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS 412
           DV + K  T    H   +N++ F+P +   +A+SS DGT  +WDLR+      + +  L+
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTG-----KCVATLT 174

Query: 413 -HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW 471
            H   V+S  FSP G  L ++S D TI +W             +  TG+ + + R     
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-------------DLSTGKCLGTLRGHENG 221

Query: 472 DDSCVFI--------GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG 523
            +S  F         G+   T+ V        V TL              H + V +LA 
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS------------GHTNSVTSLAW 269

Query: 524 ATGGGQVYV 532
           +  G ++  
Sbjct: 270 SPDGKRLAS 278

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 96.2 bits (240), Expect = 3e-22
 Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 22/213 (10%)

Query: 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIV---TQ 291
             ++ + F P  D R++ + S+   I  W++++       +   R H   ++ +      
Sbjct: 94  SYVSSVAFSP--DGRILSSSSRDKTIKVWDVET----GKCLTTLRGHTDWVNSVAFSPDG 147

Query: 292 QYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY-AVFSLSQQPNNVNTLYFGEGQGGLN 350
            +    + +S  DG I+L D          +     V S++  P+    L      G + 
Sbjct: 148 TF----VASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIK 202

Query: 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410
           +WD+ + K       HE  +N++ F+P +  ++A+ S DGT  +WDLR+      E ++ 
Sbjct: 203 LWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRT-----GECVQT 256

Query: 411 LS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442
           LS H  +V S  +SP G  LA+ S D TI IW 
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 78.2 bits (191), Expect = 2e-15
 Identities = 65/303 (21%), Positives = 122/303 (40%), Gaps = 16/303 (5%)

Query: 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC 294
             IT + F P  ++  +++GS  G I  W+LD+ +     +     H   +S +      
Sbjct: 66  DSITSIAFSPDGEL--LLSGSSDGTIKLWDLDNGEKLIKSLEGL--HDSSVSKLALSSPD 121

Query: 295 LSKIFTSC--YDGLIRLMDAEKEVFDLVYSS--EYAVFSLSQQPNNVNTLYFGEGQGGLN 350
            + I  +    DG ++L D       +        +V SL+  P+           G + 
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410
           +WD+R+ K  +    H   ++++ F+P    ++A+ S+DGT  +WDL    T K     +
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS---TGKLLRSTL 238

Query: 411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470
             H  +V S+ FSP GS LA+ S D TI +W   +  +       +     + S    + 
Sbjct: 239 SGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS--SSVLS--VAFS 293

Query: 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 530
            D   +  G+   TV +      + +++L               P     ++G +  G +
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353

Query: 531 YVW 533
            +W
Sbjct: 354 RLW 356

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.8 bits (177), Expect = 1e-13
 Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 28/282 (9%)

Query: 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLS 296
           ++ + F P     ++ +GS  G I  W      D   G  L  T  G    +V+     S
Sbjct: 201 VSSLAFSPDGG-LLIASGSSDGTIRLW------DLSTGKLLRSTLSGHSDSVVS---SFS 250

Query: 297 K----IFTSCYDGLIRLMDAE--KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLN 350
                + +   DG IRL D      +   +     +V S++  P+    L  G   G + 
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVR 309

Query: 351 IWDVRSRKSATEW--LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408
           +WD+ + K  +      HE  ++++ F+P    +++  S DGT  +WDLR+      +P+
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTG-----KPL 364

Query: 409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRA 467
           K L     V S  FSP G  +++ S D T+ +W         ++  H ++      S   
Sbjct: 365 KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 468 IW---GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISA 506
                G  D+ + + ++  +++ +S +    V   +S  +S 
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 35/183 (19%)

Query: 362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSA 420
               H   +  + F+P +  ++AT S DGT  +WDL +      E ++ L  H   V   
Sbjct: 4   TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETG-----ELLRTLKGHTGPVRDV 57

Query: 421 YFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HN--------NQTGRWISSFRAIWGW 471
             S  G+ LA+ S D TI +W     E    +  H         +  GR +SS       
Sbjct: 58  AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS-----SS 112

Query: 472 DDSCVFIGNMTRTVEVIS-PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV 530
            D  + + ++     + +       V +            F         +A ++  G +
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNS----------VAFS-PDGTF--VASSSQDGTI 159

Query: 531 YVW 533
            +W
Sbjct: 160 KLW 162

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWD 396
           H   + ++ F+P + N++A+ S DGT  +WD
Sbjct: 10  HTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           +G + +WDV   +  TE   HE R+ +ID++  +P ++A+ S DG+  +W +    +   
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--- 610

Query: 406 EPMKVLSHKRAVHSAYF-SPSGSSLATTSFDDTI 438
             +  +  K  +    F S SG SLA  S D  +
Sbjct: 611 --IGTIKTKANICCVQFPSESGRSLAFGSADHKV 642

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWD 396
           H   + ++ F+P     +A+ S DGT  +WD
Sbjct: 11  HTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 404 KPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442
             E +K L  H   V S  FSP G  LA+ S D TI +W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442
           H   V S  FSP G+ LA+ S D T+ +W 
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	536
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG4328	498	consensus WD40 protein [Function unknown]	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.98
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG1273	405	consensus WD40 repeat protein [General function pr	99.95
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG4328	498	consensus WD40 protein [Function unknown]	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.93
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.93
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG1188	376	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.91
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG0267	825	consensus Microtubule severing protein katanin p80	99.9
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.9
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.9
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.88
KOG4227	609	consensus WD40 repeat protein [General function pr	99.88
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.87
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1334	559	consensus WD40 repeat protein [General function pr	99.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.83
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.82
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.82
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.75
PRK01742	429	tolB translocation protein TolB; Provisional	99.75
KOG1963	792	consensus WD40 repeat protein [General function pr	99.75
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG1963	792	consensus WD40 repeat protein [General function pr	99.71
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.71
KOG2139	445	consensus WD40 repeat protein [General function pr	99.71
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
PRK01742	429	tolB translocation protein TolB; Provisional	99.69
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.68
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG0649	325	consensus WD40 repeat protein [General function pr	99.68
KOG2139	445	consensus WD40 repeat protein [General function pr	99.68
KOG1310	758	consensus WD40 repeat protein [General function pr	99.67
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.67
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.66
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG2321	703	consensus WD40 repeat protein [General function pr	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.63
PRK04922	433	tolB translocation protein TolB; Provisional	99.63
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.63
KOG2315	566	consensus Predicted translation initiation factor	99.62
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
PRK05137	435	tolB translocation protein TolB; Provisional	99.61
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.61
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.53
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.53
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.49
PRK04792	448	tolB translocation protein TolB; Provisional	99.48
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.47
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.45
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.45
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.4
PRK04792	448	tolB translocation protein TolB; Provisional	99.39
KOG2314	698	consensus Translation initiation factor 3, subunit	99.37
KOG2315	566	consensus Predicted translation initiation factor	99.35
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.34
KOG4547	541	consensus WD40 repeat-containing protein [General	99.34
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.33
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.31
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.31
PRK01029	428	tolB translocation protein TolB; Provisional	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.3
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.3
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.29
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.27
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.26
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.25
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.25
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.25
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.24
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.23
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.22
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.21
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.2
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.14
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.08
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.08
KOG2314	698	consensus Translation initiation factor 3, subunit	99.08
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.07
COG4946	668	Uncharacterized protein related to the periplasmic	99.07
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.05
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.05
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.0
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.0
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.98
PRK04043	419	tolB translocation protein TolB; Provisional	98.94
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.9
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.9
KOG2695	425	consensus WD40 repeat protein [General function pr	98.89
KOG2695	425	consensus WD40 repeat protein [General function pr	98.89
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
COG4946	668	Uncharacterized protein related to the periplasmic	98.86
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.85
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.85
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.84
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.82
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.82
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.79
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.74
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.74
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.6
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.6
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.59
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.59
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.58
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.56
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.52
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.51
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.51
PRK02888	635	nitrous-oxide reductase; Validated	98.5
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.5
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.49
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.45
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.45
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.38
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.33
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.32
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.31
KOG3621	726	consensus WD40 repeat-containing protein [General	98.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.27
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.26
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.22
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.21
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.18
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.17
COG3391	381	Uncharacterized conserved protein [Function unknow	98.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.1
KOG3621	726	consensus WD40 repeat-containing protein [General	98.1
PF14727	418	PHTB1_N: PTHB1 N-terminus	98.07
COG3391	381	Uncharacterized conserved protein [Function unknow	97.99
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.98
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.94
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.92
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.89
PRK02888	635	nitrous-oxide reductase; Validated	97.88
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.84
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.83
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.82
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.81
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.76
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.74
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.69
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.68
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.64
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.64
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.55
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.53
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.51
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.46
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.46
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.45
KOG2395	644	consensus Protein involved in vacuole import and d	97.33
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.33
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.28
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.2
COG5276	370	Uncharacterized conserved protein [Function unknow	97.12
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.1
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.09
PHA02713	557	hypothetical protein; Provisional	97.09
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.07
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.03
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.96
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.94
PHA02713	557	hypothetical protein; Provisional	96.92
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.89
KOG2444	238	consensus WD40 repeat protein [General function pr	96.88
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.8
KOG2395	644	consensus Protein involved in vacuole import and d	96.77
PRK13616	591	lipoprotein LpqB; Provisional	96.69
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.67
KOG2444	238	consensus WD40 repeat protein [General function pr	96.66
PRK13616	591	lipoprotein LpqB; Provisional	96.66
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.58
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.58
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.45
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.43
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.33
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.32
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.24
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.21
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.08
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.03
PHA03098	534	kelch-like protein; Provisional	95.95
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.9
COG5276	370	Uncharacterized conserved protein [Function unknow	95.82
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.8
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.79
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.7
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.66
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.63
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.5
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.39
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.37
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.37
PHA03098	534	kelch-like protein; Provisional	95.31
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.3
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.18
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.16
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.88
PHA02790	480	Kelch-like protein; Provisional	94.82
PRK10115	686	protease 2; Provisional	94.69
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	94.58
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.55
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.37
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.23
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.09
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.06
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.0
PHA02790	480	Kelch-like protein; Provisional	93.98
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.68
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.28
PLN02193	470	nitrile-specifier protein	93.2
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.18
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.01
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.91
PLN02153	341	epithiospecifier protein	92.88
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.77
COG5167	776	VID27 Protein involved in vacuole import and degra	92.75
COG5167	776	VID27 Protein involved in vacuole import and degra	92.72
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.48
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.47
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.46
PRK13684	334	Ycf48-like protein; Provisional	92.42
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.31
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.2
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	92.09
PRK10115	686	protease 2; Provisional	91.84
PRK13684	334	Ycf48-like protein; Provisional	91.32
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.27
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.17
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.89
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	90.63
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.43
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.01
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.94
KOG2247	615	consensus WD40 repeat-containing protein [General	89.87
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.83
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	89.5
COG4590	733	ABC-type uncharacterized transport system, permeas	89.48
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.26
PLN02193	470	nitrile-specifier protein	89.13
KOG2377	657	consensus Uncharacterized conserved protein [Funct	89.08
KOG2247	615	consensus WD40 repeat-containing protein [General	89.07
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.64
PF12768	281	Rax2: Cortical protein marker for cell polarity	88.58
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.27
PLN02153	341	epithiospecifier protein	88.08
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	87.79
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	87.59
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.54
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	87.31
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.11
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.32
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.01
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	85.79
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	85.53
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	85.22
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	84.84
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	84.76
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.67
PF11239	82	DUF3040: Protein of unknown function (DUF3040); In	84.37
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	84.26
KOG2714	465	consensus SETA binding protein SB1 and related pro	84.24
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	83.65
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.44
KOG3616	1636	consensus Selective LIM binding factor [Transcript	83.09
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.08
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	82.75
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	82.37
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	82.16
KOG2006	1023	consensus WD40 repeat protein [General function pr	82.05
COG3292	671	Predicted periplasmic ligand-binding sensor domain	81.43
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	80.95
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.33
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	80.32

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-50  Score=367.37  Aligned_cols=329  Identities=17%  Similarity=0.243  Sum_probs=290.8

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      ..+.||...|-|+.|+|+|+.++          +++-|.+++|||+..+ |....++|...|.|++|+|  ||+.||+|+
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~----------tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP--Dgk~iASG~  176 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLV----------TGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP--DGKKIASGS  176 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEE----------ecCCCceEEeeccCCCCcceeecCCccEEEEEEECC--Ccchhhccc
Confidence            45789999999999999999999          5578889999998664 5567799999999999999  999999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC----CCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEE
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC----LSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSL  330 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l  330 (536)
                      .||+|++||..++   ......+.+|...|++++|.|-.    ..+|++++.||.|+|||+..+.+. .+.+|..+|+|+
T Consensus       177 ~dg~I~lwdpktg---~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv  253 (480)
T KOG0271|consen  177 KDGSIRLWDPKTG---QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV  253 (480)
T ss_pred             cCCeEEEecCCCC---CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE
Confidence            9999999999885   45667899999999999998732    268999999999999999987655 566899999999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEe-----------cCC--------------------
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFN-----------PRN--------------------  379 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~-----------p~~--------------------  379 (536)
                      +|--++  ++++|+.|++|++|+...|.+.+.+++|...|+.++++           |.+                    
T Consensus       254 rwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~  331 (480)
T KOG0271|consen  254 RWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV  331 (480)
T ss_pred             EEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence            998664  99999999999999999999999999999999999987           212                    


Q ss_pred             ----CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-c
Q 009380          380 ----PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-H  454 (536)
Q Consensus       380 ----~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~  454 (536)
                          +..|++|+.|.++.+|+....+   ..+..+.+|..-|+++.||||+++|++++.|..|++||.++++.+..++ |
T Consensus       332 ~~~~~erlVSgsDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH  408 (480)
T KOG0271|consen  332 LKDSGERLVSGSDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH  408 (480)
T ss_pred             hccCcceeEEecCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence                2359999999999999977643   2445667999999999999999999999999999999999999998885 3


Q ss_pred             cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          455 NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      ..      .++.++|+.|.++|++|+.|.+++||++.+.+....|.+|...+.  .+.|+| ||..+++|+.|..+++|.
T Consensus       409 v~------~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf--~vDwsp-DG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  409 VA------AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF--AVDWSP-DGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cc------eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--EEEecC-CCceeecCCCceEEEeec
Confidence            22      456689999999999999999999999999999999998777665  688999 789999999999999995

>KOG4328 consensus WD40 protein [Function unknown]

Probab=100.00  E-value=4.5e-50  Score=374.48  Aligned_cols=311  Identities=35%  Similarity=0.620  Sum_probs=275.4

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      ..+..+.+.|.++|++++|||+++.+++|+|++-|+|.+||+.+.+.....+..+..|+++|.+|.|+|.+...+++.|+
T Consensus       176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy  255 (498)
T KOG4328|consen  176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY  255 (498)
T ss_pred             ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence            34566789999999999999987778999999999999999975554567888999999999999999999899999999


Q ss_pred             CCeEEEEECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCC
Q 009380          304 DGLIRLMDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~  379 (536)
                      ||+|++-|+++.....++..   ...+.++.|+.+. ..++++..=|.+.+||++++.. ...+..|...|++|+++|..
T Consensus       256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC  334 (498)
T ss_pred             CceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence            99999999999877666544   3467788888887 4566666666999999998766 67778899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC----CCCCcceEEecc
Q 009380          380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG----VNFENTSMIHHN  455 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~----~~~~~~~~~~~~  455 (536)
                      +++|+|++.|++++|||+|....+....+....|...|.+++|||++-.|+|.+.|..|+|||.    ....+..++.|+
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn  414 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHN  414 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeecc
Confidence            9999999999999999999987554345777799999999999998777999999999999998    566788999999


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +.+++|++.+++.|.|+..+|++|..-..|.|||...++.+..+..+....+++...|||.+..+++.++..|.|+||.-
T Consensus       415 ~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  415 NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence            99999999999999999999999999999999999999989999888888888999999988568888899999999964

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.6e-44  Score=325.16  Aligned_cols=287  Identities=16%  Similarity=0.229  Sum_probs=247.5

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      ....+|.+.|.|+.|+|  +|..|++|+.|.++++||+.+    ..+.++.++|...|.|++|+||+ ..|++|+.||+|
T Consensus       109 sS~~GH~e~Vl~~~fsp--~g~~l~tGsGD~TvR~WD~~T----eTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I  181 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSP--TGSRLVTGSGDTTVRLWDLDT----ETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSI  181 (480)
T ss_pred             cccCCCCCcEEEEEecC--CCceEEecCCCceEEeeccCC----CCcceeecCCccEEEEEEECCCc-chhhccccCCeE
Confidence            34578999999999999  999999999999999999998    78899999999999999999999 999999999999


Q ss_pred             EEEECCCCeEE--EeecCCCceeEEEecCCC----CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          308 RLMDAEKEVFD--LVYSSEYAVFSLSQQPNN----VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       308 ~vwd~~~~~~~--~~~~~~~~i~~l~~~~~~----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      ++||..++...  .+.+|...|++++|.|-.    ..+|++++.||.|+|||+..+.++..+.+|..+|+||.|-.+  .
T Consensus       182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~--g  259 (480)
T KOG0271|consen  182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE--G  259 (480)
T ss_pred             EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC--c
Confidence            99999887653  566899999999997732    258999999999999999999999999999999999999854  5


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc-----------cCCC-----------------------
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS-----------PSGS-----------------------  427 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s-----------p~g~-----------------------  427 (536)
                      ++++||.|++|++|+...+.    .+..+.+|...|+.++.+           |.+.                       
T Consensus       260 liySgS~DrtIkvw~a~dG~----~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~  335 (480)
T KOG0271|consen  260 LIYSGSQDRTIKVWRALDGK----LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS  335 (480)
T ss_pred             eEEecCCCceEEEEEccchh----HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence            99999999999999998864    566677999999999877           3333                       


Q ss_pred             --eEEEEeCCCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCce
Q 009380          428 --SLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYI  504 (536)
Q Consensus       428 --~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~  504 (536)
                        .|++|+.|.++.+|+....+ ++...     +++...+..+.||||++|+++++.|..|++|+..+|+.+.+|.+|-.
T Consensus       336 ~erlVSgsDd~tlflW~p~~~kkpi~rm-----tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~  410 (480)
T KOG0271|consen  336 GERLVSGSDDFTLFLWNPFKSKKPITRM-----TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA  410 (480)
T ss_pred             cceeEEecCCceEEEecccccccchhhh-----hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence              49999999999999975443 33222     22222334488999999999999999999999999999999998766


Q ss_pred             eeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          505 SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       505 ~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .+.  .++|+. |.++|++|+.|.+|+||++
T Consensus       411 ~VY--qvawsa-DsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  411 AVY--QVAWSA-DSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             eeE--EEEecc-CccEEEEcCCCceEEEEEe
Confidence            655  567766 5689999999999999997

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.1e-43  Score=328.56  Aligned_cols=282  Identities=20%  Similarity=0.272  Sum_probs=253.9

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC-CCCEEEEEECCCeEEEEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY-CLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~I~vwd  311 (536)
                      -..+|..+.|++  +++.|+||+.+|.++||+..+    ...+..|.+|...|.++.|+|. ....|+||+.||++++|+
T Consensus       174 d~rPis~~~fS~--ds~~laT~swsG~~kvW~~~~----~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  174 DTRPISGCSFSR--DSKHLATGSWSGLVKVWSVPQ----CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             CCCcceeeEeec--CCCeEEEeecCCceeEeecCC----cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            467899999999  999999999999999999998    6889999999999999999998 347899999999999999


Q ss_pred             CCCCe-EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          312 AEKEV-FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       312 ~~~~~-~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      +.+.. +..+.+|...|..++|+|+| .+|.+++.|.+-++||++++..+....+|...|.+++|+||| .+++||+.|.
T Consensus       248 ~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG-SL~~tGGlD~  325 (459)
T KOG0272|consen  248 LSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG-SLAATGGLDS  325 (459)
T ss_pred             cCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhcccccccceeEecCCC-ceeeccCccc
Confidence            99854 45566889999999999999 899999999999999999999998889999999999999998 6999999999


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG  470 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  470 (536)
                      .-+|||+|++.    .++.+.+|...|.++.|+|+|..|+||+.|++++|||++....+.++..+..   .++  .+.|+
T Consensus       326 ~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n---lVS--~Vk~~  396 (459)
T KOG0272|consen  326 LGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN---LVS--QVKYS  396 (459)
T ss_pred             hhheeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc---hhh--heEec
Confidence            99999999975    6677779999999999999999999999999999999998888777743221   223  36789


Q ss_pred             C-CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          471 W-DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       471 ~-~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      | .|.+|++++.|++++||...+..++..+.+|...++.+  ..+| ++.++++++.|.++++|.
T Consensus       397 p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~--Dis~-d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  397 PQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL--DISP-DSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE--Eecc-CCceEEEeccCceeeecc
Confidence            8 68899999999999999999999999999998888754  5555 679999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-43  Score=327.24  Aligned_cols=293  Identities=21%  Similarity=0.275  Sum_probs=260.5

Q ss_pred             cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCc
Q 009380          170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDV  248 (536)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~  248 (536)
                      .+...+..--.|....+..|.|+.|++.++          +++.+|.+++|+... .....+++|.+.|.++.|+|..++
T Consensus       162 ~~~~~l~~SQ~gd~rPis~~~fS~ds~~la----------T~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  162 LQSLELVCSQVGDTRPISGCSFSRDSKHLA----------TGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             hhhhhhhhhhccCCCcceeeEeecCCCeEE----------EeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc
Confidence            344555555567788999999999999999          568999999999743 345567999999999999995346


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCce
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAV  327 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i  327 (536)
                      .-||+|+.||+|++|++++    ...+..+.+|...|..++|+|+| ++|+|+++|.+-++||++++.. ....+|...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~----e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQ----ETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCC----CcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhHhhccccccc
Confidence            7899999999999999997    57889999999999999999999 9999999999999999998754 4556899999


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      .+++|+++| .++++|+.|..-+|||+|++.++..+.+|...|.+|+|+|.| +.|||||.|++++|||++.-+    ..
T Consensus       307 ~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~----~l  380 (459)
T KOG0272|consen  307 FSIAFQPDG-SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS----EL  380 (459)
T ss_pred             ceeEecCCC-ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc----cc
Confidence            999999999 899999999999999999999999999999999999999977 899999999999999999843    56


Q ss_pred             ceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          408 MKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       408 ~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      ..+.+|..-|+.+.|+| .|.+|+|+++|++++||...++.++..+. |..      .++.+..+++++++++++.|+++
T Consensus       381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~------kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG------KVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc------ceEEEEeccCCceEEEeccCcee
Confidence            67779999999999999 88999999999999999999999998874 332      34457789999999999999999


Q ss_pred             EEEc
Q 009380          486 EVIS  489 (536)
Q Consensus       486 ~v~d  489 (536)
                      ++|.
T Consensus       455 KLW~  458 (459)
T KOG0272|consen  455 KLWR  458 (459)
T ss_pred             eecc
Confidence            9995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-40  Score=291.75  Aligned_cols=292  Identities=16%  Similarity=0.212  Sum_probs=260.4

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      .....++++|.+.|+++.|++  |.++|++++.||.+.|||.-+    ...++.+.-....|..++|+|.+ +++++|+.
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~--Dsr~ivSaSqDGklIvWDs~T----tnK~haipl~s~WVMtCA~sPSg-~~VAcGGL  117 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWST--DSRRIVSASQDGKLIVWDSFT----TNKVHAIPLPSSWVMTCAYSPSG-NFVACGGL  117 (343)
T ss_pred             eeeEEEecccccceeeeEecC--CcCeEEeeccCCeEEEEEccc----ccceeEEecCceeEEEEEECCCC-CeEEecCc
Confidence            445678999999999999999  999999999999999999988    56677777788999999999999 99999999


Q ss_pred             CCeEEEEECCCC-------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEe
Q 009380          304 DGLIRLMDAEKE-------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFN  376 (536)
Q Consensus       304 dg~I~vwd~~~~-------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~  376 (536)
                      |+...||++.+.       ....+.+|.+.+.|+.|.++  +.|++++.|.+..+||+++++.+..|.+|.+.|.++++.
T Consensus       118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~  195 (343)
T KOG0286|consen  118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLS  195 (343)
T ss_pred             CceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecC
Confidence            999999999853       23446689999999999986  589999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380          377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  456 (536)
                      |..++.|++|+.|+..++||+|.+.    ....+.+|...|+++.|.|+|.-|++|+.|++.++||++..+.+..+.+..
T Consensus       196 p~~~ntFvSg~cD~~aklWD~R~~~----c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~  271 (343)
T KOG0286|consen  196 PSDGNTFVSGGCDKSAKLWDVRSGQ----CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDS  271 (343)
T ss_pred             CCCCCeEEecccccceeeeeccCcc----eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCc
Confidence            9666999999999999999999964    566777999999999999999999999999999999999998888887654


Q ss_pred             CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      ... .++  .+.||..|++|++|..|..+.|||.-.++.+..|.+|...+.  .+..+| ||..|++|+.|..|+||.
T Consensus       272 ~~~-git--Sv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvS--cl~~s~-DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  272 IIC-GIT--SVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVS--CLGVSP-DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccC-Cce--eEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeE--EEEECC-CCcEEEecchhHheeecC
Confidence            433 233  378999999999999999999999999999999998776665  456667 789999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.4e-39  Score=285.76  Aligned_cols=292  Identities=21%  Similarity=0.203  Sum_probs=250.6

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      +..+.+|+||.+.|.++.+++|.+.+.          +.+.||.+-+||.... ....+..-...|..++|+|  +|+++
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~iv----------SaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP--Sg~~V  112 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIV----------SASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP--SGNFV  112 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEE----------eeccCCeEEEEEcccccceeEEecCceeEEEEEECC--CCCeE
Confidence            455689999999999999999999998          5589999999996332 2233344578999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCcee
Q 009380          252 VAGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVF  328 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~  328 (536)
                      |+|+-|+...||++.+...  .......+.+|++.+.|+.|.+|  ..|+|+|.|.+..+||+++++....+ +|.+.|.
T Consensus       113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~  190 (343)
T KOG0286|consen  113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM  190 (343)
T ss_pred             EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEE
Confidence            9999999999999986422  23455679999999999999986  69999999999999999999766554 7999999


Q ss_pred             EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380          329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM  408 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~  408 (536)
                      +++++|..++.+++|+-|+..++||+|.+.++++|.+|+..|++|+|+|+| .-|++|+.|+++++||+|...     .+
T Consensus       191 slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyDlRaD~-----~~  264 (343)
T KOG0286|consen  191 SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYDLRADQ-----EL  264 (343)
T ss_pred             EEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCC-CeeeecCCCceeEEEeecCCc-----EE
Confidence            999999666999999999999999999999999999999999999999988 799999999999999999853     22


Q ss_pred             eee---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          409 KVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       409 ~~~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      ..+   .-..+|++++||..|++|++|..|.++.+||.-.++....+..   +...+++  +..+|||..|++|+.|..+
T Consensus       265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G---HeNRvSc--l~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG---HENRVSC--LGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec---cCCeeEE--EEECCCCcEEEecchhHhe
Confidence            333   3456899999999999999999999999999988877777642   2224555  4469999999999999999


Q ss_pred             EEEc
Q 009380          486 EVIS  489 (536)
Q Consensus       486 ~v~d  489 (536)
                      +||.
T Consensus       340 riW~  343 (343)
T KOG0286|consen  340 RIWA  343 (343)
T ss_pred             eecC
Confidence            9994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-38  Score=279.19  Aligned_cols=297  Identities=16%  Similarity=0.201  Sum_probs=254.2

Q ss_pred             cccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC------ccccccccCCceEEEEEEec
Q 009380          172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK------PENIARIMPGRITQMKFLPC  245 (536)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~------~~~~~~~~~~~I~~v~~~p~  245 (536)
                      .+.++-++++|.++|..+...+.+.-+..         ..++|..+.+|++..+      +...+++|...|..+..++ 
T Consensus         4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~---------sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-   73 (315)
T KOG0279|consen    4 QLVLRGTLEGHTDWVTALAIKIKNSDILV---------SASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-   73 (315)
T ss_pred             hheeeeeecCCCceEEEEEeecCCCceEE---------EcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-
Confidence            35677889999999999999888654442         4688889999998543      2345688999999999999 


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--
Q 009380          246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS--  323 (536)
Q Consensus       246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~--  323 (536)
                       ||++.++++.|+.+++||+.+    ++....|.+|..-|.+++|++++ .++++|+.|.+|.+|++..+....+..+  
T Consensus        74 -dg~~alS~swD~~lrlWDl~~----g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~~~~~~  147 (315)
T KOG0279|consen   74 -DGNFALSASWDGTLRLWDLAT----GESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTIHEDSH  147 (315)
T ss_pred             -CCceEEeccccceEEEEEecC----CcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEEecCCC
Confidence             999999999999999999998    78889999999999999999998 9999999999999999988766555544  


Q ss_pred             CCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          324 EYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       324 ~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                      ..-|.|++|+|+. .-+|++++.|++|++||+++.+....+.+|.+.++.+.++||| .+.++|+.||.+.+||++.++ 
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k-  225 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK-  225 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc-
Confidence            6889999999984 3689999999999999999999999999999999999999998 799999999999999999864 


Q ss_pred             CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC----CCCceeeeeEEEEcCCCCEEEE
Q 009380          403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN----QTGRWISSFRAIWGWDDSCVFI  478 (536)
Q Consensus       403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~g~~l~~  478 (536)
                          .+....|...|.+++|+|+...|+.+. +..|+|||+.+...+..+....    .......++.++|+++|..|++
T Consensus       226 ----~lysl~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~  300 (315)
T KOG0279|consen  226 ----NLYSLEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA  300 (315)
T ss_pred             ----eeEeccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence                466778999999999999876555544 5569999999888776664221    1122345667899999999999


Q ss_pred             EcCCCcEEEEcCC
Q 009380          479 GNMTRTVEVISPA  491 (536)
Q Consensus       479 gs~dg~I~v~d~~  491 (536)
                      |-.|+.|++|.+.
T Consensus       301 g~td~~irv~qv~  313 (315)
T KOG0279|consen  301 GYTDNVIRVWQVA  313 (315)
T ss_pred             eecCCcEEEEEee
Confidence            9999999999764

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-38  Score=283.60  Aligned_cols=296  Identities=20%  Similarity=0.321  Sum_probs=255.6

Q ss_pred             ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      |...+.+|.+.|+.+.|+|  +|.+||+|+.|..|.+|++...   .+....+++|++.|..+.|.+++ +.|++++.|.
T Consensus        39 p~m~l~gh~geI~~~~F~P--~gs~~aSgG~Dr~I~LWnv~gd---ceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk  112 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHP--DGSCFASGGSDRAIVLWNVYGD---CENFWVLKGHSGAVMELHGMRDG-SHILSCGTDK  112 (338)
T ss_pred             hhhhcCCCcceEEEEEECC--CCCeEeecCCcceEEEEecccc---ccceeeeccccceeEeeeeccCC-CEEEEecCCc
Confidence            4556788999999999999  9999999999999999998753   45667788999999999999999 9999999999


Q ss_pred             eEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          306 LIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      +|+.||+++|+....+ .|..-+.+++-...|+.++.+|+.||++++||+|+...++++. ..-.++++.|..++ ..+.
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s-~qv~  190 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTS-DQVI  190 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccc-ccee
Confidence            9999999999876544 5778888888777788899999999999999999998888875 56789999999877 5788


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE---EeccCCCCce
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM---IHHNNQTGRW  461 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~  461 (536)
                      +|+-|+.|++||++...    ....+.+|...|+++..+|+|.++.+-+.|.++++||++-..+...   +......+-.
T Consensus       191 sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfe  266 (338)
T KOG0265|consen  191 SGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFE  266 (338)
T ss_pred             eccccCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhh
Confidence            99999999999999854    5667779999999999999999999999999999999986543322   2222233445


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ...+.+.|+|++.++.+|+.|+.+++||..+...++.+++|...+.  .+.|||.. .+|.+++.|.+|++=++|
T Consensus       267 knlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn--~~~Fhp~e-~iils~~sdk~i~lgei~  338 (338)
T KOG0265|consen  267 KNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN--EVDFHPTE-PIILSCSSDKTIYLGEID  338 (338)
T ss_pred             hhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE--EeeecCCC-cEEEEeccCceeEeeccC
Confidence            5677899999999999999999999999999999999999877766  57899965 999999999999986554

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-38  Score=276.59  Aligned_cols=292  Identities=16%  Similarity=0.208  Sum_probs=247.5

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..+++|++.|+.++..+. +...|++++.|..+.+|++...+. .+..++.+.+|...|..+..++++ ++.++++.|++
T Consensus         9 ~tl~gh~d~Vt~la~~~~-~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~   86 (315)
T KOG0279|consen    9 GTLEGHTDWVTALAIKIK-NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGT   86 (315)
T ss_pred             eeecCCCceEEEEEeecC-CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-ceEEeccccce
Confidence            346899999999999984 568999999999999999976432 356788999999999999999999 99999999999


Q ss_pred             EEEEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeEEEEEecCC-CCE
Q 009380          307 IRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARINTIDFNPRN-PNI  382 (536)
Q Consensus       307 I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~i~~~p~~-~~~  382 (536)
                      +++||+.+++. ..+.+|...|.+++|++++ ..+++|+.|.+|.+|++.. .+..++..  +.+.|.|++|+|.. .-+
T Consensus        87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~  164 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPI  164 (315)
T ss_pred             EEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence            99999999754 4566899999999999998 8999999999999999864 44455543  37899999999973 359


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI  462 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  462 (536)
                      |++++.|++|++||+++.+    ....+.+|.+.++.+.+||||.++++|+.||.+.+||++.++.+..+.+..    .+
T Consensus       165 Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~----~v  236 (315)
T KOG0279|consen  165 IVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFD----IV  236 (315)
T ss_pred             EEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCC----eE
Confidence            9999999999999999853    555667999999999999999999999999999999999999988776544    23


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc-------eeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY-------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~-------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                        ..++|+|+...|+.+. +..|+|||+.++.++..+....       ..+.+..++|++ +|..|.+|-.|+.|++|.+
T Consensus       237 --~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  237 --NSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             --eeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEEe
Confidence              3478999876666554 5569999999998888776432       245667889988 7899999999999999986

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.2e-40  Score=308.00  Aligned_cols=293  Identities=18%  Similarity=0.282  Sum_probs=254.8

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      ....+|+..|+++.|.|. .+.+|++|+.|+.|+||++...   ..++++|.+|..+|.+++|++++ ..|+|+|+|+.|
T Consensus       208 ~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l  282 (503)
T KOG0282|consen  208 HNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFL  282 (503)
T ss_pred             eeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccC-Ceeeeeecceee
Confidence            345789999999999996 6789999999999999999874   78999999999999999999999 999999999999


Q ss_pred             EEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          308 RLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       308 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      ++||+++|++...+.....++|+.|+|++.+.+++|+.|+.|+.||+|+++.++.+..|-+.|..|.|-+.| ..+++.+
T Consensus       283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g-~rFissS  361 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEG-RRFISSS  361 (503)
T ss_pred             eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCC-ceEeeec
Confidence            999999999999999999999999999999999999999999999999999999999999999999999977 7899999


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc---eEEeccCCCCceeee
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---SMIHHNNQTGRWISS  464 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~  464 (536)
                      .|++++||+.+..-   ........+.....++..+|++.++++-+.|+.|.+|.+...-..   ..+......|   ..
T Consensus       362 Ddks~riWe~~~~v---~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG---ys  435 (503)
T KOG0282|consen  362 DDKSVRIWENRIPV---PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG---YS  435 (503)
T ss_pred             cCccEEEEEcCCCc---cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC---ce
Confidence            99999999998742   111222234556778999999999999999999999987543222   2222222222   23


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      +.+.|||||.+|++|+.||.+.+||..+-+.+..++.|...  ++.+.|||.....+|+|+.||.|++|+
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~--ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP--CIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc--eEEEEecCCCcceeEecccCceeEecC
Confidence            45889999999999999999999999999999999987443  357899999889999999999999996

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.1e-37  Score=290.56  Aligned_cols=321  Identities=20%  Similarity=0.285  Sum_probs=273.2

Q ss_pred             cccccceeeeecCCCCc-ccccccccccccccccccceEEecccccCc-----ccccc----------ccCCceEEEEEE
Q 009380          180 KDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-----ENIAR----------IMPGRITQMKFL  243 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-----~~~~~----------~~~~~I~~v~~~  243 (536)
                      -.|...|.+|.+.|-.. ++++          ++.+...++|++....     ..+++          .....|++++|+
T Consensus       175 l~~~~~V~~~~WnP~~~~llas----------g~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn  244 (524)
T KOG0273|consen  175 LRHESEVFICAWNPLRDGLLAS----------GSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN  244 (524)
T ss_pred             ccCCCceEEEecCchhhhhhhc----------cCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence            34999999999999988 6663          4666788999985411     11111          114689999999


Q ss_pred             ecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC
Q 009380          244 PCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS  323 (536)
Q Consensus       244 p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~  323 (536)
                      .  +|.+||+|+.||.++||+..     +..+.++..|.++|.++.|+..| ++|++++.|+++.+||..++.....+..
T Consensus       245 ~--~G~~LatG~~~G~~riw~~~-----G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~  316 (524)
T KOG0273|consen  245 N--DGTLLATGSEDGEARIWNKD-----GNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEF  316 (524)
T ss_pred             C--CCCeEEEeecCcEEEEEecC-----chhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeee
Confidence            9  99999999999999999998     67889999999999999999999 9999999999999999999988777664


Q ss_pred             -CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          324 -EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       324 -~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                       ..+-..+.|..+.  -+++.+.||.|+++-+....++.++.+|.+.|.+|.|+|.+ .+|+++|.|++++||...... 
T Consensus       317 ~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~-  392 (524)
T KOG0273|consen  317 HSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSN-  392 (524)
T ss_pred             ccCCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCc-
Confidence             4455889998764  79999999999999999999999999999999999999988 799999999999999987643 


Q ss_pred             CCCCcceeecccCceeEEEEccCC---------CeEEEEeCCCcEEEEeCCCCCcceEE-eccCCCCceeeeeEEEEcCC
Q 009380          403 DKPEPMKVLSHKRAVHSAYFSPSG---------SSLATTSFDDTIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       403 ~~~~~~~~~~~~~~v~~l~~sp~g---------~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~  472 (536)
                         ....+..|...|..+.|+|.|         ..+++++.|++|++||+..+.+++.+ .|..      .++.++|+|+
T Consensus       393 ---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~------pVysvafS~~  463 (524)
T KOG0273|consen  393 ---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE------PVYSVAFSPN  463 (524)
T ss_pred             ---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC------ceEEEEecCC
Confidence               556677899999999999965         37999999999999999999999987 3332      2344889999


Q ss_pred             CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      |+|+++|+.||.|.+|++.+++.++.+.+...  + ..++|+- +|+.|..+-.||.+++-|+
T Consensus       464 g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~--I-fel~Wn~-~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  464 GRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG--I-FELCWNA-AGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             CcEEEecCCCCeeEeccccchheeEeecCCCe--E-EEEEEcC-CCCEEEEEecCCCceEEEe
Confidence            99999999999999999999999888876432  2 4577776 5699999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.9e-37  Score=267.54  Aligned_cols=288  Identities=17%  Similarity=0.304  Sum_probs=244.6

Q ss_pred             cccccceEEecccccCcccccccc-CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIM-PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI  288 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~-~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l  288 (536)
                      +.++|-+|++|..........-.| .+.|+.+...|  ++.+||+++. ..|++||+.+..  ..++.+|.+|+..|+++
T Consensus        15 sA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp--dk~~LAaa~~-qhvRlyD~~S~n--p~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   15 SAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP--DKKDLAAAGN-QHVRLYDLNSNN--PNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eccCcceeeeeehhcCeEEEEEecCccceeeEEEcC--CcchhhhccC-CeeEEEEccCCC--CCceeEEeccCCceEEE
Confidence            679999999999865544333334 67899999999  9999999885 589999999864  45899999999999999


Q ss_pred             EEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccC
Q 009380          289 VTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHE  367 (536)
Q Consensus       289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~  367 (536)
                      .|..+| ..+++||.||+++|||++...+...+.+..+|+++..+|+. ..|++|..+|.|++||+....+...+. ...
T Consensus        90 gF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liPe~~  167 (311)
T KOG0315|consen   90 GFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIPEDD  167 (311)
T ss_pred             EEeecC-eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence            999999 99999999999999999999999999999999999999998 789999999999999999887766655 345


Q ss_pred             CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC--CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD--KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      ..|.++...|+| .+++.+...|.+++|++-.....  ...+.++..|.+.+..+.+||++++|++++.|.+++||+..+
T Consensus       168 ~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  168 TSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             cceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            689999999998 68888999999999999774321  123344567999999999999999999999999999999988


Q ss_pred             C-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380          446 F-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       446 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      + +....+.   ...+|+..  ++||.||.||++|+.|+.+++|++..++.+..+.+|+...+++.
T Consensus       247 ~~kle~~l~---gh~rWvWd--c~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~  307 (311)
T KOG0315|consen  247 FFKLELVLT---GHQRWVWD--CAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA  307 (311)
T ss_pred             ceeeEEEee---cCCceEEe--eeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence            7 2222221   22346554  88999999999999999999999999999999999988877543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1e-37  Score=287.79  Aligned_cols=281  Identities=20%  Similarity=0.311  Sum_probs=249.5

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      .-.|..|.|.|  +|+.|++|+..|.+.+|+...    ......++.|..+|.++.|++++ .+++||+.+|.|++|+..
T Consensus        96 kc~V~~v~WtP--eGRRLltgs~SGEFtLWNg~~----fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpn  168 (464)
T KOG0284|consen   96 KCPVNVVRWTP--EGRRLLTGSQSGEFTLWNGTS----FNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPN  168 (464)
T ss_pred             ccceeeEEEcC--CCceeEeecccccEEEecCce----eeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccc
Confidence            34799999999  999999999999999999875    45556678999999999999999 999999999999999998


Q ss_pred             CCeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          314 KEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       314 ~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      -.....+..|. ..|.+++|+|++ ..|++++.||+|+|||....+.-..+.+|.-.|.+++|||.. .++++||.|..|
T Consensus       169 mnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlV  246 (464)
T KOG0284|consen  169 MNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLV  246 (464)
T ss_pred             hhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-ceeEEccCCcee
Confidence            87777677665 899999999987 899999999999999999999888999999999999999976 699999999999


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEEEcC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAIWGW  471 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~  471 (536)
                      ++||.+++.    .+..+..|+..|..+.|+|++++|+|+|.|..+++||+++.+.+..++ |..    .+  .++.|+|
T Consensus       247 KlWDprSg~----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk----dv--~~~~WhP  316 (464)
T KOG0284|consen  247 KLWDPRSGS----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK----DV--TSLTWHP  316 (464)
T ss_pred             EeecCCCcc----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh----hh--eeecccc
Confidence            999999975    566778999999999999999999999999999999999888887775 332    12  2367888


Q ss_pred             C-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          472 D-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       472 ~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      - ..+|.+|+.||.|..|.+...+++..+...|...+ .+++|||- |.+|++|+.|.++++|..
T Consensus       317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i-wsl~~hPl-Ghil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI-WSLAYHPL-GHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccccceeeccCCCceEEEeccccccccCCCcccccce-eeeecccc-ceeEeecCCCcceeeecc
Confidence            4 56788999999999999997788888887777776 68999994 699999999999999964

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.6e-36  Score=274.00  Aligned_cols=294  Identities=18%  Similarity=0.245  Sum_probs=249.1

Q ss_pred             cccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE
Q 009380          220 GSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF  299 (536)
Q Consensus       220 w~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  299 (536)
                      |...++...++++|.+.|.|+++.|  ...++++|+.|++|+|||+.+    +....++.+|-..|..+++++-. .||+
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP--~n~wf~tgs~DrtikIwDlat----g~LkltltGhi~~vr~vavS~rH-pYlF  209 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDP--GNEWFATGSADRTIKIWDLAT----GQLKLTLTGHIETVRGVAVSKRH-PYLF  209 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCC--CceeEEecCCCceeEEEEccc----CeEEEeecchhheeeeeeecccC-ceEE
Confidence            7777777889999999999999999  889999999999999999998    78889999999999999999998 9999


Q ss_pred             EEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380          300 TSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       300 s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      +++.|+.|++||++..+++. .++|-..|.|++.+|.. ..|++|+.|.++++||+|+...+..+.+|..+|.++.+.|.
T Consensus       210 s~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~  288 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT  288 (460)
T ss_pred             EecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence            99999999999999877654 55788999999999988 89999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      ++ .+++||.|++|++||++.++    .......|...|.+++.+|....|++++.|+ |+-|++..+..+..+...+. 
T Consensus       289 dp-qvit~S~D~tvrlWDl~agk----t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~-  361 (460)
T KOG0285|consen  289 DP-QVITGSHDSTVRLWDLRAGK----TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNA-  361 (460)
T ss_pred             CC-ceEEecCCceEEEeeeccCc----eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccc-
Confidence            86 68999999999999999975    6667778999999999999999999999876 99999988877766532222 


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC---C----ceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS---P----YISAIPCRFHAHPHQVGTLAGATGGGQVY  531 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~---~----~~~~~~~~~~~~p~~~~~lasgs~Dg~v~  531 (536)
                        .+..  +.-.. ..++++|+.+|.+.+||..++-..+.++.   +    ....+ ...+|.- .+..|++|..|.+|+
T Consensus       362 --iint--l~~ns-D~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI-~as~fDk-tg~rlit~eadKtIk  434 (460)
T KOG0285|consen  362 --IINT--LSVNS-DGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGI-FASCFDK-TGSRLITGEADKTIK  434 (460)
T ss_pred             --eeee--eeecc-CceEEEcCCceEEEEEecCcCcccccccccccCCccccccce-eEEeecc-cCceEEeccCCcceE
Confidence              2233  22233 44899999999999999998865554421   1    11112 2344544 358999999999999


Q ss_pred             EEec
Q 009380          532 VWTS  535 (536)
Q Consensus       532 iW~~  535 (536)
                      +|.-
T Consensus       435 ~~ke  438 (460)
T KOG0285|consen  435 MYKE  438 (460)
T ss_pred             EEec
Confidence            9974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.5e-36  Score=293.87  Aligned_cols=336  Identities=15%  Similarity=0.194  Sum_probs=272.2

Q ss_pred             eecc-cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEe
Q 009380          178 VIKD-EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       178 ~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      .++. |...|....|+|.+.+++          +++.||.+.+||+.... ...+++|++.|.++.|+|.....+|++|.
T Consensus        99 swKa~He~Pvi~ma~~~~g~LlA----------tggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~  168 (775)
T KOG0319|consen   99 SWKAIHEAPVITMAFDPTGTLLA----------TGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA  168 (775)
T ss_pred             hHhhccCCCeEEEEEcCCCceEE----------eccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecC
Confidence            3455 999999999999997777          57999999999986554 34579999999999999966667799999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-------------------
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-------------------  316 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-------------------  316 (536)
                      .|++|++||+.+.   ..++..+..|...|++++|.+++ ..+++++.|..|.+||+.+.+                   
T Consensus       169 ~D~~v~vwnl~~~---~tcl~~~~~H~S~vtsL~~~~d~-~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~  244 (775)
T KOG0319|consen  169 TDGTVRVWNLNDK---RTCLHTMILHKSAVTSLAFSEDS-LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLRE  244 (775)
T ss_pred             CCceEEEEEcccC---chHHHHHHhhhhheeeeeeccCC-ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEech
Confidence            9999999999964   34788899999999999999998 888888888888888873210                   


Q ss_pred             -------E------------------------------------------------------------------------
Q 009380          317 -------F------------------------------------------------------------------------  317 (536)
Q Consensus       317 -------~------------------------------------------------------------------------  317 (536)
                             .                                                                        
T Consensus       245 ~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd  324 (775)
T KOG0319|consen  245 ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND  324 (775)
T ss_pred             hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch
Confidence                   0                                                                        


Q ss_pred             ----------------------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc----c
Q 009380          318 ----------------------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK----S  359 (536)
Q Consensus       318 ----------------------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~----~  359 (536)
                                                        ..+.+|...|.+++...+| .+|++|+.|.++++|.++.+.    +
T Consensus       325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~  403 (775)
T KOG0319|consen  325 EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLC  403 (775)
T ss_pred             hheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhh
Confidence                                              1122455567777744455 689999999999999885443    3


Q ss_pred             ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc-c----eeecccCceeEEEEccCCCeEEEEeC
Q 009380          360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-M----KVLSHKRAVHSAYFSPSGSSLATTSF  434 (536)
Q Consensus       360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~-~----~~~~~~~~v~~l~~sp~g~~l~t~s~  434 (536)
                      +....+|...|.+|+++..+..+|+++|.|++|++|++...+.....+ +    ....|...|++++++|+.++|+|||.
T Consensus       404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq  483 (775)
T KOG0319|consen  404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ  483 (775)
T ss_pred             hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence            555679999999999998888899999999999999998833222211 1    22369999999999999999999999


Q ss_pred             CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeec
Q 009380          435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH  514 (536)
Q Consensus       435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~  514 (536)
                      |.+.+||++.+.....++..+   .+  ...++.|++..+.++++|.|.+|+||.+.+..++.+|.+|...+..+.  |-
T Consensus       484 DktaKiW~le~~~l~~vLsGH---~R--Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~--F~  556 (775)
T KOG0319|consen  484 DKTAKIWDLEQLRLLGVLSGH---TR--GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS--FI  556 (775)
T ss_pred             ccceeeecccCceEEEEeeCC---cc--ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee--ee
Confidence            999999999977666666422   22  234478999999999999999999999999999999999888777544  44


Q ss_pred             CCCCCEEEEEccCCeEEEEecC
Q 009380          515 PHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       515 p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      . ++..|++++.||.|+||++.
T Consensus       557 ~-~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  557 R-NGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             e-CCcEEEeccCCCcEEEEecc
Confidence            3 46999999999999999974

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=5e-37  Score=283.26  Aligned_cols=279  Identities=19%  Similarity=0.249  Sum_probs=244.3

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF  262 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i  262 (536)
                      ..|..+.+.|+|+.|.          ++...|.+.||+. .+.-+.+.+.|...|.++.|++  ++.++++|+.+|.|++
T Consensus        97 c~V~~v~WtPeGRRLl----------tgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~--~g~wmiSgD~gG~iKy  164 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLL----------TGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH--NGTWMISGDKGGMIKY  164 (464)
T ss_pred             cceeeEEEcCCCceeE----------eecccccEEEecCceeeHHHHhhhhcccceeEEEcc--CCCEEEEcCCCceEEe
Confidence            4678899999999888          4578889999996 3445677899999999999999  9999999999999999


Q ss_pred             EECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCCEE
Q 009380          263 WNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTL  340 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l  340 (536)
                      |+..     ...+..++.|. ..|.+++|+|+. ..|++||.||+|+|||....+. ..+.+|.-.|.+++|+|.. .+|
T Consensus       165 Wqpn-----mnnVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLi  237 (464)
T KOG0284|consen  165 WQPN-----MNNVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLI  237 (464)
T ss_pred             cccc-----hhhhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-cee
Confidence            9988     45566666665 899999999987 9999999999999999876544 3456899999999999997 799


Q ss_pred             EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380          341 YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA  420 (536)
Q Consensus       341 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l  420 (536)
                      ++|+.|..|++||.+++.++.++..|...|..+.|+|++ ++|+|+|.|..++++|+|+.+    .+....+|...|+++
T Consensus       238 asgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~  312 (464)
T KOG0284|consen  238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSL  312 (464)
T ss_pred             EEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH----HHHHhhcchhhheee
Confidence            999999999999999999999999999999999999988 899999999999999999754    677777999999999


Q ss_pred             EEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          421 YFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       421 ~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      .|+| ...+|.+|+.||.|..|.+...+++..+......    .+..++|+|-|.+|++|+.|+++++|..
T Consensus       313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~----~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG----EIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             ccccccccceeeccCCCceEEEeccccccccCCCccccc----ceeeeeccccceeEeecCCCcceeeecc
Confidence            9999 7788999999999999999866666666443322    3334779999999999999999999975

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-34  Score=285.55  Aligned_cols=298  Identities=17%  Similarity=0.270  Sum_probs=245.1

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcccc-ccccCCceEEEEEEecCCccEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENI-ARIMPGRITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~-~~~~~~~I~~v~~~p~~~~~~l~t  253 (536)
                      +..-+.--...|..+.|+..|..+|-.         ++.=|.+-+|++..+.... .++|..+|++++++|  ||.+|||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g---------~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp--Dgq~iaT  367 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFG---------CSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP--DGQLIAT  367 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEc---------CCccceEEEEEeeccceeeeccccccceeeEEECC--CCcEEEe
Confidence            333344444566677777778877743         3334789999986654432 477999999999999  9999999


Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEE
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLS  331 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~  331 (536)
                      |+.||.|+|||...    +-+..+|..|+..|+.+.|+..+ +.++++|-||+|+.||+.....-..+...  ....|++
T Consensus       368 G~eDgKVKvWn~~S----gfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva  442 (893)
T KOG0291|consen  368 GAEDGKVKVWNTQS----GFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA  442 (893)
T ss_pred             ccCCCcEEEEeccC----ceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE
Confidence            99999999999998    78999999999999999999999 99999999999999999988766666544  4567888


Q ss_pred             ecCCCCCEEEEEECCC-eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380          332 QQPNNVNTLYFGEGQG-GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       332 ~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                      ..|.| .++++|+.|. .|.+|++.+|+.+..+.+|.++|.+++|+|++ ..|+++|.|.+|++||+-...    .....
T Consensus       443 vD~sG-elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~----~~vEt  516 (893)
T KOG0291|consen  443 VDPSG-ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSS----GTVET  516 (893)
T ss_pred             EcCCC-CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccC----ceeee
Confidence            88888 6888888774 69999999999999999999999999999988 699999999999999987632    45566


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-----------------ccCCCCceeeeeEEEEcCCC
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-----------------HNNQTGRWISSFRAIWGWDD  473 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~s~~g  473 (536)
                      ..+...+..++|+|+|+.|++++.||.|.+||.........+.                 .+...+...+.  +++++||
T Consensus       517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftt--i~ySaDG  594 (893)
T KOG0291|consen  517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTT--ICYSADG  594 (893)
T ss_pred             EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEE--EEEcCCC
Confidence            7788999999999999999999999999999987655443332                 11122233333  6799999


Q ss_pred             CEEEEEcCCCcEEEEcCCccccc
Q 009380          474 SCVFIGNMTRTVEVISPAQRRSV  496 (536)
Q Consensus       474 ~~l~~gs~dg~I~v~d~~~~~~~  496 (536)
                      .+|++|+..+.|++|++.++-++
T Consensus       595 ~~IlAgG~sn~iCiY~v~~~vll  617 (893)
T KOG0291|consen  595 KCILAGGESNSICIYDVPEGVLL  617 (893)
T ss_pred             CEEEecCCcccEEEEECchhhee
Confidence            99999999999999999876443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.4e-35  Score=289.59  Aligned_cols=337  Identities=17%  Similarity=0.162  Sum_probs=277.8

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc--cccccccCCceEEEEEEecCCccEE
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      +.-..++||..-|..+.|.|+.....        +..+..|+.+++||+....  ....+.|...|++++|++  |+.-+
T Consensus       138 ~~th~fkG~gGvVssl~F~~~~~~~l--------L~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~  207 (775)
T KOG0319|consen  138 YCTHSFKGHGGVVSSLLFHPHWNRWL--------LASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLEL  207 (775)
T ss_pred             EEEEEecCCCceEEEEEeCCccchhh--------eeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceE
Confidence            44457899999999999999987622        1257899999999986332  355688999999999999  88888


Q ss_pred             EEEeCCCcEEEEECCCC---------------------------------------------------------------
Q 009380          252 VAGSKLGNITFWNLDSQ---------------------------------------------------------------  268 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~---------------------------------------------------------------  268 (536)
                      ++++.|..+.|||+.+.                                                               
T Consensus       208 ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~  287 (775)
T KOG0319|consen  208 LSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHL  287 (775)
T ss_pred             EEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcc
Confidence            88888888888887500                                                               


Q ss_pred             ----------------------------------------------CC------------------CCCceEEeccCCCC
Q 009380          269 ----------------------------------------------QD------------------EDNGIYLFRTHLGP  284 (536)
Q Consensus       269 ----------------------------------------------~~------------------~~~~~~~~~~h~~~  284 (536)
                                                                    ..                  .......+.+|+..
T Consensus       288 ~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~  367 (775)
T KOG0319|consen  288 LAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEA  367 (775)
T ss_pred             eeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhh
Confidence                                                          00                  00111235678889


Q ss_pred             EEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-----EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc
Q 009380          285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-----DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS  359 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-----~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~  359 (536)
                      |.++....+| .+|+|||.|.++++|.++++..     ....+|...|.+++++..+..+|++++.|+++++|++...+.
T Consensus       368 vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~  446 (775)
T KOG0319|consen  368 VLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE  446 (775)
T ss_pred             eeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccc
Confidence            9999865666 8999999999999999865432     233479999999999999989999999999999999986221


Q ss_pred             ---------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE
Q 009380          360 ---------ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       360 ---------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~  430 (536)
                               ..+...|...|+|++.+|.+ .++||||.|.+.+||++..+    .....+.+|+..|+++.|+|..+.++
T Consensus       447 ~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~dq~la  521 (775)
T KOG0319|consen  447 TAFPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKNDQLLA  521 (775)
T ss_pred             ccccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCc----eEEEEeeCCccceEEEEeccccceeE
Confidence                     12234799999999999966 79999999999999999964    25556669999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380          431 TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      |+|.|.+|+||.+.++.++.++..     +...++++.|-.+|..|++++.||-|++|++.+++++.++..|...+.  +
T Consensus       522 T~SgD~TvKIW~is~fSClkT~eG-----H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW--a  594 (775)
T KOG0319|consen  522 TCSGDKTVKIWSISTFSCLKTFEG-----HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW--A  594 (775)
T ss_pred             eccCCceEEEEEeccceeeeeecC-----ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE--E
Confidence            999999999999999999999852     223678899999999999999999999999999999999999887766  6


Q ss_pred             EeecCCCCCEEEEEccCCeEEEEe
Q 009380          511 FHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      ++.+|. ..++++|+.||.|.+|.
T Consensus       595 L~~~~~-~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  595 LSVSPL-LDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             EeecCc-cceeEecCCCeEEEEee
Confidence            777774 47999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.2e-34  Score=251.32  Aligned_cols=273  Identities=16%  Similarity=0.221  Sum_probs=222.6

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE---EEeecCCC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF---DLVYSSEY  325 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~---~~~~~~~~  325 (536)
                      -+|++++.|.+|++|...+    +.+..+++...+.|+.+...|++ ..|++++. -.|++||++++..   ..+.+|..
T Consensus        11 viLvsA~YDhTIRfWqa~t----G~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~k   84 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALT----GICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTK   84 (311)
T ss_pred             eEEEeccCcceeeeeehhc----CeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCC
Confidence            5899999999999999998    89999999888999999999998 88888874 5699999998643   44557889


Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                      .|+++.|..+| +.+++|+.||+++|||+|...+.+.++ |..+|++|..+|.. ..|++|..+|.|++||++...+.  
T Consensus        85 NVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~--  159 (311)
T KOG0315|consen   85 NVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCT--  159 (311)
T ss_pred             ceEEEEEeecC-eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccc--
Confidence            99999999998 899999999999999999977666665 78999999999965 68999999999999999985321  


Q ss_pred             CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCc
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRT  484 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~  484 (536)
                       ...+..-...|.++...|+|.+++.+...|..++|++-+......+. ......+.-..+++.+|||+++|++++.|.+
T Consensus       160 -~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  160 -HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             -cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence             11122345789999999999999999999999999987644332221 1111111224566889999999999999999


Q ss_pred             EEEEcCCcc-ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          485 VEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       485 I~v~d~~~~-~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++||+.++. +.-..+.+|..-...|  .|+. |+.+|++|+.|+.+++|++.
T Consensus       239 v~iwn~~~~~kle~~l~gh~rWvWdc--~FS~-dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  239 VKIWNTDDFFKLELVLTGHQRWVWDC--AFSA-DGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             EEEEecCCceeeEEEeecCCceEEee--eecc-CccEEEecCCCCceeecccc
Confidence            999999988 4445667766556545  4444 78999999999999999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=5.5e-34  Score=271.00  Aligned_cols=339  Identities=13%  Similarity=0.165  Sum_probs=268.6

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-c---ccccCCceEEEEEEecCCc
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-I---ARIMPGRITQMKFLPCSDV  248 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~---~~~~~~~I~~v~~~p~~~~  248 (536)
                      |.++..+..|..=|.|+.|+|||..++          +.+.||++.|||-...+.. .   ...|.+.|+++.|+|  |+
T Consensus       180 FKFk~s~r~HskFV~~VRysPDG~~Fa----------t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP--Ds  247 (603)
T KOG0318|consen  180 FKFKSSFREHSKFVNCVRYSPDGSRFA----------TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP--DS  247 (603)
T ss_pred             eeeeecccccccceeeEEECCCCCeEE----------EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC--CC
Confidence            456677788999999999999999999          4589999999996443321 1   247999999999999  99


Q ss_pred             cEEEEEeCCCcEEEEECCCCCC---------------------------------------CCCceEEeccCCCCEEEEE
Q 009380          249 RMVVAGSKLGNITFWNLDSQQD---------------------------------------EDNGIYLFRTHLGPISGIV  289 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~---------------------------------------~~~~~~~~~~h~~~V~~l~  289 (536)
                      ..+++++.|.+++|||+.+...                                       ....+..+.+|...|+++.
T Consensus       248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt  327 (603)
T KOG0318|consen  248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT  327 (603)
T ss_pred             ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence            9999999999999999874210                                       1234456779999999999


Q ss_pred             EecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--------
Q 009380          290 TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--------  359 (536)
Q Consensus       290 ~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--------  359 (536)
                      .++++ .+|++|++||.|.-|+..++....+  ..|...|.+++.+..+  .+++.+.|.+|++.++.....        
T Consensus       328 v~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l  404 (603)
T KOG0318|consen  328 VSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKL  404 (603)
T ss_pred             EcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeec
Confidence            99999 9999999999999999999887766  4688999999998765  578888888999997743210        


Q ss_pred             -----------------------ceeEecc--------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380          360 -----------------------ATEWLLH--------EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM  408 (536)
Q Consensus       360 -----------------------~~~~~~h--------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~  408 (536)
                                             +..++.+        .-...+++++|++ ..++.|+.||.|+||.+.....  ....
T Consensus       405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l--~ee~  481 (603)
T KOG0318|consen  405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDEL--KEEA  481 (603)
T ss_pred             CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcc--ccee
Confidence                                   0011111        1235688999977 7999999999999999987542  2334


Q ss_pred             eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      ....|.+.|++++||||+.+|++|...+.+.+||+.+.+..... .   .-+...+.+++|+|+..+||+|+.|-.|.||
T Consensus       482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-w---~FHtakI~~~aWsP~n~~vATGSlDt~Viiy  557 (603)
T KOG0318|consen  482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-W---AFHTAKINCVAWSPNNKLVATGSLDTNVIIY  557 (603)
T ss_pred             eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-e---eeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence            55689999999999999999999999999999999887652211 1   1111234558999999999999999999999


Q ss_pred             cCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          489 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       489 d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++........+++.|...+ ..+.|-  +...|++.+.|..|++|++.
T Consensus       558 sv~kP~~~i~iknAH~~gV-n~v~wl--de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  558 SVKKPAKHIIIKNAHLGGV-NSVAWL--DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EccChhhheEeccccccCc-eeEEEe--cCceEEeccCcceeEEeccc
Confidence            9988766666666565554 567776  45899999999999999873

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=293.91  Aligned_cols=293  Identities=23%  Similarity=0.340  Sum_probs=246.4

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ..+...|+++.|+|  +|.++++++.++.+++|++.....  .....+.+|...|.+++|+|++ .++++++.|++|++|
T Consensus       156 ~~~~~sv~~~~fs~--~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  156 GHECPSVTCVDFSP--DGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIW  230 (456)
T ss_pred             ccccCceEEEEEcC--CCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEecCCceEEEe
Confidence            44578999999999  999999999999999999965210  2566678999999999999999 899999999999999


Q ss_pred             ECC-CCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          311 DAE-KEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       311 d~~-~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      |+. .+.. ..+.+|...|++++|+|++ +++++|+.|++|+|||+++++++..+.+|.+.|++++|++++ ++|++++.
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~-~~l~s~s~  308 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG-NLLVSASY  308 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC-CEEEEcCC
Confidence            994 4344 4556899999999999999 999999999999999999999999999999999999999988 79999999


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      |+.|+|||+.++...  ....+..+..  .++++.|+|++.+|++++.|+.+++||+..+.....+.......  ...+.
T Consensus       309 d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~--~~~~~  384 (456)
T KOG0266|consen  309 DGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV--RCIFS  384 (456)
T ss_pred             CccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc--eeEec
Confidence            999999999986411  1122233333  59999999999999999999999999999888877774332221  23334


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc--cCCeEEEEecC
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTSD  536 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs--~Dg~v~iW~~d  536 (536)
                      ...++.+.++++|+.|+.|++|+..++..+..+.+|.... ...+.+||. .+++++++  .|+.|++|..+
T Consensus       385 ~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~-~~~~~~~~~-~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  385 PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAA-VSDLSSHPT-ENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCc-eeccccCCC-cCeeeecCcCCCceEEEecCC
Confidence            5568899999999999999999999999999999874333 357888985 48999988  79999999754

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4e-35  Score=270.85  Aligned_cols=295  Identities=15%  Similarity=0.201  Sum_probs=248.7

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      .....++..|.+.|+-+.|++  +|++||++++|.+..+|.+..... .+..+++.+|..+|..+.|+||. ++|++|+.
T Consensus       214 ~qt~qil~~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~-~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~  289 (519)
T KOG0293|consen  214 SQTWQILQDHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVH-FKLKKTLVGHSQPVSYIMWSPDD-RYLLACGF  289 (519)
T ss_pred             chhhhhHhhCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcc-eeeeeeeecccCceEEEEECCCC-CeEEecCc
Confidence            344567788999999999999  999999999999999999876432 56678999999999999999999 99999999


Q ss_pred             CCeEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeEEEEEecCCC
Q 009380          304 DGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNP  380 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~  380 (536)
                      |..+.+||+.+|.....+.+.  ..+.+++|.|++ ..+++|+.|+++..||+. |..+..+++-. ..|.+++..+|| 
T Consensus       290 ~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dg-  366 (519)
T KOG0293|consen  290 DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDG-  366 (519)
T ss_pred             hHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCC-
Confidence            999999999999988888765  789999999999 789999999999999985 55566776443 569999999998 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR  460 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  460 (536)
                      .++++.+.|..|++++..+.     ..........+|++++.|.+++++++.-.+..|++||+.....+..+....+ + 
T Consensus       367 k~vl~v~~d~~i~l~~~e~~-----~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-~-  439 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREAR-----VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-G-  439 (519)
T ss_pred             cEEEEEecccceeeechhhh-----hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-c-
Confidence            57777778999999998873     2233455678999999999999999999999999999997766665533222 2 


Q ss_pred             eeeeeEEEEcC-CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          461 WISSFRAIWGW-DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       461 ~~~~~~~~~s~-~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                       ...++.+|.. +..++++|+.|+.|+||+..+++++..+.+|...+.  .++|+|.+..++|+||+||+|+||..
T Consensus       440 -~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN--cVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  440 -HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN--CVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             -ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee--EEecCCCCHHHhhccCCCCeEEEecC
Confidence             2334456654 458999999999999999999999999999775544  68999999999999999999999975

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.1e-35  Score=265.54  Aligned_cols=289  Identities=16%  Similarity=0.205  Sum_probs=254.8

Q ss_pred             ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ......+|..+|+.+-|+|  +-.++++++.|++|++||..+    +.....+++|...|..|.|+..| .+|++|+.|-
T Consensus       100 l~~~l~g~r~~vt~v~~hp--~~~~v~~as~d~tikv~D~~t----g~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl  172 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHP--SEALVVSASEDATIKVFDTET----GELERSLRGHTDSVFDISFDASG-KYLATCSSDL  172 (406)
T ss_pred             chhhhhccccceeeeeecc--CceEEEEecCCceEEEEEccc----hhhhhhhhccccceeEEEEecCc-cEEEecCCcc
Confidence            3444567899999999999  889999999999999999998    67789999999999999999999 9999999999


Q ss_pred             eEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEE
Q 009380          306 LIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIM  383 (536)
Q Consensus       306 ~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l  383 (536)
                      .+.+||..+.  .+....+|+..|.+++|-|.+ +++++++.|.+|+.|++.++-+++++.+|...|..+..+.|| .++
T Consensus       173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG-ti~  250 (406)
T KOG0295|consen  173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG-TII  250 (406)
T ss_pred             chhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe-eEE
Confidence            9999999873  445667899999999999998 899999999999999999999999999999999999999988 799


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC---------------CCeEEEEeCCCcEEEEeCCCCCc
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS---------------GSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~---------------g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      ++++.|.+|++|-+.+.+    ....+..|..+|-+++|.|.               +.++.+++.|++|++||+.++.+
T Consensus       251 As~s~dqtl~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c  326 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQ----CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC  326 (406)
T ss_pred             EecCCCceEEEEEeccch----hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence            999999999999998853    33455689999999999773               25899999999999999999998


Q ss_pred             ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380          449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG  528 (536)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg  528 (536)
                      +.++..   ...|+..  ++|+|.|+||+++..|++++|||+.+++++..+..|..-+  ..+.||-+ ..++++|+-|.
T Consensus       327 L~tL~g---hdnwVr~--~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv--t~lDfh~~-~p~VvTGsVdq  398 (406)
T KOG0295|consen  327 LFTLVG---HDNWVRG--VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV--TSLDFHKT-APYVVTGSVDQ  398 (406)
T ss_pred             EEEEec---ccceeee--eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee--EEEecCCC-CceEEeccccc
Confidence            888853   2336665  7799999999999999999999999999999998655444  46788764 47999999999


Q ss_pred             eEEEEec
Q 009380          529 QVYVWTS  535 (536)
Q Consensus       529 ~v~iW~~  535 (536)
                      .+++|..
T Consensus       399 t~KvwEc  405 (406)
T KOG0295|consen  399 TVKVWEC  405 (406)
T ss_pred             eeeeeec
Confidence            9999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.4e-34  Score=248.81  Aligned_cols=291  Identities=15%  Similarity=0.215  Sum_probs=231.8

Q ss_pred             cccccccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCCCCCceEEe-ccCCCCEEEEEEecCCCCEEEEEECC
Q 009380          227 ENIARIMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCYD  304 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~d  304 (536)
                      ....++|.++|..++|+|  . |.+||+|+.|..|+||+..... ...+...+ .+|+..|.+++|+|.| ++|+++|.|
T Consensus         7 ~~~~~gh~~r~W~~awhp--~~g~ilAscg~Dk~vriw~~~~~~-s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD   82 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHP--GKGVILASCGTDKAVRIWSTSSGD-SWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFD   82 (312)
T ss_pred             EEeecCCCCcEEEEEecc--CCceEEEeecCCceEEEEecCCCC-cEEEEEeccccchheeeeeeecCCC-cEEEEeecc
Confidence            344688999999999999  5 7899999999999999998521 12333333 4799999999999999 999999999


Q ss_pred             CeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC---ccceeEeccCCCeEEEEEecC
Q 009380          305 GLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR---KSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       305 g~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      .++.||.-..+.+   ..+.+|+..|.|++|+++| ++|++++.|..|-||.+..+   .++..++.|...|..+.|||.
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            9999998877654   3456899999999999999 89999999999999998754   457788899999999999997


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      . .+|+++|.|.+|++|+-... ..-.....+.+|...|.+++|++.|..|++++.|++++||-..+     .+.+  ..
T Consensus       162 ~-dlL~S~SYDnTIk~~~~~~d-ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~--~~  232 (312)
T KOG0645|consen  162 E-DLLFSCSYDNTIKVYRDEDD-DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSG--MH  232 (312)
T ss_pred             c-ceeEEeccCCeEEEEeecCC-CCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccch--hc
Confidence            6 69999999999999987632 11234556668999999999999999999999999999998642     1111  11


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc------ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR------RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~------~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                      .+.+.  .+.|.  ...|++++.|+.|++|.....      +.+....+.|...+ .++.|.|.-.+.|++|+.||.|++
T Consensus       233 sr~~Y--~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dV-NsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  233 SRALY--DVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDV-NSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             ccceE--eeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccccc-ceEEEcCCCCCceeecCCCceEEE
Confidence            12222  25576  458999999999999976542      23343444454444 578999965689999999999999


Q ss_pred             EecC
Q 009380          533 WTSD  536 (536)
Q Consensus       533 W~~d  536 (536)
                      |.++
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=4.9e-35  Score=291.54  Aligned_cols=249  Identities=21%  Similarity=0.304  Sum_probs=219.2

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-------------------------------
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-------------------------------  224 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-------------------------------  224 (536)
                      .+++.-....+.|+.|++|+..+|..          =.|..|++|.+..                               
T Consensus       371 ~YT~~nt~~~v~ca~fSddssmlA~G----------f~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  371 MYTFHNTYQGVTCAEFSDDSSMLACG----------FVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS  440 (707)
T ss_pred             EEEEEEcCCcceeEeecCCcchhhcc----------ccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence            45555666899999999999988833          2334555554431                               


Q ss_pred             -CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          225 -KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       225 -~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                       .....+.+|.++|+.+.|+|  +.++|++++.|++|++|.+.+    ..++-.+++|..+|+++.|+|.| -+|+|||.
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsP--d~rfLlScSED~svRLWsl~t----~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~  513 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSP--DRRFLLSCSEDSSVRLWSLDT----WSCLVIYKGHLAPVWDVQFAPRG-YYFATASH  513 (707)
T ss_pred             CceeEEeecCCCceeeeeecc--cccceeeccCCcceeeeeccc----ceeEEEecCCCcceeeEEecCCc-eEEEecCC
Confidence             01123568999999999999  999999999999999999998    78999999999999999999999 99999999


Q ss_pred             CCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          304 DGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      |++-++|.........+ .+|-..|.|+.|+|+. +++++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+| .+
T Consensus       514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G-r~  591 (707)
T KOG0263|consen  514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG-RY  591 (707)
T ss_pred             CceeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC-ce
Confidence            99999999987665554 4788999999999998 999999999999999999999999999999999999999987 89


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      |++|+.||.|++||+.++.    .+..+.+|.+.|.++.|+.+|..|++|+.|++|++||+....
T Consensus       592 LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  592 LASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             EeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9999999999999999964    667778999999999999999999999999999999986543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.6e-34  Score=268.93  Aligned_cols=280  Identities=20%  Similarity=0.247  Sum_probs=249.8

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF  262 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i  262 (536)
                      ...|.++.++.+|..|+          ++..+|.+++|+........+..|.++|.++.|+.  .|+||++++.||++.+
T Consensus       235 nkdVT~L~Wn~~G~~La----------tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttil  302 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLA----------TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTIL  302 (524)
T ss_pred             cCCcceEEecCCCCeEE----------EeecCcEEEEEecCchhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEE
Confidence            36899999999999999          55899999999998888888899999999999999  9999999999999999


Q ss_pred             EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCCEEE
Q 009380          263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLY  341 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~  341 (536)
                      ||..+    +.....+.-|..+-..+.|-.+  ..|++++.|+.|+|+.+....+ ..+.+|.+.|.++.|.|.+ .+|+
T Consensus       303 wd~~~----g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLa  375 (524)
T KOG0273|consen  303 WDAHT----GTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLA  375 (524)
T ss_pred             EeccC----ceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEE
Confidence            99987    6777788889888788999866  6899999999999999976544 4566799999999999999 8999


Q ss_pred             EEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCC--------CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380          342 FGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNP--------NIMATSSTDGTACIWDLRSMATDKPEPMKVLSH  413 (536)
Q Consensus       342 ~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~--------~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~  413 (536)
                      +++.|++++||.+........+..|...|..+.|+|.|+        ..+++++.|++|++||+..+.    .+..+..|
T Consensus       376 S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv----~i~~f~kH  451 (524)
T KOG0273|consen  376 SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV----PIHTLMKH  451 (524)
T ss_pred             EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc----eeEeeccC
Confidence            999999999999999999999999999999999999763        479999999999999999864    55556699


Q ss_pred             cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      ..+|++++|+|+|.|+++|+.||.|.||+.++++..+.+....      .++.++|+.+|.+|.++-.|+.+++.|+.
T Consensus       452 ~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~------~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  452 QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG------GIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC------eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999999999999999988887774433      25568899999999999999999998864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=8.6e-34  Score=258.69  Aligned_cols=331  Identities=11%  Similarity=0.102  Sum_probs=271.6

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEe
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      ..+..|.+.|.+|..+|+..+++          +++.|....||++...+.. .+.+|.+.|+++.|+.  +|.+||||+
T Consensus        58 ~tF~~H~~svFavsl~P~~~l~a----------TGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGd  125 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNNLVA----------TGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGD  125 (399)
T ss_pred             eehhhcCCceEEEEeCCCCceEE----------ecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecC
Confidence            35788999999999999777777          5678889999998766533 3578999999999999  999999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEecC
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~  334 (536)
                      .+|.|+||...+    +.....+...-..|.-+.|+|.+ ..|+.|+.||.|.+|.+.+ +.+..+.+|..++++=.|.|
T Consensus       126 msG~v~v~~~st----g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p  200 (399)
T KOG0296|consen  126 MSGKVLVFKVST----GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP  200 (399)
T ss_pred             CCccEEEEEccc----CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccC
Confidence            999999999998    45555555556678889999988 9999999999999999998 56677778999999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEecc-CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----CCcce
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----PEPMK  409 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----~~~~~  409 (536)
                      +| ..++++..||+|++||+.+++++..+... .....++.++..+ ..+++|+.++.+++-...+++...    ..+..
T Consensus       201 dG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l  278 (399)
T KOG0296|consen  201 DG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGKVVNCNNGTVPEL  278 (399)
T ss_pred             CC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc-ceeEeccCCccEEEEccccceEEEecCCCCccc
Confidence            98 89999999999999999999998887632 3456788888766 688999999999888877764211    11222


Q ss_pred             eecccCceeEEEEcc---CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380          410 VLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVE  486 (536)
Q Consensus       410 ~~~~~~~v~~l~~sp---~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~  486 (536)
                      ...+...+.++.+.|   .-.+.|+|+.||+|.|||+......+...|...      ++++.|-+ ..+|++++.||.|+
T Consensus       279 ~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~------V~~l~w~~-t~~l~t~c~~g~v~  351 (399)
T KOG0296|consen  279 KPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG------VTKLKWLN-TDYLLTACANGKVR  351 (399)
T ss_pred             cccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc------eEEEEEcC-cchheeeccCceEE
Confidence            224555555655555   556889999999999999998887777766543      44577887 67999999999999


Q ss_pred             EEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          487 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       487 v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .||.++|+++.++.+|...+.  .|+.+| +.+.++++|.|++.+||++.
T Consensus       352 ~wDaRtG~l~~~y~GH~~~Il--~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  352 QWDARTGQLKFTYTGHQMGIL--DFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeeccccceEEEEecCchhee--EEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            999999999999999877765  677778 56999999999999999863

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-33  Score=275.37  Aligned_cols=340  Identities=15%  Similarity=0.159  Sum_probs=283.3

Q ss_pred             cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecC
Q 009380          170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCS  246 (536)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~  246 (536)
                      ...|.+..++.||.+.|.++.|+.|.+.+.          +++.|-.++||.+.....   ..+.+|.+.|..+-|..  
T Consensus       132 ~~pFvl~r~~~g~fddi~si~Ws~DSr~l~----------~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~--  199 (893)
T KOG0291|consen  132 FNPFVLHRTYLGHFDDITSIDWSDDSRLLV----------TGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGA--  199 (893)
T ss_pred             cCcceEeeeecCCccceeEEEeccCCceEE----------eccccceEEEEEeccccccceEeccCCCcceEEEEecc--
Confidence            346788899999999999999999999998          457778899998754333   34678999999999999  


Q ss_pred             CccEEEEEeCCCcEEEEECCCCCC-------------------CCCc-----------eEEeccCCCCEEEEEEecCCCC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQD-------------------EDNG-----------IYLFRTHLGPISGIVTQQYCLS  296 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~-------------------~~~~-----------~~~~~~h~~~V~~l~~~~~~~~  296 (536)
                      +..-+.+-++||.+.+|.......                   .++.           .+-+......|++.+|++.. +
T Consensus       200 ~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~  278 (893)
T KOG0291|consen  200 NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-N  278 (893)
T ss_pred             CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-e
Confidence            888899999999999998872100                   0011           11122233679999999987 9


Q ss_pred             EEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECC-CeEEEEECCCCccceeEeccCCCeEEEE
Q 009380          297 KIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRKSATEWLLHEARINTID  374 (536)
Q Consensus       297 ~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~~h~~~i~~i~  374 (536)
                      .|+++-..|...+|.+..-.++.... .+.+|..+.|+..| ..|+.|+.. |.+.+|+.++...+...++|...+++++
T Consensus       279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~  357 (893)
T KOG0291|consen  279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA  357 (893)
T ss_pred             EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence            99999999999999999877766555 45899999999998 788888765 8999999999988889999999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380          375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~  454 (536)
                      ++||| +++|||+.||.|+|||...+-    ....+..|...|+.+.|+..|+.+++.|.||+|+.||+....+.+++..
T Consensus       358 YSpDg-q~iaTG~eDgKVKvWn~~Sgf----C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  358 YSPDG-QLIATGAEDGKVKVWNTQSGF----CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             ECCCC-cEEEeccCCCcEEEEeccCce----EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence            99998 799999999999999999853    4555668999999999999999999999999999999999888888854


Q ss_pred             cCCCCceeeeeEEEEcCCCCEEEEEcCCC-cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          455 NNQTGRWISSFRAIWGWDDSCVFIGNMTR-TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      ..+    +..-+++-.|.|..+++|+.|. .|.||++++|+.+..+.+|...+.  .++|+| .+..|++|++|.+|++|
T Consensus       433 P~p----~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs--~l~f~~-~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  433 PEP----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVS--GLSFSP-DGSLLASGSWDKTVRIW  505 (893)
T ss_pred             CCc----eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcce--eeEEcc-ccCeEEeccccceEEEE
Confidence            332    3333466788899999999985 499999999999999998777665  466777 46899999999999999


Q ss_pred             ec
Q 009380          534 TS  535 (536)
Q Consensus       534 ~~  535 (536)
                      |+
T Consensus       506 ~i  507 (893)
T KOG0291|consen  506 DI  507 (893)
T ss_pred             Ee
Confidence            96

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.3e-33  Score=267.53  Aligned_cols=284  Identities=25%  Similarity=0.384  Sum_probs=241.8

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      .++.|.++|++++|+|  ++.+|++++.+|.|.+|++.+    ......+..|...+..+.|+|++ ++|++++.||.|+
T Consensus         4 ~~~~h~~~i~~~~~~~--~~~~l~~~~~~g~i~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~   76 (289)
T cd00200           4 TLKGHTGGVTCVAFSP--DGKLLATGSGDGTIKVWDLET----GELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIR   76 (289)
T ss_pred             HhcccCCCEEEEEEcC--CCCEEEEeecCcEEEEEEeeC----CCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEE
Confidence            3468999999999999  899999999999999999987    55777888999999999999998 8999999999999


Q ss_pred             EEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          309 LMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       309 vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +||+.++.. .....+...+.++.|++++ .++++++.+|.|.+||+++++....+..|...|.+++|+|++ .++++++
T Consensus        77 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~  154 (289)
T cd00200          77 LWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSS  154 (289)
T ss_pred             EEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-CEEEEEc
Confidence            999998543 3445677799999999986 788888889999999999888888888899999999999975 6888888


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeE
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFR  466 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~  466 (536)
                      .|+.|++||++.++    ....+..|...+.++.|+|+++.+++++.|+.|++||+..++....+. +..    .+  ..
T Consensus       155 ~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~----~i--~~  224 (289)
T cd00200         155 QDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN----GV--NS  224 (289)
T ss_pred             CCCcEEEEEccccc----cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC----ce--EE
Confidence            89999999998753    344455788899999999999999999999999999998877666652 221    23  33


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      +.|++++.++++++.++.|++|++.+++.+..+..+....  ..+.|+| ++.+|++++.||.|++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i--~~~~~~~-~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSV--TSLAWSP-DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcE--EEEEECC-CCCEEEEecCCCeEEecC
Confidence            7799998889888889999999999888888887554333  4678888 468999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-32  Score=262.04  Aligned_cols=333  Identities=15%  Similarity=0.133  Sum_probs=262.9

Q ss_pred             ecccccceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      +.||...|.+|.|-|.--+         ++.+++.|+.|.+|+- .++-....+.|..-|+|+.|+|  ||.++++.+.|
T Consensus       143 i~GhSr~ins~~~KpsRPf---------Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP--DG~~Fat~gsD  211 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPF---------RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP--DGSRFATAGSD  211 (603)
T ss_pred             eeccceeEeeeeccCCCce---------EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC--CCCeEEEecCC
Confidence            5788889999988887643         3347899999999983 2233344577899999999999  99999999999


Q ss_pred             CcEEEEECCCCCCCCCceEEec---cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC----CceeEE
Q 009380          258 GNITFWNLDSQQDEDNGIYLFR---THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE----YAVFSL  330 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~----~~i~~l  330 (536)
                      |.|.+||-.+    ++.+..+.   +|.+.|.+|+|+||+ ..|+|+|.|.+++|||+.+..+...+...    ..-..+
T Consensus       212 gki~iyDGkt----ge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~  286 (603)
T KOG0318|consen  212 GKIYIYDGKT----GEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC  286 (603)
T ss_pred             ccEEEEcCCC----ccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE
Confidence            9999999988    66777776   899999999999999 99999999999999999998777665432    334455


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC-----
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP-----  405 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~-----  405 (536)
                      -|. .  ..|++.+.+|+|.+++...+..+..+.+|...|+++..+|++ .+|++|+.||.|.-||..++.....     
T Consensus       287 lWq-k--d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h  362 (603)
T KOG0318|consen  287 LWQ-K--DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGH  362 (603)
T ss_pred             EEe-C--CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccc
Confidence            565 2  478999999999999999999999999999999999999988 7999999999999999877531100     


Q ss_pred             --------------------------------------------Ccce--------------------e--------ecc
Q 009380          406 --------------------------------------------EPMK--------------------V--------LSH  413 (536)
Q Consensus       406 --------------------------------------------~~~~--------------------~--------~~~  413 (536)
                                                                  ++..                    +        ..-
T Consensus       363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~  442 (603)
T KOG0318|consen  363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI  442 (603)
T ss_pred             cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence                                                        0000                    0        001


Q ss_pred             cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      .....+++++|+++.+++|+.|+.|+||.+............... ..++.  ++||||+.||++|...+.|.+||+.+.
T Consensus       443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~-a~iT~--vaySpd~~yla~~Da~rkvv~yd~~s~  519 (603)
T KOG0318|consen  443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR-AAITD--VAYSPDGAYLAAGDASRKVVLYDVASR  519 (603)
T ss_pred             ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc-CCceE--EEECCCCcEEEEeccCCcEEEEEcccC
Confidence            223567889999999999999999999999875543322111111 12343  779999999999999999999999998


Q ss_pred             ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          494 RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       494 ~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +.......-|...+ ..++|+|++ .+||+|+-|-.|.||+++
T Consensus       520 ~~~~~~w~FHtakI-~~~aWsP~n-~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  520 EVKTNRWAFHTAKI-NCVAWSPNN-KLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             ceecceeeeeeeeE-EEEEeCCCc-eEEEeccccceEEEEEcc
Confidence            76433334344444 468999954 899999999999999985

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.2e-34  Score=253.89  Aligned_cols=289  Identities=13%  Similarity=0.208  Sum_probs=251.0

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc--cccccCCceEEEEEEecCCccEEEEEe
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN--IARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~--~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      .+.+|...|..++|+|+|..++          ++++|..|.||+...+.+.  +.++|.+.|..+.|.+  |+..|++++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~a----------SgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~--d~s~i~S~g  109 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFA----------SGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR--DGSHILSCG  109 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEe----------ecCCcceEEEEeccccccceeeeccccceeEeeeecc--CCCEEEEec
Confidence            4689999999999999999999          5699999999997555443  5689999999999999  999999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~  335 (536)
                      .|.+|+.||+++    ++.++.+++|..-|+.+.-+.-|+.++.+++.|+++++||+++......+....+++++.|...
T Consensus       110 tDk~v~~wD~~t----G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~  185 (338)
T KOG0265|consen  110 TDKTVRGWDAET----GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDT  185 (338)
T ss_pred             CCceEEEEeccc----ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccc
Confidence            999999999999    8899999999999999997777878899999999999999999988888888899999999988


Q ss_pred             CCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc--
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH--  413 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~--  413 (536)
                      + ..+.+|+-|+.|++||++.+..++.+.+|.+.|+.|..+|+| .++.+-+.|.++++||++-.......+..+.+|  
T Consensus       186 s-~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~h  263 (338)
T KOG0265|consen  186 S-DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIH  263 (338)
T ss_pred             c-cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchh
Confidence            7 789999999999999999999999999999999999999988 699999999999999999765444333334443  


Q ss_pred             c--CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380          414 K--RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       414 ~--~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d  489 (536)
                      .  .....++|+|++..+.+|+.|..+++||......+..++     |....+..+.|+|...+|.+++.|.+|++=.
T Consensus       264 nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp-----Gh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  264 NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP-----GHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC-----CcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            2  344578999999999999999999999987766665553     2233455588999999999999999988743

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.9e-34  Score=259.58  Aligned_cols=294  Identities=15%  Similarity=0.200  Sum_probs=259.7

Q ss_pred             ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCcc
Q 009380          171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVR  249 (536)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~  249 (536)
                      .++++...+.+|...|..+.|.|+.-+++.          ...|++|++||..... ..-+++|.+.|.+|+|+.  .|+
T Consensus        96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~----------as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a--~Gk  163 (406)
T KOG0295|consen   96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVS----------ASEDATIKVFDTETGELERSLRGHTDSVFDISFDA--SGK  163 (406)
T ss_pred             CCCCchhhhhccccceeeeeeccCceEEEE----------ecCCceEEEEEccchhhhhhhhccccceeEEEEec--Ccc
Confidence            456677788999999999999999998884          4678899999985443 455799999999999999  999


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCcee
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVF  328 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~  328 (536)
                      +|++++.|=.+.+||.++.   ..++....+|...|.++.|-|.| ++|++++.|.+|+.|++.++-+...+ +|..-|.
T Consensus       164 ~l~tcSsDl~~~LWd~~~~---~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr  239 (406)
T KOG0295|consen  164 YLATCSSDLSAKLWDFDTF---FRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR  239 (406)
T ss_pred             EEEecCCccchhheeHHHH---HHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEE
Confidence            9999999999999999864   57788899999999999999999 99999999999999999999777655 6788999


Q ss_pred             EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC--------------CCCEEEEEeCCCcEEE
Q 009380          329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR--------------NPNIMATSSTDGTACI  394 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~--------------~~~~l~s~s~dg~i~i  394 (536)
                      .++.+.+| .++++++.|.+|++|-+.++++...+..|+.+|.+++|.|.              +.+++.+++.|++|++
T Consensus       240 ~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~  318 (406)
T KOG0295|consen  240 MVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKI  318 (406)
T ss_pred             EEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEE
Confidence            99999998 89999999999999999999999999999999999999874              2369999999999999


Q ss_pred             EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380          395 WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS  474 (536)
Q Consensus       395 wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  474 (536)
                      ||+.++.    .++.+.+|...|..++|+|.|+||+++..|+++++||+.+.++..++..   ....+++  ..|..+-.
T Consensus       319 wdv~tg~----cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~a---h~hfvt~--lDfh~~~p  389 (406)
T KOG0295|consen  319 WDVSTGM----CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEA---HEHFVTS--LDFHKTAP  389 (406)
T ss_pred             EeccCCe----EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCC---CcceeEE--EecCCCCc
Confidence            9999974    6677789999999999999999999999999999999999998888752   2234444  56788888


Q ss_pred             EEEEEcCCCcEEEEcC
Q 009380          475 CVFIGNMTRTVEVISP  490 (536)
Q Consensus       475 ~l~~gs~dg~I~v~d~  490 (536)
                      ++++|+-|..+++|..
T Consensus       390 ~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  390 YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eEEeccccceeeeeec
Confidence            9999999999999964

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-33  Score=240.44  Aligned_cols=284  Identities=17%  Similarity=0.197  Sum_probs=241.7

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..++..+.++|..+.|+-  +|+|.++++.|.+|++|+...    +..++++.+|...|..++.+.|+ ..|++|+.|..
T Consensus        10 ~~~l~~~qgaV~avryN~--dGnY~ltcGsdrtvrLWNp~r----g~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~   82 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNV--DGNYCLTCGSDRTVRLWNPLR----GALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKA   82 (307)
T ss_pred             ceeecccccceEEEEEcc--CCCEEEEcCCCceEEeecccc----cceeeeecCCCceeeeccccccc-cccccCCCCce
Confidence            345688999999999999  999999999999999999987    88999999999999999999998 99999999999


Q ss_pred             EEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC--ccceeEeccCCCeEEEEEecCCCCEE
Q 009380          307 IRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR--KSATEWLLHEARINTIDFNPRNPNIM  383 (536)
Q Consensus       307 I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~~i~~i~~~p~~~~~l  383 (536)
                      |.+||+++|+... +.+|...|..+.|+.+. ..+++|+.|..+++||-++.  ++++.+....+.|.+|....   +.+
T Consensus        83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~---heI  158 (307)
T KOG0316|consen   83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE---HEI  158 (307)
T ss_pred             EEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc---cEE
Confidence            9999999998765 45789999999999987 89999999999999999864  66888888899999999984   689


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      ++|+.||+++.||+|.+.    .  .......+|++++|+++++..+.++.|++|++.|-.+++.+..+......   -.
T Consensus       159 vaGS~DGtvRtydiR~G~----l--~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~---ey  229 (307)
T KOG0316|consen  159 VAGSVDGTVRTYDIRKGT----L--SSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM---EY  229 (307)
T ss_pred             EeeccCCcEEEEEeecce----e--ehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc---ee
Confidence            999999999999999974    2  22234568999999999999999999999999999999988877533222   23


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      -+.+++......+++|+.||.|++||+....++..+.. +..++...+++||.. ..|+++... .+.+|
T Consensus       230 kldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~-~~f~~A~~~-~~~~~  296 (307)
T KOG0316|consen  230 KLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTM-DDFITATGH-GDLFW  296 (307)
T ss_pred             eeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-CCceeEEeeecccCc-cceeEecCC-ceece
Confidence            34577788888999999999999999999988888875 444545789999976 445555543 34555

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.2e-33  Score=256.63  Aligned_cols=294  Identities=15%  Similarity=0.194  Sum_probs=254.8

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccccCCceEEEEEEecCCccEEE
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      .+-..+.||..+|.|+.+.|-...++          ++++|+++.|||+...... .+.+|-..|..+++++  -..||+
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~----------tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~--rHpYlF  209 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFA----------TGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK--RHPYLF  209 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEE----------ecCCCceeEEEEcccCeEEEeecchhheeeeeeecc--cCceEE
Confidence            34567899999999999999999999          5699999999999765543 3567999999999999  889999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEE
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLS  331 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~  331 (536)
                      +++.|++|+.||+..    .+.++.+.+|-..|.|++.+|.- +.|++|+.|.+++|||+++.... .+.+|..+|.++.
T Consensus       210 s~gedk~VKCwDLe~----nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~  284 (460)
T KOG0285|consen  210 SAGEDKQVKCWDLEY----NKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVM  284 (460)
T ss_pred             EecCCCeeEEEechh----hhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEE
Confidence            999999999999998    78999999999999999999998 99999999999999999987554 4557999999999


Q ss_pred             ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380          332 QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      +.|.+ -.+++|+.|++|++||++.++...++..|...|.+++.+|.. +.||+++.| .|+-|++..+.    .+..+.
T Consensus       285 ~~~~d-pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~----f~~nls  357 (460)
T KOG0285|consen  285 CQPTD-PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGE----FLQNLS  357 (460)
T ss_pred             eecCC-CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccc----hhhccc
Confidence            99988 589999999999999999999999999999999999999966 789999877 59999999864    555677


Q ss_pred             cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc---eeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR---WISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      +|..-|++++.+.|| ++++|+..|.|.+||.+++...+......+.|.   ...++..+|...|..|++|..|.+|++|
T Consensus       358 gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~  436 (460)
T KOG0285|consen  358 GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY  436 (460)
T ss_pred             cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence            999999999999776 688999999999999998766655532223222   2234668899999999999999999999


Q ss_pred             cCCc
Q 009380          489 SPAQ  492 (536)
Q Consensus       489 d~~~  492 (536)
                      .-..
T Consensus       437 keDe  440 (460)
T KOG0285|consen  437 KEDE  440 (460)
T ss_pred             eccc
Confidence            7543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6e-34  Score=283.77  Aligned_cols=246  Identities=20%  Similarity=0.311  Sum_probs=216.5

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC---------------------------CCCCceEEeccCCCCEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ---------------------------DEDNGIYLFRTHLGPIS  286 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~---------------------------~~~~~~~~~~~h~~~V~  286 (536)
                      ...++|..|++  |+.+||.|-.|..|++|.+....                           ........+.+|.++|.
T Consensus       378 ~~~v~ca~fSd--dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy  455 (707)
T KOG0263|consen  378 YQGVTCAEFSD--DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY  455 (707)
T ss_pred             CCcceeEeecC--CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence            56799999999  99999999999999999987310                           01233456889999999


Q ss_pred             EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380          287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                      .+.|+|+. ++|++||.|++||+|.+.+......+ +|..+|+++.|+|.| .++++++.|++-++|......+++.+.+
T Consensus       456 g~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~PlRifag  533 (707)
T KOG0263|consen  456 GCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKPLRIFAG  533 (707)
T ss_pred             eeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCchhhhcc
Confidence            99999998 99999999999999999998665544 788999999999998 8999999999999999999999999999


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      |...|.|+.|||.. +++++||.|.+|++||+.++.    .+..+.+|.++|.+++|||+|.+|++|+.||.|.|||+.+
T Consensus       534 hlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~  608 (707)
T KOG0263|consen  534 HLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN  608 (707)
T ss_pred             cccccceEEECCcc-cccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC
Confidence            99999999999955 899999999999999999975    4556669999999999999999999999999999999999


Q ss_pred             CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      +..+..+..+.  +   +...+.||.+|..|++|+.|++|++||+..-
T Consensus       609 ~~~v~~l~~Ht--~---ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  609 GSLVKQLKGHT--G---TIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             Ccchhhhhccc--C---ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            98887774332  2   2333779999999999999999999998653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=8.6e-32  Score=295.39  Aligned_cols=291  Identities=18%  Similarity=0.212  Sum_probs=227.7

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..|.+.|++++|+|  ++++||+|+.|+.|+||++......    ......+. +...|.+++|++....+|++++.||+
T Consensus       480 ~~~~~~V~~i~fs~--dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        480 LNSSNLVCAIGFDR--DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             cCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            45899999999999  9999999999999999998642100    11223333 34679999999865489999999999


Q ss_pred             EEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          307 IRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       307 I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      |++||+.++.... +..|...|++++|+|.++.+|++|+.||.|++||++++..+..+.. ...|.++.|++.++++|++
T Consensus       557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAF  635 (793)
T ss_pred             EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEE
Confidence            9999999876544 4478899999999985558999999999999999999988888874 4689999997655689999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC------CcceEEeccCCCC
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF------ENTSMIHHNNQTG  459 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~------~~~~~~~~~~~~~  459 (536)
                      |+.||.|++||+++..   .......+|...|.++.|. ++.+|++++.|++|+|||+...      ..+..+..   ..
T Consensus       636 gs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g---h~  708 (793)
T PLN00181        636 GSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG---HT  708 (793)
T ss_pred             EeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC---CC
Confidence            9999999999998743   1234556899999999997 6789999999999999999743      23333321   11


Q ss_pred             ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC-----------CceeeeeeeEeecCCCCCEEEEEccCC
Q 009380          460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS-----------PYISAIPCRFHAHPHQVGTLAGATGGG  528 (536)
Q Consensus       460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~-----------~~~~~~~~~~~~~p~~~~~lasgs~Dg  528 (536)
                      ..+..  +.|++++.+|++|+.|+.|.+|+......+..+..           .+.......++|+| ++.+|++|+.||
T Consensus       709 ~~i~~--v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG  785 (793)
T PLN00181        709 NVKNF--VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTG  785 (793)
T ss_pred             CCeeE--EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCC
Confidence            12232  66899999999999999999999876544322211           11122335788998 569999999999


Q ss_pred             eEEEEec
Q 009380          529 QVYVWTS  535 (536)
Q Consensus       529 ~v~iW~~  535 (536)
                      .|+||++
T Consensus       786 ~I~i~~~  792 (793)
T PLN00181        786 NIKILEM  792 (793)
T ss_pred             cEEEEec
Confidence            9999986

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.6e-32  Score=295.02  Aligned_cols=294  Identities=13%  Similarity=0.113  Sum_probs=236.1

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---c-----ccccccCCceEEEEEEecCCccEE
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---E-----NIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~-----~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      ..|.+.|.++.|+++|++++          +++.|+.|+||+.....   .     .....+...|.+++|+|. ++.+|
T Consensus       480 ~~~~~~V~~i~fs~dg~~la----------tgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l  548 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEFFA----------TAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY-IKSQV  548 (793)
T ss_pred             cCCCCcEEEEEECCCCCEEE----------EEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccC-CCCEE
Confidence            45889999999999999988          45889999999964211   0     011123568999999984 47899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLS  331 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~  331 (536)
                      ++++.||+|+|||+.+    ...+..+.+|.+.|++++|+|..+.+|++|+.||+|++||+.++.....+.+...+.++.
T Consensus       549 as~~~Dg~v~lWd~~~----~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~  624 (793)
T PLN00181        549 ASSNFEGVVQVWDVAR----SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQ  624 (793)
T ss_pred             EEEeCCCeEEEEECCC----CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEE
Confidence            9999999999999987    677888999999999999997443899999999999999999887766666667899999


Q ss_pred             ecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC--CCCcc
Q 009380          332 QQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD--KPEPM  408 (536)
Q Consensus       332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~--~~~~~  408 (536)
                      |++.++.+|++|+.||.|++||+++++ .+..+.+|...|.++.|.+ + .+|++++.|++|++||++.....  ...+.
T Consensus       625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~  702 (793)
T PLN00181        625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-S-STLVSSSTDNTLKLWDLSMSISGINETPLH  702 (793)
T ss_pred             EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-C-CEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence            976555899999999999999999876 4677889999999999974 4 68999999999999999864211  12334


Q ss_pred             eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--------CCceeeeeEEEEcCCCCEEEEEc
Q 009380          409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--------TGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                      .+.+|...+.+++|+|++.+|++|+.|+.|++|+.....+...+.....        ......+..++|++++.+|++|+
T Consensus       703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~  782 (793)
T PLN00181        703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN  782 (793)
T ss_pred             EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence            5568999999999999999999999999999999876554433221100        01111234588999999999999


Q ss_pred             CCCcEEEEcC
Q 009380          481 MTRTVEVISP  490 (536)
Q Consensus       481 ~dg~I~v~d~  490 (536)
                      .+|.|+||++
T Consensus       783 ~dG~I~i~~~  792 (793)
T PLN00181        783 STGNIKILEM  792 (793)
T ss_pred             CCCcEEEEec
Confidence            9999999986

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-32  Score=265.14  Aligned_cols=284  Identities=17%  Similarity=0.195  Sum_probs=236.3

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      +..+..+.+.|.++.++|..-.+..          +-+.|.|.||+.+.... ....+..-+|.+..|-+  -.+++++|
T Consensus         6 krk~~~rSdRVKsVd~HPtePw~la----------~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia--RknWiv~G   73 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEPWILA----------ALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA--RKNWIVTG   73 (794)
T ss_pred             hhHhhccCCceeeeecCCCCceEEE----------eeecCeeEEEecccceeeeeeeecccchhhheeee--ccceEEEe
Confidence            3445668899999999999987763          35788999999754432 22345578999999999  88999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEe
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQ  332 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~  332 (536)
                      +.|.+|+||+..+    ...+..|..|...|.+|+.+|.. .+++|+|.|-+|++||.+.+  ......+|..-|.+++|
T Consensus        74 sDD~~IrVfnynt----~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~f  148 (794)
T KOG0276|consen   74 SDDMQIRVFNYNT----GEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAF  148 (794)
T ss_pred             cCCceEEEEeccc----ceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEe
Confidence            9999999999998    88999999999999999999998 99999999999999999986  33445589999999999


Q ss_pred             cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380          333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNP-NIMATSSTDGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~-~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      +|.+++.+++++.|++|++|.+.+..+..++.+|...|+||++-+.|. -+|++|+.|.+|+|||..+..    .+..+.
T Consensus       149 nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~----CV~TLe  224 (794)
T KOG0276|consen  149 NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS----CVQTLE  224 (794)
T ss_pred             cCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH----HHHHhh
Confidence            999999999999999999999999999999999999999999998442 399999999999999999843    445566


Q ss_pred             cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      +|...|+.+.|+|.-..|++|+.||+++||+..+.+...++....   ..+.+  +.-.+.+..+++|..+|.|
T Consensus       225 GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl---eRvW~--I~~~k~~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  225 GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL---ERVWC--IAAHKGDGKIAVGFDEGSV  293 (794)
T ss_pred             cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC---ceEEE--EeecCCCCeEEEeccCCcE
Confidence            899999999999999999999999999999988776665553221   12222  3334455556666555544

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-32  Score=238.53  Aligned_cols=284  Identities=19%  Similarity=0.300  Sum_probs=228.4

Q ss_pred             eEEEEEEecCCccEEEEE------eCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          237 ITQMKFLPCSDVRMVVAG------SKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg------~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      =+++.|+|..++++.++.      ...|.+.|.++..    ...+..+.  .-...+..++|++...+.+++++.||+++
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~----~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLr   86 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD----PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLR   86 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCC----CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEE
Confidence            368899997555444333      2358899999874    23333222  24577999999999889999999999999


Q ss_pred             EEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          309 LMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       309 vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      +||+...  .+.....|...|.++.|++.....+++++.||+|++||...++.+.++.+|...|....|+|..+++|+++
T Consensus        87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen   87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence            9996532  33445578999999999998878899999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcc-eEEeccCCCCceeee
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT-SMIHHNNQTGRWISS  464 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~  464 (536)
                      |.|+++++||++...    ..+.+..|...|.++.|+. +.+.++||+.|+.|++||+++.+.. ..+     .++...+
T Consensus       167 Sgd~~l~lwdvr~~g----k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL-----~gh~~AV  237 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPG----KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL-----NGHGLAV  237 (311)
T ss_pred             cCCceEEEEEecCCC----ceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-----cCCceEE
Confidence            999999999999852    4555778999999999998 7788999999999999999987633 222     2233455


Q ss_pred             eEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          465 FRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       465 ~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      -++.|||. ...|++++.|-+++|||...+.....-..+|..-+ +.+.|++.++.++|+++.|+.++||+
T Consensus       238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv-~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFV-CGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEE-eccccccccCceeeecccccceeeec
Confidence            56789986 45699999999999999985544333333454444 67889888999999999999999997

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.6e-31  Score=257.20  Aligned_cols=285  Identities=20%  Similarity=0.264  Sum_probs=240.0

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      ..+.+|.+.|.++.++++++.++..          ..+|.+.+|++... .......|...+..+.|+|  ++++|++++
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~----------~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~   70 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATG----------SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA--DGTYLASGS   70 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEe----------ecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC--CCCEEEEEc
Confidence            3567999999999999999988844          56889999998543 2344567888999999999  889999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecC
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQP  334 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~  334 (536)
                      .+|.|.+|++..    ...+..+..|...|.++.|++++ .++++++.||.|.+||+.++.....+ .|...+.+++|+|
T Consensus        71 ~~~~i~i~~~~~----~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~  145 (289)
T cd00200          71 SDKTIRLWDLET----GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP  145 (289)
T ss_pred             CCCeEEEEEcCc----ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence            999999999987    56777888999999999999997 88888888999999999976655444 4778999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      ++ .++++++.+|.|.+||+++++.+..+..|...|.++.|+|++ ..+++++.|+.|++||++.++    .......|.
T Consensus       146 ~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~  219 (289)
T cd00200         146 DG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK----CLGTLRGHE  219 (289)
T ss_pred             cC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc----eecchhhcC
Confidence            86 788888879999999999999888998999999999999987 578888889999999998743    233333788


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d  489 (536)
                      ..+.++.|+|++.++++++.|+.|++||+.+++....+...   ..  ....+.|++++.+|++++.|+.|++|+
T Consensus       220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~---~~--~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH---TN--SVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc---CC--cEEEEEECCCCCEEEEecCCCeEEecC
Confidence            89999999999888888888999999999887766666421   11  233477999999999999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8e-32  Score=236.71  Aligned_cols=289  Identities=13%  Similarity=0.156  Sum_probs=235.0

Q ss_pred             cccceecccccceeeeecCCC-CcccccccccccccccccccceEEeccccc----Cccc-cccccCCceEEEEEEecCC
Q 009380          174 NLGFVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTL----KPEN-IARIMPGRITQMKFLPCSD  247 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~----~~~~-~~~~~~~~I~~v~~~p~~~  247 (536)
                      .+...+.+|.+.+..+.++|- |.++++          ++.|..|++|+...    .... +-.+|...|.+++|+|  .
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAs----------cg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp--~   72 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILAS----------CGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP--H   72 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEe----------ecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC--C
Confidence            344568999999999999999 888884          48888999999862    1111 2246899999999999  9


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eEEEeecC
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDLVYSS  323 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~~~~~  323 (536)
                      |++|++|+.|.++.||.-...+  .+++..+.+|...|.|++|+++| ++|++|+.|++|-||.+..+    ....+..|
T Consensus        73 g~~La~aSFD~t~~Iw~k~~~e--fecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKEDGE--FECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             CcEEEEeeccceEEEeecCCCc--eeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            9999999999999999877544  78899999999999999999999 99999999999999998753    22345679


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCC---CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      ...|..+.|+|.. .+|++++.|.+|++|+-..   -.+++++.+|...|.+++|++.| ..|++++.|++++||-+...
T Consensus       150 tqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  150 TQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             cccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC
Confidence            9999999999987 7999999999999998763   35688999999999999999988 78999999999999987642


Q ss_pred             CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC--CcceEE--eccCCCCceeeeeEEEEcCC-CCE
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF--ENTSMI--HHNNQTGRWISSFRAIWGWD-DSC  475 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~--~~~~~~--~~~~~~~~~~~~~~~~~s~~-g~~  475 (536)
                              -...|...++.+.|. +| .|++++.|+.|+||.-...  .+...+  .....++..+..  +.|.|. ...
T Consensus       228 --------~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs--V~w~p~~~~~  295 (312)
T KOG0645|consen  228 --------LSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS--VQWNPKVSNR  295 (312)
T ss_pred             --------cchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce--EEEcCCCCCc
Confidence                    123478899999998 44 6999999999999976532  111111  112222323333  789995 678


Q ss_pred             EEEEcCCCcEEEEcCC
Q 009380          476 VFIGNMTRTVEVISPA  491 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~  491 (536)
                      |++|+.||.|++|.+.
T Consensus       296 L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  296 LASGGDDGIVNFWELE  311 (312)
T ss_pred             eeecCCCceEEEEEec
Confidence            9999999999999764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.4e-32  Score=236.03  Aligned_cols=287  Identities=16%  Similarity=0.199  Sum_probs=240.6

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      -.+.|...|.+|+|+.  +|..|++|+.|+++.+|+++...  ...-....+|.+.|-.++|+|..+++|++++.|.+|+
T Consensus        15 ~~~~~~~~v~Sv~wn~--~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir   90 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNC--DGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR   90 (313)
T ss_pred             HhhhhhhcceEEEEcc--cCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence            3578889999999999  99999999999999999998631  2333467889999999999999999999999999999


Q ss_pred             EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      +||++.+++.........-.-+.|+|++ .++++++.|..|.+.|.++.+.+...+ ....++-++|+.++ ++|+....
T Consensus        91 ~wd~r~~k~~~~i~~~~eni~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~n-d~Fflt~G  167 (313)
T KOG1407|consen   91 IWDIRSGKCTARIETKGENINITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSN-DLFFLTNG  167 (313)
T ss_pred             EEEeccCcEEEEeeccCcceEEEEcCCC-CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCC-CEEEEecC
Confidence            9999999988887777777789999999 899999999999999999988776665 55677889999766 45555555


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      .|+|.|......+    .+..+..|.....||.|+|+|++||+|+.|..+.+||+...-+...+....-.   +..  +.
T Consensus       168 lG~v~ILsypsLk----pv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp---VRT--lS  238 (313)
T KOG1407|consen  168 LGCVEILSYPSLK----PVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP---VRT--LS  238 (313)
T ss_pred             CceEEEEeccccc----cccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc---eEE--EE
Confidence            7999999988764    56677799999999999999999999999999999999988888887544332   333  66


Q ss_pred             EcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC---------CeEEEEec
Q 009380          469 WGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG---------GQVYVWTS  535 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D---------g~v~iW~~  535 (536)
                      ||.+|++|++|+.|..|.|=++.+|..+..++...  .. ..++|||.. .+||-+++|         |.|++|-+
T Consensus       239 FS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~--~t-~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  239 FSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG--PT-FTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             eccCcceeeccCccceEEeEecccCCeEEEeeccC--Cc-eeEEecCCC-ceeeEEecCCCCccccccceeEEecC
Confidence            99999999999999999999999999999887432  22 468999965 788877644         66777643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1e-31  Score=274.74  Aligned_cols=290  Identities=14%  Similarity=0.177  Sum_probs=240.7

Q ss_pred             cceeccc-ccceeeeecCCCCcccccccccccccccccccceEEecccccCc---cccccccCCceEEEEEEecCCccEE
Q 009380          176 GFVIKDE-FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       176 ~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      ...+.+| ...|.++.|+++|+.++..          ..++.+.+|+.....   ......|...|++++|+|  ++.++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~----------~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~--d~~~l  218 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAA----------SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP--DGSYL  218 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEc----------cCCCcEEEeecccccchhhccccccccceeeeEECC--CCcEE
Confidence            4445554 7999999999999998854          677889999873333   333467999999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSL  330 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l  330 (536)
                      ++|+.|++|+|||+...   ...+..+.+|...|++++|+|++ +++++|+.|++|++||++++++.. +..|...|+++
T Consensus       219 ~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~  294 (456)
T KOG0266|consen  219 LSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGL  294 (456)
T ss_pred             EEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEE
Confidence            99999999999999432   57889999999999999999999 999999999999999999977655 45688999999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCc--cceeEeccCCC--eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRK--SATEWLLHEAR--INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE  406 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~--i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~  406 (536)
                      +|++++ ++|++++.|+.|++||+.++.  ++..+..+...  +++++|+|++ .++++++.|+.+++||++.+.    .
T Consensus       295 ~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~----~  368 (456)
T KOG0266|consen  295 AFSPDG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK----S  368 (456)
T ss_pred             EECCCC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc----c
Confidence            999999 899999999999999999998  56777766655  9999999977 799999999999999999864    4


Q ss_pred             cceeecccCc---eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc--C
Q 009380          407 PMKVLSHKRA---VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN--M  481 (536)
Q Consensus       407 ~~~~~~~~~~---v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs--~  481 (536)
                      +....+|...   +.+..+++.+.++++|+.|+.|.+||+.++..+..+....    ......+.|++...++++++  .
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~----~~~~~~~~~~~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS----KAAVSDLSSHPTENLIASSSFEG  444 (456)
T ss_pred             eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC----CCceeccccCCCcCeeeecCcCC
Confidence            4445556553   4455567789999999999999999999877776664331    11233477899999999998  6


Q ss_pred             CCcEEEEcCC
Q 009380          482 TRTVEVISPA  491 (536)
Q Consensus       482 dg~I~v~d~~  491 (536)
                      |+.|++|...
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            8889999754

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-31  Score=234.01  Aligned_cols=286  Identities=14%  Similarity=0.141  Sum_probs=240.1

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      .+++|..+|+.+.|+.  +|.+|+++++|.++.||-..+    ++.+-++.+|++.|+|+...-+. ..+++|+.|.+++
T Consensus         5 ~l~GHERplTqiKyN~--eGDLlFscaKD~~~~vw~s~n----GerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR--EGDLLFSCAKDSTPTVWYSLN----GERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAK   77 (327)
T ss_pred             ccccCccccceEEecC--CCcEEEEecCCCCceEEEecC----CceeeeecCCCceEEEEEecCCc-ceeeeccccceeE
Confidence            4688999999999999  999999999999999998876    78999999999999999999988 9999999999999


Q ss_pred             EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-----CCeEEEEECC-------CCccceeEeccCCCeEEEEEe
Q 009380          309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-----QGGLNIWDVR-------SRKSATEWLLHEARINTIDFN  376 (536)
Q Consensus       309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-----dg~i~i~d~~-------~~~~~~~~~~h~~~i~~i~~~  376 (536)
                      +||+++|+.........+|..+.|++++ +++++.+.     .+.|.++|++       ..++...+..+.+.++.+-|.
T Consensus        78 LWDv~tGk~la~~k~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   78 LWDVETGKQLATWKTNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EEEcCCCcEEEEeecCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            9999999999999999999999999998 67666654     3689999998       345677788889999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380          377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  456 (536)
                      |.+ .+|++|..||.|.+||++++.   ..+.....|...|+.+.++|+..+++|+|.|.+-++||+.+.+.+.++....
T Consensus       157 ~l~-~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~  232 (327)
T KOG0643|consen  157 PLG-ETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER  232 (327)
T ss_pred             ccC-CEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc
Confidence            987 799999999999999999974   2333334689999999999999999999999999999999999998886544


Q ss_pred             CCCceeeeeEEEEcCCCCEEEEEcCCCcEE--------------EEcCCccccceeccCCceeeeeeeEeecCCCCCEEE
Q 009380          457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVE--------------VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA  522 (536)
Q Consensus       457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~--------------v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~la  522 (536)
                      +    +.+  ++++|....++.|+......              +|++-..+.+..+++|.....  .+++|| +|...+
T Consensus       233 P----vN~--aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN--svAfhP-dGksYs  303 (327)
T KOG0643|consen  233 P----VNT--AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN--SVAFHP-DGKSYS  303 (327)
T ss_pred             c----ccc--eecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc--eeEECC-CCcccc
Confidence            3    333  66788777777765443222              223323345666777665554  789999 689999


Q ss_pred             EEccCCeEEEEec
Q 009380          523 GATGGGQVYVWTS  535 (536)
Q Consensus       523 sgs~Dg~v~iW~~  535 (536)
                      +|++||.|+|.-.
T Consensus       304 SGGEDG~VR~h~F  316 (327)
T KOG0643|consen  304 SGGEDGYVRLHHF  316 (327)
T ss_pred             cCCCCceEEEEEe
Confidence            9999999998654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.2e-33  Score=252.94  Aligned_cols=269  Identities=16%  Similarity=0.241  Sum_probs=223.9

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      ....|+|+.+    |...+++|..|++|+|||..+    ..+...+.+|++.|.|+.|..   ..|++||.|.+|++||+
T Consensus       196 ~skgVYClQY----DD~kiVSGlrDnTikiWD~n~----~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv  264 (499)
T KOG0281|consen  196 NSKGVYCLQY----DDEKIVSGLRDNTIKIWDKNS----LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDV  264 (499)
T ss_pred             cCCceEEEEe----cchhhhcccccCceEEecccc----HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEec
Confidence            4678999999    557899999999999999997    788999999999999999965   68999999999999999


Q ss_pred             CCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          313 EKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       313 ~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      +++++.. ++.|...|..+.|+.   +++++++.|.++.+||+.....   .+.+.+|...|+.+.|..   .++++++.
T Consensus       265 ~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASg  338 (499)
T KOG0281|consen  265 NTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASG  338 (499)
T ss_pred             cCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecC
Confidence            9998765 457789999999984   5899999999999999987653   456779999999999974   69999999


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      |.+|++|++.++.    .+..+.+|...|.|+.+  .|+++++|+.|.+|++||+..+.++..+.......   .+  +.
T Consensus       339 DRTikvW~~st~e----fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv---Rc--iR  407 (499)
T KOG0281|consen  339 DRTIKVWSTSTCE----FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV---RC--IR  407 (499)
T ss_pred             CceEEEEecccee----eehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhh---hh--ee
Confidence            9999999999964    55666799999999988  58999999999999999999999998885433332   22  22


Q ss_pred             EcCCCCEEEEEcCCCcEEEEcCCccccc---------eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          469 WGWDDSCVFIGNMTRTVEVISPAQRRSV---------ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~---------~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      |  |.+.+++|..||.|+|||+..+...         .++.. |.+.+ ..+.|   |...+++++.|.+|.|||..
T Consensus       408 F--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~-hsgRV-FrLQF---D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  408 F--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVE-HSGRV-FRLQF---DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             e--cCceeeeccccceEEEEecccccCCcccccchHHHhhhh-cccee-EEEee---cceEEEeccCCCeEEEEEcC
Confidence            3  5678999999999999999876432         22222 22222 46677   56889999999999999963

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.1e-31  Score=246.02  Aligned_cols=282  Identities=17%  Similarity=0.270  Sum_probs=233.7

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC--CCEEEEEECCCeE
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC--LSKIFTSCYDGLI  307 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~I  307 (536)
                      .-.|++.|.+|...+    .+|++|++||.+++|+..     ++....+.+|+++|.+++|.-.+  ...|++++.|.++
T Consensus       101 ~~~hdDWVSsv~~~~----~~IltgsYDg~~riWd~~-----Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGAS----KWILTGSYDGTSRIWDLK-----GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             cccchhhhhhhcccC----ceEEEeecCCeeEEEecC-----CceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            356899999998865    799999999999999998     78999999999999988886544  1359999999999


Q ss_pred             EEEECCCCeE-----EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-------------------------C
Q 009380          308 RLMDAEKEVF-----DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-------------------------R  357 (536)
Q Consensus       308 ~vwd~~~~~~-----~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-------------------------~  357 (536)
                      ++|-++.+..     ....+|...|-+++..+++ ..+++|+.|.+|.||+..+                         +
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r  250 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR  250 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence            9999987643     2233899999999999998 8999999999999999321                         1


Q ss_pred             ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc
Q 009380          358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT  437 (536)
Q Consensus       358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~  437 (536)
                      .++.++.+|..+|.+|.|++ . ..+++++.|.+|+.||+.++.     ..........++++.++|..++|++|+.|..
T Consensus       251 ~P~vtl~GHt~~Vs~V~w~d-~-~v~yS~SwDHTIk~WDletg~-----~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~  323 (423)
T KOG0313|consen  251 TPLVTLEGHTEPVSSVVWSD-A-TVIYSVSWDHTIKVWDLETGG-----LKSTLTTNKSLNCISYSPLSKLLASGSSDRH  323 (423)
T ss_pred             CceEEecccccceeeEEEcC-C-CceEeecccceEEEEEeeccc-----ceeeeecCcceeEeecccccceeeecCCCCc
Confidence            24567789999999999998 3 589999999999999999964     3444556788999999999999999999999


Q ss_pred             EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE-EEEEcCCCcEEEEcCCccc-cceeccCCceeeeeeeEeecC
Q 009380          438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC-VFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I~v~d~~~~~-~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      |++||.+++.-.........+..|+..  +.|+|...+ |++|+.|+++++||+++.. +++.+.+|...+.  ++.|. 
T Consensus       324 irl~DPR~~~gs~v~~s~~gH~nwVss--vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl--~vdW~-  398 (423)
T KOG0313|consen  324 IRLWDPRTGDGSVVSQSLIGHKNWVSS--VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL--SVDWN-  398 (423)
T ss_pred             eeecCCCCCCCceeEEeeecchhhhhh--eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE--EEecc-
Confidence            999999987543333222233336666  679997655 8899999999999999887 8999998866655  67776 


Q ss_pred             CCCCEEEEEccCCeEEEEe
Q 009380          516 HQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       516 ~~~~~lasgs~Dg~v~iW~  534 (536)
                       ++..|++||.|.+|+|+.
T Consensus       399 -~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  399 -EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             -CCceEEeccCcceEEEec
Confidence             567999999999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-32  Score=232.72  Aligned_cols=248  Identities=19%  Similarity=0.298  Sum_probs=216.7

Q ss_pred             CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380          272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLN  350 (536)
Q Consensus       272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~  350 (536)
                      .+....+..|.++|..+.|+-+| ++.++|+.|.+|++|+...+.++..+ +|...|..++.+.++ ..|++|+.|..+.
T Consensus         7 tkr~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~   84 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQ   84 (307)
T ss_pred             chhceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEE
Confidence            34667788999999999999999 99999999999999999998877666 688899999999988 7899999999999


Q ss_pred             EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeE
Q 009380          351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l  429 (536)
                      +||+.+|+.++.|.+|...|+.|.|+.+. .++++|+.|.++++||.|+..   ..++++. .....|.++..+  +..|
T Consensus        85 vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s---~ePiQildea~D~V~Si~v~--~heI  158 (307)
T KOG0316|consen   85 VWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRS---FEPIQILDEAKDGVSSIDVA--EHEI  158 (307)
T ss_pred             EEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCC---CCccchhhhhcCceeEEEec--ccEE
Confidence            99999999999999999999999999866 799999999999999999864   2344444 677899999885  6789


Q ss_pred             EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeee
Q 009380          430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPC  509 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~  509 (536)
                      ++|+.||+++.||++.+....-     ..+.++++  +.|+++++++++++.|+++++.|-.+|++++.+.+|.......
T Consensus       159 vaGS~DGtvRtydiR~G~l~sD-----y~g~pit~--vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykl  231 (307)
T KOG0316|consen  159 VAGSVDGTVRTYDIRKGTLSSD-----YFGHPITS--VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKL  231 (307)
T ss_pred             EeeccCCcEEEEEeecceeehh-----hcCCccee--EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeee
Confidence            9999999999999998765433     23444555  6799999999999999999999999999999999988777766


Q ss_pred             eEeecCCCCCEEEEEccCCeEEEEec
Q 009380          510 RFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       510 ~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ..++...+ ..+++|++||.|++||+
T Consensus       232 dc~l~qsd-thV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  232 DCCLNQSD-THVFSGSEDGKVYFWDL  256 (307)
T ss_pred             eeeecccc-eeEEeccCCceEEEEEe
Confidence            66666545 89999999999999997

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=6.6e-32  Score=247.49  Aligned_cols=287  Identities=15%  Similarity=0.233  Sum_probs=235.1

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEec-CCccEEEEEeCCCc
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPC-SDVRMVVAGSKLGN  259 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~-~~~~~l~tg~~dg~  259 (536)
                      .|.|+|.+++..  ++.+          +++.+||.+++|+...+......+|.++|.+++|.-. .....+++++.|.+
T Consensus       103 ~hdDWVSsv~~~--~~~I----------ltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqt  170 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWI----------LTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQT  170 (423)
T ss_pred             cchhhhhhhccc--CceE----------EEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCce
Confidence            467788887777  3333          3678999999999988888888999999999888752 22346999999999


Q ss_pred             EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC------------------------
Q 009380          260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE------------------------  315 (536)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~------------------------  315 (536)
                      +++|..+.+......+..-++|...|.++...+++ ..+++||.|.+|.+|+....                        
T Consensus       171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~  249 (423)
T KOG0313|consen  171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT  249 (423)
T ss_pred             EEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence            99999987654344555556999999999999999 99999999999999994221                        


Q ss_pred             --eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          316 --VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       316 --~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                        ....+.+|..+|.++.|++.  ..+++++.|.+|+.||+.++..+.++. ....++||..+|.. ++|++|+.|..|+
T Consensus       250 r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~-~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  250 RTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLS-KLLASGSSDRHIR  325 (423)
T ss_pred             cCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeee-cCcceeEeeccccc-ceeeecCCCCcee
Confidence              12445689999999999984  689999999999999999999988887 46789999999966 8999999999999


Q ss_pred             EEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcC
Q 009380          394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGW  471 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~  471 (536)
                      +||.|++.. ......+.+|.+.|.++.|+| +..+|++++.|+++++||+++.+ ++..+...     .-..+++.|. 
T Consensus       326 l~DPR~~~g-s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-----~DKvl~vdW~-  398 (423)
T KOG0313|consen  326 LWDPRTGDG-SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-----NDKVLSVDWN-  398 (423)
T ss_pred             ecCCCCCCC-ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-----CceEEEEecc-
Confidence            999999742 234456679999999999999 55678999999999999999876 77776432     2245667786 


Q ss_pred             CCCEEEEEcCCCcEEEEcCC
Q 009380          472 DDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~  491 (536)
                      ++.+|++|+.|..|+|+...
T Consensus       399 ~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CCceEEeccCcceEEEeccc
Confidence            46699999999999998643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-31  Score=259.74  Aligned_cols=283  Identities=18%  Similarity=0.246  Sum_probs=243.7

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      +..++.+|-+|.|||  ...+++++-.+|+|.||+.++    ...+..+.-..-+|.+..|-+.. +++++|+.|..|+|
T Consensus         9 ~~~rSdRVKsVd~HP--tePw~la~LynG~V~IWnyet----qtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrV   81 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHP--TEPWILAALYNGDVQIWNYET----QTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRV   81 (794)
T ss_pred             hhccCCceeeeecCC--CCceEEEeeecCeeEEEeccc----ceeeeeeeecccchhhheeeecc-ceEEEecCCceEEE
Confidence            345889999999999  889999999999999999998    78888998889999999999987 99999999999999


Q ss_pred             EECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          310 MDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       310 wd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      |+.+++... .+..|..-|.+++.+|.. -++++++.|-+|++||.... .+.+++.+|...|.+|+|+|.+++.||+++
T Consensus        82 fnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   82 FNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             EecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence            999997655 455799999999999998 59999999999999999865 568899999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      .|++|+||.+....    ....+.+|...|+++.|-+  +..+|++|+.|.+|+|||..+..++.++..+..   .++. 
T Consensus       161 LDrTVKVWslgs~~----~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~---Nvs~-  232 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPH----PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN---NVSF-  232 (794)
T ss_pred             ccccEEEEEcCCCC----CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc---cceE-
Confidence            99999999998743    5566779999999999998  446999999999999999999999998853222   1232 


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                       +.|+|.-.++++|+.||+|+||+..+.++..++.-....+.  ++..++.+ +.++.|.+.|.|.|
T Consensus       233 -v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW--~I~~~k~~-~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  233 -VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVW--CIAAHKGD-GKIAVGFDEGSVTV  295 (794)
T ss_pred             -EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEE--EEeecCCC-CeEEEeccCCcEEE
Confidence             67899999999999999999999999887777765444443  45666644 67888888887754

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-31  Score=265.71  Aligned_cols=283  Identities=14%  Similarity=0.184  Sum_probs=232.0

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeCCCc
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSKLGN  259 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~  259 (536)
                      .....|..+.|.|.--.+..          +-.+|.|+|||...... .....|.++|..++|||  .+.++++|+.|-.
T Consensus         7 skSsRvKglsFHP~rPwILt----------slHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~--~qplFVSGGDDyk   74 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILT----------SLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP--TQPLFVSGGDDYK   74 (1202)
T ss_pred             cccccccceecCCCCCEEEE----------eecCceeeeehhhhhhHHhhhhccCCccceeeecC--CCCeEEecCCccE
Confidence            34467788899999887773          46788999999865432 33567999999999999  9999999999999


Q ss_pred             EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCC
Q 009380          260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVN  338 (536)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~  338 (536)
                      |+||+..+    ..++.++.+|-..|..+.|++.- .+|+|+|.|.+|+||+..+..++. +.+|...|.|..|+|.. .
T Consensus        75 IkVWnYk~----rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-D  148 (1202)
T KOG0292|consen   75 IKVWNYKT----RRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-D  148 (1202)
T ss_pred             EEEEeccc----ceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-c
Confidence            99999998    89999999999999999999998 999999999999999999987664 55899999999999987 7


Q ss_pred             EEEEEECCCeEEEEECCCCc---------------------------c--ceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380          339 TLYFGEGQGGLNIWDVRSRK---------------------------S--ATEWLLHEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       339 ~l~~g~~dg~i~i~d~~~~~---------------------------~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      ++++++.|-+|++||+..-+                           .  -+.+.+|...|+-++|+|.-+ ++++|+.|
T Consensus       149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DD  227 (1202)
T KOG0292|consen  149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADD  227 (1202)
T ss_pred             eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCc
Confidence            99999999999999975210                           0  134568999999999999875 99999999


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      +.|++|.+...+  .-.+-...+|.+.|.++-|+|..++|++.|.|++|+|||+...+.+.++++.+..   .++  ++-
T Consensus       228 RqVKlWrmnetK--aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendR---FW~--laa  300 (1202)
T KOG0292|consen  228 RQVKLWRMNETK--AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDR---FWI--LAA  300 (1202)
T ss_pred             ceeeEEEecccc--ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCe---EEE--EEe
Confidence            999999988643  2233345589999999999999999999999999999999999999888765432   233  334


Q ss_pred             cCCCCEEEEEcCCCcEEEEcC
Q 009380          470 GWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      +|..+++++|- |+.+.||.+
T Consensus       301 hP~lNLfAAgH-DsGm~VFkl  320 (1202)
T KOG0292|consen  301 HPELNLFAAGH-DSGMIVFKL  320 (1202)
T ss_pred             cCCcceeeeec-CCceEEEEE
Confidence            66666655553 333444444

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3.1e-32  Score=244.48  Aligned_cols=288  Identities=19%  Similarity=0.233  Sum_probs=243.4

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      ....+-|..|+|  ||.+|++|+.||-|.+|+..++...    .+..-.|.-|..+|.|+.|+.|. ..|++|+.||.|+
T Consensus       212 ~KSh~EcA~FSP--DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIK  288 (508)
T KOG0275|consen  212 QKSHVECARFSP--DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIK  288 (508)
T ss_pred             cccchhheeeCC--CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEE
Confidence            356788999999  9999999999999999999874321    12223455688999999999998 9999999999999


Q ss_pred             EEECCCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          309 LMDAEKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       309 vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      +|.+++|.+...+  .|...|+|+.|+.++ ..+++++.|.++++.-+.+|+++..+.+|...|+...|.++| +.++++
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG-~~iisa  366 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDG-HHIISA  366 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCC-CeEEEe
Confidence            9999999887666  488999999999998 788999999999999999999999999999999999999988 799999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC-CCceeee
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ-TGRWISS  464 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~  464 (536)
                      +.||+|++|+..+.++.  ......+...+|+++..-| +...+++|...++|.|.++. ++.+..+..... .+..+. 
T Consensus       367 SsDgtvkvW~~KtteC~--~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~-  442 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECL--STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFIN-  442 (508)
T ss_pred             cCCccEEEecCcchhhh--hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEE-
Confidence            99999999999986532  2223335678899999888 66789999999999999984 555666643333 333333 


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                        ++.+|.|.++++.+.|+.++.|.+.+|..-.++.-|...++  .++.||+. +.||+=+.||.+++|.
T Consensus       443 --~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvI--Gl~HHPHq-NllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  443 --AILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVI--GLTHHPHQ-NLLASYSEDGLLKLWK  507 (508)
T ss_pred             --EEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccc--ccccCccc-chhhhhcccchhhhcC
Confidence              67899999999999999999999999998888887776665  67889976 9999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5.9e-32  Score=234.67  Aligned_cols=286  Identities=17%  Similarity=0.206  Sum_probs=247.0

Q ss_pred             ccccccCCceEEEEEEec-CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          228 NIARIMPGRITQMKFLPC-SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      .+..+|..+|..++|+|. .+|-+|+++++||.-.+-+-++    +.-+-+|.+|.+.|+....+.+. ..-++++.|-+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t----gdwigtfeghkgavw~~~l~~na-~~aasaaadft   82 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT----GDWIGTFEGHKGAVWSATLNKNA-TRAASAAADFT   82 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCC----CCcEEeeeccCcceeeeecCchh-hhhhhhcccch
Confidence            446889999999999973 4788999999999988877777    78899999999999999998887 78899999999


Q ss_pred             EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      -++||.-++.....+.|..-|.+++|+.+. +.|++|+.+.-++|||++..+ +...+.+|.+.|..+.|+... +.|++
T Consensus        83 akvw~a~tgdelhsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLS  160 (334)
T KOG0278|consen   83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILS  160 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEe
Confidence            999999999988899999999999999998 899999999999999998765 467888999999999999855 78888


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      ++.|++|++||.+++.     .........+|+++.++++|.+| |....+.|.+||..+...+..+....      .+-
T Consensus       161 Sadd~tVRLWD~rTgt-----~v~sL~~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~------nV~  228 (334)
T KOG0278|consen  161 SADDKTVRLWDHRTGT-----EVQSLEFNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPC------NVE  228 (334)
T ss_pred             eccCCceEEEEeccCc-----EEEEEecCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCcc------ccc
Confidence            8999999999999974     45556678899999999999855 55667789999999988877664332      222


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEcCCccccceec-cCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL-QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l-~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .+..+|+...+++|+.|..++.||..+++.+..+ ++|+..+.  ++.|+| +|...++|+.||+|+||..
T Consensus       229 SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh--cVrFSP-dGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  229 SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH--CVRFSP-DGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             cccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE--EEEECC-CCceeeccCCCceEEEEEe
Confidence            2667899999999999999999999999998886 66666655  578888 7899999999999999975

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-31  Score=264.64  Aligned_cols=284  Identities=18%  Similarity=0.270  Sum_probs=237.4

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      +.+|-.++|||  ...+|+++-..|.|++||..-    +..+..|..|.++|..++|+|+. .+++||+.|-.|+||+..
T Consensus         9 SsRvKglsFHP--~rPwILtslHsG~IQlWDYRM----~tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    9 SSRVKGLSFHP--KRPWILTSLHSGVIQLWDYRM----GTLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             cccccceecCC--CCCEEEEeecCceeeeehhhh----hhHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEecc
Confidence            56789999999  999999999999999999997    78899999999999999999998 999999999999999999


Q ss_pred             CCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          314 KEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       314 ~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      +.++. .+.+|-..|..+.|++.- -.+++++.|-+|+||+..+++++..+.+|...|.|..|+|.. .+++++|.|.+|
T Consensus        82 ~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTV  159 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTV  159 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-ceEEEecccceE
Confidence            87765 456899999999999998 589999999999999999999999999999999999999966 699999999999


Q ss_pred             EEEeCCCCCCCCC-------------------------CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          393 CIWDLRSMATDKP-------------------------EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       393 ~iwdl~~~~~~~~-------------------------~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      +|||+.....+..                         ....+.+|...|+-++|+|.-.+|++|+.|..|++|.+...+
T Consensus       160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK  239 (1202)
T KOG0292|consen  160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK  239 (1202)
T ss_pred             EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc
Confidence            9999875432110                         011234799999999999999999999999999999986433


Q ss_pred             cc---eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380          448 NT---SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       448 ~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg  524 (536)
                      --   ....|.+    .+++  +.|+|....+++.+.|+.|+|||+...+.++++.-.+..-+  .++.||. .+++|.|
T Consensus       240 aWEvDtcrgH~n----nVss--vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW--~laahP~-lNLfAAg  310 (1202)
T KOG0292|consen  240 AWEVDTCRGHYN----NVSS--VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW--ILAAHPE-LNLFAAG  310 (1202)
T ss_pred             ceeehhhhcccC----Ccce--EEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE--EEEecCC-cceeeee
Confidence            21   1112322    2333  77999999999999999999999999999999976555444  6788994 4666665


Q ss_pred             ccCCeEEEEecC
Q 009380          525 TGGGQVYVWTSD  536 (536)
Q Consensus       525 s~Dg~v~iW~~d  536 (536)
                      - |+-+.||.++
T Consensus       311 H-DsGm~VFkle  321 (1202)
T KOG0292|consen  311 H-DSGMIVFKLE  321 (1202)
T ss_pred             c-CCceEEEEEc
Confidence            5 4556666553

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.98  E-value=3.5e-31  Score=236.50  Aligned_cols=295  Identities=18%  Similarity=0.246  Sum_probs=245.7

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC--------------CCCCCceEEeccCCCCEEEEEEecC
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ--------------QDEDNGIYLFRTHLGPISGIVTQQY  293 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~--------------~~~~~~~~~~~~h~~~V~~l~~~~~  293 (536)
                      ..+..|.+.+.+.+|+|  ||.++|+|+.|-.|+|.|++..              +.....++++-.|...|+++.|+|.
T Consensus       106 ~ylt~HK~~cR~aafs~--DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSP--DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             EEEeecccceeeeeeCC--CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            34578999999999999  9999999999999999998710              1113567889999999999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccC
Q 009380          294 CLSKIFTSCYDGLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHE  367 (536)
Q Consensus       294 ~~~~l~s~s~dg~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~  367 (536)
                      . ..|++++.|++|++||+.+...   ...+....+|.++.|+|.| .+|++|+....+++||+.+.++...-   ..|.
T Consensus       184 e-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  184 E-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             h-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            8 9999999999999999987533   2345566899999999999 89999999999999999998774332   3799


Q ss_pred             CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cc-cCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SH-KRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~-~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      +.|++|.+++.+ .+.++|+.||.|++||--++.     ++...  .| ...|.++.|..+|+||++.+.|..+++|.+.
T Consensus       262 ~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r-----Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  262 GAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR-----CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             cceeEEEecCCc-cEEEEeccCCcEEeeccccHH-----HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            999999999977 799999999999999977643     33333  34 4579999999999999999999999999999


Q ss_pred             CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      ++..+..+.....+++......+.|+....|++.-.. .+.+.-||.++...+..+...|.+.+.+ +..+|. +..+++
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~-i~HSP~-~p~FmT  413 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW-IVHSPV-EPAFMT  413 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE-EEeCCC-CCceee
Confidence            9999988876655666555556788888888776644 3779999999998888888777777644 556674 589999


Q ss_pred             EccCCeEEEEe
Q 009380          524 ATGGGQVYVWT  534 (536)
Q Consensus       524 gs~Dg~v~iW~  534 (536)
                      |+.|-.+++|-
T Consensus       414 csdD~raRFWy  424 (430)
T KOG0640|consen  414 CSDDFRARFWY  424 (430)
T ss_pred             ecccceeeeee
Confidence            99999999995

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=2.4e-29  Score=226.41  Aligned_cols=293  Identities=18%  Similarity=0.264  Sum_probs=237.2

Q ss_pred             CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-
Q 009380          225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-  303 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-  303 (536)
                      ++..+.+...+.|+++.|++  +|.+|++++.|.+++|||..+    +..+.++..+.-.|..++|.... +.++.++. 
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~----g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk   77 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLS----GKQVKTINSKKYGVDLACFTHHS-NTVIHSSTK   77 (311)
T ss_pred             ccccccccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCC----CceeeEeecccccccEEEEecCC-ceEEEccCC
Confidence            34445555778999999999  999999999999999999998    78888888888889999998776 66776666 


Q ss_pred             -CCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          304 -DGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       304 -dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                       |.+|+..++.+.+....+ +|...|.+|+.+|-+ ..+++++.|++|++||++..++...+.....+  .++|.|+| -
T Consensus        78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~G-L  153 (311)
T KOG1446|consen   78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEG-L  153 (311)
T ss_pred             CCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCC-c
Confidence             899999999998877665 789999999999998 89999999999999999988887766543333  47899988 7


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR  460 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  460 (536)
                      ++|++.....|++||+|...........+. ......+.+.|+|+|++|+.++..+.+++.|.-++.....+......+.
T Consensus       154 ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  154 IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN  233 (311)
T ss_pred             EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence            888888777999999998753222222222 3467889999999999999999999999999999988877754333222


Q ss_pred             eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                        ..+.++|+||++++++|+.||+|.+|++.++..+..+.+.+...+ ..+.|+|. ..+++++  +..+.+|-
T Consensus       234 --~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~-~~~~fnP~-~~mf~sa--~s~l~fw~  301 (311)
T KOG1446|consen  234 --LPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV-SCVRFNPR-YAMFVSA--SSNLVFWL  301 (311)
T ss_pred             --cceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc-cccccCCc-eeeeeec--CceEEEEe
Confidence              225588999999999999999999999999999999998755555 34679883 2455554  45788884

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3e-31  Score=266.82  Aligned_cols=253  Identities=16%  Similarity=0.211  Sum_probs=209.4

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC--------------------------------CCC--------
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS--------------------------------QQD--------  270 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~--------------------------------~~~--------  270 (536)
                      ..|.+.|+++.|++  ||+|||+|+.||.|+||.+..                                ...        
T Consensus       264 ~ah~gaIw~mKFS~--DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  264 NAHKGAIWAMKFSH--DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccCCcEEEEEeCC--CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            38999999999999  999999999999999998865                                000        


Q ss_pred             ----------------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          271 ----------------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       271 ----------------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                                      ...++..|.+|.+.|.+|.|+.+  ++|+++|.|.+|++|++....+..++.|..-|+|++|+|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnP  419 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNP  419 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecc
Confidence                            12344567899999999999987  699999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---  411 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---  411 (536)
                      .+.++|++|+.||.|+||++...+.+.-.. -..-|++++|.|+| +..+.|+.+|.+++|+....+......+...   
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            999999999999999999998776554444 45899999999997 7999999999999999987642111111111   


Q ss_pred             --cccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          412 --SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       412 --~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                        .|. .|+.+.|.| +...+++.+.|..|+|||.++...+..+.........   +.+.|+.||++|++++.|..|+||
T Consensus       498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ---~~Asfs~Dgk~IVs~seDs~VYiW  573 (712)
T KOG0283|consen  498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQ---ISASFSSDGKHIVSASEDSWVYIW  573 (712)
T ss_pred             cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcc---eeeeEccCCCEEEEeecCceEEEE
Confidence              133 899999998 4446888899999999999888888888644333332   347899999999999999999999


Q ss_pred             cCCcc
Q 009380          489 SPAQR  493 (536)
Q Consensus       489 d~~~~  493 (536)
                      +....
T Consensus       574 ~~~~~  578 (712)
T KOG0283|consen  574 KNDSF  578 (712)
T ss_pred             eCCCC
Confidence            97443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.98  E-value=1.2e-30  Score=247.51  Aligned_cols=297  Identities=19%  Similarity=0.245  Sum_probs=229.9

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      +..++.|...|+++++.|  .|..|++|+.|.+|++||+............+. .....|.++.|++.+ ..|++.+...
T Consensus       160 Ei~l~hgtk~Vsal~~Dp--~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~a  236 (641)
T KOG0772|consen  160 EIQLKHGTKIVSALAVDP--SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSGSA  236 (641)
T ss_pred             eEeccCCceEEEEeeecC--CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEecCc
Confidence            444677889999999999  999999999999999999986432222222222 234579999999999 8888888888


Q ss_pred             eEEEEECCCCeEE-------------EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEe-----cc
Q 009380          306 LIRLMDAEKEVFD-------------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWL-----LH  366 (536)
Q Consensus       306 ~I~vwd~~~~~~~-------------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~-----~h  366 (536)
                      ..+|+|-..-...             ...+|...++|-+|+|.....+++++.||+++|||+...+. +..+.     +.
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            9999998764332             23368889999999999989999999999999999986543 33333     23


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      .-.+++++|+|++ .+||+|+.||.|.+||.+... ..+.......|..  .|+||.||++|++|++-+.|+++++||++
T Consensus       317 Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  317 RVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             ccCceeeecCCCc-chhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            3468899999998 689999999999999986643 1222223336777  99999999999999999999999999999


Q ss_pred             CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCC
Q 009380          445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV  518 (536)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~  518 (536)
                      +.+..........+.  .....++|||+.++|++|+.      .|.+.+||..+.+.++++.-...+++  .+.|||.- 
T Consensus       395 q~kkpL~~~tgL~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv--~~~WhpkL-  469 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVV--RCLWHPKL-  469 (641)
T ss_pred             ccccchhhhcCCCcc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEE--EEeecchh-
Confidence            876543332221111  12234889999999999854      36799999999999998876544444  67999954 


Q ss_pred             CEEEEEccCCeEEEE
Q 009380          519 GTLAGATGGGQVYVW  533 (536)
Q Consensus       519 ~~lasgs~Dg~v~iW  533 (536)
                      ++|..|+.||.++||
T Consensus       470 NQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  470 NQIFAGSGDGTAHVY  484 (641)
T ss_pred             hheeeecCCCceEEE
Confidence            888888999999986

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=4.1e-30  Score=253.96  Aligned_cols=331  Identities=18%  Similarity=0.188  Sum_probs=269.0

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~t  253 (536)
                      .-.++.||...|.++.|+..|..++          +++.|+.|.+||+..+.. ..+++|.+.|+..-|..  +.++|++
T Consensus        99 ~~~tfngHK~AVt~l~fd~~G~rla----------SGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lvS  166 (888)
T KOG0306|consen   99 ILITFNGHKAAVTTLKFDKIGTRLA----------SGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLVS  166 (888)
T ss_pred             eeeeecccccceEEEEEcccCceEe----------ecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEEE
Confidence            4457889999999999999999999          569999999999855443 34689999999999998  7899999


Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC----------------CeE
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----------------EVF  317 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~----------------~~~  317 (536)
                      .++|+.|++||+.+    ..+..+...|.+.|+.+++.+   +.+++++.|+.+.+|++..                |.+
T Consensus       167 ~sKDs~iK~WdL~t----qhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~  239 (888)
T KOG0306|consen  167 VSKDSMIKFWDLET----QHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF  239 (888)
T ss_pred             eccCceEEEEeccc----ceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence            99999999999998    789999999999999999987   6899999999999999810                000


Q ss_pred             --------------------------------------------------------------------------------
Q 009380          318 --------------------------------------------------------------------------------  317 (536)
Q Consensus       318 --------------------------------------------------------------------------------  317 (536)
                                                                                                      
T Consensus       240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~  319 (888)
T KOG0306|consen  240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT  319 (888)
T ss_pred             eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence                                                                                            


Q ss_pred             -----------------------------------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380          318 -----------------------------------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLN  350 (536)
Q Consensus       318 -----------------------------------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~  350 (536)
                                                                     ....+|...|.+++++.+.  .++..+..+.|.
T Consensus       320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~--~~~~Sga~~Sik  397 (888)
T KOG0306|consen  320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS--ILLASGAGESIK  397 (888)
T ss_pred             hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc--eeeeecCCCcEE
Confidence                                                           0011355567888888775  455555567999


Q ss_pred             EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE
Q 009380          351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~  430 (536)
                      +|+..+.++++++..  +.+.+.+|.| |..++++|...|.+.+||+.+..    .+-.+..|.+.|++++.+||+..++
T Consensus       398 iWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~----l~Eti~AHdgaIWsi~~~pD~~g~v  470 (888)
T KOG0306|consen  398 IWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASAS----LVETIRAHDGAIWSISLSPDNKGFV  470 (888)
T ss_pred             EEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhh----hhhhhhccccceeeeeecCCCCceE
Confidence            999999999999874  3889999999 44899999999999999999853    4445558999999999999999999


Q ss_pred             EEeCCCcEEEEeCCC-----CC--cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380          431 TTSFDDTIGIWSGVN-----FE--NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY  503 (536)
Q Consensus       431 t~s~dg~I~iwd~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~  503 (536)
                      |+|.|.+|++||..-     +.  ....+.|.....-.-.++++.+||||++|+++--|++|+||-+++.+..-.+.+|.
T Consensus       471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk  550 (888)
T KOG0306|consen  471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK  550 (888)
T ss_pred             EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc
Confidence            999999999999641     11  11222222211112234668899999999999999999999999999888999988


Q ss_pred             eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          504 ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       504 ~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      -.+.+.  ..+| |+.+++|||.|..|+||-+|
T Consensus       551 LPV~sm--DIS~-DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  551 LPVLSM--DISP-DSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             cceeEE--eccC-CcCeEEeccCCCceEEeccc
Confidence            887754  4455 67999999999999999775

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-30  Score=226.12  Aligned_cols=266  Identities=23%  Similarity=0.338  Sum_probs=216.1

Q ss_pred             cccceEEecccccCccccc----cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          212 EVGSCVDIGSLTLKPENIA----RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~~~~~----~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      ...|.+.|-++. ++..+.    ....+.++.|+|+++ ..+.+++++.||.++|||+...   ..++..++.|...|.+
T Consensus        35 ~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~-~e~~~~~a~GDGSLrl~d~~~~---s~Pi~~~kEH~~EV~S  109 (311)
T KOG0277|consen   35 AGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSEN-HENQVIAASGDGSLRLFDLTMP---SKPIHKFKEHKREVYS  109 (311)
T ss_pred             ccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCC-CcceEEEEecCceEEEeccCCC---CcchhHHHhhhhheEE
Confidence            344678877764 222221    123789999999996 4578888899999999997653   5789999999999999


Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH  366 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h  366 (536)
                      +.|++.....++++|.|++|++|+...+.. ....+|...|....|+|..++++++++.||++++||++.......+..|
T Consensus       110 vdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah  189 (311)
T KOG0277|consen  110 VDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH  189 (311)
T ss_pred             eccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec
Confidence            999998768899999999999999887654 4455789999999999999999999999999999999976555558899


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      ...|.|+.|+.-+.++++||+.|+.|++||+|+.+   ..+..+.+|...|..+.||| ....|+++++|-+++|||...
T Consensus       190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER  266 (311)
T ss_pred             cceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence            99999999999888999999999999999999975   34566679999999999999 457899999999999999874


Q ss_pred             CC-cceEEeccCCCCceeeeeEEEEcC-CCCEEEEEcCCCcEEEEcC
Q 009380          446 FE-NTSMIHHNNQTGRWISSFRAIWGW-DDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       446 ~~-~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~gs~dg~I~v~d~  490 (536)
                      .. .+.+..++..   .+.  .+.|++ ++.++++.+.|..++||+.
T Consensus       267 ~ds~~e~~~~HtE---Fv~--g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  267 QDSAIETVDHHTE---FVC--GLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             chhhhhhhhccce---EEe--ccccccccCceeeecccccceeeecc
Confidence            43 3333333221   222  244655 5678999999999999984

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=2e-31  Score=241.40  Aligned_cols=275  Identities=14%  Similarity=0.207  Sum_probs=222.8

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      ..++|.|+++.. +           ++.++..|++|.+||... ....++.+|.+.|.|+.|    +.+.|++|+.|.+|
T Consensus       196 ~skgVYClQYDD-~-----------kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy----d~rviisGSSDsTv  259 (499)
T KOG0281|consen  196 NSKGVYCLQYDD-E-----------KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY----DERVIVSGSSDSTV  259 (499)
T ss_pred             cCCceEEEEecc-h-----------hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec----cceEEEecCCCceE
Confidence            446666666542 2           234567889999999743 344567899999999999    45799999999999


Q ss_pred             EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecCCC
Q 009380          261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQPNN  336 (536)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~  336 (536)
                      +|||+++    +.++.++.+|...|..+.|+.   .+++++|.|.+|.+||+....-    ..+.+|...|..+.|+.  
T Consensus       260 rvWDv~t----ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--  330 (499)
T KOG0281|consen  260 RVWDVNT----GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--  330 (499)
T ss_pred             EEEeccC----CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--
Confidence            9999999    889999999999999999985   6999999999999999987542    23457889999999974  


Q ss_pred             CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc
Q 009380          337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA  416 (536)
Q Consensus       337 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~  416 (536)
                       .++++++.|.+|++|++.+++.++++.+|...|-|+.+.  + .++++|+.|.+|++||+..+.    ....+.+|..-
T Consensus       331 -kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~----cLRvLeGHEeL  402 (499)
T KOG0281|consen  331 -KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEEL  402 (499)
T ss_pred             -ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH----HHHHHhchHHh
Confidence             599999999999999999999999999999999999886  3 799999999999999999874    44455699999


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE------eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI------HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      |.++.|+  .+.|++|++||+|+|||+.........      .+.....  -..|++.|  |...+++++.|.+|.|||.
T Consensus       403 vRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs--gRVFrLQF--D~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS--GRVFRLQF--DEFQIISSSHDDTILIWDF  476 (499)
T ss_pred             hhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc--ceeEEEee--cceEEEeccCCCeEEEEEc
Confidence            9999995  677999999999999999765433211      1111111  13445556  4457999999999999999


Q ss_pred             Ccccc
Q 009380          491 AQRRS  495 (536)
Q Consensus       491 ~~~~~  495 (536)
                      ..+-.
T Consensus       477 l~~~~  481 (499)
T KOG0281|consen  477 LNGPP  481 (499)
T ss_pred             CCCCc
Confidence            87643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=1e-29  Score=232.15  Aligned_cols=289  Identities=12%  Similarity=0.107  Sum_probs=237.7

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ...+..|.+.|++++.+|  +.++++||+.|..-.||++.+    +.....+.+|...|+++.|+.++ .+|+||+.+|.
T Consensus        57 ~~tF~~H~~svFavsl~P--~~~l~aTGGgDD~AflW~~~~----ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~  129 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHP--NNNLVATGGGDDLAFLWDIST----GEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGK  129 (399)
T ss_pred             eeehhhcCCceEEEEeCC--CCceEEecCCCceEEEEEccC----CcceeEecCCCCceEEEEEccCc-eEEEecCCCcc
Confidence            344688999999999999  899999999999999999998    67888999999999999999999 99999999999


Q ss_pred             EEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          307 IRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       307 I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      |+||...++.....+ ..-..|.-+.|+|.+ .+|++|+.||.|.+|.+.++...+.+.+|..++++=.|.|+| ..+++
T Consensus       130 v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG-Kr~~t  207 (399)
T KOG0296|consen  130 VLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG-KRILT  207 (399)
T ss_pred             EEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC-ceEEE
Confidence            999999988665444 356788999999987 899999999999999999988888999999999999999998 68999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC--------
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN--------  456 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~--------  456 (536)
                      +..||+|++|++.++.    ....+. .......++.++..+..++.|+.++.+++-+..+++.+.......        
T Consensus       208 gy~dgti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e  283 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQE  283 (399)
T ss_pred             EecCceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccch
Confidence            9999999999999974    333332 234567888999999999999999999998877776554442100        


Q ss_pred             CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .....+.  .+.|+..-.+.|+|+.||+|.|||....+....+. |...+  +.+.|.+ . .+|++++.+|.|++||.
T Consensus       284 ~~~esve--~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V--~~l~w~~-t-~~l~t~c~~g~v~~wDa  355 (399)
T KOG0296|consen  284 ELDESVE--SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGV--TKLKWLN-T-DYLLTACANGKVRQWDA  355 (399)
T ss_pred             hhhhhhh--hcccccccchhhcccccceEEEEecccchhheecc-CCCce--EEEEEcC-c-chheeeccCceEEeeec
Confidence            0001111  13456666789999999999999999886665554 33333  4678876 3 79999999999999995

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=6.3e-31  Score=239.61  Aligned_cols=282  Identities=15%  Similarity=0.279  Sum_probs=233.0

Q ss_pred             ccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          230 ARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      +.+|.+.|.|++=+|  .. ..+++|+.||.|+|||+..    ..+..++..|.+.|..|++..   ..+++++.|.+|+
T Consensus        62 L~gHrdGV~~lakhp--~~ls~~aSGs~DG~VkiWnlsq----R~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHP--NKLSTVASGSCDGEVKIWNLSQ----RECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVK  132 (433)
T ss_pred             ccccccccchhhcCc--chhhhhhccccCceEEEEehhh----hhhhheeecccCceeeEEecc---cceEEecCCccee
Confidence            478999999999999  54 7899999999999999997    788999999999999999987   5699999999999


Q ss_pred             EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      .|.++.. ....+..+..+..|..+..+ +.+++++.  .|.|||.....++..+.--.+.|.++.|+|-...+|++|+.
T Consensus       133 ~wk~~~~-p~~tilg~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s  208 (433)
T KOG0268|consen  133 QWKIDGP-PLHTILGKSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS  208 (433)
T ss_pred             eeeccCC-cceeeecccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence            9998874 55555667778888887766 67888776  59999999889999998778899999999988889999999


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      |+.|.+||+|...     ++........-+.|+|+|.+-.|++++.|..++.||++..+.......    ++.-..+.+.
T Consensus       209 DrsIvLyD~R~~~-----Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~----dhvsAV~dVd  279 (433)
T KOG0268|consen  209 DRSIVLYDLRQAS-----PLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK----DHVSAVMDVD  279 (433)
T ss_pred             CCceEEEecccCC-----ccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhc----ccceeEEEec
Confidence            9999999999964     333333455668899999888899999999999999987765443321    1122456688


Q ss_pred             EcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          469 WGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      |||.|+-|++||.|.+|+||....+..-..+....+..+ .++.|+- |..++++||+|+.|++|..
T Consensus       280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V-~~Vk~S~-Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV-FCVKYSM-DSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             cCCCcchhccccccceEEEeecCCCcchhhhhHhhhhee-eEEEEec-cccEEEecCCCcceeeeec
Confidence            999999999999999999999988765544444344444 4566765 6699999999999999974

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=7.3e-31  Score=239.21  Aligned_cols=288  Identities=16%  Similarity=0.200  Sum_probs=233.6

Q ss_pred             ecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      |.||.++|.|+.=.|..-..+         ++++.||.|+|||+.... ...++.|.+.|..+++..    ..+++++.|
T Consensus        62 L~gHrdGV~~lakhp~~ls~~---------aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdD  128 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTV---------ASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDD  128 (433)
T ss_pred             ccccccccchhhcCcchhhhh---------hccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCC
Confidence            689999999999888773322         368999999999996543 445788999999999975    678899999


Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNN  336 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~  336 (536)
                      .+|+.|.++     +..+.++.+. ..+..|.-+..+ +.++||+.+  |.|||.+...+...+. ....|.++.|+|..
T Consensus       129 KtvK~wk~~-----~~p~~tilg~-s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvE  199 (433)
T KOG0268|consen  129 KTVKQWKID-----GPPLHTILGK-SVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVE  199 (433)
T ss_pred             cceeeeecc-----CCcceeeecc-cccccccccccc-ccccccCce--eeecccccCCccceeecCCCceeEEecCCCc
Confidence            999999998     4566666553 456777777666 889999755  8899998776655554 34679999999998


Q ss_pred             CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc
Q 009380          337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA  416 (536)
Q Consensus       337 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~  416 (536)
                      ..+|++++.|+.|.+||++++.++..+. ..-.-+.|+|+| ....|++|++|..++.||+|...   ..+....+|...
T Consensus       200 TsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvsA  274 (433)
T KOG0268|consen  200 TSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVSA  274 (433)
T ss_pred             chheeeeccCCceEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhc---ccchhhccccee
Confidence            8899999999999999999999988776 355668899999 55789999999999999999975   234444589999


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV  496 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~  496 (536)
                      |.++.|||.|+-|++||.|.+|+||..+.+.....+ |   +.+-..++++.||.|.+|+++||.|+.|++|.....+.+
T Consensus       275 V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY-h---tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  275 VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY-H---TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             EEEeccCCCcchhccccccceEEEeecCCCcchhhh-h---HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence            999999999999999999999999999876554443 2   222335667899999999999999999999987655443


Q ss_pred             e
Q 009380          497 A  497 (536)
Q Consensus       497 ~  497 (536)
                      .
T Consensus       351 g  351 (433)
T KOG0268|consen  351 G  351 (433)
T ss_pred             C
Confidence            3

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.2e-30  Score=241.49  Aligned_cols=284  Identities=18%  Similarity=0.188  Sum_probs=239.0

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      .+.+.-|..+|+.+.|-++...++          ++++|..|.+|+......   ..+.+..+.|+++.|.+  ++..++
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtla----------tgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~--~~~~~i  235 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLA----------TGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS--DNKHVI  235 (459)
T ss_pred             hhhhhccccccceeEEccCcchhh----------hcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC--CCceEE
Confidence            456778999999999999988888          668999999999755442   23344567799999999  999999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEe
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQ  332 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~  332 (536)
                      +++.|+.+++|+++.    .....++.+|++.|+++.|.... ..+++|+.|.+|++||+.+..+....-....+..|+.
T Consensus       236 Aas~d~~~r~Wnvd~----~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~  310 (459)
T KOG0288|consen  236 AASNDKNLRLWNVDS----LRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC  310 (459)
T ss_pred             eecCCCceeeeeccc----hhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence            999999999999998    78889999999999999999886 5699999999999999999888777666677888887


Q ss_pred             cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-
Q 009380          333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-  411 (536)
Q Consensus       333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-  411 (536)
                      .+   ..+++|..|+.|++||+++..+......+. .|+++..++++ ..+++++.|.++.+.|+++..    ....+. 
T Consensus       311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e----I~~~~sA  381 (459)
T KOG0288|consen  311 SI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE----IRQTFSA  381 (459)
T ss_pred             cc---eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc----EEEEeec
Confidence            73   579999999999999999999998888665 99999999977 677778999999999999853    222221 


Q ss_pred             ---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          412 ---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       412 ---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                         ......+.+.|||++.|+++||.||.|+||++.+++....+.......   .++.+.|+|.|.++++++.++.+.+|
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~---aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA---AITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc---ceEEEEEcCCCchhhcccCCcceEec
Confidence               123458899999999999999999999999999998887775433221   34558899999999999999999998

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=241.18  Aligned_cols=290  Identities=18%  Similarity=0.210  Sum_probs=244.1

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..++..|.+.+..+.|-+  +...|++|+.|..|++|++....  ...+.++.+..++|+.+.|.+++ .++++++.|+.
T Consensus       168 ~~~ld~h~gev~~v~~l~--~sdtlatgg~Dr~Ik~W~v~~~k--~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~  242 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLR--NSDTLATGGSDRIIKLWNVLGEK--SELISTLAGSLGNITSIDFDSDN-KHVIAASNDKN  242 (459)
T ss_pred             hhhhhccccccceeEEcc--Ccchhhhcchhhhhhhhhcccch--hhhhhhhhccCCCcceeeecCCC-ceEEeecCCCc
Confidence            456688999999999999  87899999999999999998632  34677888888999999999999 99999999999


Q ss_pred             EEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          307 IRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       307 I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      +++|++...... .+.+|...|+++.|.... ..+++|+.|.+|++||+....+..++. ....++.|+..+   ..+++
T Consensus       243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~---~~~~S  317 (459)
T KOG0288|consen  243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI---SDVIS  317 (459)
T ss_pred             eeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheecccc-ccccccceEecc---eeeee
Confidence            999999987554 455799999999998876 459999999999999999988877765 456777888763   67999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC-CCCceeee
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-QTGRWISS  464 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~  464 (536)
                      |..|+.|++||.+...     +.....-.+.|+++..+++|..|++++.|+++.++|+++.+....+.... ..+..  .
T Consensus       318 gH~DkkvRfwD~Rs~~-----~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--w  390 (459)
T KOG0288|consen  318 GHFDKKVRFWDIRSAD-----KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--W  390 (459)
T ss_pred             cccccceEEEeccCCc-----eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--c
Confidence            9999999999999853     33334445599999999999999999999999999999988877775332 22222  2


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .+++|||++.|+++|++||.|+||++.++++...+...+...-..+++|+|. |..|++++.++.+.+|.
T Consensus       391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s-G~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPS-GSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCC-CchhhcccCCcceEecC
Confidence            3488999999999999999999999999999888887666633367899994 69999999999999994

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=1.9e-30  Score=244.90  Aligned_cols=253  Identities=16%  Similarity=0.187  Sum_probs=215.6

Q ss_pred             CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380          272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGL  349 (536)
Q Consensus       272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i  349 (536)
                      ...++++.+|+..|+++.|.|....+|++++.|+.|+||++.. +.+ ....+|..+|.+++|+.++ ..+++++.|+.|
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~l  282 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFL  282 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-Ceeeeeecceee
Confidence            4577899999999999999994449999999999999999876 444 4556899999999999998 899999999999


Q ss_pred             EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380          350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l  429 (536)
                      ++||+++|+++..+. ....++|+.|+|+++++|++|+.|+.|+.||+|+++    .+.....|-+.|..+.|-++|.++
T Consensus       283 KlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----vvqeYd~hLg~i~~i~F~~~g~rF  357 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----VVQEYDRHLGAILDITFVDEGRRF  357 (503)
T ss_pred             eeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----HHHHHHhhhhheeeeEEccCCceE
Confidence            999999999998887 567789999999999999999999999999999974    444455789999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc---cceeccCCceee
Q 009380          430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR---SVATLQSPYISA  506 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~---~~~~l~~~~~~~  506 (536)
                      ++++.|++++||+.+..-++..+......    +.-++..+|++.++++-++|+.|.+|.+...-   .-..+.+|....
T Consensus       358 issSDdks~riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG  433 (503)
T KOG0282|consen  358 ISSSDDKSVRIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG  433 (503)
T ss_pred             eeeccCccEEEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence            99999999999999887666655322221    22235568999999999999999999875432   335677887778


Q ss_pred             eeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          507 IPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ..+.+.|+| ||.+|++|+.||.+.+||-
T Consensus       434 ys~~v~fSp-DG~~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  434 YSCQVDFSP-DGRTLCSGDSDGKVNFWDW  461 (503)
T ss_pred             ceeeEEEcC-CCCeEEeecCCccEEEeec
Confidence            888999999 7899999999999999985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.5e-29  Score=247.39  Aligned_cols=287  Identities=18%  Similarity=0.232  Sum_probs=245.3

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK  256 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~  256 (536)
                      ..+-||...|..+.++.+...+++.           ..+.+.+|+.+.. ..+.....+-+.+..|.|  .+.++++|.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sg-----------a~~SikiWn~~t~-kciRTi~~~y~l~~~Fvp--gd~~Iv~G~k  432 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASG-----------AGESIKIWNRDTL-KCIRTITCGYILASKFVP--GDRYIVLGTK  432 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeec-----------CCCcEEEEEccCc-ceeEEeccccEEEEEecC--CCceEEEecc
Confidence            3467899999999999999988854           3457888986532 333455567899999999  8999999999


Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-----C---eE-----EEeecC
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-----E---VF-----DLVYSS  323 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-----~---~~-----~~~~~~  323 (536)
                      .|.+.+||+..    ...+.+.+.|.+.|+.++.+|++ ..+++||.|.+|++||..-     +   +.     ......
T Consensus       433 ~Gel~vfdlaS----~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel  507 (888)
T KOG0306|consen  433 NGELQVFDLAS----ASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL  507 (888)
T ss_pred             CCceEEEEeeh----hhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec
Confidence            99999999998    67778888999999999999999 9999999999999999742     1   11     123345


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD  403 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~  403 (536)
                      ...|.|+.++|++ .+|+++-.|.+|++|-+.+.+..-.+.+|.-+|.||..+||+ .+++|||.|.+|+||-+.-|.  
T Consensus       508 ~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS-klivTgSADKnVKiWGLdFGD--  583 (888)
T KOG0306|consen  508 EDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGD--  583 (888)
T ss_pred             cccEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCc-CeEEeccCCCceEEeccccch--
Confidence            6889999999999 899999999999999999999888889999999999999987 799999999999999998875  


Q ss_pred             CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          404 KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       404 ~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                        .-..+++|...|+++.|.|....+.+++.|+.|+-||-..++.+..+..+..     -+.+.+.+|+|.++++++.|.
T Consensus       584 --CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~-----ev~cLav~~~G~~vvs~shD~  656 (888)
T KOG0306|consen  584 --CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS-----EVWCLAVSPNGSFVVSSSHDK  656 (888)
T ss_pred             --hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchh-----eeeeeEEcCCCCeEEeccCCc
Confidence              3345679999999999999999999999999999999999888888753322     233356789999999999999


Q ss_pred             cEEEEcCCcc
Q 009380          484 TVEVISPAQR  493 (536)
Q Consensus       484 ~I~v~d~~~~  493 (536)
                      +|++|.....
T Consensus       657 sIRlwE~tde  666 (888)
T KOG0306|consen  657 SIRLWERTDE  666 (888)
T ss_pred             eeEeeeccCc
Confidence            9999987653

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=254.61  Aligned_cols=248  Identities=15%  Similarity=0.264  Sum_probs=207.8

Q ss_pred             Eec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC--------------------------------Ce-------
Q 009380          277 LFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK--------------------------------EV-------  316 (536)
Q Consensus       277 ~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~--------------------------------~~-------  316 (536)
                      .+. .|.+.|+++.|++|| .|||+|+.|+.|+||.+..                                ..       
T Consensus       261 e~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~  339 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS  339 (712)
T ss_pred             ccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence            344 899999999999999 9999999999999998754                                00       


Q ss_pred             ----------------------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEE
Q 009380          317 ----------------------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTID  374 (536)
Q Consensus       317 ----------------------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~  374 (536)
                                            +..+.+|.+.|.+|.|+.+  ++|++++.|.+|++|++....++..|. |.+.|+||+
T Consensus       340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa  416 (712)
T KOG0283|consen  340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA  416 (712)
T ss_pred             ccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence                                  0112368889999999987  499999999999999999999999997 999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380          375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~  454 (536)
                      |+|-+.++|++|+.||.|+||++...     .+........-|++++|.|+|++.++|+.+|.+++|+....+.......
T Consensus       417 FnPvDDryFiSGSLD~KvRiWsI~d~-----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  417 FNPVDDRYFISGSLDGKVRLWSISDK-----KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             ecccCCCcEeecccccceEEeecCcC-----eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            99988899999999999999999873     4555666779999999999999999999999999999987766554431


Q ss_pred             c-----CCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380          455 N-----NQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG  528 (536)
Q Consensus       455 ~-----~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg  528 (536)
                      .     +..+..|+.+.  |.|. ...|++.+.|..|+|||.....++..|++.+...-....+|.. ||.+|+++++|.
T Consensus       492 ~~~~~Kk~~~~rITG~Q--~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs  568 (712)
T KOG0283|consen  492 RLHNKKKKQGKRITGLQ--FFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDS  568 (712)
T ss_pred             eeccCccccCceeeeeE--ecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCc
Confidence            1     22233566644  4443 2357888889999999999999999999887776667788888 889999999999


Q ss_pred             eEEEEecC
Q 009380          529 QVYVWTSD  536 (536)
Q Consensus       529 ~v~iW~~d  536 (536)
                      .|+||+.+
T Consensus       569 ~VYiW~~~  576 (712)
T KOG0283|consen  569 WVYIWKND  576 (712)
T ss_pred             eEEEEeCC
Confidence            99999964

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.4e-28  Score=247.81  Aligned_cols=229  Identities=18%  Similarity=0.221  Sum_probs=179.8

Q ss_pred             EEeccCCCCEEEEEEec-CCCCEEEEEECCCeEEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380          276 YLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ  346 (536)
Q Consensus       276 ~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d  346 (536)
                      ..+.+|.+.|.+++|+| ++ ++|++|+.|++|++||+.++.        ...+.+|...|.+++|+|++.++|++|+.|
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            35789999999999999 55 899999999999999997642        334567899999999999876899999999


Q ss_pred             CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc-eeEEEEccC
Q 009380          347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA-VHSAYFSPS  425 (536)
Q Consensus       347 g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~-v~~l~~sp~  425 (536)
                      +.|++||+++++.+..+..|...|.+++|+|++ .+|++++.|+.|+|||+++++    .......|... +..+.|.++
T Consensus       148 gtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             CEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCC
Confidence            999999999999888999999999999999987 799999999999999999864    34455567654 457889998


Q ss_pred             CCeEEEEe----CCCcEEEEeCCCCCcceEE-eccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceec
Q 009380          426 GSSLATTS----FDDTIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       426 g~~l~t~s----~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l  499 (536)
                      +..|++++    .|+.|++||+++....... ......    ..+.+.|++++.+|++|+ .|+.|++||+.+++.+..+
T Consensus       223 ~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~----~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        223 KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS----ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC----ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            88787765    4789999999876543322 221111    122366899999998887 5999999999998876655


Q ss_pred             cCCceeeeeeeEeecC
Q 009380          500 QSPYISAIPCRFHAHP  515 (536)
Q Consensus       500 ~~~~~~~~~~~~~~~p  515 (536)
                      ...+.... ..+++.|
T Consensus       299 ~~~s~~~~-~g~~~~p  313 (493)
T PTZ00421        299 SYSSVEPH-KGLCMMP  313 (493)
T ss_pred             eccCCCCC-cceEecc
Confidence            43322222 2455555

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.7e-29  Score=235.40  Aligned_cols=283  Identities=15%  Similarity=0.204  Sum_probs=231.5

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      ..+.|.++.|+|..-.-...        +++  -.+.||+..... ...+.-+...|+++.|-.  ||.+||+|+..|.|
T Consensus        25 e~~~vssl~fsp~~P~d~aV--------t~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~--DG~LlaaGD~sG~V   92 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAV--------TSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS--DGRLLAAGDESGHV   92 (487)
T ss_pred             ccCcceeEecCCCCCCceEE--------ecc--cEEEEEecchhhhhhhHHhhccceeEEEeec--CCeEEEccCCcCcE
Confidence            34788999999955433322        112  267888864332 222344688999999999  99999999999999


Q ss_pred             EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCE
Q 009380          261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNT  339 (536)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~  339 (536)
                      +|||..+    ...+..+.+|+.+|..+.|+|.+...|++|+.|+.+++||+.+.... .+.+|...|.|.+|+|..+++
T Consensus        93 ~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hi  168 (487)
T KOG0310|consen   93 KVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHI  168 (487)
T ss_pred             EEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeE
Confidence            9999665    56788899999999999999998788999999999999999988654 566899999999999998889


Q ss_pred             EEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee
Q 009380          340 LYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH  418 (536)
Q Consensus       340 l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~  418 (536)
                      +++|+.||.|++||+++. ..+.++. |..+|..|.+.|.| .++++++. ..|+|||+-++.   ..+.....|...|+
T Consensus       169 vvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~---qll~~~~~H~KtVT  242 (487)
T KOG0310|consen  169 VVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSG-SLIASAGG-NSVKVWDLTTGG---QLLTSMFNHNKTVT  242 (487)
T ss_pred             EEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCc---eehhhhhcccceEE
Confidence            999999999999999987 5566665 99999999999976 68888874 579999999764   23444445999999


Q ss_pred             EEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       419 ~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      |+.+..++..|++++.|+.+++||+.+.+.+..+....+      ++.+..+|+++.+++|-.||.+.+-....
T Consensus       243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~p------vLsiavs~dd~t~viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGP------VLSIAVSPDDQTVVIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEEeecCCceEeecccccceEEEEccceEEEEeeecccc------eeeEEecCCCceEEEecccceeeeehhhc
Confidence            999999999999999999999999988888777755442      34477899999999999999887775433

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=3.1e-29  Score=238.01  Aligned_cols=294  Identities=17%  Similarity=0.195  Sum_probs=228.4

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc------ccccccCCceEEEEEEecCC
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------NIARIMPGRITQMKFLPCSD  247 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------~~~~~~~~~I~~v~~~p~~~  247 (536)
                      +....+++|...|.++.+.|.|-.++          +++.|..|++||+..-..      .+.-.-...|.++.|++  .
T Consensus       158 shEi~l~hgtk~Vsal~~Dp~GaR~~----------sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~--T  225 (641)
T KOG0772|consen  158 SHEIQLKHGTKIVSALAVDPSGARFV----------SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV--T  225 (641)
T ss_pred             cceEeccCCceEEEEeeecCCCceee----------eccccceEEEEecccccccchhhhccCcccccccceeeecC--C
Confidence            34456788889999999999998888          568999999999742111      11122256899999999  7


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCC--------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-E
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQD--------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-D  318 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~--------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~  318 (536)
                      |..|++.+..-+.+|+|-+....        --.-+...++|...++|.+|+|.....|+||++||++++||++..+. .
T Consensus       226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~  305 (641)
T KOG0772|consen  226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL  305 (641)
T ss_pred             CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe
Confidence            88888888788999999774211        00122345789999999999999889999999999999999986432 2


Q ss_pred             Eee------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--c-eeEeccCC--CeEEEEEecCCCCEEEEEe
Q 009380          319 LVY------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--A-TEWLLHEA--RINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       319 ~~~------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~-~~~~~h~~--~i~~i~~~p~~~~~l~s~s  387 (536)
                      .++      +..-++++++|++++ .+|++|+.||.|.+|+.+....  . ..-..|..  .|+||.|+++| ++|++-+
T Consensus       306 qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg  383 (641)
T KOG0772|consen  306 QVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRG  383 (641)
T ss_pred             eEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhcc
Confidence            222      223578999999999 7899999999999999865432  2 22347877  89999999988 7999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCCeEEEEeC------CCcEEEEeCCCCCcceEEeccCCC
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLATTSF------DDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t~s~------dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      .|+++++||++..+    .++...   ....+-+.++|||+.++|+||+.      .|++.+||..+...+..+...   
T Consensus       384 ~D~tLKvWDLrq~k----kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---  456 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFK----KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---  456 (641)
T ss_pred             CCCceeeeeccccc----cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---
Confidence            99999999999865    232222   34556788999999999999863      567999999998888887554   


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                        ..++.++.|+|.-+.|++|+.||.++||--
T Consensus       457 --~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  457 --TASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             --CceEEEEeecchhhheeeecCCCceEEEEC
Confidence              235666899999889999999999998744

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=7.1e-28  Score=245.48  Aligned_cols=265  Identities=17%  Similarity=0.154  Sum_probs=195.0

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccC----ccccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK----PENIARIMPGRITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~----~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      +...|.....++++..++......+.+.-...+|...++.-...    ....+.+|.+.|++++|+|. ++.+|++|+.|
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D   97 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED   97 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence            34555566666675444433223322211112233334332111    11245789999999999995 56799999999


Q ss_pred             CcEEEEECCCCCC---CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEec
Q 009380          258 GNITFWNLDSQQD---EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQ  333 (536)
Q Consensus       258 g~v~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~  333 (536)
                      |+|+|||+.....   ....+..+.+|...|.+++|+|++.++|++++.|++|++||++++.....+ .|...|.+++|+
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~s  177 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWN  177 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEE
Confidence            9999999976321   124567889999999999999986579999999999999999988765444 588899999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEEEE---eCCCcEEEEeCCCCCCCCCCcce
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMATS---STDGTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~s~---s~dg~i~iwdl~~~~~~~~~~~~  409 (536)
                      |++ .+|++++.||.|++||+++++.+..+.+|.+. +..+.|.+++..++.+|   +.|+.|++||+++..    .+..
T Consensus       178 pdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~----~p~~  252 (493)
T PTZ00421        178 LDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA----SPYS  252 (493)
T ss_pred             CCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC----Ccee
Confidence            998 89999999999999999999998888888765 45678888774444443   247999999999754    2333


Q ss_pred             ee--cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEE
Q 009380          410 VL--SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       410 ~~--~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~  452 (536)
                      ..  .+...+....|++++++|++++ .|+.|++||+.+++.....
T Consensus       253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        253 TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            22  3345566778999999999888 5999999999988765554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.8e-29  Score=230.75  Aligned_cols=290  Identities=13%  Similarity=0.132  Sum_probs=231.2

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCcc
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDVR  249 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~~  249 (536)
                      +...++..|.++|+.++||++|++||+.          +.|.+.-+|.+..+.    ...+.+|..+|.-+.|+|  |.+
T Consensus       215 qt~qil~~htdEVWfl~FS~nGkyLAsa----------SkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP--Ddr  282 (519)
T KOG0293|consen  215 QTWQILQDHTDEVWFLQFSHNGKYLASA----------SKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP--DDR  282 (519)
T ss_pred             hhhhhHhhCCCcEEEEEEcCCCeeEeec----------cCCceEEEEEEecCcceeeeeeeecccCceEEEEECC--CCC
Confidence            4456789999999999999999999954          566677778764332    344567899999999999  999


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCce
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYAV  327 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~i  327 (536)
                      +|++++.+..+.+||+.+    +...+.+. +|...+.+++|.||+ ..+++|+.|++|..||++........+. ...|
T Consensus       283 yLlaCg~~e~~~lwDv~t----gd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v  357 (519)
T KOG0293|consen  283 YLLACGFDEVLSLWDVDT----GDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKV  357 (519)
T ss_pred             eEEecCchHheeeccCCc----chhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhccccccccee
Confidence            999999999999999998    44444443 356889999999999 9999999999999999987654433332 3579


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      .+++..++| ..+++.+.|..|++|+..+......+. ...+|++++.+.++ +++++.-.+..|++||+...    ..+
T Consensus       358 ~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~----~lv  430 (519)
T KOG0293|consen  358 HDLAITYDG-KYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDG-KLALVNLQDQEIHLWDLEEN----KLV  430 (519)
T ss_pred             EEEEEcCCC-cEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCC-cEEEEEcccCeeEEeecchh----hHH
Confidence            999999999 788888899999999988765554443 56789999999987 68888888999999999963    356


Q ss_pred             ceeecccCc--eeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCC
Q 009380          408 MKVLSHKRA--VHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTR  483 (536)
Q Consensus       408 ~~~~~~~~~--v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg  483 (536)
                      ....+|...  +-.-+|-- +..++++|+.|+.|+||+..+++++..+..+.     -++-+++|+|.. .++|+++.||
T Consensus       431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs-----~~vNcVswNP~~p~m~ASasDDg  505 (519)
T KOG0293|consen  431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS-----KTVNCVSWNPADPEMFASASDDG  505 (519)
T ss_pred             HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc-----ceeeEEecCCCCHHHhhccCCCC
Confidence            666777654  33334543 55799999999999999999999998874322     233448899965 5699999999


Q ss_pred             cEEEEcCCc
Q 009380          484 TVEVISPAQ  492 (536)
Q Consensus       484 ~I~v~d~~~  492 (536)
                      +|+||-...
T Consensus       506 tIRIWg~~~  514 (519)
T KOG0293|consen  506 TIRIWGPSD  514 (519)
T ss_pred             eEEEecCCc
Confidence            999997654

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=2.3e-27  Score=242.71  Aligned_cols=249  Identities=13%  Similarity=0.156  Sum_probs=190.8

Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe---------EEEeecCC
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV---------FDLVYSSE  324 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~---------~~~~~~~~  324 (536)
                      |+.++.|++|+...    ...+..+.+|.+.|.+++|+|+.+.+|++|+.||+|++||+.++.         ...+.+|.
T Consensus        50 GG~~gvI~L~~~~r----~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~  125 (568)
T PTZ00420         50 GGLIGAIRLENQMR----KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK  125 (568)
T ss_pred             CCceeEEEeeecCC----CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence            66788999999876    567888999999999999999844899999999999999997532         12345788


Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK  404 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~  404 (536)
                      ..|.+++|+|++..+|++++.|+.|++||+++++.+..+. |...|.+++|+|+| .+|++++.|+.|+|||++++.   
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~---  200 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQE---  200 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCc---
Confidence            9999999999986667899999999999999998777775 66889999999988 689999999999999999864   


Q ss_pred             CCcceeecccCceeE-----EEEccCCCeEEEEeCCC----cEEEEeCCC-CCcceEEeccCCCCceeeeeEEEEc-CCC
Q 009380          405 PEPMKVLSHKRAVHS-----AYFSPSGSSLATTSFDD----TIGIWSGVN-FENTSMIHHNNQTGRWISSFRAIWG-WDD  473 (536)
Q Consensus       405 ~~~~~~~~~~~~v~~-----l~~sp~g~~l~t~s~dg----~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s-~~g  473 (536)
                       .+..+.+|.+.+.+     ..|++++.+|++++.|+    +|+|||+++ .+++..+.+....+.    +...|. ++|
T Consensus       201 -~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~----L~p~~D~~tg  275 (568)
T PTZ00420        201 -IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP----LIPHYDESTG  275 (568)
T ss_pred             -EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc----eEEeeeCCCC
Confidence             44455678765433     34568889999988775    799999996 455555544433322    223344 458


Q ss_pred             CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCC
Q 009380          474 SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQ  517 (536)
Q Consensus       474 ~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~  517 (536)
                      .++++|+.|+.|++|++..+. +..+...........++|.|..
T Consensus       276 ~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        276 LIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             CEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            889999999999999998763 3444332222222356777743

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=3.9e-28  Score=247.63  Aligned_cols=273  Identities=17%  Similarity=0.261  Sum_probs=231.2

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      +...+.+..|+.    .++++++.+++|.+|+..+    ...+.. +.+|.+.|+++++..-+ .+|++|+.|.++++||
T Consensus       207 ~~~~~~~~q~~~----~~~~~~s~~~tl~~~~~~~----~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  207 DDHVVLCLQLHD----GFFKSGSDDSTLHLWDLNN----GYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWD  277 (537)
T ss_pred             Ccchhhhheeec----CeEEecCCCceeEEeeccc----ceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEe
Confidence            567788888874    6899999999999999998    666666 99999999999998744 9999999999999999


Q ss_pred             CCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          312 AEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       312 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      ..++.+...+ +|...|.++...+   ..+++|+.|.+|++|++.++..+..+.+|..+|++|..+  + .++++|+.|+
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~  351 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDG  351 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCc
Confidence            9999887666 5889999998865   478889999999999999999999999999999999998  3 6999999999


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC-CcceEEeccCCCCceeeeeEEEE
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-ENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      +|++||+.+++    .+..+.+|...|.++.+.+. .++++|+.|++|++||+.+. +++.++.+.....   ..    .
T Consensus       352 ~v~VW~~~~~~----cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v---~~----l  419 (537)
T KOG0274|consen  352 TVKVWDPRTGK----CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV---SS----L  419 (537)
T ss_pred             eEEEEEhhhce----eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc---cc----c
Confidence            99999999864    55566689999999988765 88999999999999999999 8888776544322   11    2


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ...+++|++++.|+.|++||..+++++..+.+.+...+ ..+.+.   ...+++++.||.+.+||+.
T Consensus       420 ~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v-~~l~~~---~~~il~s~~~~~~~l~dl~  482 (537)
T KOG0274|consen  420 LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGV-SALALG---KEEILCSSDDGSVKLWDLR  482 (537)
T ss_pred             ccccceeEeccccccEEEeecccCceeeeeccCCcccE-EEeecC---cceEEEEecCCeeEEEecc
Confidence            33567999999999999999999999999998533333 233432   3789999999999999974

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=2.3e-29  Score=226.03  Aligned_cols=280  Identities=12%  Similarity=0.175  Sum_probs=237.4

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---------cccccccCCceEEEEEEecCCccEE
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---------ENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---------~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      |...-++|..|+|||.+|+          +++.||.|.+|++....         ..-+-.+.+.|.|+.|+.  |..+|
T Consensus       211 g~KSh~EcA~FSPDgqyLv----------sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR--DsEMl  278 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLV----------SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR--DSEML  278 (508)
T ss_pred             ccccchhheeeCCCCceEe----------eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc--cHHHh
Confidence            4456789999999999999          55899999999973321         222345689999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFS  329 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~  329 (536)
                      |+|+.||.|++|.+.+    +.++..|. .|+..|+|+.|+.|+ ..+++++.|.++++.-+.+|++. .+.+|...|+.
T Consensus       279 AsGsqDGkIKvWri~t----G~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  279 ASGSQDGKIKVWRIET----GQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             hccCcCCcEEEEEEec----chHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            9999999999999998    78888887 899999999999999 99999999999999999998765 45689999999


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      ..|.++| +.+++++.||+|++|+..+.+++.+++  +..-+|+++...|.++..++.|....+|+|.++..      ++
T Consensus       354 a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------Qv  426 (508)
T KOG0275|consen  354 ATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------QV  426 (508)
T ss_pred             eEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------eE
Confidence            9999999 899999999999999999999999987  45568999999999999999999999999999875      33


Q ss_pred             ceee----cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          408 MKVL----SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       408 ~~~~----~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                      ...+    ...+...++..+|.|.++++.+.|+.++.|.+.+++...++......     .+.+.-+|..+.|++-+.||
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd-----vIGl~HHPHqNllAsYsEDg  501 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD-----VIGLTHHPHQNLLASYSEDG  501 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc-----ccccccCcccchhhhhcccc
Confidence            3333    23456778889999999999999999999999999887777532221     11244578888999999999


Q ss_pred             cEEEEc
Q 009380          484 TVEVIS  489 (536)
Q Consensus       484 ~I~v~d  489 (536)
                      .+++|.
T Consensus       502 llKLWk  507 (508)
T KOG0275|consen  502 LLKLWK  507 (508)
T ss_pred             hhhhcC
Confidence            999995

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.8e-28  Score=230.75  Aligned_cols=279  Identities=18%  Similarity=0.267  Sum_probs=227.4

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      .+.|++++|+|..--++.+|++  -.|.||+..+    .....++......|.+++|..|| .+|++|...|.|+|||+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~----~~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k   98 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVT----RSVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMK   98 (487)
T ss_pred             cCcceeEecCCCCCCceEEecc--cEEEEEecch----hhhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccc
Confidence            5789999999953334555555  4799999987    56667777788899999999999 999999999999999965


Q ss_pred             CC-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          314 KE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       314 ~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      +. .+..+..|..++..+.|+|.+..++++|+.|+.+++||+.+......+.+|++.|.|.+|+|.++++++|||.||.|
T Consensus        99 ~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~v  178 (487)
T KOG0310|consen   99 SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKV  178 (487)
T ss_pred             cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceE
Confidence            53 33456689999999999999988999999999999999999887668889999999999999988999999999999


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                      ++||+|...    .......|..+|.++.+-|.|..|++++. +.|+|||+.++........  .+...+++  +.+..+
T Consensus       179 rl~DtR~~~----~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~--~H~KtVTc--L~l~s~  249 (487)
T KOG0310|consen  179 RLWDTRSLT----SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF--NHNKTVTC--LRLASD  249 (487)
T ss_pred             EEEEeccCC----ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh--cccceEEE--EEeecC
Confidence            999999853    45566789999999999999999998874 5699999986544333221  12223555  456778


Q ss_pred             CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                      +..|++|+-|+.|++||+.+.+.+..+.-. . .+ .+++.+| +++.++.|-.||.+.+
T Consensus       250 ~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~-pv-Lsiavs~-dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  250 STRLLSGSLDRHVKVFDTTNYKVVHSWKYP-G-PV-LSIAVSP-DDQTVVIGMSNGLVSI  305 (487)
T ss_pred             CceEeecccccceEEEEccceEEEEeeecc-c-ce-eeEEecC-CCceEEEecccceeee
Confidence            899999999999999999888888777532 2 22 4677778 4589999999998765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=5.5e-28  Score=214.76  Aligned_cols=300  Identities=18%  Similarity=0.266  Sum_probs=235.8

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC---C-----Cce---EEeccCCCCEEEEEEecCCC
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE---D-----NGI---YLFRTHLGPISGIVTQQYCL  295 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~-----~~~---~~~~~h~~~V~~l~~~~~~~  295 (536)
                      ..+.+.|.+.|+++...+. .|+++++|+.||.|.+||++.....   +     .++   ..-.+|.-.|..+.|.|-..
T Consensus        36 ~d~~r~HgGsvNsL~id~t-egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   36 KDFVRPHGGSVNSLQIDLT-EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             cceeccCCCccceeeeccc-cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence            4556889999999999997 7899999999999999999864310   1     111   12236778899999999876


Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC--CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN--VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI  373 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i  373 (536)
                      .++.+++.|.+++|||.++.+....+..++.|.+-+++|-.  ..++++|..+-.|++.|+.+|...+++.+|.+.|.+|
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV  194 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV  194 (397)
T ss_pred             ceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence            89999999999999999999998899999999999998854  2577888899999999999999999999999999999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEeCCCCCC----------CCCCcce-eecccCceeEEEEccCCCeEEEEeCCCcEEEEe
Q 009380          374 DFNPRNPNIMATSSTDGTACIWDLRSMAT----------DKPEPMK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS  442 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~----------~~~~~~~-~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd  442 (536)
                      .|+|....+|++|+.||.|++||+|....          +.+..+. ...|.+.|+.++|..+|.++++++.|..+++|+
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            99999989999999999999999997521          2223333 346899999999999999999999999999999


Q ss_pred             CCCCCcceEE----eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCC
Q 009380          443 GVNFENTSMI----HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV  518 (536)
Q Consensus       443 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~  518 (536)
                      ..+++....-    .++...+..+.   +. +.+...++---.++.+.++++-++..+..+..|..... | ..+.| +-
T Consensus       275 ~~~G~ntl~~~g~~~~n~~~~~~~~---~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~-c-~~~~~-~f  347 (397)
T KOG4283|consen  275 MESGRNTLREFGPIIHNQTTSFAVH---IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN-C-AAYRP-DF  347 (397)
T ss_pred             cccCcccccccccccccccccceEE---Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceee-E-EeecC-ch
Confidence            9877644322    22222222222   11 22333344334458899999999999999988744333 3 34555 44


Q ss_pred             CEEEEEccCCeEEEEe
Q 009380          519 GTLAGATGGGQVYVWT  534 (536)
Q Consensus       519 ~~lasgs~Dg~v~iW~  534 (536)
                      +...+|..|+.|..|-
T Consensus       348 q~~~tg~~d~ni~~w~  363 (397)
T KOG4283|consen  348 EQCFTGDMNGNIYMWS  363 (397)
T ss_pred             hhhhccccCCcccccc
Confidence            7899999999999985

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.5e-28  Score=229.49  Aligned_cols=255  Identities=20%  Similarity=0.305  Sum_probs=210.3

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC------CCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE------DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD  304 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~------~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d  304 (536)
                      -.|.+.|+.+.+.|. +..+||+++..+.|.|||.......      ..+-..+.+|...-.+++|++.....|++++.|
T Consensus       121 i~h~gEVnRaRymPQ-np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQ-NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCC-CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            458999999999996 6678888999999999999764321      233347889998888999999887899999999


Q ss_pred             CeEEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC--CCccceeEeccCCCeEEEE
Q 009380          305 GLIRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR--SRKSATEWLLHEARINTID  374 (536)
Q Consensus       305 g~I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~i~  374 (536)
                      ++|++||+....        ...+.+|...|..++|++....+|++++.|+.+.|||+|  +.++.....+|...|+|++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            999999997532        234457899999999999988999999999999999999  5566777789999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcc----
Q 009380          375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT----  449 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~----  449 (536)
                      |+|.+..+|||||.|++|++||+|+.+   ..+..+.+|...|.+|.|+| ....|++++.|+.+.|||+......    
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            999999999999999999999999975   36667779999999999999 5578899999999999998643222    


Q ss_pred             --------eEEeccCCCCceeeeeEEEEcCCCCE-EEEEcCCCcEEEEcCCc
Q 009380          450 --------SMIHHNNQTGRWISSFRAIWGWDDSC-VFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       450 --------~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I~v~d~~~  492 (536)
                              ..|.|...+.   .+..+.|+|+... |++.+.|+.+.||....
T Consensus       357 da~dgppEllF~HgGH~~---kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  357 DAEDGPPELLFIHGGHTA---KVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             hhccCCcceeEEecCccc---ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence                    2244443332   3344779998776 77888999999998764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=8.9e-28  Score=225.68  Aligned_cols=290  Identities=16%  Similarity=0.194  Sum_probs=229.8

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-------------CCceEEe-ccCCCCEEEEEEec
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-------------DNGIYLF-RTHLGPISGIVTQQ  292 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-------------~~~~~~~-~~h~~~V~~l~~~~  292 (536)
                      ..+...|.-+|++|+++|  +..++++++++|+|.-|++.++...             +.....- ..|...|.+++.++
T Consensus       135 ~~~~~~H~~s~~~vals~--d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSP--DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             ceeeccccCcceEEEeec--cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            355678999999999999  9999999999999999999875321             0011111 37889999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeE
Q 009380          293 YCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARIN  371 (536)
Q Consensus       293 ~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~  371 (536)
                      |+ .+|++|+.|..|.||+.++...... .+|.+.|.+++|.... +.+++++.|+.|++|++.....+.++.+|.+.|.
T Consensus       213 Dg-kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~  290 (479)
T KOG0299|consen  213 DG-KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVL  290 (479)
T ss_pred             CC-cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence            99 9999999999999999999877665 5788999999998765 7899999999999999999999999999999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE
Q 009380          372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM  451 (536)
Q Consensus       372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~  451 (536)
                      +|....-+ ..+.+|+.|+++++|++..     ...+.+.+|.+.+.|++|-.+ ..|++|+.+|.|.+|++...+++.+
T Consensus       291 ~IdaL~re-R~vtVGgrDrT~rlwKi~e-----esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~  363 (479)
T KOG0299|consen  291 GIDALSRE-RCVTVGGRDRTVRLWKIPE-----ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFT  363 (479)
T ss_pred             eechhccc-ceEEeccccceeEEEeccc-----cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeE
Confidence            99888654 5777777999999999955     244556689999999999854 5699999999999999999888887


Q ss_pred             Ee--ccCCCC-------ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc----ccceeccCCceeeeeeeEeecCCCC
Q 009380          452 IH--HNNQTG-------RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR----RSVATLQSPYISAIPCRFHAHPHQV  518 (536)
Q Consensus       452 ~~--~~~~~~-------~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~----~~~~~l~~~~~~~~~~~~~~~p~~~  518 (536)
                      ..  |.....       .|++.  ++-.|...++++|+.+|.|++|-+..+    +++..+.   .....+.++|.++ +
T Consensus       364 ~~~AHgv~~~~~~~~~~~Wits--la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~s-g  437 (479)
T KOG0299|consen  364 SRLAHGVIPELDPVNGNFWITS--LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLAFSNS-G  437 (479)
T ss_pred             eeccccccCCccccccccceee--eEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEEEccC-C
Confidence            74  322222       26666  445688889999999999999999887    2333333   2233467788774 4


Q ss_pred             C-EEEEEccCCeEEEE
Q 009380          519 G-TLAGATGGGQVYVW  533 (536)
Q Consensus       519 ~-~lasgs~Dg~v~iW  533 (536)
                      . +++..+....+-=|
T Consensus       438 k~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  438 KRIVAGIGKEHRLGRW  453 (479)
T ss_pred             CEEEEeccccccccee
Confidence            5 55555555444444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1e-27  Score=223.46  Aligned_cols=282  Identities=18%  Similarity=0.249  Sum_probs=233.3

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...|+++...|  ....+++|+.|.++.++|...    ...+..+.||...|+.+.|+|+. ..+++++.|..|+||...
T Consensus       219 ~pgi~ald~~~--s~~~ilTGG~d~~av~~d~~s----~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~  291 (506)
T KOG0289|consen  219 TPGITALDIIP--SSSKILTGGEDKTAVLFDKPS----NQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVP  291 (506)
T ss_pred             CCCeeEEeecC--CCCcceecCCCCceEEEecch----hhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccc
Confidence            35688888888  678999999999999999998    78899999999999999999998 999999999999999987


Q ss_pred             CC-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          314 KE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       314 ~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      .. .......|+.+|+.+..+|.+ .+|++++.||+..+.|++++..+.....  ..-.+++..||||| .+|.+|..||
T Consensus       292 ~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~  369 (506)
T KOG0289|consen  292 LSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDG  369 (506)
T ss_pred             cccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCc
Confidence            65 444566799999999999999 8999999999999999999988766552  23458999999998 8999999999


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG  470 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  470 (536)
                      .|+|||+....    ....+.+|.++|..++|+.+|-+|++++.|+.|++||++..+...++......  .+..  +.|.
T Consensus       370 ~vkiwdlks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~--~v~s--~~fD  441 (506)
T KOG0289|consen  370 VVKIWDLKSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK--EVNS--LSFD  441 (506)
T ss_pred             eEEEEEcCCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc--ccee--EEEc
Confidence            99999999853    56677789999999999999999999999999999999998888777543322  2333  6789


Q ss_pred             CCCCEEEEEcCCCcEEEEcCC--ccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          471 WDDSCVFIGNMTRTVEVISPA--QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~--~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +.|.+|++++.+=.|++++-.  +...+..+..|.  .....+.|... ..++++++.|..++|+.+
T Consensus       442 ~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~-aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  442 QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEH-AQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeeccc-ceEEeeccchhheEEeec
Confidence            999999999877666666633  344555554433  22234556543 489999999999999865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.4e-28  Score=218.98  Aligned_cols=301  Identities=14%  Similarity=0.172  Sum_probs=244.6

Q ss_pred             cccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccE
Q 009380          172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRM  250 (536)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~  250 (536)
                      .+.+..-+.||.|+|+.+.......++.          +.+.|.+..||.+..... ....+|.+.|++++|++  .+.+
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~g----------tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~--s~~L  204 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICG----------TASADHTARIWSLESGACLATYTGHTGSVNSIKFHN--SGLL  204 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCccee----------ecccccceeEEeeccccceeeecccccceeeEEecc--ccce
Confidence            4677888999999999998877776555          457888999999866544 34688999999999999  9999


Q ss_pred             EEEEeCCCcEEEEECC------CC--------CC----------------------CCCceEEeccCCCCEEEEEEecCC
Q 009380          251 VVAGSKLGNITFWNLD------SQ--------QD----------------------EDNGIYLFRTHLGPISGIVTQQYC  294 (536)
Q Consensus       251 l~tg~~dg~v~iwd~~------~~--------~~----------------------~~~~~~~~~~h~~~V~~l~~~~~~  294 (536)
                      +++++.|++..||...      ..        ++                      ...++..+.+|.+.|.+..|...+
T Consensus       205 ~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg  284 (481)
T KOG0300|consen  205 LLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG  284 (481)
T ss_pred             EEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc
Confidence            9999999999999721      10        00                      012456788999999999999888


Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEE
Q 009380          295 LSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINT  372 (536)
Q Consensus       295 ~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~  372 (536)
                       +.+++++.|.+-.+||++++.... +.+|+...+.++-+|.. .++++.+.|.+.++||++.. ..+..|++|.+.|++
T Consensus       285 -~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS  362 (481)
T KOG0300|consen  285 -QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS  362 (481)
T ss_pred             -ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence             999999999999999999997765 45799999999999997 89999999999999999953 337789999999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      +.|.-+.  .+++|+.|.+|+|||++++.    .++.......+++.++.+..+..|+.-..+..|++||+.... +..+
T Consensus       363 ~vF~~dd--~vVSgSDDrTvKvWdLrNMR----splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRl  435 (481)
T KOG0300|consen  363 VVFNTDD--RVVSGSDDRTVKVWDLRNMR----SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARL  435 (481)
T ss_pred             EEEecCC--ceeecCCCceEEEeeecccc----CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCc-cccC
Confidence            9999854  69999999999999999975    566677788899999999888888888888899999996543 4444


Q ss_pred             eccCCCCceeeeeEEEEcCCCC--EEEEEcCCCcEEEEcCCcc
Q 009380          453 HHNNQTGRWISSFRAIWGWDDS--CVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       453 ~~~~~~~~~~~~~~~~~s~~g~--~l~~gs~dg~I~v~d~~~~  493 (536)
                      +.....++.-...+++|..+..  -|++++.|+.+.-|.+...
T Consensus       436 PrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  436 PRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            4333444444455578876543  4888999999999988654

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=1.9e-27  Score=208.17  Aligned_cols=275  Identities=19%  Similarity=0.183  Sum_probs=238.2

Q ss_pred             ecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      +.+|...|..+.+.-+|..++          ++..|+.+.+|++...   .....++|.+.|-.++|+|. ..+++++++
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~la----------sgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas   84 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLA----------SGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATAS   84 (313)
T ss_pred             hhhhhhcceEEEEcccCceee----------ecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEec
Confidence            578889999999999999999          4588899999997543   23456789999999999986 567999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~  335 (536)
                      .|.+|++||...    .++........+.| -+.|+|+| .+++.++.|..|...|.++.+....+.....+..++|+.+
T Consensus        85 ~dk~ir~wd~r~----~k~~~~i~~~~eni-~i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~  158 (313)
T KOG1407|consen   85 GDKTIRIWDIRS----GKCTARIETKGENI-NITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNS  158 (313)
T ss_pred             CCceEEEEEecc----CcEEEEeeccCcce-EEEEcCCC-CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCC
Confidence            999999999998    77887777666666 47899999 9999999999999999999888888888888999999965


Q ss_pred             CCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR  415 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~  415 (536)
                      + ++++.....|+|.|.....-+++..++.|.....||.|.|+| .+||+|+.|-.+.+||+...-    ....+..+.-
T Consensus       159 n-d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi----C~R~isRldw  232 (313)
T KOG1407|consen  159 N-DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI----CERCISRLDW  232 (313)
T ss_pred             C-CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh----hheeeccccC
Confidence            5 777777788999999999999999999999999999999988 799999999999999998752    2233447889


Q ss_pred             ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC
Q 009380          416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT  482 (536)
Q Consensus       416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d  482 (536)
                      +|..++|+.+|++||+++.|..|-|=++.++..+..+++..++      +.++|+|...+|+-+..|
T Consensus       233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t------~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPT------FTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCc------eeEEecCCCceeeEEecC
Confidence            9999999999999999999999999999999999999776643      448999999888877655

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.5e-27  Score=234.51  Aligned_cols=271  Identities=17%  Similarity=0.236  Sum_probs=224.7

Q ss_pred             EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE
Q 009380          239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD  318 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~  318 (536)
                      -+.|+.   .+.|++|.. ..|++|+..+    +........+...|+++.|+++| .+|++|..+|.|.|||..+.+..
T Consensus       182 lldWss---~n~laValg-~~vylW~~~s----~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  182 LLDWSS---ANVLAVALG-QSVYLWSASS----GSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKT  252 (484)
T ss_pred             Hhhccc---CCeEEEEec-ceEEEEecCC----CceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcccc
Confidence            466774   356777653 5899999987    44444444458899999999999 99999999999999999876443


Q ss_pred             -Eeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          319 -LVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       319 -~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                       .+.. |...|.+++|..   ..+.+|+.+|.|..+|++..+.... +.+|...|..+.|++++ +++|+|+.|+.+.||
T Consensus       253 ~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iw  328 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIW  328 (484)
T ss_pred             ccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEec
Confidence             3334 789999999983   6899999999999999998877544 88999999999999988 799999999999999


Q ss_pred             eCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          396 DLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                      |....    ...+.+..|...|..++|+| ...+||+|+  .|++|++||..++..+..+    .++..+..  +.|++.
T Consensus       329 d~~~~----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcs--L~Wsk~  398 (484)
T KOG0305|consen  329 DGLSP----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCS--LIWSKK  398 (484)
T ss_pred             cCCCc----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceee--EEEcCC
Confidence            99653    46777889999999999999 667888875  6999999999988888777    34444555  779998


Q ss_pred             CCEEEE--EcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          473 DSCVFI--GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       473 g~~l~~--gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .+-|++  |..++.|.||+..+.+.+..+.+|...+  ..++++| ++..+++|+.|.+|++|++
T Consensus       399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV--l~la~SP-dg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  399 YKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV--LYLALSP-DGETIVTGAADETLRFWNL  460 (484)
T ss_pred             CCEEEEecCCCCCcEEEEeccccceeeeecCCccee--EEEEECC-CCCEEEEecccCcEEeccc
Confidence            766555  4556789999999999999998877664  4788999 6899999999999999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=2.1e-27  Score=221.35  Aligned_cols=268  Identities=19%  Similarity=0.265  Sum_probs=220.2

Q ss_pred             cccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC
Q 009380          206 VKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP  284 (536)
Q Consensus       206 ~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~  284 (536)
                      .++++++.|..+.++|...+. ..++++|...|+.+.|+|  +...+++++.|-.|+||....    .........|..+
T Consensus       232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~--~~~~v~~aSad~~i~vws~~~----~s~~~~~~~h~~~  305 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK--DLDTVITASADEIIRVWSVPL----SSEPTSSRPHEEP  305 (506)
T ss_pred             CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc--chhheeecCCcceEEeecccc----ccCcccccccccc
Confidence            445678888889999975443 356789999999999999  889999999999999999987    5677788899999


Q ss_pred             EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC---CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce
Q 009380          285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE---YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT  361 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~  361 (536)
                      |+.+..+|.| .||++++.||+..+.|++++.......++   -.+++.+|+||| .+|.+|+.||.|+|||+.++..+.
T Consensus       306 V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a  383 (506)
T KOG0289|consen  306 VTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVA  383 (506)
T ss_pred             ceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccc
Confidence            9999999999 99999999999999999999877666553   458999999999 899999999999999999999999


Q ss_pred             eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380          362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW  441 (536)
Q Consensus       362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw  441 (536)
                      .|.+|.++|..|+|+.+| ++|++++.|+.|++||+|+.+..  ..+ .......+.++.|++.|.+|+.++.|=+|+++
T Consensus       384 ~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~--kt~-~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~  459 (506)
T KOG0289|consen  384 KFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF--KTI-QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC  459 (506)
T ss_pred             cCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc--cee-eccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence            999999999999999866 99999999999999999996521  111 11334479999999999999999887777777


Q ss_pred             eCC--CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          442 SGV--NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       442 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      +-.  ++..+..+...  .+ ..+  .+.|....++++++++|..++++.+
T Consensus       460 ~k~~k~W~~~~~~~~~--sg-~st--~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  460 KKKTKSWTEIKELADH--SG-LST--GVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ecccccceeeehhhhc--cc-ccc--eeeecccceEEeeccchhheEEeec
Confidence            633  33333333211  11 112  2668888899999999999988864

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=241.76  Aligned_cols=266  Identities=17%  Similarity=0.185  Sum_probs=224.9

Q ss_pred             cccccceEEecccccCc-ccc-ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          210 KIEVGSCVDIGSLTLKP-ENI-ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~-~~~-~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      .+..++.|++|+..... ... +.+|.+.|.++++..  .+.+|++|+.|.++++||..+    +.+...+.+|...|.+
T Consensus       223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~s----g~C~~~l~gh~stv~~  296 (537)
T KOG0274|consen  223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCST----GECTHSLQGHTSSVRC  296 (537)
T ss_pred             ecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCC----CcEEEEecCCCceEEE
Confidence            45677899999974332 233 578999999999986  688999999999999999888    8999999999999999


Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH  366 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h  366 (536)
                      +...+   .++++|+.|.+|++|+++++.+..+.. |..+|.++..+  + .++++|+.||+|.+||+.+++++..+.+|
T Consensus       297 ~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH  370 (537)
T KOG0274|consen  297 LTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGH  370 (537)
T ss_pred             EEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCC
Confidence            98876   678999999999999999998888877 99999999998  3 69999999999999999999999999999


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      ...|.++.+.+.  ..+++|+.|++|++||+++..   .....+.+|..-+..+.+  .+++|++++.|++|++||..++
T Consensus       371 ~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~  443 (537)
T KOG0274|consen  371 TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG  443 (537)
T ss_pred             cceEEEEEecCc--ceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC
Confidence            999999988753  689999999999999999852   245555678888876666  5788999999999999999999


Q ss_pred             CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      ++..++....  ...+..  +++.  ...+++++.++.+.+||+.++.....+-
T Consensus       444 ~~~~~~~~~~--~~~v~~--l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~  491 (537)
T KOG0274|consen  444 ECLRTLEGRH--VGGVSA--LALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL  491 (537)
T ss_pred             ceeeeeccCC--cccEEE--eecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence            9999886541  112232  2222  4678999999999999999998887763

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=4.6e-27  Score=210.98  Aligned_cols=269  Identities=18%  Similarity=0.270  Sum_probs=211.0

Q ss_pred             EEEEEeCCCcEEEEECCCCC----C----CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-EEEe
Q 009380          250 MVVAGSKLGNITFWNLDSQQ----D----EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-FDLV  320 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~----~----~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-~~~~  320 (536)
                      .|++|++...|.=+++....    .    ...+++.+..|.++|++++.+.   .++++||.|-+|+|||+.+.. ...+
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~l   79 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGIL   79 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcce
Confidence            36778888777777765432    0    1234678889999999999974   899999999999999998764 4566


Q ss_pred             ecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          321 YSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       321 ~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      ..|.+.|+++.|.+.- .+.|++|+.||.|.+|+.....++..+++|.+.|+.++.||.+ .+.++.+.|+.++.|++-.
T Consensus        80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen   80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhc
Confidence            7889999999998764 2379999999999999999999999999999999999999987 7888999999999999998


Q ss_pred             CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380          400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                      ++...     ........+.+.|+|.|.+++.++.++ |-||.+.+-.....+...      ...+++.|- ++.+|++|
T Consensus       159 Gr~a~-----v~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~------~r~l~~~~l-~~~~L~vG  225 (362)
T KOG0294|consen  159 GRVAF-----VLNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP------KRILCATFL-DGSELLVG  225 (362)
T ss_pred             Cccce-----eeccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc------ccceeeeec-CCceEEEe
Confidence            75221     122223334499999999999988765 999988766555444322      122224343 56789999


Q ss_pred             cCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          480 NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       480 s~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ..|+.|.+||..+..++..+.+|...+....+.-.| ++.+|+++++||.|+|||++
T Consensus       226 ~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~-~~~~lvTaSSDG~I~vWd~~  281 (362)
T KOG0294|consen  226 GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNP-EHEYLVTASSDGFIKVWDID  281 (362)
T ss_pred             cCCceEEEeccCCCccceeeecchhheeeeEEEecC-CceEEEEeccCceEEEEEcc
Confidence            999999999999988888888877666543333344 56899999999999999985

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=214.37  Aligned_cols=285  Identities=17%  Similarity=0.194  Sum_probs=232.6

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      ..+.+|.+.|+.++...  ..+++.+++.|.+.+||.+++    +.++..+.+|.+.|++|.|++.+ .++++++.|++-
T Consensus       142 re~~GHkDGiW~Vaa~~--tqpi~gtASADhTA~iWs~Es----g~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~ta  214 (481)
T KOG0300|consen  142 RELEGHKDGIWHVAADS--TQPICGTASADHTARIWSLES----GACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETA  214 (481)
T ss_pred             hhhcccccceeeehhhc--CCcceeecccccceeEEeecc----ccceeeecccccceeeEEecccc-ceEEEccCCcch
Confidence            34578999999999987  778999999999999999998    89999999999999999999998 999999999999


Q ss_pred             EEEEC------CCC-----------------------------------eEEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380          308 RLMDA------EKE-----------------------------------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ  346 (536)
Q Consensus       308 ~vwd~------~~~-----------------------------------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d  346 (536)
                      .||..      ...                                   .+..+.+|...|.+..|...+ ..++++++|
T Consensus       215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg-~Q~vTaSWD  293 (481)
T KOG0300|consen  215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG-QQMVTASWD  293 (481)
T ss_pred             HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc-ceeeeeecc
Confidence            99972      110                                   012344678889999999877 899999999


Q ss_pred             CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC
Q 009380          347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG  426 (536)
Q Consensus       347 g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g  426 (536)
                      .+-.+||++++..+..+.+|....+.++-+|.. .++++++.|-+.++||++..   -..+..+.+|...|+++.|.-+.
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC
Confidence            999999999999999999999999999999966 79999999999999999953   23445566999999999999765


Q ss_pred             CeEEEEeCCCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc-----
Q 009380          427 SSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ-----  500 (536)
Q Consensus       427 ~~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~-----  500 (536)
                      + +++|+.|.+|+|||++++. ++.++.......+      ++.+..+..|+.--.++.|++||+++.+ +..++     
T Consensus       370 ~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NR------vavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRq  441 (481)
T KOG0300|consen  370 R-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANR------VAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQ  441 (481)
T ss_pred             c-eeecCCCceEEEeeeccccCcceeeecCCccce------eEeecCCceEEeccCCceEEEEecCCCc-cccCCccccc
Confidence            4 9999999999999999874 5666655443322      4446667788888888999999998764 44443     


Q ss_pred             CCceeeeeeeEee---cCCCCCEEEEEccCCeEEEEecC
Q 009380          501 SPYISAIPCRFHA---HPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       501 ~~~~~~~~~~~~~---~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +|...+.  +.+|   ||-  .-|.+++.|..+.=|+++
T Consensus       442 gHrRMV~--c~AW~eehp~--cnLftcGFDR~v~gW~in  476 (481)
T KOG0300|consen  442 GHRRMVT--CCAWLEEHPA--CNLFTCGFDRMVAGWKIN  476 (481)
T ss_pred             ccceeee--eeeccccCcc--cccccccccceeeeeEec
Confidence            3433333  3444   342  468899999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=2.6e-27  Score=244.29  Aligned_cols=290  Identities=17%  Similarity=0.256  Sum_probs=230.0

Q ss_pred             CCceEEEEEEecCCccEEEEEe--CCCcEEEEECCCCCC--------CCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGS--KLGNITFWNLDSQQD--------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~--~dg~v~iwd~~~~~~--------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      ...|+++..+|  ++..++||+  .||.++||+.+.-..        ....+.....|.+.|+|+.|+||| .+||+||.
T Consensus        13 ~~~IfSIdv~p--dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSD   89 (942)
T KOG0973|consen   13 EKSIFSIDVHP--DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSD   89 (942)
T ss_pred             CeeEEEEEecC--CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccC
Confidence            56699999999  999999999  999999999864210        134566778899999999999999 99999999


Q ss_pred             CCeEEEEECCC----C---------------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe
Q 009380          304 DGLIRLMDAEK----E---------------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL  364 (536)
Q Consensus       304 dg~I~vwd~~~----~---------------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  364 (536)
                      |+.|.||....    .               .+..+.+|+..|..++|+|++ .+|++++.|++|.+||.++.+.+..+.
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEccccceeeeeee
Confidence            99999999872    0               234456899999999999988 899999999999999999999999999


Q ss_pred             ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC--CCcceeecccCceeEEEEccCCCeEEEEeC----CCcE
Q 009380          365 LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK--PEPMKVLSHKRAVHSAYFSPSGSSLATTSF----DDTI  438 (536)
Q Consensus       365 ~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~----dg~I  438 (536)
                      +|...|..+.|.|-| ++||+-+.|++|+||++.+.....  ..+.........+..+.|||||++|++...    -.++
T Consensus       169 ~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~  247 (942)
T KOG0973|consen  169 GHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI  247 (942)
T ss_pred             cccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence            999999999999988 799999999999999976632111  111111223456788999999999998753    3458


Q ss_pred             EEEeCCCCCcceEE-eccCCCCceeeeeEEEEcC-----C--------CC----EEEEEcCCCcEEEEcCCccccceecc
Q 009380          439 GIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGW-----D--------DS----CVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       439 ~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~-----~--------g~----~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      .|.+-.+++.-..+ .|..+    +.+  +.|+|     .        ..    .+|+|+.|++|.||.....+++..+.
T Consensus       248 ~IieR~tWk~~~~LvGH~~p----~ev--vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~  321 (942)
T KOG0973|consen  248 AIIERGTWKVDKDLVGHSAP----VEV--VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH  321 (942)
T ss_pred             EEEecCCceeeeeeecCCCc----eEE--EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhh
Confidence            88887777654444 44332    222  44555     1        11    68899999999999998888876665


Q ss_pred             CCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          501 SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       501 ~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .-....+ ..++|+| ||-.|..+|.||+|.+..++
T Consensus       322 ~lf~~SI-~DmsWsp-dG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  322 NLFNKSI-VDMSWSP-DGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             hhhcCce-eeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence            4344444 5899999 78999999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.1e-26  Score=207.55  Aligned_cols=251  Identities=18%  Similarity=0.252  Sum_probs=203.5

Q ss_pred             CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEEC--CCeE
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG--QGGL  349 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~--dg~i  349 (536)
                      .....+....+.|.++.|+++| ..|++++.|.+|++||..+++...... ....+..++|.... +.++.++.  |.+|
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTI   82 (311)
T ss_pred             ccccccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCce
Confidence            3445566667889999999999 999999999999999999987765554 55688888887766 55655555  7899


Q ss_pred             EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380          350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l  429 (536)
                      +..++.+.+.++.|.+|...|++++.+|-+ ..|++++.|++|++||+|..+     +.... +...-..++|+|.|-++
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~-----cqg~l-~~~~~pi~AfDp~GLif  155 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK-----CQGLL-NLSGRPIAAFDPEGLIF  155 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC-----CceEE-ecCCCcceeECCCCcEE
Confidence            999999999999999999999999999976 799999999999999999743     22222 22333458999999999


Q ss_pred             EEEeCCCcEEEEeCCCC--CcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceee
Q 009380          430 ATTSFDDTIGIWSGVNF--ENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISA  506 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~  506 (536)
                      |++...+.|++||++..  .+..++... .....|-.   +.|||||++++.++..+.+++.|.-+|..+.++..+....
T Consensus       156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~---l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTD---LEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             EEecCCCeEEEEEecccCCCCceeEccCCCCccceee---eEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence            99998889999999976  345555443 22233322   7799999999999999999999999999988888754433


Q ss_pred             -eeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          507 -IPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       507 -~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                       .+...+|.| |+.++++|+.||+|++|+++
T Consensus       233 ~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  233 NLPLSATFTP-DSKFVLSGSDDGTIHVWNLE  262 (311)
T ss_pred             CcceeEEECC-CCcEEEEecCCCcEEEEEcC
Confidence             456788889 78999999999999999974

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.2e-26  Score=194.46  Aligned_cols=289  Identities=15%  Similarity=0.138  Sum_probs=221.2

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC------C--CCC---ceEEeccCCCCEEEEEEecCCCCEEEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ------D--EDN---GIYLFRTHLGPISGIVTQQYCLSKIFTSC  302 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~------~--~~~---~~~~~~~h~~~V~~l~~~~~~~~~l~s~s  302 (536)
                      ...|.+++|+|  .|.+.++|+...+++|-....-.      +  ...   ....-+.|.+.|.|.+|+|+| .+|++|+
T Consensus        32 sqairav~fhp--~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g-eliatgs  108 (350)
T KOG0641|consen   32 SQAIRAVAFHP--AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGS  108 (350)
T ss_pred             hhheeeEEecC--CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc-CeEEecC
Confidence            45699999999  99999999999999987543210      0  011   123445789999999999999 9999999


Q ss_pred             CCCeEEEEECCCCe------EEEeecCCCceeEEEecCC---CCCEEEEEE-CCCeEEEEECCCCccceeEeccCCCeEE
Q 009380          303 YDGLIRLMDAEKEV------FDLVYSSEYAVFSLSQQPN---NVNTLYFGE-GQGGLNIWDVRSRKSATEWLLHEARINT  372 (536)
Q Consensus       303 ~dg~I~vwd~~~~~------~~~~~~~~~~i~~l~~~~~---~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~~~i~~  372 (536)
                      .|.+|++.-++...      -..+.-|++.|..++|..+   +..+|++++ .|..|++-|-..|+..+.+.+|.+.|.+
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila  188 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA  188 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence            99999998776533      2345568899999999643   335666654 5788999999999999999999999987


Q ss_pred             E-EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec---ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          373 I-DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS---HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       373 i-~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~---~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      + .|+  + .+|++|+.|.+|++||+|-..+....-..+.+   ....|.+++..|.|++|++|..|....+||++.+..
T Consensus       189 lyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  189 LYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            7 454  4 69999999999999999975432211111111   235789999999999999999999999999999988


Q ss_pred             ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc----cceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380          449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~----~~~~l~~~~~~~~~~~~~~~p~~~~~lasg  524 (536)
                      ++.+....   ..+.+  +.|+|...|+++++.|..|++-|+...-    .+..+..|...++  .+.|||.+ --+++.
T Consensus       266 iq~f~phs---adir~--vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i--~~rwh~~d-~sfiss  337 (350)
T KOG0641|consen  266 IQRFHPHS---ADIRC--VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAI--QCRWHPQD-FSFISS  337 (350)
T ss_pred             eeeeCCCc---cceeE--EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceE--EEEecCcc-ceeeec
Confidence            88774322   23343  6699999999999999999999987641    1222233444454  56899976 778999


Q ss_pred             ccCCeEEEEecC
Q 009380          525 TGGGQVYVWTSD  536 (536)
Q Consensus       525 s~Dg~v~iW~~d  536 (536)
                      +.|.++.+|-++
T Consensus       338 sadkt~tlwa~~  349 (350)
T KOG0641|consen  338 SADKTATLWALN  349 (350)
T ss_pred             cCcceEEEeccC
Confidence            999999999763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.2e-26  Score=205.45  Aligned_cols=281  Identities=15%  Similarity=0.139  Sum_probs=219.6

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ..-.+.|.+|+|||. ...++++|+.||+|++|+++...  ...-.....|.++|.+++|+.+| ..+++|+.|+.+++|
T Consensus        24 ~pP~DsIS~l~FSP~-~~~~~~A~SWD~tVR~wevq~~g--~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQ-ADNLLAAGSWDGTVRIWEVQNSG--QLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLW   99 (347)
T ss_pred             CCcccchheeEeccc-cCceEEecccCCceEEEEEecCC--cccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEE
Confidence            344678999999994 55678899999999999998742  12225667799999999999999 999999999999999


Q ss_pred             ECCCCeEEEeecCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380          311 DAEKEVFDLVYSSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       311 d~~~~~~~~~~~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      |+.+++...+-.|+.+|.++.|-+... .+|++|++|.+|+.||+|...++.+++ ..+.++++..-.   -+++.+..+
T Consensus       100 DL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~  175 (347)
T KOG0647|consen  100 DLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLY---PMAVVATAE  175 (347)
T ss_pred             EccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccC---ceeEEEecC
Confidence            999999999999999999999987651 389999999999999999999998887 467788887753   367778889


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC--CcceEEeccCC---CCc-eee
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF--ENTSMIHHNNQ---TGR-WIS  463 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~--~~~~~~~~~~~---~~~-~~~  463 (536)
                      +.|.+|+|+++....  ........-.+.||+..++....+.|+-.|.+.|..+...  +.-..++.+..   ... ...
T Consensus       176 r~i~vynL~n~~te~--k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa  253 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEF--KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA  253 (347)
T ss_pred             CcEEEEEcCCCcchh--hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence            999999998753111  1111234567899999998888899999999999999876  33344432221   111 233


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg  524 (536)
                      +-.++|+|.-..|++.+.||++.+||-.....+.+.+.+...+.+|  +|+. +|.++|-+
T Consensus       254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc--~fn~-~G~ifaYA  311 (347)
T KOG0647|consen  254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC--SFNR-NGSIFAYA  311 (347)
T ss_pred             ecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee--EecC-CCCEEEEE
Confidence            3457899998899999999999999998888888877766666544  4443 46666644

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.9e-27  Score=230.86  Aligned_cols=262  Identities=17%  Similarity=0.244  Sum_probs=222.2

Q ss_pred             cccceEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEE
Q 009380          212 EVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIV  289 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~  289 (536)
                      +.+..|+||+-...... +...+.+.|+++.|++  +|.+|++|..+|.|.|||...    ...+..+.+ |...|.+++
T Consensus       194 alg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~--~G~~LavG~~~g~v~iwD~~~----~k~~~~~~~~h~~rvg~la  267 (484)
T KOG0305|consen  194 ALGQSVYLWSASSGSVTELCSFGEELVTSVKWSP--DGSHLAVGTSDGTVQIWDVKE----QKKTRTLRGSHASRVGSLA  267 (484)
T ss_pred             EecceEEEEecCCCceEEeEecCCCceEEEEECC--CCCEEEEeecCCeEEEEehhh----ccccccccCCcCceeEEEe
Confidence            34458999997555532 3344489999999999  999999999999999999987    677888888 999999999


Q ss_pred             EecCCCCEEEEEECCCeEEEEECCCCeEE--EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC
Q 009380          290 TQQYCLSKIFTSCYDGLIRLMDAEKEVFD--LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE  367 (536)
Q Consensus       290 ~~~~~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~  367 (536)
                      |+.   ..+.+|+.|+.|..+|++.....  ...+|...|..+.|++++ +++++|+.|+.+.|||.....+...+..|.
T Consensus       268 W~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~  343 (484)
T KOG0305|consen  268 WNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPKFTFTEHT  343 (484)
T ss_pred             ccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCccccEEEeccc
Confidence            993   78999999999999999875432  255789999999999999 899999999999999998888999999999


Q ss_pred             CCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeC
Q 009380          368 ARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSG  443 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~  443 (536)
                      ..|..++|+|....+||+|+  .|+.|++||..++     ..+........|.++.|++..+-|+++.  .++.|.||+.
T Consensus       344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-----~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-----ARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-----cEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            99999999999888999986  5899999999986     3455556788999999999887777654  5678999999


Q ss_pred             CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      .+.+.+..+..     +...++.++++|||..+++|+.|.++++|++-+.
T Consensus       419 ps~~~~~~l~g-----H~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  419 PSMKLVAELLG-----HTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cccceeeeecC-----CcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            98777766532     1223556889999999999999999999998775

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=4.1e-26  Score=204.64  Aligned_cols=275  Identities=16%  Similarity=0.179  Sum_probs=218.2

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      ...+.|++|.|+|  .+..|++++.||.+++|++..    . .+...-.|..++.+++|.++  ..+++|+.||.|+.+|
T Consensus        11 pP~d~IS~v~f~~--~~~~LLvssWDgslrlYdv~~----~-~l~~~~~~~~plL~c~F~d~--~~~~~G~~dg~vr~~D   81 (323)
T KOG1036|consen   11 PPEDGISSVKFSP--SSSDLLVSSWDGSLRLYDVPA----N-SLKLKFKHGAPLLDCAFADE--STIVTGGLDGQVRRYD   81 (323)
T ss_pred             CChhceeeEEEcC--cCCcEEEEeccCcEEEEeccc----h-hhhhheecCCceeeeeccCC--ceEEEeccCceEEEEE
Confidence            3357899999998  778888899999999999986    3 33444458999999999985  6899999999999999


Q ss_pred             CCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          312 AEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ++++....+-.|..+|.||.+.+.. +.+++|++|++|++||.+.......+. ....|.++...  + +.|+.|+.|..
T Consensus        82 ln~~~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g-~~LvVg~~~r~  156 (323)
T KOG1036|consen   82 LNTGNEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--G-NRLVVGTSDRK  156 (323)
T ss_pred             ecCCcceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--C-CEEEEeecCce
Confidence            9999999999999999999999876 799999999999999999866666665 45589999887  3 67888889999


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC----CcceEEe-ccC---CCCceee
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF----ENTSMIH-HNN---QTGRWIS  463 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~----~~~~~~~-~~~---~~~~~~~  463 (536)
                      |.+||+|+...  .........+..+.++++-|++.=+++++-||.|.+=.+...    +....+. |..   .......
T Consensus       157 v~iyDLRn~~~--~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  157 VLIYDLRNLDE--PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             EEEEEcccccc--hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence            99999999752  222233356778999999998888999999999888666544    2333332 211   1111122


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      +-.++|+|-...|++|+.||.|.+||..+.+.+.++.....++.  .++|+- +|..||.++
T Consensus       235 VNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~--slsfs~-dG~~LAia~  293 (323)
T KOG1036|consen  235 VNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSIS--SLSFSM-DGSLLAIAS  293 (323)
T ss_pred             eceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceE--EEEecc-CCCeEEEEe
Confidence            23478999988999999999999999999999988876544443  566665 688999886

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.96  E-value=2.8e-27  Score=222.42  Aligned_cols=249  Identities=19%  Similarity=0.287  Sum_probs=202.7

Q ss_pred             ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe--E---------EEeecCCCceeEEEecCCCCCEEEEEECCC
Q 009380          279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV--F---------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQG  347 (536)
Q Consensus       279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~--~---------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg  347 (536)
                      ..|.+.|+.+.+.|+.+..+++.+..+.|.|||..+..  .         ..+.+|...-.+++|++...-.|++++.|+
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~  200 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH  200 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence            46899999999999998999999999999999986521  1         256678877888999999888999999999


Q ss_pred             eEEEEECCCCcc-------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380          348 GLNIWDVRSRKS-------ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA  420 (536)
Q Consensus       348 ~i~i~d~~~~~~-------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l  420 (536)
                      +|++||+.....       ...+.+|...|..++|++....+|++++.|+.+.|||+|++  .........+|.+.|+|+
T Consensus       201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEE
Confidence            999999985422       45567999999999999998899999999999999999973  233555666899999999


Q ss_pred             EEcc-CCCeEEEEeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCcccc--
Q 009380          421 YFSP-SGSSLATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRS--  495 (536)
Q Consensus       421 ~~sp-~g~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~--  495 (536)
                      +|+| ++..|||||.|++|.+||+++... +..+...     .-.++++.|+|.. ..|++++.|+.+.|||+..-..  
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-----~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq  353 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-----EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ  353 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-----CcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence            9999 778899999999999999998754 3333221     2245668999974 5688999999999999854211  


Q ss_pred             -----------ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          496 -----------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       496 -----------~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                                 +..+.++|...+ ..++|+|++...|++.++|+.+.||+.
T Consensus       354 ~~eda~dgppEllF~HgGH~~kV-~DfsWnp~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  354 SPEDAEDGPPELLFIHGGHTAKV-SDFSWNPNEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             ChhhhccCCcceeEEecCccccc-ccccCCCCCCeEEEEecCCceEEEeec
Confidence                       123344455554 689999999889999999999999985

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.2e-26  Score=235.51  Aligned_cols=230  Identities=17%  Similarity=0.199  Sum_probs=179.7

Q ss_pred             cccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----CCceEEeccCCCC
Q 009380          210 KIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----DNGIYLFRTHLGP  284 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~~~~~~~~~h~~~  284 (536)
                      .++..+.+.||++... +...+.+|.+.|.+++|+|. ++.+|++|+.||+|+||++.+....    ...+..+.+|...
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~  127 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK  127 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence            3566788999987433 33446789999999999993 2789999999999999999753210    1244567899999


Q ss_pred             EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe
Q 009380          285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL  364 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~  364 (536)
                      |.+++|+|++..+|++++.|++|++||++++.....+.+...|.+++|++++ .+|++++.|+.|++||+++++.+.++.
T Consensus       128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~  206 (568)
T PTZ00420        128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFH  206 (568)
T ss_pred             EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC-CEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            9999999998445689999999999999998766656677889999999998 799999999999999999999999999


Q ss_pred             ccCCCeEEEE-----EecCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCcceeecc---cCceeEEEEccCCCeEEEE
Q 009380          365 LHEARINTID-----FNPRNPNIMATSSTDG----TACIWDLRSMATDKPEPMKVLSH---KRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       365 ~h~~~i~~i~-----~~p~~~~~l~s~s~dg----~i~iwdl~~~~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l~t~  432 (536)
                      +|.+.+.+..     |++++ .+|++++.|+    .|+|||++...    .++....+   .+.+......++|.++++|
T Consensus       207 gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~----~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        207 IHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTT----SALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             cccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCC----CceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            9988754433     34666 5777777664    79999999743    33333333   3333344445568899999


Q ss_pred             eCCCcEEEEeCCCC
Q 009380          433 SFDDTIGIWSGVNF  446 (536)
Q Consensus       433 s~dg~I~iwd~~~~  446 (536)
                      +.|++|++|++..+
T Consensus       282 kGD~tIr~~e~~~~  295 (568)
T PTZ00420        282 KGDGNCRYYQHSLG  295 (568)
T ss_pred             ECCCeEEEEEccCC
Confidence            99999999999765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=1.7e-25  Score=212.31  Aligned_cols=341  Identities=12%  Similarity=0.116  Sum_probs=258.3

Q ss_pred             cccccceecccccceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccE
Q 009380          172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRM  250 (536)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~  250 (536)
                      +...+..+.||.+.|.|+.++|+--.++........  .....-.+++||. .+....++-.....|+|++|++...|.+
T Consensus        93 ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~--g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~  170 (626)
T KOG2106|consen   93 EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTS--GRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSL  170 (626)
T ss_pred             hhhhcccccCCCCceEEEeecCCceeeccCcccccC--CCcCCCeeeecccccceeeeeeccccccceeeeecccCCCce
Confidence            345677889999999999999998888844222111  1122247899994 4444555556688999999999877888


Q ss_pred             EEEEe--CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-----C
Q 009380          251 VVAGS--KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-----S  323 (536)
Q Consensus       251 l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~  323 (536)
                      |+.-+  .+..+.+||...    .......+.....|....|+|.+++++++++ .|.+.+|+++++.+....+     .
T Consensus       171 l~~vD~s~~h~lSVWdWqk----~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~e  245 (626)
T KOG2106|consen  171 LCAVDDSNPHMLSVWDWQK----KAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKRE  245 (626)
T ss_pred             EEEecCCCccccchhhchh----hhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeecccccc
Confidence            87764  345688999987    4445555666778999999999978888887 6789999999876544331     2


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-  402 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-  402 (536)
                      ..-|.|++|.+++  -+++|..+|.|.||+..+.+..+....|.+.|.+++...+|  .|++|+.|+.|..||-.-.+. 
T Consensus       246 kk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r  321 (626)
T KOG2106|consen  246 KKFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLR  321 (626)
T ss_pred             ceEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccc
Confidence            3689999999998  58999999999999998888877777999999999999877  577799999999998321110 


Q ss_pred             -----------------------------------CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          403 -----------------------------------DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       403 -----------------------------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                                                         .....+...+|....+.++.+|+...++|++.|+.+++|+  ..+
T Consensus       322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k  399 (626)
T KOG2106|consen  322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK  399 (626)
T ss_pred             cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc
Confidence                                               0111223456888899999999999999999999999999  344


Q ss_pred             cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380          448 NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG  527 (536)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D  527 (536)
                      .........    ..  -++.|+|.| .+++|+..|...|.|.++.. +-++... ...+ ..+.++| +|.+||.|+.|
T Consensus       400 ~~wt~~~~d----~~--~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~-lv~~~~d-~~~l-s~v~ysp-~G~~lAvgs~d  468 (626)
T KOG2106|consen  400 LEWTKIIED----PA--ECADFHPSG-VVAVGTATGRWFVLDTETQD-LVTIHTD-NEQL-SVVRYSP-DGAFLAVGSHD  468 (626)
T ss_pred             eeEEEEecC----ce--eEeeccCcc-eEEEeeccceEEEEecccce-eEEEEec-CCce-EEEEEcC-CCCEEEEecCC
Confidence            443332222    12  237799999 99999999999999999954 4444443 3333 4688999 78999999999


Q ss_pred             CeEEEEecC
Q 009380          528 GQVYVWTSD  536 (536)
Q Consensus       528 g~v~iW~~d  536 (536)
                      +.|+||.++
T Consensus       469 ~~iyiy~Vs  477 (626)
T KOG2106|consen  469 NHIYIYRVS  477 (626)
T ss_pred             CeEEEEEEC
Confidence            999999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.4e-26  Score=216.05  Aligned_cols=282  Identities=12%  Similarity=0.188  Sum_probs=219.2

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc------------------Cccccc-cccCCc
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL------------------KPENIA-RIMPGR  236 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~------------------~~~~~~-~~~~~~  236 (536)
                      ...+..|.-.+.+|.++++.+.....          +.+|.|.=|+...                  .+.... +.|...
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsa----------sk~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke  204 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSA----------SKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE  204 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeec----------CCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce
Confidence            45677899999999999999877743          4444555454311                  112222 378889


Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      |.+++.+|  ||+||++|+.|..|.||+.++    ...+..+.+|.+.|.+++|-... +.|++++.|.+|++|+++...
T Consensus       205 il~~avS~--Dgkylatgg~d~~v~Iw~~~t----~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s  277 (479)
T KOG0299|consen  205 ILTLAVSS--DGKYLATGGRDRHVQIWDCDT----LEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLS  277 (479)
T ss_pred             eEEEEEcC--CCcEEEecCCCceEEEecCcc----cchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhH
Confidence            99999999  999999999999999999998    77888899999999999998765 899999999999999998754


Q ss_pred             -EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          317 -FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       317 -~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                       ...+++|...|.+|...... ..+.+|+.|+++++|++. ......+.+|.+.+-|++|..+  ..|++|+.+|.|.+|
T Consensus       278 ~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLW  353 (479)
T KOG0299|consen  278 YVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALW  353 (479)
T ss_pred             HHHHHhCCccceeeechhccc-ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc--cceeeccCCceEEEe
Confidence             45678999999999998877 788888899999999993 3334566789999999999964  479999999999999


Q ss_pred             eCCCCCCCCCC-----cc---eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380          396 DLRSMATDKPE-----PM---KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       396 dl~~~~~~~~~-----~~---~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                      ++-+.+.....     +.   ....+...|++++..|...++++|+.+|.|++|-+.++-....+-.......++..  +
T Consensus       354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNs--l  431 (479)
T KOG0299|consen  354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNS--L  431 (479)
T ss_pred             eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEE--E
Confidence            99875421100     00   00122348999999999999999999999999998876332222222234445555  6


Q ss_pred             EEcCCCCEEEEEc
Q 009380          468 IWGWDDSCVFIGN  480 (536)
Q Consensus       468 ~~s~~g~~l~~gs  480 (536)
                      +|+++|+.|++|-
T Consensus       432 ~f~~sgk~ivagi  444 (479)
T KOG0299|consen  432 AFSNSGKRIVAGI  444 (479)
T ss_pred             EEccCCCEEEEec
Confidence            6899999777763

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.95  E-value=1.9e-26  Score=226.61  Aligned_cols=281  Identities=16%  Similarity=0.213  Sum_probs=228.6

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---cccccccCCceEE-EEEEecCCcc
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQ-MKFLPCSDVR  249 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~-v~~~p~~~~~  249 (536)
                      .+...+.||.+.|..|.+.....           +..++.||++++|+-..+.   ......|.+-|.+ ++|.+. ++-
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~~-----------i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~-~~~   72 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGVC-----------IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAES-DKG   72 (745)
T ss_pred             eeEEEeccCccchheeEecCCeE-----------EeecCCCCceeeeeccCcccccceecccCcceeeccceeccc-cCc
Confidence            45567899999998887655553           3356788999999863332   2345667777877 888873 667


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeE
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFS  329 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~  329 (536)
                      .|++|+.|++|.+|.+..    ..++..+.+|...|+|+....++ . ++|||.|.++++|-...-... ..+|...|++
T Consensus        73 ~l~~g~~D~~i~v~~~~~----~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWA  145 (745)
T KOG0301|consen   73 RLVVGGMDTTIIVFKLSQ----AEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGELVYS-LQGHTASVWA  145 (745)
T ss_pred             ceEeecccceEEEEecCC----CCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhhhcc-cCCcchheee
Confidence            799999999999999998    78999999999999999988876 4 999999999999987654333 6789999999


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~  409 (536)
                      +...|.+  .+++|+.|.+|++|.-  ++.+++|.+|.+.|+.+++.+++  .|++|+.||.|++|++..     ..+..
T Consensus       146 v~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~g-----e~l~~  214 (745)
T KOG0301|consen  146 VASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLDG-----EVLLE  214 (745)
T ss_pred             eeecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC--CeEeecCCceEEEEeccC-----ceeee
Confidence            9999986  8999999999999974  78899999999999999999965  589999999999999943     36778


Q ss_pred             eecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380          410 VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       410 ~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d  489 (536)
                      ..+|..-|.+++..+++..|++++.|++++||+..  ++...+.+...   .++.  +.+-++| -|++|+.||.|+||.
T Consensus       215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt---siWs--a~~L~Ng-DIvvg~SDG~VrVfT  286 (745)
T KOG0301|consen  215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT---SIWS--AKVLLNG-DIVVGGSDGRVRVFT  286 (745)
T ss_pred             eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc---ceEE--EEEeeCC-CEEEeccCceEEEEE
Confidence            88999999999988888899999999999999876  66666655331   1222  3333445 478888899999998


Q ss_pred             CCc
Q 009380          490 PAQ  492 (536)
Q Consensus       490 ~~~  492 (536)
                      ...
T Consensus       287 ~~k  289 (745)
T KOG0301|consen  287 VDK  289 (745)
T ss_pred             ecc
Confidence            763

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.9e-26  Score=225.02  Aligned_cols=307  Identities=15%  Similarity=0.167  Sum_probs=233.0

Q ss_pred             ccccccceEEecccccCcc-------ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC
Q 009380          209 EKIEVGSCVDIGSLTLKPE-------NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH  281 (536)
Q Consensus       209 ~~~~~dg~v~lw~~~~~~~-------~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h  281 (536)
                      ++++.||.|++|+......       ...+.|.+.|+.++...  +++.|++++.|-+|++|+.....  ..+..++..|
T Consensus        41 fTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~--~~~tlIS~SsDtTVK~W~~~~~~--~~c~stir~H  116 (735)
T KOG0308|consen   41 FTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG--NGKTLISASSDTTVKVWNAHKDN--TFCMSTIRTH  116 (735)
T ss_pred             EecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc--CCCceEEecCCceEEEeecccCc--chhHhhhhcc
Confidence            4789999999999744322       23467999999999998  89999999999999999998742  3678889999


Q ss_pred             CCCEEEEEE-ecCCCCEEEEEECCCeEEEEECCCCeE------------EEeecCCCceeEEEecCCCCCEEEEEECCCe
Q 009380          282 LGPISGIVT-QQYCLSKIFTSCYDGLIRLMDAEKEVF------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG  348 (536)
Q Consensus       282 ~~~V~~l~~-~~~~~~~l~s~s~dg~I~vwd~~~~~~------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~  348 (536)
                      ...|.|+++ -++. .++++|+.|+.|.+||++++..            ....++...|++++.++.+ ..|++|+..+.
T Consensus       117 ~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~  194 (735)
T KOG0308|consen  117 KDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKD  194 (735)
T ss_pred             cchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccc
Confidence            999999999 6665 8999999999999999997622            1112567899999999998 89999999999


Q ss_pred             EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380          349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS  428 (536)
Q Consensus       349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~  428 (536)
                      |++||.++.+.+..+.+|...|.++-.++|| ..++++|.||+|++||+..-    ..+..+..|...|+++..+|+-.+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCcce
Confidence            9999999999999999999999999999988 68999999999999999873    244456689999999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc-------c------
Q 009380          429 LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR-------S------  495 (536)
Q Consensus       429 l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~-------~------  495 (536)
                      +++|+.||.|..=|+++......+......   +..  ...+...+-+.+++.|+.|+-|...-.-       .      
T Consensus       270 vYsG~rd~~i~~Tdl~n~~~~tlick~daP---v~~--l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~  344 (735)
T KOG0308|consen  270 VYSGGRDGNIYRTDLRNPAKSTLICKEDAP---VLK--LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTD  344 (735)
T ss_pred             EEecCCCCcEEecccCCchhheEeecCCCc---hhh--hhhccccCCceeeeccccceecCCccccccccCCCCCccccc
Confidence            999999999999999986443333211110   111  1112222233566667777777543211       0      


Q ss_pred             ------------ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          496 ------------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       496 ------------~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                                  -..++|.+. ...+.+  - ++.++++|-...|.+.+||+
T Consensus       345 ~~~~~~~~~~tp~~vi~Gg~a-i~k~~m--L-~dkRhVlTkDa~gnv~lwDI  392 (735)
T KOG0308|consen  345 SNNHSCDLTNTPDSVIPGGAA-IKKHAM--L-NDKRHVLTKDAKGNVALWDI  392 (735)
T ss_pred             CCCccccccCCCceeccCchh-hhhhhh--h-cCcceEeeecCCCCEEEEEe
Confidence                        001111100 000111  1 14579999999999999996

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=5.4e-26  Score=234.64  Aligned_cols=296  Identities=15%  Similarity=0.163  Sum_probs=231.7

Q ss_pred             eecccc-cceeeeecCCCCcccccccccccccccccccceEEeccccc--------C---cc--ccccccCCceEEEEEE
Q 009380          178 VIKDEF-NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL--------K---PE--NIARIMPGRITQMKFL  243 (536)
Q Consensus       178 ~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~--------~---~~--~~~~~~~~~I~~v~~~  243 (536)
                      .+.+|. ..|-.+..+|||..++++        ...+||.+.+|+...        .   +.  -....|.+.|+|+.|+
T Consensus         7 ~wv~H~~~~IfSIdv~pdg~~~aTg--------Gq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen    7 TWVNHNEKSIFSIDVHPDGVKFATG--------GQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS   78 (942)
T ss_pred             cccccCCeeEEEEEecCCceeEecC--------CccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC
Confidence            344554 346788999999999955        223888888997621        0   11  1224579999999999


Q ss_pred             ecCCccEEEEEeCCCcEEEEECCCC--------------CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          244 PCSDVRMVVAGSKLGNITFWNLDSQ--------------QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       244 p~~~~~~l~tg~~dg~v~iwd~~~~--------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      |  ||.+||+|+.|+.|.||.....              .+....+..+.+|...|..++|+|++ .+|++++.|++|.+
T Consensus        79 ~--dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsVii  155 (942)
T KOG0973|consen   79 P--DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVII  155 (942)
T ss_pred             C--CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEE
Confidence            9  9999999999999999998730              01234778899999999999999998 99999999999999


Q ss_pred             EECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc------CCCeEEEEEecCCCCE
Q 009380          310 MDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH------EARINTIDFNPRNPNI  382 (536)
Q Consensus       310 wd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~i~~~p~~~~~  382 (536)
                      |+..+.... .+.+|.+.|-.+.|.|-| .+|++-+.|++|++|++.+....+.+..+      ...+..+.|+||| ++
T Consensus       156 wn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~  233 (942)
T KOG0973|consen  156 WNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG-HH  233 (942)
T ss_pred             EccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc-Ce
Confidence            999987544 556899999999999999 89999999999999998776565555433      2357889999998 67


Q ss_pred             EEEEeC----CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-----CC------------eEEEEeCCCcEEEE
Q 009380          383 MATSST----DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-----GS------------SLATTSFDDTIGIW  441 (536)
Q Consensus       383 l~s~s~----dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----g~------------~l~t~s~dg~I~iw  441 (536)
                      |++...    -.++.|.+-.+.+    .-..+.+|..++.++.|+|.     .+            .+|+|+.|++|.||
T Consensus       234 las~nA~n~~~~~~~IieR~tWk----~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW  309 (942)
T KOG0973|consen  234 LASPNAVNGGKSTIAIIERGTWK----VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW  309 (942)
T ss_pred             ecchhhccCCcceeEEEecCCce----eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence            777542    2457777765532    45567799999999999982     11            67889999999999


Q ss_pred             eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      .....+++..+.+-  .+  ..++.++|+|||..|+++|.||+|.++.+...+
T Consensus       310 ~T~~~RPl~vi~~l--f~--~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  310 NTALPRPLFVIHNL--FN--KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             ecCCCCchhhhhhh--hc--CceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            99777777666332  22  245568899999999999999999999987653

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=6.1e-27  Score=203.59  Aligned_cols=247  Identities=15%  Similarity=0.147  Sum_probs=211.4

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      ++.||...|+.+....+.-.-+.          +..|=+.++||.........-.|..-|.+++|+.  |.++|++|+.+
T Consensus        54 tfeghkgavw~~~l~~na~~aas----------aaadftakvw~a~tgdelhsf~hkhivk~~af~~--ds~~lltgg~e  121 (334)
T KOG0278|consen   54 TFEGHKGAVWSATLNKNATRAAS----------AAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQ--DSNYLLTGGQE  121 (334)
T ss_pred             eeeccCcceeeeecCchhhhhhh----------hcccchhhhhhhhhhhhhhhhhhhheeeeEEecc--cchhhhccchH
Confidence            57899999999988887766553          3455577889975555555567888899999999  99999999999


Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV  337 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~  337 (536)
                      ..++|||++..   ..+...+.+|.+.|..+.|.... +.|+++++|++||+||.+++..........+|+++.++++| 
T Consensus       122 kllrvfdln~p---~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG-  196 (334)
T KOG0278|consen  122 KLLRVFDLNRP---KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG-  196 (334)
T ss_pred             HHhhhhhccCC---CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC-
Confidence            99999999875   46677899999999999999887 89999999999999999999999999999999999999998 


Q ss_pred             CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce-eecccCc
Q 009380          338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK-VLSHKRA  416 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~-~~~~~~~  416 (536)
                      .+ ++-...+.|.+||..+...+..+. -...|.+..++|.. .++++|+.|..++.||..++.    .+-. ..+|.++
T Consensus       197 ~i-lTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge----Ei~~~nkgh~gp  269 (334)
T KOG0278|consen  197 RI-LTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE----EIGSYNKGHFGP  269 (334)
T ss_pred             CE-EEEecCceeEEeccccccceeecc-CccccccccccCCC-ceEEecCcceEEEEEeccCCc----eeeecccCCCCc
Confidence            44 455556799999999988888776 45778999999976 799999999999999999975    3333 4689999


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      |.|+.|+|+|...++|+.||+|+||-+..++.
T Consensus       270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  270 VHCVRFSPDGELYASGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             eEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence            99999999999999999999999998765443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.6e-25  Score=201.18  Aligned_cols=293  Identities=13%  Similarity=0.124  Sum_probs=220.1

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..+++|.+.|++++|+.  ||++|++++.|+.|+||++.+-... ..+++.- -.-+.-+.+.|.||....++++-...+
T Consensus        80 ~~LKgH~~~vt~~~FsS--dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSS--DGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcC--CCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCE
Confidence            45799999999999999  9999999999999999999863211 1111111 112356789999998777888888889


Q ss_pred             EEEEECCCC---eEE----------EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE
Q 009380          307 IRLMDAEKE---VFD----------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI  373 (536)
Q Consensus       307 I~vwd~~~~---~~~----------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i  373 (536)
                      +++|.+.+.   ...          .-..|.-.+..+-...++ .+|++++.|..|.+||++ |+.+..+......-+..
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            999987542   111          111345566666666555 899999999999999998 88888888777777888


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEeCCCCCCC----CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC----
Q 009380          374 DFNPRNPNIMATSSTDGTACIWDLRSMATD----KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN----  445 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~----~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~----  445 (536)
                      +.+|+| .++++++.--.|++|.+--.+..    ....+.+.+|...|..++|+++...++|.+.||+++|||..-    
T Consensus       235 avSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  235 AVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            999988 79999998889999997543321    134566779999999999999999999999999999999752    


Q ss_pred             CC---cceEEe--ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380          446 FE---NTSMIH--HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT  520 (536)
Q Consensus       446 ~~---~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~  520 (536)
                      ++   .+....  .....+   ..+++..+|+|+.|+++. ...+.+|..++++...+++..|...+ ..++|.| +|.+
T Consensus       314 ~qDpk~Lk~g~~pl~aag~---~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~I-s~is~~~-~g~~  387 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGS---EPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTI-SSISYSS-DGKY  387 (420)
T ss_pred             CCCchHhhcCCcchhhcCC---CceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCce-eeEEecC-CCcE
Confidence            11   122211  111111   223577899999888775 45799999999998888887777777 5689998 6799


Q ss_pred             EEEEccCCeEEEE
Q 009380          521 LAGATGGGQVYVW  533 (536)
Q Consensus       521 lasgs~Dg~v~iW  533 (536)
                      ++++++ ..+++.
T Consensus       388 ~atcGd-r~vrv~  399 (420)
T KOG2096|consen  388 IATCGD-RYVRVI  399 (420)
T ss_pred             Eeeecc-eeeeee
Confidence            999884 566654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1e-25  Score=197.91  Aligned_cols=288  Identities=17%  Similarity=0.154  Sum_probs=226.9

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEeccc-ccCccccccccCCceEEEEEEecCCccEEEEEeC
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL-TLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK  256 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~-~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~  256 (536)
                      .+.||+..+..+++..+|.+|.++          ..|....+|-. +.+..-...+|.+.|+|+....  +.+.+++|+.
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFsc----------aKD~~~~vw~s~nGerlGty~GHtGavW~~Did~--~s~~liTGSA   72 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSC----------AKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW--DSKHLITGSA   72 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEe----------cCCCCceEEEecCCceeeeecCCCceEEEEEecC--Ccceeeeccc
Confidence            468999999999999999999965          66778888875 3344455789999999999998  8899999999


Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-----CCeEEEEECCC-------Ce-EEEeecC
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-----DGLIRLMDAEK-------EV-FDLVYSS  323 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-----dg~I~vwd~~~-------~~-~~~~~~~  323 (536)
                      |.++++||+.+    ++++..++. ..+|..+.|++++ ++++.+..     .+.|.++|++.       .. ...+..+
T Consensus        73 D~t~kLWDv~t----Gk~la~~k~-~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~  146 (327)
T KOG0643|consen   73 DQTAKLWDVET----GKQLATWKT-NSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP  146 (327)
T ss_pred             cceeEEEEcCC----CcEEEEeec-CCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence            99999999998    778887764 5789999999998 77776643     47899999983       23 4556667


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                      +..++.+-|.|-+ .+|++|..||.|.+||.++++. +..-..|...|+.|+++|+. .+|+++|.|.+-++||+++.  
T Consensus       147 ~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl--  222 (327)
T KOG0643|consen  147 DSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTL--  222 (327)
T ss_pred             ccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeeccce--
Confidence            8999999999998 8999999999999999999855 55557899999999999987 79999999999999999985  


Q ss_pred             CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEE--EeCCCCCcceEEec---------cCCCCceeeeeEEEEcC
Q 009380          403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI--WSGVNFENTSMIHH---------NNQTGRWISSFRAIWGW  471 (536)
Q Consensus       403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~i--wd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~s~  471 (536)
                         .++..+....+|++.+++|....++.|+.-...-|  =+.+.++-...+.|         ...+-.++..  ++|+|
T Consensus       223 ---~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINs--vAfhP  297 (327)
T KOG0643|consen  223 ---EVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINS--VAFHP  297 (327)
T ss_pred             ---eeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcce--eEECC
Confidence               56777788899999999997776776654322222  22222221111111         0111112333  78999


Q ss_pred             CCCEEEEEcCCCcEEEEcCCc
Q 009380          472 DDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      +|+..++|+.||.|++.....
T Consensus       298 dGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  298 DGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             CCcccccCCCCceEEEEEecc
Confidence            999999999999999986544

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.2e-26  Score=199.65  Aligned_cols=255  Identities=16%  Similarity=0.235  Sum_probs=202.1

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec--CCCCEEEEEECCC
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ--YCLSKIFTSCYDG  305 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~~l~s~s~dg  305 (536)
                      .+...|.+.|.++...-  .|+.|||++.|++|+|+.+..... ...+..+.+|.++|+.++|..  .| .+|++|++||
T Consensus         5 ~idt~H~D~IHda~lDy--ygkrlATcsSD~tVkIf~v~~n~~-s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDg   80 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDY--YGKRLATCSSDGTVKIFEVRNNGQ-SKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDG   80 (299)
T ss_pred             ehhhhhhhhhhHhhhhh--hcceeeeecCCccEEEEEEcCCCC-ceeeeEecCCCCCeeEEeecccccC-cEeeEeecCc
Confidence            34567888888888777  889999999999999999987532 367889999999999999965  45 9999999999


Q ss_pred             eEEEEECCCCeEEEee---cCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCC-c--cceeEeccCCCeEEEEEecC
Q 009380          306 LIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSR-K--SATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~-~--~~~~~~~h~~~i~~i~~~p~  378 (536)
                      .|.||.-+++.....+   .|...|++++|.|.+. -+|++++.||.|.|++.+.. .  .......|.-.|++++|.|.
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa  160 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPA  160 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCc
Confidence            9999999998665444   5788999999998753 46788999999999998864 2  13345589999999999985


Q ss_pred             ---C----------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC----CeEEEEeCCCcEEEE
Q 009380          379 ---N----------PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG----SSLATTSFDDTIGIW  441 (536)
Q Consensus       379 ---~----------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g----~~l~t~s~dg~I~iw  441 (536)
                         |          .+.|++|+.|..|+||+...+.  -..-..+.+|...|..++|.|.-    .+|++++.||++.||
T Consensus       161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw  238 (299)
T KOG1332|consen  161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW  238 (299)
T ss_pred             CCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence               2          1469999999999999998853  11223366899999999999943    589999999999999


Q ss_pred             eCCCCCcce--EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          442 SGVNFENTS--MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       442 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      ..+......  ++.+.  ..  -...++.||..|++|++++.|+.|.+|.-..
T Consensus       239 t~~~e~e~wk~tll~~--f~--~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  239 TKDEEYEPWKKTLLEE--FP--DVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             EecCccCccccccccc--CC--cceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            876321111  12121  11  2345588999999999999999999997543

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=3.3e-26  Score=216.70  Aligned_cols=282  Identities=13%  Similarity=0.206  Sum_probs=227.0

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      .|.+-|.++.++.  ..+.+.||++ |.|+|||+..... ...+..+.  .....|.++...|++ +.|++|++-.++.|
T Consensus       417 ~HGEvVcAvtIS~--~trhVyTgGk-gcVKVWdis~pg~-k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsi  491 (705)
T KOG0639|consen  417 AHGEVVCAVTISN--PTRHVYTGGK-GCVKVWDISQPGN-KSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSI  491 (705)
T ss_pred             ccCcEEEEEEecC--CcceeEecCC-CeEEEeeccCCCC-CCccccccccCcccceeeeEecCCC-ceEEeccccceeee
Confidence            3566788888888  7889999986 7999999986432 23333332  235679999999999 99999999999999


Q ss_pred             EECCCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          310 MDAEKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       310 wd~~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ||+.......-.   ...-.+.+++.+||. ++.++++.||.|.|||+.+...++.|++|.+.+.||.++++| ..|.||
T Consensus       492 WDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG-tklWTG  569 (705)
T KOG0639|consen  492 WDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG-TKLWTG  569 (705)
T ss_pred             eeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-ceeecC
Confidence            999876443222   223467889999998 899999999999999999999999999999999999999988 689999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      +.|.+|+.||+|.+.     .+........|.++.++|++.++++|-.++.+.|......+....-.|    ..  .++.
T Consensus       570 GlDntvRcWDlregr-----qlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh----eS--cVLS  638 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGR-----QLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH----ES--CVLS  638 (705)
T ss_pred             CCccceeehhhhhhh-----hhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc----cc--EEEE
Confidence            999999999999863     233345678899999999999999999999999987755443332222    22  3445


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +.|.+.|+++++.+.|+.+..|...-|..+.+.+. ...+.+|.+++   +..+|+||+.|.+..||.+
T Consensus       639 lKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~---ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  639 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISF---DDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             EEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeecc---CceEEEecCCCcceEEEEE
Confidence            77999999999999999999999998877776653 45566677776   4589999999999999876

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1e-25  Score=202.14  Aligned_cols=279  Identities=16%  Similarity=0.202  Sum_probs=215.9

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      -.|+.|++  -|.+||+|..||.|.|||+.+    ......+.+|..+|++++|+++| .+|+|+|.|..|.+||+..|.
T Consensus        26 a~~~~Fs~--~G~~lAvGc~nG~vvI~D~~T----~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSR--WGDYLAVGCANGRVVIYDFDT----FRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEecc--CcceeeeeccCCcEEEEEccc----cchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCC
Confidence            78999999  999999999999999999998    67778899999999999999999 999999999999999999999


Q ss_pred             EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cC----CCeEEEEEecCCCCEEEEEeCCC
Q 009380          317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HE----ARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~----~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      +...+....+|+.+.|+|...+.+++.-.+..-.+.++..+..  .+-.  ..    ..-.+..|.+.| +++++|...|
T Consensus        99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~~Lp~d~d~dln~sas~~~fdr~g-~yIitGtsKG  175 (405)
T KOG1273|consen   99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--SVLPKDDDGDLNSSASHGVFDRRG-KYIITGTSKG  175 (405)
T ss_pred             ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce--eeccCCCccccccccccccccCCC-CEEEEecCcc
Confidence            8888889999999999998877777776665566666554322  2110  11    112234577866 7999999999


Q ss_pred             cEEEEeCCCCCCCCCCcceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC-------c--ceEEeccCCCCc
Q 009380          391 TACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-------N--TSMIHHNNQTGR  460 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~-------~--~~~~~~~~~~~~  460 (536)
                      .+.++|..+.+    .+..... ....|.++.|+..|..|+.-+.|..|+.|++...-       .  .+.+...-....
T Consensus       176 kllv~~a~t~e----~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  176 KLLVYDAETLE----CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             eEEEEecchhe----eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            99999999864    2222222 24688999999999999999999999999986321       1  111110001111


Q ss_pred             eeeeeEEEEcCCCCEEEEEcCC-CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          461 WISSFRAIWGWDDSCVFIGNMT-RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       461 ~~~~~~~~~s~~g~~l~~gs~d-g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      |-   +++|+.+|.|+++|+.. ..++||....|.++..|.+..+... ..+.|||.. ..+++- ..|.|+||..
T Consensus       252 Wk---~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l-~DV~whp~r-p~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  252 WK---KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEEL-LDVNWHPVR-PIIASI-ASGVVYIWAV  321 (405)
T ss_pred             hh---heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhhe-eecccccce-eeeeec-cCCceEEEEe
Confidence            21   37799999999888754 6799999999999999988665544 578999965 556655 7899999975

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=228.56  Aligned_cols=287  Identities=19%  Similarity=0.246  Sum_probs=220.2

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC---CCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL---GPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ...+..|...+  +-..|+.++. ..+.||.+........+...+....   -.+..+.|+.-..++|+|++..|.|.+|
T Consensus        39 k~~~nAIs~nr--~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   39 KAKANAISVNR--DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             ccccceEeecC--CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            34567777778  7777777775 4788888876443333433332221   2356778886556899999999999999


Q ss_pred             ECCC---CeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          311 DAEK---EVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       311 d~~~---~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      |+..   .+.. .+..|...+.+++|++..+++|++|+.||+|++||++..+...++.+....|..|.|+|..++.|+++
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence            9987   3333 33468999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      ...|.+.+||+|...   .....+..|.++|.++.|+|++.+|||||.|+.|+|||+.+.+.......  .+...+.  +
T Consensus       196 ~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~--r  268 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVG--R  268 (839)
T ss_pred             cCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE--eecceee--e
Confidence            999999999999864   34455668999999999999999999999999999999986543332211  2233333  3


Q ss_pred             EEEcCCCCE-EEEEcC--CCcEEEEcCCccccc-eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          467 AIWGWDDSC-VFIGNM--TRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       467 ~~~s~~g~~-l~~gs~--dg~I~v~d~~~~~~~-~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                      +.|-|...+ |+++++  |-.|+|||+...-+- .++.. |...+ ..++|...+...|.+++.||.|..
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e-H~~~v-t~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE-HTDSV-TGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccccccceeeec-cCccc-cceeccCCCceeeEeecCccHHHH
Confidence            779998766 666654  567999999876544 44444 44444 457776666678999999998753

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.5e-25  Score=220.30  Aligned_cols=285  Identities=15%  Similarity=0.180  Sum_probs=225.0

Q ss_pred             EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC----------CCEEEEEECCCeE
Q 009380          238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC----------LSKIFTSCYDGLI  307 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~----------~~~l~s~s~dg~I  307 (536)
                      .++.|.|  ....|.+...|..++|||+.+... ......+.-|+..|+.+.-.|.+          +..|+||+.|++|
T Consensus       328 IA~~Fde--t~~klscVYndhSlYvWDvrD~~k-vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI  404 (1080)
T KOG1408|consen  328 IACQFDE--TTDKLSCVYNDHSLYVWDVRDVNK-VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI  404 (1080)
T ss_pred             eEEEecC--CCceEEEEEcCceEEEEecccccc-ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence            4677888  778899999999999999997543 33455666799999988876621          2469999999999


Q ss_pred             EEEECCCCe---E-----------------------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380          308 RLMDAEKEV---F-----------------------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGL  349 (536)
Q Consensus       308 ~vwd~~~~~---~-----------------------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i  349 (536)
                      ++||+..+.   .                                   ...+.....+.+++.+|++ .+|++|..-|+|
T Consensus       405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~Gnl  483 (1080)
T KOG1408|consen  405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNL  483 (1080)
T ss_pred             EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCce
Confidence            999997521   0                                   0011223468999999999 899999999999


Q ss_pred             EEEECCCCccceeEeccCCCeEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc-------------
Q 009380          350 NIWDVRSRKSATEWLLHEARINTIDFNPR--NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK-------------  414 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~--~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~-------------  414 (536)
                      ++||+..-+....+..|...|.|+.|+.-  +..+||+++.|+.|+|||+...-   .....+.+|.             
T Consensus       484 rVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gl  560 (1080)
T KOG1408|consen  484 RVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGL  560 (1080)
T ss_pred             EEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCC
Confidence            99999998888899999999999999842  23589999999999999986531   0111111222             


Q ss_pred             ------------------------------------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380          415 ------------------------------------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       415 ------------------------------------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                                                          ..++.++..|+.+++++++.|..|+|||+.+++....|+.....
T Consensus       561 n~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~  640 (1080)
T KOG1408|consen  561 NRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH  640 (1080)
T ss_pred             ceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC
Confidence                                                34566677777789999999999999999999999998654333


Q ss_pred             -CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          459 -GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       459 -~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                       |..   +++...|.|.||++...|+++.+||..+++++++..+|..-+  +.+.|.+ |...|++.+.||.|.||.+
T Consensus       641 eG~l---IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V--TG~kF~n-DCkHlISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  641 EGDL---IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV--TGVKFLN-DCKHLISVSGDGCIFVWKL  712 (1080)
T ss_pred             CCce---EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe--eeeeecc-cchhheeecCCceEEEEEC
Confidence             433   347789999999999999999999999999999998865443  4678887 5699999999999999986

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=3.3e-26  Score=204.81  Aligned_cols=255  Identities=16%  Similarity=0.246  Sum_probs=198.2

Q ss_pred             CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-------------------CeEEEeecCCCceeEEEec
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-------------------EVFDLVYSSEYAVFSLSQQ  333 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-------------------~~~~~~~~~~~~i~~l~~~  333 (536)
                      .....+..|.+++.+.+|++|| .++++|+.|.+|+|+|++.                   ..+..++.|..+|+++.|+
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH  181 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH  181 (430)
T ss_pred             cceEEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence            4455677899999999999999 9999999999999999872                   1235667899999999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      |.. .+|++|+.|++|++||+......+.++  ....+|.+|.|+|.| .+|+.|....++++||+.+.++-. ......
T Consensus       182 Pre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfv-sanPd~  258 (430)
T KOG0640|consen  182 PRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFV-SANPDD  258 (430)
T ss_pred             chh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEee-ecCccc
Confidence            998 899999999999999997654322222  356789999999977 699999999999999999865321 112334


Q ss_pred             cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      +|...|+++.+++.|++.+|++.||.|+|||--+.+++.++..... +..+..  +.|..+|+||++.++|..|++|.+.
T Consensus       259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-gsevcS--a~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-GSEVCS--AVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC-Cceeee--EEEccCCeEEeecCCcceeeeeeec
Confidence            7999999999999999999999999999999988899888864332 333333  7799999999999999999999999


Q ss_pred             ccccceeccCCcee---eeeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380          492 QRRSVATLQSPYIS---AIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS  535 (536)
Q Consensus       492 ~~~~~~~l~~~~~~---~~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~  535 (536)
                      +++.+..+.+....   .......|+-+. ++++.-. ..+.++-||.
T Consensus       336 t~R~l~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~slcsWda  382 (430)
T KOG0640|consen  336 TGRMLKEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNSLCSWDA  382 (430)
T ss_pred             CCceEEEEecCCcccchhhhhhhhhcCcc-ceEEccccccCceeeccc
Confidence            99999888764211   112223343322 4444432 3455666663

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.2e-24  Score=220.41  Aligned_cols=284  Identities=16%  Similarity=0.229  Sum_probs=223.7

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      ...|.+.-+.|+|.|  +|.+|++++.||.|++|+.....   .....+..|...|.+++...   ++|++|+.+++|.+
T Consensus         9 Ryaht~G~t~i~~d~--~gefi~tcgsdg~ir~~~~~sd~---e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~   80 (933)
T KOG1274|consen    9 RYAHTGGLTLICYDP--DGEFICTCGSDGDIRKWKTNSDE---EEPETIDISGELVSSIACYS---NHFLTGSEQNTVLR   80 (933)
T ss_pred             hhhccCceEEEEEcC--CCCEEEEecCCCceEEeecCCcc---cCCchhhccCceeEEEeecc---cceEEeeccceEEE
Confidence            457888999999999  99999999999999999987642   12222233778888887654   68999999999999


Q ss_pred             EECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          310 MDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       310 wd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      |.+..+... .+.....++.+++|+.+| ++++.|+.|-.|++.++.+......+.+|..+|.++.|+|.+ ++||+.+.
T Consensus        81 y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~-~fLAvss~  158 (933)
T KOG1274|consen   81 YKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG-NFLAVSSC  158 (933)
T ss_pred             eeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC-CEEEEEec
Confidence            999988766 444567899999999998 899999999999999999999999999999999999999977 79999999


Q ss_pred             CCcEEEEeCCCCCCCCCC--ccee--ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          389 DGTACIWDLRSMATDKPE--PMKV--LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~--~~~~--~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                      ||.|+|||+.++......  +...  ......+..++|+|+|..++..+.|+.|++|+..+++....+........ +. 
T Consensus       159 dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~-~~-  236 (933)
T KOG1274|consen  159 DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK-FS-  236 (933)
T ss_pred             CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc-eE-
Confidence            999999999986421100  0011  11245678899999988899999999999999999999888865443332 33 


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                       .+.|+|+|.|||+++.||.|.|||+.+-+.      |......|..+|.|+. +.+-.-..-|...+|
T Consensus       237 -~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~-n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  237 -DLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNA-NAITLITALGTLGVS  297 (933)
T ss_pred             -EEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCC-CeeEEEeeccccccC
Confidence             378999999999999999999999998322      2222334678999954 555544444444433

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=7.4e-25  Score=219.49  Aligned_cols=327  Identities=16%  Similarity=0.234  Sum_probs=249.7

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccC-CceEEEEEEecCCcc-EE
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMP-GRITQMKFLPCSDVR-MV  251 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~-~~I~~v~~~p~~~~~-~l  251 (536)
                      ...+.+.++.+.|.++.-+|-=++++          -+-.+|.|.|+++..+.....-.|. ++|+++.|..  ||. .+
T Consensus       193 K~v~~f~~~~s~IT~ieqsPaLDVVa----------iG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrt--DG~p~l  260 (910)
T KOG1539|consen  193 KVVYTFQEFFSRITAIEQSPALDVVA----------IGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRT--DGNPLL  260 (910)
T ss_pred             cEEEEecccccceeEeccCCcceEEE----------EeccCceEEEEEcccCcEEEEEEccccceeEEEecc--CCCeeE
Confidence            34567788889999999999888888          3568899999999888777666674 9999999998  774 66


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEe-ccCCCCEEEEEEecCCCCEEEEEECCCeEEEE--------------------
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM--------------------  310 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw--------------------  310 (536)
                      ++|+..|.+.+||++..    ..+... ..|.+.|..+.|.|.. ..+++++.|+.+++|                    
T Consensus       261 as~~~~G~m~~wDLe~k----kl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~  335 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKK----KLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA  335 (910)
T ss_pred             EeccCCceEEEEEcCCC----eeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence            77888899999999862    222222 2444444444444443 444444444444444                    


Q ss_pred             ---------------------------ECCCC-------e---------E------------------------------
Q 009380          311 ---------------------------DAEKE-------V---------F------------------------------  317 (536)
Q Consensus       311 ---------------------------d~~~~-------~---------~------------------------------  317 (536)
                                                 ++...       .         .                              
T Consensus       336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence                                       32100       0         0                              


Q ss_pred             --------------------EEeecC------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccCC
Q 009380          318 --------------------DLVYSS------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHEA  368 (536)
Q Consensus       318 --------------------~~~~~~------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~  368 (536)
                                          ...+.+      ...+++++.++-| |+.+.|...|.|-+|++.+|-....+   ..|..
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~  494 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG  494 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence                                001112      2457888899888 89999999999999999999888777   48999


Q ss_pred             CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      +|++++....+ +.+++++.+|.+++||..+.     ...........+.++.++.....++++..|-.|+++|..+.+.
T Consensus       495 ~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k-----~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  495 EVTGLAVDGTN-RLLVSAGADGILKFWDFKKK-----VLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             ceeEEEecCCC-ceEEEccCcceEEEEecCCc-----ceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            99999998876 68999999999999999874     3445556677889999999888999999999999999998887


Q ss_pred             ceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380          449 TSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG  527 (536)
Q Consensus       449 ~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D  527 (536)
                      .+.+. |.+    .++.  ..|||||++|+++++|++|++||+.++.++..+.-   ...+..++++| ++++||+...|
T Consensus       569 vR~f~gh~n----ritd--~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v---d~~~~sls~SP-ngD~LAT~Hvd  638 (910)
T KOG1539|consen  569 VREFWGHGN----RITD--MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSP-NGDFLATVHVD  638 (910)
T ss_pred             hHHhhcccc----ceee--eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec---CCcceeeEECC-CCCEEEEEEec
Confidence            77774 333    3444  67999999999999999999999999988876643   34456899999 57999999988


Q ss_pred             -CeEEEEe
Q 009380          528 -GQVYVWT  534 (536)
Q Consensus       528 -g~v~iW~  534 (536)
                       .-|++|-
T Consensus       639 ~~gIylWs  646 (910)
T KOG1539|consen  639 QNGIYLWS  646 (910)
T ss_pred             CceEEEEE
Confidence             6799994

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.94  E-value=3.3e-25  Score=215.90  Aligned_cols=293  Identities=16%  Similarity=0.186  Sum_probs=215.9

Q ss_pred             EEEEEEecC-CccEEEEEeCCCcEEEEECCCCCCC--CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          238 TQMKFLPCS-DVRMVVAGSKLGNITFWNLDSQQDE--DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       238 ~~v~~~p~~-~~~~l~tg~~dg~v~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      .+..|++.. ...+|+.+..||.|.++|.......  ...+..+..|...|..+.|-| +...|++++.|.++++||+.+
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence            456676542 3467889999999999998763221  233567788999999999999 558999999999999999998


Q ss_pred             CeEE---EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc---------------------------cceeEe
Q 009380          315 EVFD---LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK---------------------------SATEWL  364 (536)
Q Consensus       315 ~~~~---~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~---------------------------~~~~~~  364 (536)
                      ..+.   ..++|...|.++||.+.++..|++|+.||.|.|||++-..                           .+....
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k  211 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK  211 (720)
T ss_pred             ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence            7654   3578999999999999999999999999999999987432                           011222


Q ss_pred             ccCCCeEE---EEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCC----CCcceeecc---cCceeEEEEccCCCeEEEEe
Q 009380          365 LHEARINT---IDFNPRNPNIMATSST-DGTACIWDLRSMATDK----PEPMKVLSH---KRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       365 ~h~~~i~~---i~~~p~~~~~l~s~s~-dg~i~iwdl~~~~~~~----~~~~~~~~~---~~~v~~l~~sp~g~~l~t~s  433 (536)
                      .+...|.+   +.+..|. +.||+++. |+.|+|||+++.....    .....+..|   ...+.++..+..|.+|++.|
T Consensus       212 A~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC  290 (720)
T KOG0321|consen  212 AASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC  290 (720)
T ss_pred             cccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence            34444555   5555555 68888887 9999999999864311    112222233   45678888888899999999


Q ss_pred             CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc-eeccCCceeeeeeeEe
Q 009380          434 FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFH  512 (536)
Q Consensus       434 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~-~~l~~~~~~~~~~~~~  512 (536)
                      .|+.|++|++..........+.......+ ..+-..+|++.+|++|+.|...++|.+.+.+.- ..+.+|...+.  .+.
T Consensus       291 tD~sIy~ynm~s~s~sP~~~~sg~~~~sf-~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt--~V~  367 (720)
T KOG0321|consen  291 TDNSIYFYNMRSLSISPVAEFSGKLNSSF-YVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVT--TVR  367 (720)
T ss_pred             cCCcEEEEeccccCcCchhhccCccccee-eeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEE--EEe
Confidence            99999999998765433332222222111 123456899999999999999999999887653 34445544444  466


Q ss_pred             ecCCCCCEEEEEccCCeEEEEec
Q 009380          513 AHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       513 ~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      |.|..-.-++++++|-.++||++
T Consensus       368 w~pS~~t~v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  368 WLPSATTPVATCSDDFRVKIWRL  390 (720)
T ss_pred             eccccCCCceeeccCcceEEEec
Confidence            76665567888899999999987

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.1e-24  Score=195.58  Aligned_cols=272  Identities=15%  Similarity=0.181  Sum_probs=214.9

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNIT  261 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~  261 (536)
                      ..+.|..+.|++....|..          .+.||.++||+.........-.|..++.+++|.+   ...+++|+.||.|+
T Consensus        12 P~d~IS~v~f~~~~~~LLv----------ssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d---~~~~~~G~~dg~vr   78 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLV----------SSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD---ESTIVTGGLDGQVR   78 (323)
T ss_pred             ChhceeeEEEcCcCCcEEE----------EeccCcEEEEeccchhhhhheecCCceeeeeccC---CceEEEeccCceEE
Confidence            4578889999988877763          3689999999997776666677899999999996   35789999999999


Q ss_pred             EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEE
Q 009380          262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLY  341 (536)
Q Consensus       262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~  341 (536)
                      ++|+.+     .....+..|..+|.||.+++-. +.+++||+|++|++||.+.......+.....|.++....   +.|+
T Consensus        79 ~~Dln~-----~~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g---~~Lv  149 (323)
T KOG1036|consen   79 RYDLNT-----GNEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG---NRLV  149 (323)
T ss_pred             EEEecC-----CcceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEEeccC---CEEE
Confidence            999996     3455677899999999999877 899999999999999999866666666667898888763   6899


Q ss_pred             EEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc-----
Q 009380          342 FGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK-----  414 (536)
Q Consensus       342 ~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~-----  414 (536)
                      +|+.+..|.+||+++.....+..  ...-.+.||++.|.+ .=+++++-||.|.+=.+............+..|.     
T Consensus       150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~-eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~  228 (323)
T KOG1036|consen  150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG-EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKD  228 (323)
T ss_pred             EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC-CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCC
Confidence            99999999999999876533222  345678999999955 4577788899998866655322222333444443     


Q ss_pred             ----CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          415 ----RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       415 ----~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                          .+|++++|+|-...|+||+.||.|.+||+.+.+.+..+...   ...+..  ++|+.+|..||+++.
T Consensus       229 ~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~---~~SI~s--lsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  229 TEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY---ETSISS--LSFSMDGSLLAIASS  294 (323)
T ss_pred             ceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC---CCceEE--EEeccCCCeEEEEec
Confidence                47999999998888999999999999999988877776432   112333  779999999999964

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=5.5e-25  Score=216.28  Aligned_cols=344  Identities=14%  Similarity=0.137  Sum_probs=258.0

Q ss_pred             cccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-------------------------
Q 009380          172 DENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-------------------------  226 (536)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-------------------------  226 (536)
                      .|+...-++||.|+|+.+.|...+..-       +-..+++.|..|+||.+....                         
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~-------~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~  252 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDD-------LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE  252 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCc-------EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence            456667789999999999998877611       111256777788888763322                         


Q ss_pred             -------cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCC---ceEEeccCCCCEEEEEEecCCCC
Q 009380          227 -------ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN---GIYLFRTHLGPISGIVTQQYCLS  296 (536)
Q Consensus       227 -------~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~---~~~~~~~h~~~V~~l~~~~~~~~  296 (536)
                             ..+..+|.+.|+++.|+|  ++..|++++.|.++.+|..++......   .+-...+..+......|+|++ +
T Consensus       253 i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~  329 (764)
T KOG1063|consen  253 IQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-N  329 (764)
T ss_pred             EEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-C
Confidence                   023458999999999999  999999999999999999886421111   122233445568899999998 9


Q ss_pred             EEEEEECCCeEEEEECCCC-e---EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----ceeEeccCC
Q 009380          297 KIFTSCYDGLIRLMDAEKE-V---FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----ATEWLLHEA  368 (536)
Q Consensus       297 ~l~s~s~dg~I~vwd~~~~-~---~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~  368 (536)
                      .+++-++-|..++|..... .   ...+.+|-..|.+++|+|.| .+|++.+.|-+-++|-.-..+.    +..-+-|..
T Consensus       330 ~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy  408 (764)
T KOG1063|consen  330 VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY  408 (764)
T ss_pred             EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccc
Confidence            9999999999999994332 2   22345788999999999999 7999999999999987542211    222346888


Q ss_pred             CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC--------------------------------C---------------
Q 009380          369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSM--------------------------------A---------------  401 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~--------------------------------~---------------  401 (536)
                      .++|++|-+. ...|++|.....+++|+....                                +               
T Consensus       409 Dl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~  487 (764)
T KOG1063|consen  409 DLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAV  487 (764)
T ss_pred             cceeeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccce
Confidence            9999999984 478999999999999986531                                0               


Q ss_pred             -------------------------CCCCCcceeecccCceeEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCcceE
Q 009380          402 -------------------------TDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTSM  451 (536)
Q Consensus       402 -------------------------~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg-----~I~iwd~~~~~~~~~  451 (536)
                                               ...+...++++|...|.+++.+|+|+++++++...     .|++|+..+......
T Consensus       488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~  567 (764)
T KOG1063|consen  488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQE  567 (764)
T ss_pred             eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence                                     00112335678999999999999999999998654     499999988877765


Q ss_pred             EeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc----ceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380          452 IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS----VATLQSPYISAIPCRFHAHPHQVGTLAGATGG  527 (536)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~----~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D  527 (536)
                      +.     ++.+++.++.|||||++|++.+.|+++.+|.......    ...++. |..++ ...+|+| ++.+++|+|.|
T Consensus       568 L~-----~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~-HtRII-WdcsW~p-de~~FaTaSRD  639 (764)
T KOG1063|consen  568 LE-----GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKA-HTRII-WDCSWSP-DEKYFATASRD  639 (764)
T ss_pred             ec-----ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccc-cceEE-EEcccCc-ccceeEEecCC
Confidence            53     2345777799999999999999999999998855422    222333 33333 6778999 56889999999


Q ss_pred             CeEEEEec
Q 009380          528 GQVYVWTS  535 (536)
Q Consensus       528 g~v~iW~~  535 (536)
                      .+|.||..
T Consensus       640 K~VkVW~~  647 (764)
T KOG1063|consen  640 KKVKVWEE  647 (764)
T ss_pred             ceEEEEec
Confidence            99999975

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.1e-24  Score=182.75  Aligned_cols=286  Identities=16%  Similarity=0.212  Sum_probs=215.5

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEec------cc------ccCc-c---ccccccCCceEEEEEEe
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIG------SL------TLKP-E---NIARIMPGRITQMKFLP  244 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw------~~------~~~~-~---~~~~~~~~~I~~v~~~p  244 (536)
                      .+...|.++.|.|.|.+.+...+          ..++++-      ++      ...| .   ...+-|.+.|+|++|+|
T Consensus        30 ~dsqairav~fhp~g~lyavgsn----------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   30 EDSQAIRAVAFHPAGGLYAVGSN----------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             cchhheeeEEecCCCceEEeccC----------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence            35678999999999999985422          2222222      11      1112 1   12256799999999999


Q ss_pred             cCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecC---CCCEEEEEE-CCCeEEEEECCCCe-EE
Q 009380          245 CSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQY---CLSKIFTSC-YDGLIRLMDAEKEV-FD  318 (536)
Q Consensus       245 ~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~---~~~~l~s~s-~dg~I~vwd~~~~~-~~  318 (536)
                        +|.+|++|+.|.+|++........ ....-..|.-|.+.|..++|..+   ++.+|++++ .|..|++-|..+++ +.
T Consensus       100 --~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~  177 (350)
T KOG0641|consen  100 --CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH  177 (350)
T ss_pred             --ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce
Confidence              999999999999999977654221 01233567789999999999754   335677765 36778888887765 45


Q ss_pred             EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--c-----CCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          319 LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--H-----EARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       319 ~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h-----~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      .+.+|.+-|.++--- ++ .++++|+.|.+|++||++-..++.++..  |     ...|.+++..|.| .+|++|-.|..
T Consensus       178 a~sghtghilalysw-n~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dss  254 (350)
T KOG0641|consen  178 ALSGHTGHILALYSW-NG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSS  254 (350)
T ss_pred             eecCCcccEEEEEEe-cC-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCc
Confidence            566788888887432 23 6899999999999999999888877641  2     3579999999987 79999999999


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC---CcceEE--eccCCCCceeeeeE
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF---ENTSMI--HHNNQTGRWISSFR  466 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~---~~~~~~--~~~~~~~~~~~~~~  466 (536)
                      ..+||+|.+.    .+..+..|...|.++.|+|...|+++|++|..|++-|+...   +....+  .|..      ..+.
T Consensus       255 c~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkd------k~i~  324 (350)
T KOG0641|consen  255 CMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKD------KAIQ  324 (350)
T ss_pred             eEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccC------ceEE
Confidence            9999999864    56677799999999999999999999999999999998632   111111  1221      2344


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      +.|+|..-.+++.+.|.++.+|-+.
T Consensus       325 ~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  325 CRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEecCccceeeeccCcceEEEeccC
Confidence            7899998889999999999999764

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=8.5e-25  Score=215.07  Aligned_cols=280  Identities=18%  Similarity=0.192  Sum_probs=221.2

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE-EEEecCCCCEEEEEECCC
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG-IVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~-l~~~~~~~~~l~s~s~dg  305 (536)
                      ...+.+|...|..+++.+   +..+++++.||++++|+-...+  ....+.+.+|.+.|.+ +++.+.....|++|+.|.
T Consensus         7 s~~l~gH~~DVr~v~~~~---~~~i~s~sRd~t~~vw~~~~~~--~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~   81 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTD---GVCIISGSRDGTVKVWAKKGKQ--YLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT   81 (745)
T ss_pred             EEEeccCccchheeEecC---CeEEeecCCCCceeeeeccCcc--cccceecccCcceeeccceeccccCcceEeecccc
Confidence            345688999998888775   4589999999999999986532  4455678888888887 888864325699999999


Q ss_pred             eEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          306 LIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       306 ~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      +|.+|.+.+.... .+.+|...|.+++...++  .+++|++|.++++|-+  +++...+.+|+..|.++...|.+  .++
T Consensus        82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~v  155 (745)
T KOG0301|consen   82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TYV  155 (745)
T ss_pred             eEEEEecCCCCchhhhhccccceeeeecCCcC--ceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cEE
Confidence            9999999887654 556899999999988776  4999999999999964  66777899999999999999965  799


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                      |||.|.+|++|.-.+      ....+.+|..-|..+++-+++. |++++.||.|++|++ +++.+....   .+...+.+
T Consensus       156 TgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYs  224 (745)
T KOG0301|consen  156 TGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYS  224 (745)
T ss_pred             eccCcceeeeccCCc------hhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeee---ccceEEEE
Confidence            999999999998644      5566779999999999998754 889999999999999 555555442   11223333


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                        +....++..+++++.|++++||+..  ++.+.+.-+..+.+  ++.+-+ + .-+++|++||.|+||..+
T Consensus       225 --is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiW--sa~~L~-N-gDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  225 --ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIW--SAKVLL-N-GDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             --EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceE--EEEEee-C-CCEEEeccCceEEEEEec
Confidence              4456677899999999999999987  56666655444444  334433 2 468899999999999753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.9e-24  Score=193.10  Aligned_cols=273  Identities=12%  Similarity=0.095  Sum_probs=212.6

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEEEEeC
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVVAGSK  256 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~tg~~  256 (536)
                      ....|.|.++.|||....+..         .++.||+|++|++.....   .....|.++|.+++|+.  ||..+++|+.
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~---------A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~   92 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLA---------AGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGC   92 (347)
T ss_pred             CCcccchheeEeccccCceEE---------ecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeecc
Confidence            345688999999995554442         258999999999865322   34467899999999999  9999999999


Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~  335 (536)
                      |+.+++||+.+     ..+..+..|.++|.++.|-+... ..|+|||.|++|+.||.+...........+.+.++..-. 
T Consensus        93 Dk~~k~wDL~S-----~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~-  166 (347)
T KOG0647|consen   93 DKQAKLWDLAS-----GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLY-  166 (347)
T ss_pred             CCceEEEEccC-----CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccC-
Confidence            99999999997     36778889999999999988651 379999999999999999988887777788888888754 


Q ss_pred             CCCEEEEEECCCeEEEEECCCCcccee-Ee-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKSATE-WL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH  413 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~  413 (536)
                        .++++++.+..|.+|+++.+..... .. ...-.+.||+..++.. -.+.|+-+|.+.|..+..+..  ..-..+..|
T Consensus       167 --pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~--~~nFtFkCH  241 (347)
T KOG0647|consen  167 --PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNP--KDNFTFKCH  241 (347)
T ss_pred             --ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCc--cCceeEEEe
Confidence              4789999999999999987643221 11 2345689999999874 568999999999999887542  223334444


Q ss_pred             c---------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380          414 K---------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       414 ~---------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                      +         ..|++|+|+|....|+|++.||+..+||-.....+.......   ..+++  +.|+.+|.+++-+
T Consensus       242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~---qpItc--c~fn~~G~ifaYA  311 (347)
T KOG0647|consen  242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP---QPITC--CSFNRNGSIFAYA  311 (347)
T ss_pred             ccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC---Cccce--eEecCCCCEEEEE
Confidence            4         368899999988889999999999999987666655543222   23333  7789898887654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.94  E-value=1.1e-24  Score=204.82  Aligned_cols=415  Identities=13%  Similarity=0.109  Sum_probs=273.5

Q ss_pred             ccCCHHHHHHHHhHHHHHHHHHhcCccccccccccccccCcccccccCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 009380            4 EKLTEYERKRLENIKRNEEMLAALKVHAKASDLSAASKRQRVEIKAYKVSPQKKSKPETPIVLRRSLRTQGMQPDSKGLS   83 (536)
Q Consensus         4 ~~~~~~e~~r~~~i~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrs~r~~~~~~~~~~~~   83 (536)
                      +++..|+|+|..++.++..+..++.+.  |++|.++..+-..  ++--   ..   .=+..|.+-|+|..-..+--    
T Consensus        63 sg~~P~~r~~~kk~s~~~~~~~s~~~~--~~rll~~~~~~~~--~~~~---i~---~l~~K~~~~s~~~~~~~~~~----  128 (498)
T KOG4328|consen   63 SGMAPKKRKRTKKGSEIADFKGSPQSS--AARLLESRSPLPL--EPNF---ID---LLKAKPSGGSLRCDSTCLWK----  128 (498)
T ss_pred             cCCCCcchhhhcccchhhcccCCcccc--hhhhhhhcCCCCc--chhh---hh---hcccCCCccceeecccccee----
Confidence            568899999999999999999999884  7777552110000  0000   00   01123556666665332110    


Q ss_pred             CCcccCCCCCCCCCCCCCCCCCCCCcccccccccCCchhhHHHHHHHhccCCCCCcchhhhccccccccccccccceeee
Q 009380           84 DHSVASDPKTSKSVSPKKSSAMTGPLSFKNAYVETGTFVSLVDVFLSVAKKPHFGEIKEEFNASLDYEMKPKVGVSVSVK  163 (536)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (536)
                                   .+.+.+..+..+..+...++.++    +...|..+.+.-+.   .-+                  |+
T Consensus       129 -------------de~et~ll~~~~s~~~t~~~~~~----~f~~~~~~q~~i~~---~~~------------------~d  170 (498)
T KOG4328|consen  129 -------------DEDETPLLPPCRSIRNTKNQHKD----FFASWPSVQQGIPQ---SIK------------------FD  170 (498)
T ss_pred             -------------ccCCCcccCCccccccccccccc----hhhcchhccCCCCc---ccc------------------cc
Confidence                         01122333344555555554442    22444443321111   000                  11


Q ss_pred             ccCccccccccccceecccccceeeeecCCCCc-ccccccccccccccccccceEEecccccC-----ccccccccCCce
Q 009380          164 EDGVKACKDENLGFVIKDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRI  237 (536)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I  237 (536)
                      -+.    -+....+.++-+...|.++.|.|... .+..         .+...|.|-+||+..+     ...+...|.++|
T Consensus       171 l~l----~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva---------~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~V  237 (498)
T KOG4328|consen  171 LDL----DDYRILNVAKVTDRRITSLAFHPTENRKLVA---------VGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPV  237 (498)
T ss_pred             ccc----ccceecceeEecccceEEEEecccCcceEEE---------EccCCCcEEEEecCCCCCccCceEEeccCCccc
Confidence            110    01233455677888999999999987 3332         4677789999998422     223456789999


Q ss_pred             EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-
Q 009380          238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-  316 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-  316 (536)
                      .++.|+|. +...+++.+.||+|++-|+....  ...+.....-...+..+.|+... ..++.+..=|...+||++++. 
T Consensus       238 s~l~F~P~-n~s~i~ssSyDGtiR~~D~~~~i--~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s  313 (498)
T KOG4328|consen  238 SGLKFSPA-NTSQIYSSSYDGTIRLQDFEGNI--SEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGS  313 (498)
T ss_pred             cceEecCC-ChhheeeeccCceeeeeeecchh--hHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCc
Confidence            99999997 55788889999999999998643  34445554455667888998887 677777777799999998754 


Q ss_pred             -EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----ceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          317 -FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----ATEWLLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       317 -~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                       ...+.-|...|.+++++|..+.+|++++.|++++|||+|.-..    +.....|...|.+..|+|.+.. |+|.+.|..
T Consensus       314 ~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~  392 (498)
T KOG4328|consen  314 EYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNE  392 (498)
T ss_pred             cchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCc
Confidence             3445567789999999999999999999999999999986322    2223369999999999999976 889999999


Q ss_pred             EEEEeCCCCCCCCCCcceeecccC------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKR------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      |+|||..-.... ..+.....|..      ......|.|+..+|++|-.-..|-|||-..++.+..+......  .+.++
T Consensus       393 IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~--tI~~v  469 (498)
T KOG4328|consen  393 IRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS--TIPSV  469 (498)
T ss_pred             eEEeeccccccc-CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc--ccccc
Confidence            999998522111 12333333332      2345789999999999999999999998777766655332221  12221


Q ss_pred             EEEEcCCCCEEEEE-cCCCcEEEEcCCc
Q 009380          466 RAIWGWDDSCVFIG-NMTRTVEVISPAQ  492 (536)
Q Consensus       466 ~~~~s~~g~~l~~g-s~dg~I~v~d~~~  492 (536)
                       ..|+|-+..+++| +..|.|+||--..
T Consensus       470 -n~~HP~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  470 -NEFHPMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             -eeecccccceeccCCccceEEEEecCC
Confidence             5689988755554 5558888886443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=219.05  Aligned_cols=280  Identities=16%  Similarity=0.240  Sum_probs=217.5

Q ss_pred             EEEEEecCCccEEEEEeCCCcEEEEECCCCCCC--CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE--DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      .+..++. .+++|++|+.||.|++|++......  ...+..++.|...|+.+....++ +.|++||.|-+|++|+...+.
T Consensus        29 ~Lq~da~-~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAP-NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCC-CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc
Confidence            4444442 6678999999999999999764321  23467889999999999999888 899999999999999998763


Q ss_pred             ---EEEeecCCCceeEEEe-cCCCCCEEEEEECCCeEEEEECCCCc--cc--------eeEe-ccCCCeEEEEEecCCCC
Q 009380          317 ---FDLVYSSEYAVFSLSQ-QPNNVNTLYFGEGQGGLNIWDVRSRK--SA--------TEWL-LHEARINTIDFNPRNPN  381 (536)
Q Consensus       317 ---~~~~~~~~~~i~~l~~-~~~~~~~l~~g~~dg~i~i~d~~~~~--~~--------~~~~-~h~~~i~~i~~~p~~~~  381 (536)
                         ...+..|...|.|+++ .++. .++++|+.|+.|.+||+.++.  .+        ..+. ++...|++++.++.+ .
T Consensus       107 ~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t  184 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-T  184 (735)
T ss_pred             chhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-e
Confidence               3345578999999999 5554 899999999999999999772  22        2233 788899999999977 7


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      +|++|+..+.|++||.++.+    ....+.+|...|..+..++||..+++++.||+|++||+...+++.++..+.. +  
T Consensus       185 ~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~--  257 (735)
T KOG0308|consen  185 IIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-G--  257 (735)
T ss_pred             EEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-c--
Confidence            99999999999999999964    7788889999999999999999999999999999999999999888754332 2  


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc-eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV-ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~-~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +..  ..-+|+=..+++|+.||.|..-|+.+.... ..++.. ..+  ..+..+-.+ +-+-+++.|+.|.-|..
T Consensus       258 VWa--L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~d-aPv--~~l~~~~~~-~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  258 VWA--LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKED-APV--LKLHLHEHD-NSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             eEE--EeeCCCcceEEecCCCCcEEecccCCchhheEeecCC-Cch--hhhhhcccc-CCceeeeccccceecCC
Confidence            333  333577788999999999999999885322 222211 111  122333223 34467778888888865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.4e-25  Score=193.15  Aligned_cols=254  Identities=16%  Similarity=0.195  Sum_probs=206.6

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCccEEE
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      .+-..|.|-|+.++..-.|+.|+++          +.|+.|+++......    ...+.+|.++|+.++|....-|.+||
T Consensus         5 ~idt~H~D~IHda~lDyygkrlATc----------sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLA   74 (299)
T KOG1332|consen    5 TIDTQHEDMIHDAQLDYYGKRLATC----------SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILA   74 (299)
T ss_pred             ehhhhhhhhhhHhhhhhhcceeeee----------cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEee
Confidence            3456799999999999999999954          788888888874432    34568999999999997655889999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEEEECCCeEEEEECCCC----eEEEeecCCCce
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFTSCYDGLIRLMDAEKE----VFDLVYSSEYAV  327 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~I~vwd~~~~----~~~~~~~~~~~i  327 (536)
                      +++.||.|.||.-..+.  ....+.+..|...|++++|.|... -.|++++.||.|.|++.+..    .......|.-.|
T Consensus        75 ScsYDgkVIiWke~~g~--w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv  152 (299)
T KOG1332|consen   75 SCSYDGKVIIWKEENGR--WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV  152 (299)
T ss_pred             EeecCceEEEEecCCCc--hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence            99999999999988753  567778889999999999999753 46888999999999998764    234456788999


Q ss_pred             eEEEecCCC-------------CCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCC---CCEEEEEeCC
Q 009380          328 FSLSQQPNN-------------VNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRN---PNIMATSSTD  389 (536)
Q Consensus       328 ~~l~~~~~~-------------~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~---~~~l~s~s~d  389 (536)
                      ++++|.|..             ...|++|+.|..|+||+...+.-  -.++.+|.+.|+.++|.|..   ..++|+++.|
T Consensus       153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD  232 (299)
T KOG1332|consen  153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD  232 (299)
T ss_pred             ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence            999999862             14599999999999999987643  45588999999999999964   3489999999


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                      |+|.||-.+... ..-....+......+.+++||+.|+.|++++.|+.|.+|.-
T Consensus       233 g~viIwt~~~e~-e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  233 GTVIIWTKDEEY-EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             CcEEEEEecCcc-CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence            999999877421 11122222346778999999999999999999999999964

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.8e-24  Score=192.30  Aligned_cols=247  Identities=15%  Similarity=0.190  Sum_probs=195.5

Q ss_pred             CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-CCEEEEEEC
Q 009380          225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCY  303 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~  303 (536)
                      .|.-....|.+.|++++.    ++.++|+|+.|-+|+|||+..    ...+..+..|.+.|+++.|.+.. .+.|++|+.
T Consensus        34 ~~lF~~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k----~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd  105 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV----SGPYVASGSSDETIHIYDMRK----RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD  105 (362)
T ss_pred             eccccccccccceeEEEe----cceeEeccCCCCcEEEEeccc----hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence            344456789999999999    668999999999999999998    67788888999999999999875 138999999


Q ss_pred             CCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          304 DGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       304 dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      ||.|.+|+...=.+. .+..|.+.|+.++.+|.+ .+.++.+.|+.+++||+-.|+.-..+.. ...-+.|.|+|.|. +
T Consensus       106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd-~  182 (362)
T KOG0294|consen  106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGD-H  182 (362)
T ss_pred             CCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCC-E
Confidence            999999999875443 455788899999999998 8888999999999999999987665552 22234499999885 5


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCce
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRW  461 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~  461 (536)
                      |+.++.+ .|-||.+.+.     .++........+.++.|. ++.+|++|+.|+.|.+||..+..+...+. |.+.    
T Consensus       183 F~v~~~~-~i~i~q~d~A-----~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R----  251 (362)
T KOG0294|consen  183 FVVSGRN-KIDIYQLDNA-----SVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR----  251 (362)
T ss_pred             EEEEecc-EEEEEecccH-----hHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhh----
Confidence            6666554 5899998874     233333444667777776 56789999999999999999877777664 3332    


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      +..+...-.|++.||++++.||.|+|||+...
T Consensus       252 VK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  252 VKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            33333334678899999999999999999765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=4.9e-24  Score=209.61  Aligned_cols=342  Identities=12%  Similarity=0.149  Sum_probs=253.1

Q ss_pred             ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc----ccc----cccCCceEEEEE
Q 009380          171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE----NIA----RIMPGRITQMKF  242 (536)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~----~~~----~~~~~~I~~v~~  242 (536)
                      -+.++...+-||.|+|.++.+.|.+..|.          +.++|.++.+|.-.....    .+.    .+..+.-+...|
T Consensus       255 ~~is~eall~GHeDWV~sv~W~p~~~~LL----------SASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw  324 (764)
T KOG1063|consen  255 YRISFEALLMGHEDWVYSVWWHPEGLDLL----------SASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLW  324 (764)
T ss_pred             EEEehhhhhcCcccceEEEEEccchhhhe----------ecccCcceEEEecCCccceEEEEEEeecccccccceeeEEE
Confidence            34566677889999999999999995554          457888889998543311    111    122456889999


Q ss_pred             EecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-----E
Q 009380          243 LPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-----F  317 (536)
Q Consensus       243 ~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-----~  317 (536)
                      +|  +++.+++-+..|..++|...+.. .........+|.+.|.+++|+|.| .+|+++|.|.+-|++-.-..+     +
T Consensus       325 ~~--n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEi  400 (764)
T KOG1063|consen  325 SP--NSNVIIAHGRTGGFHLWKTKDKT-FWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEI  400 (764)
T ss_pred             cC--CCCEEEEecccCcEEEEeccCcc-ceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeee
Confidence            99  88999999999999999933211 134555678999999999999999 999999999999998765221     2


Q ss_pred             EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-----------------------------------------
Q 009380          318 DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-----------------------------------------  356 (536)
Q Consensus       318 ~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-----------------------------------------  356 (536)
                      ....-|...++|++|-+.. ..+++|.....+++|+...                                         
T Consensus       401 aRPQiHGyDl~c~~~vn~~-~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~  479 (764)
T KOG1063|consen  401 ARPQIHGYDLTCLSFVNED-LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET  479 (764)
T ss_pred             cccccccccceeeehccCC-ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence            2233477889999998853 6788888888888887320                                         


Q ss_pred             --Cc---------------------------------cceeEeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEe
Q 009380          357 --RK---------------------------------SATEWLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWD  396 (536)
Q Consensus       357 --~~---------------------------------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwd  396 (536)
                        |.                                 .++.+.+|...|++++.+|++ +++|+++..     -.|++|+
T Consensus       480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~  558 (764)
T KOG1063|consen  480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWN  558 (764)
T ss_pred             ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEe
Confidence              00                                 122234688899999999977 899999864     3589999


Q ss_pred             CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380          397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDSC  475 (536)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~  475 (536)
                      ..+..    +...+..|.-.|+.++|||||++|++.|.|.++.+|....... ...+.....+.+.+.  .+.|+|++.+
T Consensus       559 t~~W~----~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIW--dcsW~pde~~  632 (764)
T KOG1063|consen  559 TANWL----QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIW--DCSWSPDEKY  632 (764)
T ss_pred             ccchh----hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEE--EcccCcccce
Confidence            88753    4556779999999999999999999999999999998743321 122222334444444  4889999999


Q ss_pred             EEEEcCCCcEEEEcCCcc--ccceeccC-CceeeeeeeEeecCCC----CCEEEEEccCCeEEEEec
Q 009380          476 VFIGNMTRTVEVISPAQR--RSVATLQS-PYISAIPCRFHAHPHQ----VGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~~~--~~~~~l~~-~~~~~~~~~~~~~p~~----~~~lasgs~Dg~v~iW~~  535 (536)
                      |+++|.|.+|.||.....  +.+..+.. .+...+ +.++++|.+    +..++.|-..|.|.||..
T Consensus       633 FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aV-TAv~~~~~~~~e~~~~vavGle~GeI~l~~~  698 (764)
T KOG1063|consen  633 FATASRDKKVKVWEEPDLRDKYISRFACLKFSLAV-TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRR  698 (764)
T ss_pred             eEEecCCceEEEEeccCchhhhhhhhchhccCCce-eeEEeeccccccccceEEEEecccEEEEEec
Confidence            999999999999998877  44444322 122233 456665543    348899999999999974

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.6e-24  Score=200.76  Aligned_cols=287  Identities=16%  Similarity=0.231  Sum_probs=225.1

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ....+.|++|.|||  ...+|++++.||+++||.++...  ...+..+.-...+|.+.+|.|+|...+++++....++.|
T Consensus       210 ~ps~~~I~sv~FHp--~~plllvaG~d~~lrifqvDGk~--N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy  285 (514)
T KOG2055|consen  210 HPSHGGITSVQFHP--TAPLLLVAGLDGTLRIFQVDGKV--NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY  285 (514)
T ss_pred             CcCcCCceEEEecC--CCceEEEecCCCcEEEEEecCcc--ChhheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence            33468999999999  89999999999999999998643  456666666778999999999995599999999999999


Q ss_pred             ECCCCeEEEee---cCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          311 DAEKEVFDLVY---SSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       311 d~~~~~~~~~~---~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      |+.+.+...+.   ++. ..+.....++++ ++|+..+..|.|.+....+++.+..++ -.+.|..++|+.++ ..|+++
T Consensus       286 Dle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSds-k~l~~~  362 (514)
T KOG2055|consen  286 DLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDS-KELLAS  362 (514)
T ss_pred             eccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCC-cEEEEE
Confidence            99988765443   333 456778889998 799999999999999999999998887 57889999999988 566666


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCce--eEEEEccCCCeEEEEeCCCcEEEEeCCC------CCcceEEeccCCC
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAV--HSAYFSPSGSSLATTSFDDTIGIWSGVN------FENTSMIHHNNQT  458 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v--~~l~~sp~g~~l~t~s~dg~I~iwd~~~------~~~~~~~~~~~~~  458 (536)
                      +.+|.|.+||++..     .++....-.+.|  ++++.+++|.|||+|+..|.|.|||..+      .+++..+   ...
T Consensus       363 ~~~GeV~v~nl~~~-----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~---dNL  434 (514)
T KOG2055|consen  363 GGTGEVYVWNLRQN-----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV---DNL  434 (514)
T ss_pred             cCCceEEEEecCCc-----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhh---hhh
Confidence            67899999999985     344444444444  5677778999999999999999999653      2222222   111


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcC--CCcEEEEcCCccccceeccCCcee-eeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNM--TRTVEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~--dg~I~v~d~~~~~~~~~l~~~~~~-~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ...++  .+.|++++++|+++|.  +..+++-.+.+......++..... ....+++|+| .+.+||.|..+|+|.+|.+
T Consensus       435 tt~It--sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  435 TTAIT--SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             heeee--eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeEee
Confidence            22233  3779999999888875  467999998888777776643221 2235689999 4699999999999999986

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=4.5e-23  Score=201.22  Aligned_cols=270  Identities=14%  Similarity=0.113  Sum_probs=195.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEYAV  327 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~~i  327 (536)
                      .++++++.|+.|.+||+.+    ...+..+..|.. +.+++|+|++ ..+ ++++.++.|++||+.++...........+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t----~~~~~~~~~~~~-~~~l~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~   75 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTAT----LEVTRTFPVGQR-PRGITLSKDG-KLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP   75 (300)
T ss_pred             cEEEEecCCCEEEEEECCC----CceEEEEECCCC-CCceEECCCC-CEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence            5788999999999999987    566777766544 6789999998 665 66778999999999988766544444456


Q ss_pred             eEEEecCCCCCEEEE-EECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCCCCC
Q 009380          328 FSLSQQPNNVNTLYF-GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-TACIWDLRSMATDKP  405 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-~i~iwdl~~~~~~~~  405 (536)
                      ..++|+|++ +.+++ +..++.|.+||+.+.+.+..+. +...+.+++|+|++ .++++++.++ .+.+||..++.    
T Consensus        76 ~~~~~~~~g-~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~----  148 (300)
T TIGR03866        76 ELFALHPNG-KILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYE----  148 (300)
T ss_pred             cEEEECCCC-CEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCe----
Confidence            788999998 55554 4568999999999887776665 33456889999988 6777777664 56788987642    


Q ss_pred             CcceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCC--CCceeeeeEEEEcCCCCEEEEE-cC
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQ--TGRWISSFRAIWGWDDSCVFIG-NM  481 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~g-s~  481 (536)
                       ..........+.+++|+|+|++|+++ ..++.|++||+.+++....+.....  .........+.|+|++++++++ ..
T Consensus       149 -~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~  227 (300)
T TIGR03866       149 -IVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP  227 (300)
T ss_pred             -EEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC
Confidence             22222233456789999999988655 4689999999998876665542211  1111223346789999986554 45


Q ss_pred             CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE-ccCCeEEEEecC
Q 009380          482 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTSD  536 (536)
Q Consensus       482 dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg-s~Dg~v~iW~~d  536 (536)
                      ++.|.+||..+++.+..+..++   ....++|+| ++.+|+++ +.+|.|.|||++
T Consensus       228 ~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       228 ANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTP-DEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             CCeEEEEECCCCcEEEEEEeCC---CcceEEECC-CCCEEEEEcCCCCeEEEEECC
Confidence            6789999999887766553222   234678999 56788776 569999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=3.6e-24  Score=200.68  Aligned_cols=256  Identities=17%  Similarity=0.234  Sum_probs=203.6

Q ss_pred             CCceEEEEEEec-----CCccEEEEEeCCCcEEEEECCCCCCC-----------------CCceEEeccCCCCEEEEEEe
Q 009380          234 PGRITQMKFLPC-----SDVRMVVAGSKLGNITFWNLDSQQDE-----------------DNGIYLFRTHLGPISGIVTQ  291 (536)
Q Consensus       234 ~~~I~~v~~~p~-----~~~~~l~tg~~dg~v~iwd~~~~~~~-----------------~~~~~~~~~h~~~V~~l~~~  291 (536)
                      +.--.|++|...     ..|+|+|.|+.|..|.|||++-....                 ++.-..-.+|+..|..+.|+
T Consensus       173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            344467777642     34689999999999999999742110                 11111234799999999999


Q ss_pred             cCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc-eeEeccCCC
Q 009380          292 QYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA-TEWLLHEAR  369 (536)
Q Consensus       292 ~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~h~~~  369 (536)
                      ..-.+.|++||.|.+|.+||+.++++...+. |...|.++.|+|..+.+|++|+.|++|.++|.|..... ..|+ ..+.
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~  331 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGE  331 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccc
Confidence            8877899999999999999999999988776 78899999999999999999999999999999964443 3343 6788


Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      |-.++|.|..++.++++..||+|+-+|+|+..   ..+.....|..+|.++++++ ...+++|++.|+.|++|++..-.+
T Consensus       332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~  408 (463)
T KOG0270|consen  332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP  408 (463)
T ss_pred             eEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence            99999999999999999999999999999863   35667779999999999998 456789999999999999987666


Q ss_pred             ceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCccccc
Q 009380          449 TSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQRRSV  496 (536)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~~~~  496 (536)
                      .....|....++ +.  ++++.|+-. .++.|+..+.++|||+.+...+
T Consensus       409 ~~v~~~~~~~~r-l~--c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  409 KSVKEHSFKLGR-LH--CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cccccccccccc-ee--ecccCCCcceEEEecCccceEEEeecccChhH
Confidence            555555444444 22  244556544 4778888888999999877554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.93  E-value=3.1e-24  Score=197.10  Aligned_cols=259  Identities=18%  Similarity=0.270  Sum_probs=200.6

Q ss_pred             ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccc-----------------cCcccccccc
Q 009380          171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT-----------------LKPENIARIM  233 (536)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~-----------------~~~~~~~~~~  233 (536)
                      +..++....-+|..++.-+..++.++-....        +-+..|.|.+|++.                 ..|.....+|
T Consensus       139 ~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~a--------swse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh  210 (440)
T KOG0302|consen  139 RKPQIEMKSIPHYGGINRVRVSRLGNEVLCA--------SWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH  210 (440)
T ss_pred             ccccccccccccccccceeeecccCCcceee--------eecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc
Confidence            3466777778888888888888776333222        23566788889862                 2333445677


Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      .+.=+.++|||...| .|++|.--+.|++|...++.. ..-...|.+|+..|-.|+|+|.....|++||-||+|+|||++
T Consensus       211 k~EGy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR  288 (440)
T KOG0302|consen  211 KGEGYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR  288 (440)
T ss_pred             Cccceeeeccccccc-ccccCccccceEeeeeccCce-eecCccccccccchhhhccCCccCceEEeeecCceEEEEEec
Confidence            888899999996444 588898889999999987432 223345667999999999999987999999999999999999


Q ss_pred             CC---eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---CccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          314 KE---VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---RKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       314 ~~---~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      .+   .+.....|.+.|+.|.|+..-+ +|++|+.||+++|||+|+   ++++.+|+-|..+|++|.|+|.....|++++
T Consensus       289 s~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg  367 (440)
T KOG0302|consen  289 SGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG  367 (440)
T ss_pred             CCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc
Confidence            87   4556678999999999999884 999999999999999996   4668899999999999999998888999999


Q ss_pred             CCCcEEEEeCCCCCC--------------CCCCcceeecccCceeEEEEccC-CCeEEEEeCCCcEEEE
Q 009380          388 TDGTACIWDLRSMAT--------------DKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIW  441 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~--------------~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~dg~I~iw  441 (536)
                      .|.+|.|||+.....              ..++++-+..-...+..+.|++. ..+|++.+.|| +.||
T Consensus       368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            999999999875321              11112222223567888999983 35788888888 5555

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=7e-23  Score=194.58  Aligned_cols=325  Identities=14%  Similarity=0.128  Sum_probs=235.6

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF  262 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i  262 (536)
                      .-|.|+.|.++|+.+.           +..+|.|.+|+..... ....+.|++.|.+++...  +|.+|- |++|..|..
T Consensus       247 k~Vl~v~F~engdviT-----------gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~GtllS-GgKDRki~~  312 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVIT-----------GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DGTLLS-GGKDRKIIL  312 (626)
T ss_pred             eEEEEEEEcCCCCEEe-----------ecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--CccEee-cCccceEEe
Confidence            5688889999998665           5677899999863322 122248999999999998  887665 999999999


Q ss_pred             EECCCCCC------------------------------------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          263 WNLDSQQD------------------------------------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       263 wd~~~~~~------------------------------------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ||-.-...                                    +.......++|....+.++.+|+. ++++||+.|+.
T Consensus       313 Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~gqdk~  391 (626)
T KOG2106|consen  313 WDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCGQDKH  391 (626)
T ss_pred             ccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeeccCcce
Confidence            99431100                                    011112346788999999999998 99999999999


Q ss_pred             EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      +++|+  ..++........++.|+.|+|.+  .+++|+..|...+.|.++...+..-.. ..++++|.|+|+| .+||.|
T Consensus       392 v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G-~~lAvg  465 (626)
T KOG2106|consen  392 VRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG-AFLAVG  465 (626)
T ss_pred             EEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCC-CEEEEe
Confidence            99999  45555555567899999999997  899999999999999999665554444 8999999999988 799999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-----------
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-----------  455 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-----------  455 (536)
                      +.|+.|+||-+.......  ...-..+..+|+.+.|++|+++|.+-+.|-.|-.|....-......+..           
T Consensus       466 s~d~~iyiy~Vs~~g~~y--~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF  543 (626)
T KOG2106|consen  466 SHDNHIYIYRVSANGRKY--SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGF  543 (626)
T ss_pred             cCCCeEEEEEECCCCcEE--EEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence            999999999988754211  1111235589999999999999999999999999954322222211100           


Q ss_pred             ----CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc---ceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380          456 ----NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGG  528 (536)
Q Consensus       456 ----~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~---~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg  528 (536)
                          ...+..+..  ++-+.+.+++++|...|.|++|...-.+.   ...+.+| .+.+ ..++|.-.+ ..|++.+.|.
T Consensus       544 ~v~g~s~~t~i~a--~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh-s~~v-t~V~Fl~~d-~~li~tg~D~  618 (626)
T KOG2106|consen  544 EVFGGSDGTDINA--VARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH-SSHV-TNVAFLCKD-SHLISTGKDT  618 (626)
T ss_pred             EEecccCCchHHH--hhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc-ccee-EEEEEeeCC-ceEEecCCCc
Confidence                011111111  23355778899999999999998754433   3334443 3333 345554434 6777777999


Q ss_pred             eEEEEecC
Q 009380          529 QVYVWTSD  536 (536)
Q Consensus       529 ~v~iW~~d  536 (536)
                      .|..|++.
T Consensus       619 Si~qW~lv  626 (626)
T KOG2106|consen  619 SIMQWRLV  626 (626)
T ss_pred             eEEEEEeC
Confidence            99999873

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2e-23  Score=211.57  Aligned_cols=248  Identities=19%  Similarity=0.198  Sum_probs=207.9

Q ss_pred             ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380          279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~  356 (536)
                      ..|+...+.|+|.|+| ..|++|+.||.|++|+....  .+..+..+...|.+++...   +.|++|+.+++|.+|.+..
T Consensus        10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCC
Confidence            3688889999999999 89999999999999997654  2222333677788887754   5899999999999999998


Q ss_pred             CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC
Q 009380          357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD  436 (536)
Q Consensus       357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg  436 (536)
                      +..-..+....-++++++|+.+| .++|.||.|-.|++-++....    ....+.+|..+|.++.|+|++++||+.+.||
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s----~~~~lrgh~apVl~l~~~p~~~fLAvss~dG  160 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSS----QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG  160 (933)
T ss_pred             CCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccc----hheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence            87766666677899999999977 799999999999999998854    6677889999999999999999999999999


Q ss_pred             cEEEEeCCCCCcceEEeccCCCCc---eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEee
Q 009380          437 TIGIWSGVNFENTSMIHHNNQTGR---WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA  513 (536)
Q Consensus       437 ~I~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~  513 (536)
                      .|+|||+.++....++........   .-.+.+++|+|+|..|++.+.|+.|.+|+..+++....+...+.....+.+.|
T Consensus       161 ~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~w  240 (933)
T KOG1274|consen  161 KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQW  240 (933)
T ss_pred             eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEE
Confidence            999999999887776642222111   11334588999988888888999999999999999999887666555678999


Q ss_pred             cCCCCCEEEEEccCCeEEEEecC
Q 009380          514 HPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       514 ~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +|+ |.|||+++.||.|.|||+|
T Consensus       241 sPn-G~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  241 SPN-GKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             cCC-CcEEeeeccCCcEEEEecc
Confidence            995 8999999999999999986

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=2.4e-24  Score=204.17  Aligned_cols=280  Identities=14%  Similarity=0.204  Sum_probs=221.0

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCcccc----ccc--cCCceEEEEEEecCCccEEEEE
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENI----ARI--MPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~----~~~--~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      .|-.-|.++.+|..-+.+-          +++ .|+|++||+.......    +..  -.+-|.++..+|  ||+.|++|
T Consensus       417 ~HGEvVcAvtIS~~trhVy----------TgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p--dgrtLivG  483 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVY----------TGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP--DGRTLIVG  483 (705)
T ss_pred             ccCcEEEEEEecCCcceeE----------ecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecC--CCceEEec
Confidence            3555666666666666555          333 4799999985432221    111  256789999999  99999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEec
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQ  333 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~  333 (536)
                      +.-.+|.|||+....  ......+....-...+++.+||. +..++|..||.|.|||+.+.... .+.+|...+.||..+
T Consensus       484 GeastlsiWDLAapT--prikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis  560 (705)
T KOG0639|consen  484 GEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  560 (705)
T ss_pred             cccceeeeeeccCCC--cchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEec
Confidence            999999999998743  12222333334457789999998 99999999999999999988665 455799999999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH  413 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~  413 (536)
                      ++| ..|.+|+.|.+|+-||++.+..+.... ....|.++..+|.+ .+|+.|-.++.+-|......     ....+..|
T Consensus       561 ~dG-tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~skp-----~kyqlhlh  632 (705)
T KOG0639|consen  561 KDG-TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKP-----EKYQLHLH  632 (705)
T ss_pred             CCC-ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCc-cceeeecccCcEEEEecCCc-----cceeeccc
Confidence            999 899999999999999999988776654 56889999999977 79999999999888877653     45566679


Q ss_pred             cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      ..-|.++.|.+.|+++++.+.|+.+..|...-+..+.......      .++++..|.|.+||++|+.|....||.+
T Consensus       633 eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S------sVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  633 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS------SVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC------cceeeeeccCceEEEecCCCcceEEEEE
Confidence            9999999999999999999999999999887666655443222      3344677889999999999988888864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=9.6e-24  Score=198.60  Aligned_cols=301  Identities=14%  Similarity=0.158  Sum_probs=235.8

Q ss_pred             ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccc-ccc--CCceEEEEEEecCC
Q 009380          171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIM--PGRITQMKFLPCSD  247 (536)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~--~~~I~~v~~~p~~~  247 (536)
                      +++..-++-..-..+|.+++|.|...++.          ++++||.++||.++.+.+..+ ..|  .-+|.+.+|+|  +
T Consensus       201 krlkDaNa~~ps~~~I~sv~FHp~~plll----------vaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p--~  268 (514)
T KOG2055|consen  201 KRLKDANAAHPSHGGITSVQFHPTAPLLL----------VAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP--N  268 (514)
T ss_pred             EeecccccCCcCcCCceEEEecCCCceEE----------EecCCCcEEEEEecCccChhheeeeeccCccceeeecC--C
Confidence            34445555556668999999999999888          569999999999866544322 223  77999999999  8


Q ss_pred             cc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC
Q 009380          248 VR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY  325 (536)
Q Consensus       248 ~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~  325 (536)
                      |. .+++++...-++.||+.+..  ...+....++. ..+.....++++ ++|+..+..|.|.+....++.++..+...+
T Consensus       269 G~~~i~~s~rrky~ysyDle~ak--~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~KieG  345 (514)
T KOG2055|consen  269 GHSVIFTSGRRKYLYSYDLETAK--VTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIEG  345 (514)
T ss_pred             CceEEEecccceEEEEeeccccc--cccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeecc
Confidence            87 89999999999999998743  23334444444 356778889999 999999999999999999999998899999


Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe--EEEEEecCCCCEEEEEeCCCcEEEEeCCCCC-C
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI--NTIDFNPRNPNIMATSSTDGTACIWDLRSMA-T  402 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i--~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~-~  402 (536)
                      .|..++|+.++ ..|++.+.+|.|.+||++...+++.|.. .+.|  +++|.++++ .+||+|+..|.|.|||..+.- .
T Consensus       346 ~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s  422 (514)
T KOG2055|consen  346 VVSDFTFSSDS-KELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFAS  422 (514)
T ss_pred             EEeeEEEecCC-cEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCC-ceEEeccCcceEEEeccchhhcc
Confidence            99999999988 7888888899999999999999998873 3333  566777866 699999999999999976532 1


Q ss_pred             CCCCcc-eeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380          403 DKPEPM-KVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       403 ~~~~~~-~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                      ..+.++ .+......|+++.|+|++++|+.+|  .++.+++-.+.+......++..+..-..++  +++|||.+.+++.|
T Consensus       423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vt--c~aFSP~sG~lAvG  500 (514)
T KOG2055|consen  423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVT--CMAFSPNSGYLAVG  500 (514)
T ss_pred             CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceE--EEEecCCCceEEee
Confidence            123333 3335678999999999999988887  467799988876555555543333333344  47899999999999


Q ss_pred             cCCCcEEEEcCC
Q 009380          480 NMTRTVEVISPA  491 (536)
Q Consensus       480 s~dg~I~v~d~~  491 (536)
                      +.+|.|.+|.+.
T Consensus       501 Ne~grv~l~kL~  512 (514)
T KOG2055|consen  501 NEAGRVHLFKLH  512 (514)
T ss_pred             cCCCceeeEeec
Confidence            999999999763

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=7.1e-25  Score=227.35  Aligned_cols=299  Identities=17%  Similarity=0.255  Sum_probs=230.6

Q ss_pred             eeeecCCCCc-ccccccccccccccccccceEEecccccCcccc------ccccCCceEEEEEEecCCcc--EEEEEeCC
Q 009380          187 KTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENI------ARIMPGRITQMKFLPCSDVR--MVVAGSKL  257 (536)
Q Consensus       187 ~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~------~~~~~~~I~~v~~~p~~~~~--~l~tg~~d  257 (536)
                      ....++|++. +++..+..+.--.+-+.+..+.||.+.+.....      ......+-+.++|.+..++.  +||.|..|
T Consensus        10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence            3567888886 444332222222223556778888775432221      11236788999999943332  59999999


Q ss_pred             CcEEEEECCCC--CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee---cCCCceeEEEe
Q 009380          258 GNITFWNLDSQ--QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY---SSEYAVFSLSQ  332 (536)
Q Consensus       258 g~v~iwd~~~~--~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~---~~~~~i~~l~~  332 (536)
                      |.|.+||....  ......+..+..|.+.|..+.|++..+++|++|+.||.|.|||+.+-..-...   ...+.|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            99999998762  22356677888999999999999998789999999999999999875433333   24578999999


Q ss_pred             cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC--CeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCc
Q 009380          333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEP  407 (536)
Q Consensus       333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~  407 (536)
                      +..-.++|++++.+|.+.|||++..+.+-.+..|..  .+..+.|||++...+++++.|   -.|.+||+|...    .+
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as----sP  245 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS----SP  245 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC----Cc
Confidence            988778999999999999999999988877775554  478999999998888888876   469999999854    34


Q ss_pred             cee-ecccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCc
Q 009380          408 MKV-LSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRT  484 (536)
Q Consensus       408 ~~~-~~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~  484 (536)
                      ..+ .+|...|.++.|++.+ .++++++.|+.|.+|+..+++.+..+..   .+.|  ++.+.|.|... .+++++.||.
T Consensus       246 ~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~---~~nW--~fdv~w~pr~P~~~A~asfdgk  320 (1049)
T KOG0307|consen  246 LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA---QGNW--CFDVQWCPRNPSVMAAASFDGK  320 (1049)
T ss_pred             hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC---CCcc--eeeeeecCCCcchhhhheeccc
Confidence            444 4899999999999955 8999999999999999999988887754   2333  45588999766 7888999999


Q ss_pred             EEEEcCCccc
Q 009380          485 VEVISPAQRR  494 (536)
Q Consensus       485 I~v~d~~~~~  494 (536)
                      |.||.+.+..
T Consensus       321 I~I~sl~~~~  330 (1049)
T KOG0307|consen  321 ISIYSLQGTD  330 (1049)
T ss_pred             eeeeeeecCC
Confidence            9999997664

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=2e-24  Score=214.77  Aligned_cols=246  Identities=17%  Similarity=0.270  Sum_probs=195.9

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .+..|.|+. .+.++|||++..|.|.+||+.... ..+.+..|..|...|++++|++..+++|++||.||+|++||++..
T Consensus        89 S~~DVkW~~-~~~NlIAT~s~nG~i~vWdlnk~~-rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWGQ-LYSNLIATCSTNGVISVWDLNKSI-RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhccccc-chhhhheeecCCCcEEEEecCccc-cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            466788884 378999999999999999998632 156677899999999999999999999999999999999999976


Q ss_pred             eEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          316 VFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       316 ~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                      .... .++....|..+.|+|..++.|+++...|.|++||+|... +...+..|.++|.|+.|+|++ .+||||+.|+.|+
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGRDK~vk  245 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGGRDKMVK  245 (839)
T ss_pred             cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecCCCccEE
Confidence            5544 445667899999999988999999999999999999764 477888999999999999955 8999999999999


Q ss_pred             EEeCCCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEe--CCCcEEEEeCCCCC-cceEEe-ccCCCCceeeeeEEE
Q 009380          394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTS--FDDTIGIWSGVNFE-NTSMIH-HNNQTGRWISSFRAI  468 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s--~dg~I~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~~  468 (536)
                      |||+....   ...........+|..+.|-|.. .+|++++  .|-.|+|||++..- +..++. |...    ++.  ++
T Consensus       246 iWd~t~~~---~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~----vt~--i~  316 (839)
T KOG0269|consen  246 IWDMTDSR---AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS----VTG--IA  316 (839)
T ss_pred             EEeccCCC---ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc----ccc--ee
Confidence            99998753   3445555677899999999965 4566666  36779999997643 333332 2221    222  55


Q ss_pred             EcC-CCCEEEEEcCCCcEEEEcCCcc
Q 009380          469 WGW-DDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       469 ~s~-~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      |.. |...|.+++.|+.|..-.+.+.
T Consensus       317 W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  317 WDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ccCCCceeeEeecCccHHHHhhhhcc
Confidence            644 4567889999998766555443

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-22  Score=201.51  Aligned_cols=341  Identities=15%  Similarity=0.203  Sum_probs=257.6

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-cc-----ccccccCCceEEEEEEecCC
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PE-----NIARIMPGRITQMKFLPCSD  247 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~-----~~~~~~~~~I~~v~~~p~~~  247 (536)
                      ..+.++.+|...|+.+...++.-  .          ....++.+.+|+.... ..     .+.+...+-|+++ +||..-
T Consensus       105 ~i~~~~~~~~a~v~~l~~fGe~l--i----------a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TY  171 (910)
T KOG1539|consen  105 HIRHTTLLHGAKVHLLLPFGEHL--I----------AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTY  171 (910)
T ss_pred             eEEEEeccccceEEEEeeecceE--E----------EEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhh
Confidence            45556667766666555444332  2          2245678899987552 11     1222223337776 567445


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-Cc
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YA  326 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~  326 (536)
                      -+.|+.|+..|.+.||++.+    ++.+++++++...|+++.=+|-- +.++.|..+|+|.++++..++....+.++ +.
T Consensus       172 LNKIvvGs~~G~lql~Nvrt----~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~  246 (910)
T KOG1539|consen  172 LNKIVVGSSQGRLQLWNVRT----GKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGR  246 (910)
T ss_pred             eeeEEEeecCCcEEEEEecc----CcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccc
Confidence            57899999999999999998    89999999999999999999987 89999999999999999999999999886 99


Q ss_pred             eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                      |++++|..||..++++|+..|.+.+||+...+.+..+. .|.+.|....|.|.. .++++++.|..+++|=..++.....
T Consensus       247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR  325 (910)
T KOG1539|consen  247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPR  325 (910)
T ss_pred             eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcch
Confidence            99999999998899999999999999999888776665 899999999999954 6999999999999997776654433


Q ss_pred             CcceeecccCceeEEEEc-cCCCeEEEEeCCCcEEEEeCCCCC----------------------------cceEEe---
Q 009380          406 EPMKVLSHKRAVHSAYFS-PSGSSLATTSFDDTIGIWSGVNFE----------------------------NTSMIH---  453 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~----------------------------~~~~~~---  453 (536)
                      ......+|..+..++.|. .+|..+.+++.|++++.|++....                            ++..+.   
T Consensus       326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~  405 (910)
T KOG1539|consen  326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN  405 (910)
T ss_pred             heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence            333445899999999998 488899999999988888742100                            000000   


Q ss_pred             ------------cc------------CCCC-----------ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccccee
Q 009380          454 ------------HN------------NQTG-----------RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVAT  498 (536)
Q Consensus       454 ------------~~------------~~~~-----------~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~  498 (536)
                                  |.            ...|           ..+.+.+++.++.|++.++|...|.|.+|++++|-....
T Consensus       406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s  485 (910)
T KOG1539|consen  406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS  485 (910)
T ss_pred             chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence                        00            0000           113344567788999999999999999999999977777


Q ss_pred             cc---CCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          499 LQ---SPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       499 l~---~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +.   .|...+.  .++..-. .+.+++++.+|.+.+|+..
T Consensus       486 f~~~~ah~~~V~--gla~D~~-n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  486 FGDSPAHKGEVT--GLAVDGT-NRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             cccCccccCcee--EEEecCC-CceEEEccCcceEEEEecC
Confidence            72   3444443  4555443 3789999999999999963

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=3.3e-22  Score=195.07  Aligned_cols=275  Identities=11%  Similarity=0.134  Sum_probs=194.6

Q ss_pred             cccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          210 KIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      +.+.|+.+.+|++..... ..... ...+.+++|+|  ++..+ ++++.++.|++||+.+    ......+..+.. +..
T Consensus         6 s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~--dg~~l~~~~~~~~~v~~~d~~~----~~~~~~~~~~~~-~~~   77 (300)
T TIGR03866         6 SNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSK--DGKLLYVCASDSDTIQVIDLAT----GEVIGTLPSGPD-PEL   77 (300)
T ss_pred             EecCCCEEEEEECCCCceEEEEEC-CCCCCceEECC--CCCEEEEEECCCCeEEEEECCC----CcEEEeccCCCC-ccE
Confidence            456788999999854332 22232 34577899999  88766 6677889999999987    455555555443 567


Q ss_pred             EEEecCCCCEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-eEEEEECCCCccceeEec
Q 009380          288 IVTQQYCLSKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-GLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       288 l~~~~~~~~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~~  365 (536)
                      ++|+|++ +.++ +++.|+.|++||+.+......+.....+.+++|+|++ .+++++..++ .+.+||..+++....+. 
T Consensus        78 ~~~~~~g-~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~~~-  154 (300)
T TIGR03866        78 FALHPNG-KILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDNVL-  154 (300)
T ss_pred             EEECCCC-CEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence            8999998 6665 4566899999999987766655555567899999998 7888777664 57788998877655543 


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cc--cCceeEEEEccCCCeEEEE-eCCCcEEEE
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SH--KRAVHSAYFSPSGSSLATT-SFDDTIGIW  441 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~--~~~v~~l~~sp~g~~l~t~-s~dg~I~iw  441 (536)
                      ....+.+++|+|++..+++++..++.|++||+.+++.......... .+  ......+.|+|++++++++ +.++.|.+|
T Consensus       155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~  234 (300)
T TIGR03866       155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV  234 (300)
T ss_pred             cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence            3345678999998854445666799999999998642110000000 01  1123568899999986554 556789999


Q ss_pred             eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceeccC
Q 009380          442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      |+.+++....+.+.    ..+  ..+.|+|+|++|++++ .++.|.+||+.+++.+..+..
T Consensus       235 d~~~~~~~~~~~~~----~~~--~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       235 DAKTYEVLDYLLVG----QRV--WQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             ECCCCcEEEEEEeC----CCc--ceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            99887766544322    122  2367999999998874 589999999999998888864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2.7e-22  Score=197.64  Aligned_cols=242  Identities=12%  Similarity=0.137  Sum_probs=181.2

Q ss_pred             EEEEecCCCCEEEEEECCCeEEEEECCC----CeEEEeecCCCceeEEEecCCC----------CCEEEEEECCCeEEEE
Q 009380          287 GIVTQQYCLSKIFTSCYDGLIRLMDAEK----EVFDLVYSSEYAVFSLSQQPNN----------VNTLYFGEGQGGLNIW  352 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~----~~~~~~~~~~~~i~~l~~~~~~----------~~~l~~g~~dg~i~i~  352 (536)
                      ++.|.+.. ..|...-.|..|+|||++.    +++.....|...|+++.-.|-+          +..+.+++.|++|++|
T Consensus       329 A~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  329 ACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             EEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            56677776 7888888999999999985    4666677788888887765511          2368999999999999


Q ss_pred             ECCCCccceeE-------------------------------------eccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          353 DVRSRKSATEW-------------------------------------LLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       353 d~~~~~~~~~~-------------------------------------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                      |+..+..-..+                                     -.....+.+++.+|++ ++||+|..-|+|+||
T Consensus       408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy  486 (1080)
T KOG1408|consen  408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDRGGNLRVY  486 (1080)
T ss_pred             ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCccCceEEE
Confidence            98752110000                                     0122358999999988 799999999999999


Q ss_pred             eCCCCCCCCCCcceeecccCceeEEEEcc---CCCeEEEEeCCCcEEEEeCCC-CCcceEEe------------------
Q 009380          396 DLRSMATDKPEPMKVLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVN-FENTSMIH------------------  453 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~t~s~dg~I~iwd~~~-~~~~~~~~------------------  453 (536)
                      |+....    ....+..|...|.|+.|+.   ..++|++++.|..|.|||+.. ...+.++.                  
T Consensus       487 ~Lq~l~----~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~  562 (1080)
T KOG1408|consen  487 DLQELE----YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR  562 (1080)
T ss_pred             Eehhhh----hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence            999854    5667779999999999986   347899999999999999642 11111110                  


Q ss_pred             --------------------------ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee-e
Q 009380          454 --------------------------HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS-A  506 (536)
Q Consensus       454 --------------------------~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~-~  506 (536)
                                                ...++....+.+.+...|..+++++++.|+.|+||++.++++...|++.+.. .
T Consensus       563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG  642 (1080)
T ss_pred             EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence                                      0011112233445667888999999999999999999999999999875433 2


Q ss_pred             eeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          507 IPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ..+.+...| .+.|||+...|.+|.|+|.
T Consensus       643 ~lIKv~lDP-SgiY~atScsdktl~~~Df  670 (1080)
T KOG1408|consen  643 DLIKVILDP-SGIYLATSCSDKTLCFVDF  670 (1080)
T ss_pred             ceEEEEECC-CccEEEEeecCCceEEEEe
Confidence            334667777 4699999999999999985

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=197.16  Aligned_cols=230  Identities=17%  Similarity=0.270  Sum_probs=189.5

Q ss_pred             cccccceEEecccccC----cccc------------------ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC
Q 009380          210 KIEVGSCVDIGSLTLK----PENI------------------ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS  267 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~----~~~~------------------~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~  267 (536)
                      -+.++..|.+||+...    |...                  ..+|++.|.+++|+.. -.+.||+|+.|.+|.+||+.+
T Consensus       197 iGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~lWD~~~  275 (463)
T KOG0270|consen  197 IGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKLWDVDT  275 (463)
T ss_pred             EeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEEEEcCC
Confidence            4678889999998532    2111                  1268888999999874 557999999999999999998


Q ss_pred             CCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380          268 QQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ  346 (536)
Q Consensus       268 ~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d  346 (536)
                          +.+..++..|.+.|.++.|+|..+..|++|++|++|.+.|.+. ..........+.|-.+.|.|...+.+++++.|
T Consensus       276 ----g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd  351 (463)
T KOG0270|consen  276 ----GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD  351 (463)
T ss_pred             ----CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence                7888899999999999999999999999999999999999984 23334455678999999999999999999999


Q ss_pred             CeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc---CceeEEEE
Q 009380          347 GGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK---RAVHSAYF  422 (536)
Q Consensus       347 g~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~---~~v~~l~~  422 (536)
                      |+|+-+|+|.. +++.+++.|.+.|.+|++++..+.+++|++.|+.|++|++.....     .....|.   +...|.++
T Consensus       352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-----~~v~~~~~~~~rl~c~~~  426 (463)
T KOG0270|consen  352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-----KSVKEHSFKLGRLHCFAL  426 (463)
T ss_pred             ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-----cccccccccccceeeccc
Confidence            99999999975 889999999999999999999999999999999999999986432     1112221   23667778


Q ss_pred             ccCC-CeEEEEeCCCcEEEEeCCCCCcc
Q 009380          423 SPSG-SSLATTSFDDTIGIWSGVNFENT  449 (536)
Q Consensus       423 sp~g-~~l~t~s~dg~I~iwd~~~~~~~  449 (536)
                      .|+- -.++.|+..+.++|||+.+...+
T Consensus       427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             CCCcceEEEecCccceEEEeecccChhH
Confidence            8854 46777888888999998776544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=182.51  Aligned_cols=293  Identities=17%  Similarity=0.190  Sum_probs=212.0

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccc--cccCCceEEEEEEecCCcc
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIA--RIMPGRITQMKFLPCSDVR  249 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~--~~~~~~I~~v~~~p~~~~~  249 (536)
                      +..+|+||.+.|.++.|+.||+.|+++          ..|+.|+||++..-..   ...  ..--+.-+.++|.|  |-.
T Consensus        78 ~~~~LKgH~~~vt~~~FsSdGK~lat~----------~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap--Dc~  145 (420)
T KOG2096|consen   78 NVSVLKGHKKEVTDVAFSSDGKKLATI----------SGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP--DCK  145 (420)
T ss_pred             hhhhhhccCCceeeeEEcCCCceeEEE----------eCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC--Ccc
Confidence            346799999999999999999999955          7889999999742111   111  11135678999999  665


Q ss_pred             EEEE-EeCCCcEEEEECCCCCCCCCce---------EEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE
Q 009380          250 MVVA-GSKLGNITFWNLDSQQDEDNGI---------YLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL  319 (536)
Q Consensus       250 ~l~t-g~~dg~v~iwd~~~~~~~~~~~---------~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~  319 (536)
                      -++. .-....+++|.+..... +...         ..-..|...|..+-....+ .+|++++.|..|.+|++....+..
T Consensus       146 s~vv~~~~g~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lkGq~L~~  223 (420)
T KOG2096|consen  146 SVVVSVKRGNKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLKGQLLQS  223 (420)
T ss_pred             eEEEEEccCCEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecCCceeee
Confidence            5444 44456899998865332 1111         1223466677777777666 999999999999999999655555


Q ss_pred             eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---C-----ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          320 VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---R-----KSATEWLLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       320 ~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~-----~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      +-.....-...+.+|+| +++++++..-.|.+|.+--   |     ..+..+.+|...|..++|+|+. ..++|.|.||+
T Consensus       224 idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~  301 (420)
T KOG2096|consen  224 IDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGK  301 (420)
T ss_pred             eccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCc
Confidence            55555667788999999 8999999888999998742   2     2256678999999999999976 68999999999


Q ss_pred             EEEEeCCCC--CCCCCCccee-----ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          392 ACIWDLRSM--ATDKPEPMKV-----LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       392 i~iwdl~~~--~~~~~~~~~~-----~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                      ++|||..-.  ....+.++..     ....+.-..+..+|+|+.|+.+. ...|++|..++++....+...  .+..+++
T Consensus       302 wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~--h~~~Is~  378 (420)
T KOG2096|consen  302 WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI--HSTTISS  378 (420)
T ss_pred             EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh--hcCceee
Confidence            999997531  1111222221     12333445899999999777755 456999999988776666432  2333444


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d  489 (536)
                        +.|+++|+++++++ |+.++++.
T Consensus       379 --is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  379 --ISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             --EEecCCCcEEeeec-ceeeeeec
Confidence              77999999999987 67788875

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=3.7e-23  Score=201.15  Aligned_cols=201  Identities=19%  Similarity=0.315  Sum_probs=151.9

Q ss_pred             eeEEEecCCCCCEEEEEECCCeEEEEECCCCc-------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-------SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      |+.+.|.|-+...|++++.||.|++|.+..+.       +-..+..|...|+++.|||--.++|++++.|-+|++||+++
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~  709 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN  709 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence            68888999888899999999999999987643       34567789999999999998878999999999999999999


Q ss_pred             CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380          400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                      ++    ....+.+|...|..++|||+|+.+++.|.||+|++|+.+..+.... ......+  ...-++.|.-+|+++++.
T Consensus       710 ~~----~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-Eg~gpvg--tRgARi~wacdgr~viv~  782 (1012)
T KOG1445|consen  710 AK----LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-EGKGPVG--TRGARILWACDGRIVIVV  782 (1012)
T ss_pred             hh----hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-cCCCCcc--CcceeEEEEecCcEEEEe
Confidence            65    5667789999999999999999999999999999999887643322 1222222  122346788899999888


Q ss_pred             cCC----CcEEEEcCCccc--cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          480 NMT----RTVEVISPAQRR--SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       480 s~d----g~I~v~d~~~~~--~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +.|    +.|.+||..+-.  .+++..-.-.... ..-.+.+..+-+|++|-.|..|++|.+
T Consensus       783 Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~-LvP~YD~Ds~~lfltGKGD~~v~~yEv  843 (1012)
T KOG1445|consen  783 GFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP-LVPHYDYDSNVLFLTGKGDRFVNMYEV  843 (1012)
T ss_pred             cccccchhhhhhhhhhhccCCcceeeeecccCcc-ccccccCCCceEEEecCCCceEEEEEe
Confidence            777    568899876542  3333221111111 112233434457889999999999975

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.4e-21  Score=192.29  Aligned_cols=238  Identities=17%  Similarity=0.178  Sum_probs=194.0

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCc--ccccccc-CCceEEEEEEecCCccEEEEEeCCC
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIM-PGRITQMKFLPCSDVRMVVAGSKLG  258 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~-~~~I~~v~~~p~~~~~~l~tg~~dg  258 (536)
                      -..+|.+++++.+.+.||          .+..+|.|.+|++....  ..++.++ ...|.+++|++   +..|++.+.+|
T Consensus        24 ~Ps~I~slA~s~kS~~lA----------vsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg   90 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLA----------VSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSG   90 (691)
T ss_pred             eccceEEEEEeccCCcee----------eeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCc
Confidence            346788889988888877          35788999999985543  3334444 67899999995   45778888899


Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE--ee-cCCCceeEEEecCC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VY-SSEYAVFSLSQQPN  335 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~--~~-~~~~~i~~l~~~~~  335 (536)
                      .|.-||+.+    .+....+....+.|++++.+|.+ ..++.|+.||.+..++...+++..  .+ ...+.|.++.|+|+
T Consensus        91 ~i~EwDl~~----lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen   91 SITEWDLHT----LKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT  165 (691)
T ss_pred             eEEEEeccc----CceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence            999999998    78889999999999999999998 999999999988888888776543  23 34589999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCccceeEe-----c---cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKSATEWL-----L---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-----~---h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      + ..++.|+.||.|++||..++..++...     .   ..--|.++.|..++  .+++|..-|+|.+||...+.    ..
T Consensus       166 ~-~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT----Li  238 (691)
T KOG2048|consen  166 G-TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT----LI  238 (691)
T ss_pred             c-cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc----hh
Confidence            8 779999999999999999988765221     1   22347788888655  79999999999999998864    55


Q ss_pred             ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      .....|...|.+++..++++++++++.|+.|..|...
T Consensus       239 qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~  275 (691)
T KOG2048|consen  239 QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT  275 (691)
T ss_pred             hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence            5666799999999999999999999999988877643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.6e-23  Score=186.80  Aligned_cols=278  Identities=14%  Similarity=0.236  Sum_probs=204.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC-CCCEEEEEECCCeEEEEECCCCeEE--Eeec-C-
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY-CLSKIFTSCYDGLIRLMDAEKEVFD--LVYS-S-  323 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~-~-  323 (536)
                      ..+|++-.+|.|++||..+    +..+..|++|...++.+.|... ++..+.+|+.||+|++||++.....  ..+. + 
T Consensus        41 ~~vav~lSngsv~lyd~~t----g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGT----GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccc----hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            4688888999999999998    7888999999999999999875 6689999999999999999875332  2222 2 


Q ss_pred             CCceeEEEecCCCCCEEEEEEC----CCeEEEEECCCCcc-ceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEG----QGGLNIWDVRSRKS-ATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~----dg~i~i~d~~~~~~-~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                      ..+..+++....+ +++++|+.    +-.|.+||+|..+. +..+. .|.+.|++++|+|.++++|++||.||.|.+||+
T Consensus       117 ~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  117 GTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             CCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            2467777777665 78888763    56899999998766 55554 899999999999999999999999999999999


Q ss_pred             CCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC-------ceeeeeEEEE
Q 009380          398 RSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG-------RWISSFRAIW  469 (536)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  469 (536)
                      .... ....++.+..|...|.++.|..++ +.|.+-+...+..+|++..+.+...+.......       ..-..+.. .
T Consensus       196 ~~d~-EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~  273 (376)
T KOG1188|consen  196 KKDN-EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-H  273 (376)
T ss_pred             CCCc-chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-c
Confidence            8753 234566777899999999999876 458888889999999999887555443221000       00011111 2


Q ss_pred             cC-CCCEEEEEcC-CCcEEEEcCC------ccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          470 GW-DDSCVFIGNM-TRTVEVISPA------QRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       470 s~-~g~~l~~gs~-dg~I~v~d~~------~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +| +...++.++. -+...++-+.      ..+.+..+.++|..++ -.+.|.- .+.++.+||+||.|.+|..
T Consensus       274 ~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiV-R~i~~~~-~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  274 SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIV-RDILFDV-KNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHH-HHHhhhc-ccceeeccCCCceEEEEec
Confidence            23 3445444444 4555555432      2345666777666665 3345543 4589999999999999984

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3e-23  Score=195.72  Aligned_cols=230  Identities=14%  Similarity=0.246  Sum_probs=193.3

Q ss_pred             eEEecccccCcccc-ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380          216 CVDIGSLTLKPENI-ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC  294 (536)
Q Consensus       216 ~v~lw~~~~~~~~~-~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  294 (536)
                      .|.+|.+......+ .-..++.|.+++-+|  +|.+|+.|+..|.|++|.+.+    +..+..+.+|-..|+|+.|+.|+
T Consensus        62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n--~G~~l~ag~i~g~lYlWelss----G~LL~v~~aHYQ~ITcL~fs~dg  135 (476)
T KOG0646|consen   62 LLHVWEILKKDQVVQYIVLPGPVHALASSN--LGYFLLAGTISGNLYLWELSS----GILLNVLSAHYQSITCLKFSDDG  135 (476)
T ss_pred             cccccccCchhhhhhhcccccceeeeecCC--CceEEEeecccCcEEEEEecc----ccHHHHHHhhccceeEEEEeCCC
Confidence            78889874443333 234589999999999  999999999999999999999    78888999999999999999999


Q ss_pred             CCEEEEEECCCeEEEEECCC----------CeEEEeecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeE
Q 009380          295 LSKIFTSCYDGLIRLMDAEK----------EVFDLVYSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEW  363 (536)
Q Consensus       295 ~~~l~s~s~dg~I~vwd~~~----------~~~~~~~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~  363 (536)
                       .+|+|||.||.|.+|++..          .....+..|.-+|+++...+.+ ...+++++.|.++++||+..+..+.++
T Consensus       136 -s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti  214 (476)
T KOG0646|consen  136 -SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI  214 (476)
T ss_pred             -cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence             9999999999999998743          1223444688899999987763 258999999999999999999888777


Q ss_pred             eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC------------CCCCcceeecccC--ceeEEEEccCCCeE
Q 009380          364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT------------DKPEPMKVLSHKR--AVHSAYFSPSGSSL  429 (536)
Q Consensus       364 ~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~------------~~~~~~~~~~~~~--~v~~l~~sp~g~~l  429 (536)
                      . ....+.+++..|.+ ..+..|+.+|.|.+.++.+...            .......+.+|.+  .|+|++++-||.+|
T Consensus       215 ~-fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL  292 (476)
T KOG0646|consen  215 T-FPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL  292 (476)
T ss_pred             e-cCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence            6 67899999999965 7999999999999998876541            1223344557887  99999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCCcceEEec
Q 009380          430 ATTSFDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~~~~~~~~~  454 (536)
                      ++|+.||.+.|||+.+.++++++.+
T Consensus       293 lSGd~dg~VcvWdi~S~Q~iRtl~~  317 (476)
T KOG0646|consen  293 LSGDEDGKVCVWDIYSKQCIRTLQT  317 (476)
T ss_pred             EeeCCCCCEEEEecchHHHHHHHhh
Confidence            9999999999999998888877753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.91  E-value=3.3e-23  Score=190.35  Aligned_cols=213  Identities=23%  Similarity=0.360  Sum_probs=177.5

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC------------CCCCCceEEeccCCCCEEEEEEecCCCCEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ------------QDEDNGIYLFRTHLGPISGIVTQQYCLSKI  298 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  298 (536)
                      -.|.+.|+.+..++..+..+.++=+..|.|.||++...            .....+++++.+|.+.=.+|+|+|-....|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            45778888888888555567777788999999998632            113578899999999999999999654678


Q ss_pred             EEEECCCeEEEEECCCCeEE----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEE
Q 009380          299 FTSCYDGLIRLMDAEKEVFD----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINT  372 (536)
Q Consensus       299 ~s~s~dg~I~vwd~~~~~~~----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~  372 (536)
                      +||.--+.|++|...++...    .+.+|...|-.++|+|...+.|++|+.||+|+|||+|.+..  ....+.|.+.|+-
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            99988899999999887553    34569999999999999989999999999999999998732  2223689999999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      |.|+..-+ +||+|+.||+++|||+|..+.. ..+..+..|..+|++|.|+| +...|++++.|.+|.|||+.-
T Consensus       308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  308 ISWNRREP-LLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             EEccCCcc-eeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99999775 9999999999999999998754 34445668999999999999 557889999999999999853

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.91  E-value=8.8e-23  Score=184.52  Aligned_cols=323  Identities=15%  Similarity=0.125  Sum_probs=225.6

Q ss_pred             cccccceeeeecCC-----CCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecC--CccEEE
Q 009380          180 KDEFNGFKTCKDEG-----LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCS--DVRMVV  252 (536)
Q Consensus       180 ~~~~~~v~~~~~s~-----~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~--~~~~l~  252 (536)
                      .+|...+..++|..     .-..++......+-++....|+.+++.....+     ..|+...+.++|+-..  ...++|
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D-----~d~~Esfytcsw~yd~~~~~p~la  109 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYAD-----EDHDESFYTCSWSYDSNTGNPFLA  109 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccC-----CCCCcceEEEEEEecCCCCCeeEE
Confidence            44556666666652     22334443333444444444444444332222     2467788899998632  246899


Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee----cCCCcee
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY----SSEYAVF  328 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~----~~~~~i~  328 (536)
                      +|+.-|.|+|.|+..    ......+.+|...|+.|.|+|+.++++++||.|.+|++|++++..+..++    +|...|.
T Consensus       110 ~~G~~GvIrVid~~~----~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  110 AGGYLGVIRVIDVVS----GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL  185 (385)
T ss_pred             eecceeEEEEEecch----hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence            999999999999998    78889999999999999999999999999999999999999999998887    4889999


Q ss_pred             EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE-EEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI-MATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~-l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      ++.|+.++ ..|++++.|.+|.+|++...+....+..      ++.|+|++... |-+    -.+.+.|.          
T Consensus       186 SvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~~t~~pfpt----~~~~fp~f----------  244 (385)
T KOG1034|consen  186 SVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPNKTTRPFPT----PKTHFPDF----------  244 (385)
T ss_pred             EEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhh------hcccCCCCccCcCCc----cccccccc----------
Confidence            99999999 7999999999999999986654333331      25566644210 000    01111111          


Q ss_pred             ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC-Cc----------ceEEeccCCCCceeeeeEEEEcCCCCEE
Q 009380          408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-EN----------TSMIHHNNQTGRWISSFRAIWGWDDSCV  476 (536)
Q Consensus       408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~s~~g~~l  476 (536)
                      .....|...|.|+.|-  |+++++-+.++.|..|..-.. +.          ...+.+..-....+..++.+|.+-++.|
T Consensus       245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence            1334588999999996  788999999999999987211 11          1222222233334556677888889999


Q ss_pred             EEEcCCCcEEEEcCCccccc--eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          477 FIGNMTRTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +.|+..|.|.+||+...++.  .++..+......-..+|+- |+..|+..++||.|.-||.
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence            99999999999999887653  2222222222223456665 6799999999999999984

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.4e-22  Score=194.64  Aligned_cols=288  Identities=14%  Similarity=0.159  Sum_probs=219.1

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..+.++|.+.|.+|...|  .|.+|++|+.||+|+||.+.+    +.++..+.- .+.|.||+|+|.+...+++++.+..
T Consensus       393 ~lvyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~T----gRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~  465 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIAT----GRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC  465 (733)
T ss_pred             eeeEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeec----ceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence            356789999999999999  999999999999999999998    788888764 4589999999987555665555555


Q ss_pred             EEEEECCCC--------------------------------------eEEEeecCCCceeEEEecCCCCCEEEEEECC--
Q 009380          307 IRLMDAEKE--------------------------------------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--  346 (536)
Q Consensus       307 I~vwd~~~~--------------------------------------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--  346 (536)
                      +.|.+..-|                                      .......|...|..+.|+..| .+|++...+  
T Consensus       466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~  544 (733)
T KOG0650|consen  466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATVMPDSG  544 (733)
T ss_pred             eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEeccCCC
Confidence            555443111                                      012445677889999999999 788876653  


Q ss_pred             -CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC
Q 009380          347 -GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS  425 (536)
Q Consensus       347 -g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~  425 (536)
                       ..|.|+++.......-|....+.|.++.|+|..+ +|++++ ...|+|||+...    ..+..+......|.+++.+|.
T Consensus       545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~  618 (733)
T KOG0650|consen  545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPN  618 (733)
T ss_pred             cceEEEEecccccccCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCC
Confidence             4799999988777667766778899999999875 555555 467999999873    244445566788999999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCC-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc------c---cc
Q 009380          426 GSSLATTSFDDTIGIWSGVNF-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ------R---RS  495 (536)
Q Consensus       426 g~~l~t~s~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~------~---~~  495 (536)
                      |..|++++.|+.+..||+.-. ++..++.++....+     .++|++.-.+|++|+.||.+.||.-.-      .   -+
T Consensus       619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr-----~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVR-----SVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhh-----hhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            999999999999999999744 45555554433222     266888888999999999999985321      1   13


Q ss_pred             ceeccCCcee--eeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          496 VATLQSPYIS--AIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       496 ~~~l~~~~~~--~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      +..|.+|...  .-.....|||.. .||.+++.||.|++|.
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLFT  733 (733)
T ss_pred             eeeccCceeecccceEeecccCCC-ceEEecCCCceEEeeC
Confidence            5666776544  122467799965 8999999999999993

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=9.5e-22  Score=176.38  Aligned_cols=261  Identities=14%  Similarity=0.159  Sum_probs=196.3

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEECCCe
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGL  306 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~  306 (536)
                      .+..+|.+-|.++.|.+  .|+.+|+|+.|++|+|||.........+....+.|.+.|..|.|.+ .-++.+++|++|++
T Consensus         7 pi~s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen    7 PIDSGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             ccccCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            34577889999999999  9999999999999999998765555678888999999999999964 33389999999999


Q ss_pred             EEEEECCCC----------eEEEeecCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccc------eeEe-----
Q 009380          307 IRLMDAEKE----------VFDLVYSSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSA------TEWL-----  364 (536)
Q Consensus       307 I~vwd~~~~----------~~~~~~~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~------~~~~-----  364 (536)
                      +.||.-...          ....+......|++++|.|... -.+++++.||.|+||+.-..-.+      ..++     
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            999975311          1233445678999999998642 46888999999999987654322      2222     


Q ss_pred             --ccCCCeEEEEEecCC--CCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC----CCeEEE
Q 009380          365 --LHEARINTIDFNPRN--PNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS----GSSLAT  431 (536)
Q Consensus       365 --~h~~~i~~i~~~p~~--~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~----g~~l~t  431 (536)
                        .+.....|+.|+|..  +.+||.|+.+     +.++||.......+-..+-.+.+|..+|+.|+|.|+    ..+|++
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence              356678899999742  3478888865     479999887765444455556689999999999994    358999


Q ss_pred             EeCCCcEEEEeCCCCC-----------------cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          432 TSFDDTIGIWSGVNFE-----------------NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       432 ~s~dg~I~iwd~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ++.|| |+||.+....                 ++..+.....+  .-...++.|+-.|..|.+.+.||.|++|...-.
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H--~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH--NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC--CCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence            99999 9999986311                 11122111111  123445789999999999999999999986543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.5e-22  Score=188.61  Aligned_cols=268  Identities=17%  Similarity=0.183  Sum_probs=198.7

Q ss_pred             EEEEeCC-CcEEEEECCCCCCCCCceEEeccCC-CCEEEEE-EecCCCCEEEEEEC-CCeEEEEECCCCeEEE-eecCCC
Q 009380          251 VVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHL-GPISGIV-TQQYCLSKIFTSCY-DGLIRLMDAEKEVFDL-VYSSEY  325 (536)
Q Consensus       251 l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~-~~~~~~~~l~s~s~-dg~I~vwd~~~~~~~~-~~~~~~  325 (536)
                      +.+++.| .++.+||+.+    +.....+++.. ..-.++. ..+   .+++++.. -..|.+|.+.+..... ..-..+
T Consensus        10 ~sssS~d~~~~~~~dl~T----Gt~~~~ykg~~~a~~~sl~~l~~---~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg   82 (476)
T KOG0646|consen   10 CSSSSFDPINCIVWDLRT----GTSLLQYKGSYLAQAASLTALNN---EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPG   82 (476)
T ss_pred             EeccCCCCcceeEEecCC----CceeEEecCcccccchhhhhhch---hheeeecccCccccccccCchhhhhhhccccc
Confidence            3344444 4599999998    56666666542 1111222 222   46666544 4578999988754333 334568


Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC---
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT---  402 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~---  402 (536)
                      +|.+++-+|.| .+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+.|+ .+|+|||.||.|.+|++-..-.   
T Consensus        83 ~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   83 PVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccccc
Confidence            89999999998 788888899999999999999999999999999999999987 6999999999999998754211   


Q ss_pred             --CCCCcceeecccCceeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEE
Q 009380          403 --DKPEPMKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI  478 (536)
Q Consensus       403 --~~~~~~~~~~~~~~v~~l~~sp~--g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  478 (536)
                        .......+..|.-+|+.+...+-  ..+|+|+|.|.++++||+..+..+.++....      ...+++.+|-+..+++
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yi  234 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYI  234 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEe
Confidence              11233445589999999998874  3589999999999999999998887775433      2223667999999999


Q ss_pred             EcCCCcEEEEcCCccc----------------cceeccCCce-eeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          479 GNMTRTVEVISPAQRR----------------SVATLQSPYI-SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       479 gs~dg~I~v~d~~~~~----------------~~~~l~~~~~-~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      |+.+|.|.+.++....                .+..+.+|.. +.+ ++++.+- |+..|++|+.||+|+|||+
T Consensus       235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I-TcLais~-DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI-TCLAIST-DGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce-eEEEEec-CccEEEeeCCCCCEEEEec
Confidence            9999999988764332                2344455554 233 2344443 7899999999999999997

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.8e-24  Score=212.18  Aligned_cols=234  Identities=19%  Similarity=0.254  Sum_probs=198.8

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCC
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLG  258 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg  258 (536)
                      ..|...|.++..-..++.+.          +++.+-.+.||..... ...-+.+|...|-++.|++  +..+|++|+.+|
T Consensus        25 ~~hsaav~~lk~~~s~r~~~----------~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~--~E~Llaagsasg   92 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSRSLV----------TGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT--SERLLAAGSASG   92 (825)
T ss_pred             hhhhhhhceeeeeccceeec----------cCCCceeeccccccCCchhheeeccCCcceeeecCc--chhhhcccccCC
Confidence            45667777777766666666          4466678889987322 2233589999999999999  889999999999


Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNV  337 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~  337 (536)
                      +|++||+..    ...++++.+|...+..+.|+|.+ .++++++.|+.+++||++...+... .+|...+.++.|+|+| 
T Consensus        93 tiK~wDlee----Ak~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G-  166 (825)
T KOG0267|consen   93 TIKVWDLEE----AKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG-  166 (825)
T ss_pred             ceeeeehhh----hhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC-
Confidence            999999997    78899999999999999999999 9999999999999999995544444 4578889999999999 


Q ss_pred             CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCce
Q 009380          338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV  417 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v  417 (536)
                      .+++.|+.|..++|||+..|+.+..|..|...+..+.|+|.. .++++|+.|++|++||+++..    .+.........|
T Consensus       167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe----~I~s~~~~~~~v  241 (825)
T KOG0267|consen  167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE----VISSGKPETDGV  241 (825)
T ss_pred             ceeeccCCcceeeeecccccccccccccccccccccccCchh-hhhccCCCCceeeeeccceeE----EeeccCCccCCc
Confidence            899999999999999999999999999999999999999966 799999999999999999742    333333457899


Q ss_pred             eEEEEccCCCeEEEEeCCC
Q 009380          418 HSAYFSPSGSSLATTSFDD  436 (536)
Q Consensus       418 ~~l~~sp~g~~l~t~s~dg  436 (536)
                      .+..|+|++..+++|....
T Consensus       242 ~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  242 RSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeecCCceeeecCchhh
Confidence            9999999999888887654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=6.1e-24  Score=209.82  Aligned_cols=245  Identities=20%  Similarity=0.282  Sum_probs=208.3

Q ss_pred             eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC
Q 009380          216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL  295 (536)
Q Consensus       216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  295 (536)
                      .+++|+.     +..-.|...|.++..-.  .++.+++|+.|..+.+|.+..    ...+..+.+|..+|.++.|++.. 
T Consensus        15 ~Lr~~~~-----~~~~~hsaav~~lk~~~--s~r~~~~Gg~~~k~~L~~i~k----p~~i~S~~~hespIeSl~f~~~E-   82 (825)
T KOG0267|consen   15 KLRVWDT-----REFVAHSAAVGCLKIRK--SSRSLVTGGEDEKVNLWAIGK----PNAITSLTGHESPIESLTFDTSE-   82 (825)
T ss_pred             ccccccc-----hhhhhhhhhhceeeeec--cceeeccCCCceeeccccccC----CchhheeeccCCcceeeecCcch-
Confidence            4556664     23467888899998855  789999999999999999987    56677799999999999999997 


Q ss_pred             CEEEEEECCCeEEEEECCCCe-EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEV-FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTID  374 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~-~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~  374 (536)
                      .+|++|+.+|+|++||++..+ +..+++|...+.+++|+|-+ .+++.|+.|+.+.+||++...+.+.+.+|...|..+.
T Consensus        83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~  161 (825)
T KOG0267|consen   83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR  161 (825)
T ss_pred             hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence            899999999999999999875 45667899999999999998 7889999999999999999999999999999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380          375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~  454 (536)
                      |+|+| .+++.|+.|.+++|||+..++    ....+..|...+.++.|+|..-++++|+.|++|++||+++++.+.....
T Consensus       162 lsP~G-r~v~~g~ed~tvki~d~~agk----~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~  236 (825)
T KOG0267|consen  162 LSPDG-RWVASGGEDNTVKIWDLTAGK----LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP  236 (825)
T ss_pred             ecCCC-ceeeccCCcceeeeecccccc----cccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence            99988 799999999999999999864    4445567999999999999999999999999999999987765554432


Q ss_pred             cCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          455 NNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                      .   .  ..+-+..|++++..+++|....
T Consensus       237 ~---~--~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  237 E---T--DGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             c---c--CCceeeeecCCceeeecCchhh
Confidence            2   1  1222367999999999886553

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=8e-22  Score=176.87  Aligned_cols=259  Identities=14%  Similarity=0.185  Sum_probs=198.3

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCceEEEEEEecCCcc
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVR  249 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~  249 (536)
                      ..-+-.+|.|-|+++.|.+.|+.++++          +.|+.+.+||...+     .....+.|.+.|..|.|.+.+-|+
T Consensus         5 ~~pi~s~h~DlihdVs~D~~GRRmAtC----------SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFYGRRMATC----------SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ   74 (361)
T ss_pred             ccccccCCcceeeeeeecccCceeeec----------cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc
Confidence            344567899999999999999999955          78889999996332     234568899999999999888999


Q ss_pred             EEEEEeCCCcEEEEECCCCCC-----CCCceEEeccCCCCEEEEEEecCC-CCEEEEEECCCeEEEEECCCCe-------
Q 009380          250 MVVAGSKLGNITFWNLDSQQD-----EDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCYDGLIRLMDAEKEV-------  316 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~dg~I~vwd~~~~~-------  316 (536)
                      .+|+++.|+++.||.-.....     ......++......|++|.|.|.. +-.|++++.||.||||+.-...       
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence            999999999999998642211     234456777788999999999963 2678999999999999875421       


Q ss_pred             ---EE----EeecCCCceeEEEecCCC--CCEEEEEECC-----CeEEEEECCCCc----cceeEeccCCCeEEEEEecC
Q 009380          317 ---FD----LVYSSEYAVFSLSQQPNN--VNTLYFGEGQ-----GGLNIWDVRSRK----SATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       317 ---~~----~~~~~~~~i~~l~~~~~~--~~~l~~g~~d-----g~i~i~d~~~~~----~~~~~~~h~~~i~~i~~~p~  378 (536)
                         +.    ..-.+..+..|+.|+|..  ..+|++|+.+     +.+.||....+.    .+.++..|..+|++|+|.|.
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence               11    111356788899998742  3578888766     578888765432    35667799999999999995


Q ss_pred             CC---CEEEEEeCCCcEEEEeCCCCC----------CC-----CC-CcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380          379 NP---NIMATSSTDGTACIWDLRSMA----------TD-----KP-EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG  439 (536)
Q Consensus       379 ~~---~~l~s~s~dg~i~iwdl~~~~----------~~-----~~-~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~  439 (536)
                      -+   ++||+++.|| |+||.+....          ..     .. .+..+..|++.|+.+.|+-.|..|++.+.||.|+
T Consensus       235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR  313 (361)
T KOG2445|consen  235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR  313 (361)
T ss_pred             cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence            32   4899999999 9999988421          00     00 1112336999999999999999999999999999


Q ss_pred             EEeCC
Q 009380          440 IWSGV  444 (536)
Q Consensus       440 iwd~~  444 (536)
                      +|...
T Consensus       314 LWkan  318 (361)
T KOG2445|consen  314 LWKAN  318 (361)
T ss_pred             ehhhh
Confidence            99753

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=6.6e-22  Score=191.63  Aligned_cols=296  Identities=15%  Similarity=0.188  Sum_probs=224.6

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      .-..++||.+.|.++...+.|..|+          +++.||+|++|.+........-...+.|.||+|+|..+-.+||++
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wla----------sGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA  461 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLA----------SGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA  461 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceee----------ecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE
Confidence            4467899999999999999999999          568999999999866544444445789999999996555666666


Q ss_pred             eCCCcEEEEECCCC---------------------------------CCCCCceEEeccCCCCEEEEEEecCCCCEEEEE
Q 009380          255 SKLGNITFWNLDSQ---------------------------------QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS  301 (536)
Q Consensus       255 ~~dg~v~iwd~~~~---------------------------------~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~  301 (536)
                      -... +.|-+..-+                                 ......+.....|...|..+.|+..| .||++.
T Consensus       462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlatV  539 (733)
T KOG0650|consen  462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLATV  539 (733)
T ss_pred             ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEEe
Confidence            5433 444443211                                 00112234555688999999999999 999998


Q ss_pred             ECC---CeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEec
Q 009380          302 CYD---GLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP  377 (536)
Q Consensus       302 s~d---g~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p  377 (536)
                      .-+   ..|.|+++.+...+.-+ ...+.|.++.|+|.. .+|++++.. .|+|||+..+..+..+......|.+++.+|
T Consensus       540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~-p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp  617 (733)
T KOG0650|consen  540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSK-PYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHP  617 (733)
T ss_pred             ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCC-ceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence            764   57889999887665555 567889999999998 567777765 899999999888888887888999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC----CcceEEe
Q 009380          378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF----ENTSMIH  453 (536)
Q Consensus       378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~----~~~~~~~  453 (536)
                      .| .-|+.|+.|+.++.||+.-..   .....+..|...+++++|++.-.+|++|+.||++.||--.-.    +....+.
T Consensus       618 ~G-Dnli~gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVP  693 (733)
T KOG0650|consen  618 NG-DNLILGSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVP  693 (733)
T ss_pred             CC-CeEEEecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEe
Confidence            77 467788899999999998743   123344479999999999999999999999999999863311    1111111


Q ss_pred             ccCCCC----ceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          454 HNNQTG----RWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       454 ~~~~~~----~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      .....+    ..+.++.+.|+|...+|++++.||.|++|
T Consensus       694 lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  694 LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            111112    22446778899999999999999999998

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-20  Score=186.01  Aligned_cols=283  Identities=17%  Similarity=0.212  Sum_probs=211.0

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ..+..|.++||+.  +.+.||.+-.+|.|-||++...   ......+.++ ...|.+++|.+.  ..|++.+.+|.|.-|
T Consensus        23 ~~Ps~I~slA~s~--kS~~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~drsIE~L~W~e~--~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   23 YKPSEIVSLAYSH--KSNQLAVSRTDGNIEIWNLSNN---WFLEPVIHGPEDRSIESLAWAEG--GRLFSSGLSGSITEW   95 (691)
T ss_pred             eeccceEEEEEec--cCCceeeeccCCcEEEEccCCC---ceeeEEEecCCCCceeeEEEccC--CeEEeecCCceEEEE
Confidence            3467899999999  8889999999999999999974   3444445444 467999999954  689999999999999


Q ss_pred             ECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--EeccCCCeEEEEEecCCCCEEEEEe
Q 009380          311 DAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--WLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       311 d~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      |+.+.+....+. ..+.|++++.+|.+ ..+++|+.||.+..++...++..+.  +....+.|.+++|+|++ ..+++|+
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~i~~Gs  173 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TKIAGGS  173 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-cEEEecc
Confidence            999987766554 56899999999998 8999999999888888877765433  33456899999999988 6799999


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeec----ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLS----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~----~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      .||.|++||+.++.........+.+    ...-|+++.|-.++ .|++|..-|+|.+||...+.....+.....     .
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a-----d  247 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDA-----D  247 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhc-----c
Confidence            9999999999986521100001111    23357788887555 599999999999999998887766643222     2


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc---ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS---VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~---~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      +++++-.+++.+|++++.|+.|.-|...+...   ......+|...+.+ ++..   +..|++|+.|+.|.+=
T Consensus       248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs-~av~---~~~l~sgG~d~~l~i~  316 (691)
T KOG2048|consen  248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS-MAVI---ENALISGGRDFTLAIC  316 (691)
T ss_pred             eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee-eeee---cceEEecceeeEEEEc
Confidence            33455678889999999999998888776633   11111222223322 3333   2589999999988763

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-21  Score=185.65  Aligned_cols=284  Identities=12%  Similarity=0.181  Sum_probs=210.6

Q ss_pred             ceEEeccccc---CccccccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380          215 SCVDIGSLTL---KPENIARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT  290 (536)
Q Consensus       215 g~v~lw~~~~---~~~~~~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  290 (536)
                      ..++|||+..   .+..+.+..+-.|.++.|..  .. -.+++.+.|..|++|.-......-..+....  ...-.|++.
T Consensus        12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~--~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~--gd~~~Cv~~   87 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQR--RNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT--GDNAFCVAC   87 (673)
T ss_pred             CceEEeecccccCccccccCCCCCcceeeeccc--cceEEEeecCCceeEEEecccCCCCccceeeccc--cchHHHHhh
Confidence            3788998743   33333333355699999987  33 2233345677899998664321112222222  234456665


Q ss_pred             ecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc-CC
Q 009380          291 QQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-EA  368 (536)
Q Consensus       291 ~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~  368 (536)
                      .... -++++|+..+.|+|||++...+. .+.+|...|+++.++..+ .+|++++..|.|.|..+.++.....|... ..
T Consensus        88 ~s~S-~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq  165 (673)
T KOG4378|consen   88 ASQS-LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ  165 (673)
T ss_pred             hhcc-eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCC
Confidence            5555 89999999999999999965544 445788999999999887 89999999999999999999887777733 45


Q ss_pred             CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC
Q 009380          369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      .|.-+.|+|....+|.+++.+|.|.+||+....   +.......|..+...|+|+| +..+|++.+.|..|.+||.+...
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~  242 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA  242 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCC---cccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence            567899999888899999999999999998743   22233347999999999999 56788999999999999998776


Q ss_pred             cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc-ccceeccCCceeeeeeeEeecC
Q 009380          448 NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~-~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      ....+....+    ++.  ++|+++|.+|++|+..|.|..||++.. .++..+..|...+.  +++|.|
T Consensus       243 s~~~l~y~~P----lst--vaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt--~vafq~  303 (673)
T KOG4378|consen  243 STDRLTYSHP----LST--VAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVT--RVAFQP  303 (673)
T ss_pred             ccceeeecCC----cce--eeecCCceEEEeecCCceEEEEecccCCCCceEeeeccccee--EEEeee
Confidence            6666643332    333  779999999999999999999999765 45666666655544  455554

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=2.3e-21  Score=189.32  Aligned_cols=271  Identities=15%  Similarity=0.153  Sum_probs=188.4

Q ss_pred             cccccceEEeccccc---C--cc--ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC
Q 009380          210 KIEVGSCVDIGSLTL---K--PE--NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL  282 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~---~--~~--~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~  282 (536)
                      ....+|.|.|+|...   .  ..  .....|.+.|..+.|.|  ....|++++.|.++++||+....  ......+.+|.
T Consensus        69 vadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap--ge~~lVsasGDsT~r~Wdvk~s~--l~G~~~~~GH~  144 (720)
T KOG0321|consen   69 VADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP--GESLLVSASGDSTIRPWDVKTSR--LVGGRLNLGHT  144 (720)
T ss_pred             EecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC--CceeEEEccCCceeeeeeeccce--eecceeecccc
Confidence            456778899998632   1  11  23457999999999999  77899999999999999999743  12223589999


Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----------------------------EEeecCCCc----eeEE
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----------------------------DLVYSSEYA----VFSL  330 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----------------------------~~~~~~~~~----i~~l  330 (536)
                      +.|.+++|.|.++..|++|+.||.|.|||++-...                            .....+...    |+.+
T Consensus       145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv  224 (720)
T KOG0321|consen  145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV  224 (720)
T ss_pred             cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence            99999999999999999999999999999863210                            000112223    4444


Q ss_pred             EecCCCCCEEEEEEC-CCeEEEEECCCCccceeE--------ecc---CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009380          331 SQQPNNVNTLYFGEG-QGGLNIWDVRSRKSATEW--------LLH---EARINTIDFNPRNPNIMATSSTDGTACIWDLR  398 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~--------~~h---~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~  398 (536)
                      .| .|. ..|++++. |+.|++||++........        ..|   .-.+.++.....|.+++|+|. |+.|++|+++
T Consensus       225 ~f-kDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~  301 (720)
T KOG0321|consen  225 LF-KDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMR  301 (720)
T ss_pred             EE-ecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEecc
Confidence            44 444 67887776 999999999976543322        223   234667777776765555555 9999999999


Q ss_pred             CCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-E
Q 009380          399 SMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-C  475 (536)
Q Consensus       399 ~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~  475 (536)
                      .....  ....+.++..  .-..-..+|++.++++|+.|...++|.+.+.+....+    ..++.+.++.++|.|... -
T Consensus       302 s~s~s--P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~----l~Ght~eVt~V~w~pS~~t~  375 (720)
T KOG0321|consen  302 SLSIS--PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL----LLGHTREVTTVRWLPSATTP  375 (720)
T ss_pred             ccCcC--chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh----hhCcceEEEEEeeccccCCC
Confidence            86421  1112222221  1122346889999999999999999999876554433    233344555577876532 3


Q ss_pred             EEEEcCCCcEEEEcCCcc
Q 009380          476 VFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~~~  493 (536)
                      +++++.|..++||++..+
T Consensus       376 v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  376 VATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             ceeeccCcceEEEeccCc
Confidence            666699999999999654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.4e-22  Score=210.36  Aligned_cols=286  Identities=18%  Similarity=0.261  Sum_probs=213.5

Q ss_pred             eEEEEEEecCCcc-EEEEE----------eCCCcEEEEECCCCCCCC--CceEEeccCCCCEEEEEEecCCCC---EEEE
Q 009380          237 ITQMKFLPCSDVR-MVVAG----------SKLGNITFWNLDSQQDED--NGIYLFRTHLGPISGIVTQQYCLS---KIFT  300 (536)
Q Consensus       237 I~~v~~~p~~~~~-~l~tg----------~~dg~v~iwd~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~---~l~s  300 (536)
                      --.++|+|  .+. ++++|          +.+.++-||.++......  +.+..+. .......++|.+.+..   +|+.
T Consensus         9 ta~~awSp--~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaG   85 (1049)
T KOG0307|consen    9 TATFAWSP--ASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAG   85 (1049)
T ss_pred             cceEEecC--CCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeec
Confidence            34578888  554 56655          334566677665432211  2222222 2345789999988744   4899


Q ss_pred             EECCCeEEEEECCCC---e----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeE
Q 009380          301 SCYDGLIRLMDAEKE---V----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARIN  371 (536)
Q Consensus       301 ~s~dg~I~vwd~~~~---~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~  371 (536)
                      |..||.|.+||...-   .    +.....|.+.|..+.|++..+++|++|+.||.|.|||+...+.-.+..  ...+.|.
T Consensus        86 G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~  165 (1049)
T KOG0307|consen   86 GLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK  165 (1049)
T ss_pred             cccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence            999999999998652   1    223346899999999999998999999999999999999866544442  3567899


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc--CceeEEEEccCC-CeEEEEeCCC---cEEEEeCCC
Q 009380          372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK--RAVHSAYFSPSG-SSLATTSFDD---TIGIWSGVN  445 (536)
Q Consensus       372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~--~~v~~l~~sp~g-~~l~t~s~dg---~I~iwd~~~  445 (536)
                      +++|+..-.++|++++.+|.+.|||+|..+    .++.+..|.  ..+..+.|+|+. ..|++++.|.   .|.+||++.
T Consensus       166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~  241 (1049)
T KOG0307|consen  166 CLSWNRKVSHILASGSPSGRAVIWDLRKKK----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF  241 (1049)
T ss_pred             EeccchhhhHHhhccCCCCCceeccccCCC----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence            999999888899999999999999999853    455554443  457899999965 5677777665   499999986


Q ss_pred             CC-cceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          446 FE-NTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       446 ~~-~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      -. ++.++.++ .    -.++.+.|++.+ .+|++++.|+.|.+|+.++++.+..+..  ....+..+.|.|.+...++.
T Consensus       242 assP~k~~~~H-~----~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~  314 (1049)
T KOG0307|consen  242 ASSPLKILEGH-Q----RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAA  314 (1049)
T ss_pred             cCCchhhhccc-c----cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhh
Confidence            43 34444221 2    234557898866 8899999999999999999999999986  33455689999998889999


Q ss_pred             EccCCeEEEEecC
Q 009380          524 ATGGGQVYVWTSD  536 (536)
Q Consensus       524 gs~Dg~v~iW~~d  536 (536)
                      ++-||.|-||.+.
T Consensus       315 asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  315 ASFDGKISIYSLQ  327 (1049)
T ss_pred             heeccceeeeeee
Confidence            9999999999863

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1e-20  Score=170.15  Aligned_cols=283  Identities=14%  Similarity=0.167  Sum_probs=213.4

Q ss_pred             eeeeecCCCCcccccccccccccccccccceEEecccc-cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEE
Q 009380          186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT-LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWN  264 (536)
Q Consensus       186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~-~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd  264 (536)
                      -.||+|++.|.+||          .+-.+|.|.+||+. .....++..|-.+|++++||+  +|+.|++++.|..|.+||
T Consensus        26 a~~~~Fs~~G~~lA----------vGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~--dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   26 AECCQFSRWGDYLA----------VGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR--DGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             cceEEeccCcceee----------eeccCCcEEEEEccccchhhhhhccccceeEEEecC--CCCEeeeecCCceeEEEe
Confidence            57999999999999          45788999999984 455677889999999999999  999999999999999999


Q ss_pred             CCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CC----CceeEEEecCCCCCE
Q 009380          265 LDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SE----YAVFSLSQQPNNVNT  339 (536)
Q Consensus       265 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~----~~i~~l~~~~~~~~~  339 (536)
                      +..    +.+++.+. ...+|+.+.|+|...+.++++-.+..-.+-++...+...+-. .+    ....+..|.+.| ++
T Consensus        94 l~~----gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~y  167 (405)
T KOG1273|consen   94 LLK----GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KY  167 (405)
T ss_pred             ccC----CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CE
Confidence            998    56666665 568999999999876777777666666666666543322221 11    122233577777 89


Q ss_pred             EEEEECCCeEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC----CCCc-ceee--
Q 009380          340 LYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD----KPEP-MKVL--  411 (536)
Q Consensus       340 l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~----~~~~-~~~~--  411 (536)
                      +++|+..|.+.++|..+.+++..++... ..|..|.++..| .+|+.-+.|+.|+.|+++.....    ...+ .++.  
T Consensus       168 IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv  246 (405)
T KOG1273|consen  168 IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV  246 (405)
T ss_pred             EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence            9999999999999999999988887555 789999999877 79999999999999998843211    1111 1111  


Q ss_pred             cccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      -.+..-.+++|+.+|.|++.++. -..++||....+..++.+....  |.  ..+.+.|+|-...+++- ..|.|+||..
T Consensus       247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~k--gE--~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTK--GE--ELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCc--hh--heeecccccceeeeeec-cCCceEEEEe
Confidence            13445578899999999988874 3459999998888877764322  11  22347788887777766 6789999976


Q ss_pred             Cc
Q 009380          491 AQ  492 (536)
Q Consensus       491 ~~  492 (536)
                      ..
T Consensus       322 ~~  323 (405)
T KOG1273|consen  322 VQ  323 (405)
T ss_pred             ec
Confidence            43

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=1.7e-20  Score=167.37  Aligned_cols=293  Identities=14%  Similarity=0.153  Sum_probs=214.8

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----------------cccccccCCceE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----------------ENIARIMPGRIT  238 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----------------~~~~~~~~~~I~  238 (536)
                      .+.+-+.|...|..+++.+....+.         ++++.||.+.+||+....                .....+|.-.|.
T Consensus        35 d~d~~r~HgGsvNsL~id~tegrym---------lSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is  105 (397)
T KOG4283|consen   35 DKDFVRPHGGSVNSLQIDLTEGRYM---------LSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS  105 (397)
T ss_pred             CcceeccCCCccceeeeccccceEE---------eecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeee
Confidence            3455677999999999988765544         367999999999984322                012234567899


Q ss_pred             EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC--CEEEEEECCCeEEEEECCCCe
Q 009380          239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL--SKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      ++.|-|. |..++.+++.|.+++|||..+    .+....|. ..+.|.+-+++|-..  .++++|..|-.|++-|+.+|.
T Consensus       106 s~~WyP~-DtGmFtssSFDhtlKVWDtnT----lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs  179 (397)
T KOG4283|consen  106 SAIWYPI-DTGMFTSSSFDHTLKVWDTNT----LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS  179 (397)
T ss_pred             eeEEeee-cCceeecccccceEEEeeccc----ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence            9999998 667899999999999999998    44444443 346677778877431  578888889999999999998


Q ss_pred             EEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-cccee--------------EeccCCCeEEEEEecCCC
Q 009380          317 FDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATE--------------WLLHEARINTIDFNPRNP  380 (536)
Q Consensus       317 ~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~--------------~~~h~~~i~~i~~~p~~~  380 (536)
                      +.. +.+|.+.|.++.|+|.....|++|+.||.|++||++.. .+...              -..|.+.|++++|..++ 
T Consensus       180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-  258 (397)
T KOG4283|consen  180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-  258 (397)
T ss_pred             ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-
Confidence            765 45799999999999999889999999999999999854 22222              23577889999999988 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc---eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA---VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ  457 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~---v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~  457 (536)
                      .++++++.|..+++|+..++.......... .|...   -..+. +-+...++---.++.+.++++-.+..+..+...  
T Consensus       259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--  334 (397)
T KOG4283|consen  259 RYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--  334 (397)
T ss_pred             hhhhhccCccceEEeecccCcccccccccc-cccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc--
Confidence            689999999999999999876322111111 12111   11122 223444555556688888888888777776433  


Q ss_pred             CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          458 TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       458 ~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                       ..  .+.++.+.|+=+...+|.+|+.|..|..
T Consensus       335 -~k--~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  335 -LK--RINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             -cc--eeeEEeecCchhhhhccccCCccccccc
Confidence             22  2334677888788999999999999976

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.88  E-value=1.3e-20  Score=170.09  Aligned_cols=275  Identities=17%  Similarity=0.178  Sum_probs=200.0

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC----C----CceEEec-cCCCCEEEEEEe-------cCCCCEEEE
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE----D----NGIYLFR-THLGPISGIVTQ-------QYCLSKIFT  300 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~----~----~~~~~~~-~h~~~V~~l~~~-------~~~~~~l~s  300 (536)
                      ...+.|+|  ||.-|++-+.|..+.+|++......    .    .....++ .....|...+|-       |+. +++++
T Consensus        52 ~kgckWSP--DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~  128 (406)
T KOG2919|consen   52 LKGCKWSP--DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAV  128 (406)
T ss_pred             hccceeCC--CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-ceeee
Confidence            34688999  9999999999999999998642110    0    1111111 123557777775       455 88999


Q ss_pred             EECCCeEEEEECCCCeEEEeec---CC---CceeEEEecCCCCCEEEEEECCCeEEEEEC-CCCcc--ceeEe-----cc
Q 009380          301 SCYDGLIRLMDAEKEVFDLVYS---SE---YAVFSLSQQPNNVNTLYFGEGQGGLNIWDV-RSRKS--ATEWL-----LH  366 (536)
Q Consensus       301 ~s~dg~I~vwd~~~~~~~~~~~---~~---~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~-~~~~~--~~~~~-----~h  366 (536)
                      .+.+.-|.+||.-+|+....+.   |.   ....+++|+|+| ..|++|.. ..|++||+ |.|.-  +....     +.
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccc
Confidence            9999999999999998776553   33   355789999999 67776654 59999999 55542  22222     33


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCC
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN  445 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~  445 (536)
                      .+-|.+++|+|.....++.|+....+-||.-...    ..+..+.+|.+.|+.+.|.++|+.|++|. .|..|..||++.
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence            6778999999998889999999888888876653    24455558999999999999999999988 477899999986


Q ss_pred             C-CcceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc-cccceeccCCceeeeeeeEeecCCCCCEEE
Q 009380          446 F-ENTSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLA  522 (536)
Q Consensus       446 ~-~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~-~~~~~~l~~~~~~~~~~~~~~~p~~~~~la  522 (536)
                      . .++..+. |...+...|.   ....|++++|++|+.+|.|++||+.+ +..+..+..+...+  ..+++||.- .++|
T Consensus       283 ~~~pv~~L~rhv~~TNQRI~---FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v--NgvslnP~m-pila  356 (406)
T KOG2919|consen  283 SRDPVYALERHVGDTNQRIL---FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV--NGVSLNPIM-PILA  356 (406)
T ss_pred             ccchhhhhhhhccCccceEE---EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccc--cceecCccc-ceee
Confidence            4 3444443 3333444333   44578999999999999999999988 65555554433322  468889964 7777


Q ss_pred             EEcc
Q 009380          523 GATG  526 (536)
Q Consensus       523 sgs~  526 (536)
                      +++.
T Consensus       357 tssG  360 (406)
T KOG2919|consen  357 TSSG  360 (406)
T ss_pred             eccC
Confidence            7764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=1.7e-20  Score=173.21  Aligned_cols=294  Identities=16%  Similarity=0.184  Sum_probs=217.7

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC--CCCceEEe-ccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD--EDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ...|.+.|+++.|+.  ++.+|++|+.|..+++|+++..-.  ..+++... ..|...|.|++|...+ .+|++|..+++
T Consensus        52 ~~~H~GCiNAlqFS~--N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~  128 (609)
T KOG4227|consen   52 VREHTGCINALQFSH--NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGT  128 (609)
T ss_pred             hhhhccccceeeecc--CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCcce
Confidence            367999999999999  899999999999999999874211  02333322 3466899999999887 99999999999


Q ss_pred             EEEEECCCCeEEEeecCCC---ceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeE--eccCCCeEEEEEecCCC
Q 009380          307 IRLMDAEKEVFDLVYSSEY---AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEW--LLHEARINTIDFNPRNP  380 (536)
Q Consensus       307 I~vwd~~~~~~~~~~~~~~---~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~--~~h~~~i~~i~~~p~~~  380 (536)
                      |...|+++.+.+.++.+..   .|..+..+|.+ ++|++.+.+|.|.+||.+... .+..+  ........++.|+|..+
T Consensus       129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             eEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            9999999999888888765   99999999997 899999999999999999755 33222  23456778999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCccee---ecc---cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc-eEEe
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKV---LSH---KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-SMIH  453 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~---~~~---~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~-~~~~  453 (536)
                      .+|++.+..+-+.+||.+....   .++..   .+.   ...-.++.|+|+|+.|++.-....-.+||+.+..+. ..+.
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~---~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQAR---PVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             eeEEeccccCCCCceeeccccc---hHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence            9999999999999999998532   11111   111   223367899999999988877777788998764433 3333


Q ss_pred             ccCC-CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc-----------------------cceeccCCceeeeee
Q 009380          454 HNNQ-TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR-----------------------SVATLQSPYISAIPC  509 (536)
Q Consensus       454 ~~~~-~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~-----------------------~~~~l~~~~~~~~~~  509 (536)
                      |+.. .....+.-.++|-.| ..+++|+.+-.|++|.+....                       .+..|.+|..  ++.
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS--v~N  361 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS--VPN  361 (609)
T ss_pred             CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc--ccc
Confidence            3331 111222233556544 449999999999999874211                       1233444432  234


Q ss_pred             eEeecCCCCCEEEEEccCCeEEEEe
Q 009380          510 RFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       510 ~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .+.|+|+. .+|++.+....++||.
T Consensus       362 QVRF~~H~-~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  362 QVRFSQHN-NLLVSSGVENSFKLWS  385 (609)
T ss_pred             ceeecCCc-ceEeccchhhheeccc
Confidence            67788865 8899999999999995

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.87  E-value=1.6e-20  Score=167.00  Aligned_cols=295  Identities=17%  Similarity=0.207  Sum_probs=203.9

Q ss_pred             ccceEEecccccCcc----ccccccCCceEEEEEEecCCccEEEEEeCC-------CcEEEEECCCCCCC-----CCceE
Q 009380          213 VGSCVDIGSLTLKPE----NIARIMPGRITQMKFLPCSDVRMVVAGSKL-------GNITFWNLDSQQDE-----DNGIY  276 (536)
Q Consensus       213 ~dg~v~lw~~~~~~~----~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d-------g~v~iwd~~~~~~~-----~~~~~  276 (536)
                      .++.|.+-.++.+..    .++.-|.+.|..++-+|. +..+|+++..+       ..+.||.+......     .+++.
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~-d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~  116 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPF-DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA  116 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCC-CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence            445666666544332    233456889999999996 66777776542       24679998754321     12333


Q ss_pred             Eec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-E-Ee-----ecCCCceeEEEecCC-CCCEEEEEECCC
Q 009380          277 LFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-D-LV-----YSSEYAVFSLSQQPN-NVNTLYFGEGQG  347 (536)
Q Consensus       277 ~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~-~~-----~~~~~~i~~l~~~~~-~~~~l~~g~~dg  347 (536)
                      .+. .+-+.|.|+.|.|++ ..+++.. |..|.+|++..+.. . .+     ..+....++-+|+|. +.+.++ ...|+
T Consensus       117 ~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~  193 (370)
T KOG1007|consen  117 SLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDS  193 (370)
T ss_pred             cCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCC
Confidence            333 455689999999987 7887776 88899999987643 1 11     124566788899983 224444 56678


Q ss_pred             eEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-C
Q 009380          348 GLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-S  425 (536)
Q Consensus       348 ~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~  425 (536)
                      ++..||+|+.+....+. .|...|..+.|+|...++|++|+.||.|+|||.|+.+   ..+..+.+|...|+++.|+| .
T Consensus       194 tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h  270 (370)
T KOG1007|consen  194 TLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH  270 (370)
T ss_pred             cEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc
Confidence            99999999988876665 7999999999999888899999999999999999864   34555668999999999999 5


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee
Q 009380          426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS  505 (536)
Q Consensus       426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~  505 (536)
                      .++|++++.|..|.+|..........+........         .++        .|..=++=-+..| .+.++..|..+
T Consensus       271 dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese---------~e~--------~dseer~kpL~dg-~l~tydehEDS  332 (370)
T KOG1007|consen  271 DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE---------SED--------EDSEERVKPLQDG-QLETYDEHEDS  332 (370)
T ss_pred             ceEEEecCCCceeEEEecccccccccccccccccc---------Ccc--------hhhHHhccccccc-ccccccccccc
Confidence            67899999999999998754332222211110000         000        0111111122333 56677766666


Q ss_pred             eeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          506 AIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       506 ~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      +.  .++|+..+...+|+-+.||++.|=+
T Consensus       333 VY--~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  333 VY--ALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             eE--EEeeccCCCeeEEEeccCceEEeec
Confidence            65  6788888888999999999998744

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.1e-21  Score=181.06  Aligned_cols=231  Identities=15%  Similarity=0.213  Sum_probs=187.1

Q ss_pred             ccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          211 IEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       211 ~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      .+.|..+++|.-..+..   .+.+...+.-.||+...  ...++++|+..+.|+|||+..    ..+.+.+++|...|++
T Consensus        53 ~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s--~S~y~~sgG~~~~Vkiwdl~~----kl~hr~lkdh~stvt~  126 (673)
T KOG4378|consen   53 MAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS--QSLYEISGGQSGCVKIWDLRA----KLIHRFLKDHQSTVTY  126 (673)
T ss_pred             cCCceeEEEecccCCCCccceeeccccchHHHHhhhh--cceeeeccCcCceeeehhhHH----HHHhhhccCCcceeEE
Confidence            34556788887543311   12222333445555554  457999999999999999996    5677788999999999


Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-  364 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-  364 (536)
                      +.++... .+|++++..|.|.|..+.++.....+.+.  ..|.-+.|++....+|.+++.+|.|.+||+....++..+. 
T Consensus       127 v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~  205 (673)
T KOG4378|consen  127 VDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE  205 (673)
T ss_pred             EEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh
Confidence            9999888 99999999999999999998777666654  4566899999987788899999999999998877766654 


Q ss_pred             ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          365 LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       365 ~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      .|..+...|||+|.++.+|++.+.|..|.+||.+..     ..........+...++|.++|.+|+.|...|.|..||++
T Consensus       206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-----~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-----ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             hccCCcCcceecCCccceEEEecccceEEEeecccc-----cccceeeecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            899999999999999999999999999999999963     333444556789999999999999999999999999999


Q ss_pred             CCCcceEEe
Q 009380          445 NFENTSMIH  453 (536)
Q Consensus       445 ~~~~~~~~~  453 (536)
                      ..+......
T Consensus       281 ~~k~Pv~v~  289 (673)
T KOG4378|consen  281 STKAPVAVR  289 (673)
T ss_pred             cCCCCceEe
Confidence            765444443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.86  E-value=8.6e-20  Score=185.11  Aligned_cols=272  Identities=19%  Similarity=0.266  Sum_probs=200.0

Q ss_pred             cccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEE
Q 009380          212 EVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGI  288 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l  288 (536)
                      ..++.+.+|++..... ......+..|+|+.|+|. +..+|+.|..+|+|.+||+.....  ....-.....|..+|+.+
T Consensus       219 ~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  219 EPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             cCCceEEEEecCCCCCceEEEecCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            3445789999865411 112233789999999997 778999999999999999987543  112223445789999999


Q ss_pred             EEecCCC-CEEEEEECCCeEEEEECCCCeE------EE-------eecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380          289 VTQQYCL-SKIFTSCYDGLIRLMDAEKEVF------DL-------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV  354 (536)
Q Consensus       289 ~~~~~~~-~~l~s~s~dg~I~vwd~~~~~~------~~-------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~  354 (536)
                      .|..+-. .-|++++.||.|..|+++.-..      ..       .......++++.|.+..++.+++|+..|.|..-+.
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            9987541 3499999999999998864211      11       11233578999999999999999999999988443


Q ss_pred             CCC--------ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-
Q 009380          355 RSR--------KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-  425 (536)
Q Consensus       355 ~~~--------~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-  425 (536)
                      ...        +.+..+..|.++|+++.++|-+..+|++++ |.+++||.....   ......+..+...|++++|||. 
T Consensus       378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~---~~Pl~~~~~~~~~v~~vaWSptr  453 (555)
T KOG1587|consen  378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI---ASPLLSLDSSPDYVTDVAWSPTR  453 (555)
T ss_pred             cCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC---CCcchhhhhccceeeeeEEcCcC
Confidence            322        123355678999999999999988888888 999999997732   2244555567778999999995 


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCC--cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          426 GSSLATTSFDDTIGIWSGVNFE--NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       426 g~~l~t~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      -..|+++..||.|.|||+....  +.......   ..  ....+.|+++|+.|++|...|.+.+|++...
T Consensus       454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~---~~--~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC---SP--ALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ceEEEEEcCCCceehhhhhccccCCccccccc---cc--ccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            4678888899999999997543  33332211   11  1223668999999999999999999998643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=1.6e-19  Score=167.95  Aligned_cols=291  Identities=15%  Similarity=0.168  Sum_probs=207.7

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC-----CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED-----NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      ..+|+++.|.++ +.+.|++|+.|..|+||.+......+     ..+..+..|...|+++.|+|+| ++|++|+.+|.|.
T Consensus        13 ~~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~   90 (434)
T KOG1009|consen   13 HEPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVF   90 (434)
T ss_pred             CCceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEE
Confidence            578999999994 33499999999999999987654322     2344677899999999999999 9999999999999


Q ss_pred             EEECC--------C------C---eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeE
Q 009380          309 LMDAE--------K------E---VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARIN  371 (536)
Q Consensus       309 vwd~~--------~------~---~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~  371 (536)
                      +|-..        +      .   ......+|...|..++|+|++ +++++++.|..+++||+..|+.+..+..|...+.
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence            99866        2      1   112344688999999999998 8999999999999999999999999999999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----------------CCcceee---cccCceeEEEEccCCCeEEEE
Q 009380          372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----------------PEPMKVL---SHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----------------~~~~~~~---~~~~~v~~l~~sp~g~~l~t~  432 (536)
                      .++|.|.+ +++++-+.|...+++++.......                .....++   ....-...++|+|+|.++++.
T Consensus       170 gvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP  248 (434)
T KOG1009|consen  170 GVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP  248 (434)
T ss_pred             eeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence            99999987 789998888877777665422100                0111111   012234568899999988876


Q ss_pred             eC----CC-----cEEEEeCCCCCcceEEeccCCCCceeeeeEE---------------EE-cCCCCEEEEEcCCCcEEE
Q 009380          433 SF----DD-----TIGIWSGVNFENTSMIHHNNQTGRWISSFRA---------------IW-GWDDSCVFIGNMTRTVEV  487 (536)
Q Consensus       433 s~----dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-s~~g~~l~~gs~dg~I~v  487 (536)
                      ..    .+     +.++|+-...+...  .+....+.....+++               .| -|.+-.+++++. +.|+|
T Consensus       249 ag~~~~g~~~~~n~tYvfsrk~l~rP~--~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyv  325 (434)
T KOG1009|consen  249 AGLFKVGGGVFRNTSYVFSRKDLKRPA--ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYV  325 (434)
T ss_pred             cceeeeCCceeeceeEeeccccccCce--eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEE
Confidence            42    22     23555433221111  111111111111110               01 123334556654 57999


Q ss_pred             EcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      ||.++..++..+.+-|-..+ +.++|++ +|..|+..+.||...+-
T Consensus       326 ydtq~~~P~~~v~nihy~~i-TDiaws~-dg~~l~vSS~DGyCS~v  369 (434)
T KOG1009|consen  326 YDTQTLEPLAVVDNIHYSAI-TDIAWSD-DGSVLLVSSTDGFCSLV  369 (434)
T ss_pred             eccccccceEEEeeeeeeee-cceeecC-CCcEEEEeccCCceEEE
Confidence            99999999988888777776 6899998 67999999999986653

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=2.3e-20  Score=177.17  Aligned_cols=299  Identities=17%  Similarity=0.224  Sum_probs=229.6

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-CCEEEEEECCC
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCYDG  305 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~dg  305 (536)
                      ...+..|.+.|..|.|..  .|..|++|+.|..|.+||....   ...+.-..+|...|....|.|.. ...+++++.||
T Consensus       135 ~~kL~~H~GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~---~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSG---SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             hhcccCCCCccceeeecc--cCceeeccCccceEEeehhhcc---CcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            344678999999999999  9999999999999999999873   23344456899999998998863 25799999999


Q ss_pred             eEEEEECCC-Ce---EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCC---CeEEEEE
Q 009380          306 LIRLMDAEK-EV---FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEA---RINTIDF  375 (536)
Q Consensus       306 ~I~vwd~~~-~~---~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~---~i~~i~~  375 (536)
                      .+++=.+.. +.   ...+..|.++|.-++.-|+.++.|++++.|+.+.-+|++++.+...+.   .+..   ..++|+.
T Consensus       210 qvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  210 QVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV  289 (559)
T ss_pred             ceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence            999987653 32   345667999999999999999999999999999999999876644332   2333   5789999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCCCCCCCC--CCcceee------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          376 NPRNPNIMATSSTDGTACIWDLRSMATDK--PEPMKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       376 ~p~~~~~l~s~s~dg~i~iwdl~~~~~~~--~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      +|.+.+.+++|+.|..+++||.+......  ..+..+.      .....|++++|+.++.-|+++-.|-.|++|.-..+.
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~  369 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD  369 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence            99998999999999999999998754220  0111111      234579999999888778888888889999543211


Q ss_pred             c------------ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380          448 N------------TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       448 ~------------~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      -            .............+... --|.|...|+++|+.-|.|.||+-.+++.+.-+.+.+. ++ .++..||
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV-NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VV-NCLEpHP  446 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGV-NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VV-NCLEPHP  446 (559)
T ss_pred             CCCCCCCcchhhccchhhccccccccccee-eeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eE-eccCCCC
Confidence            1            11111111111112222 12789999999999999999999999999999998766 44 5689999


Q ss_pred             CCCCEEEEEccCCeEEEEe
Q 009380          516 HQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       516 ~~~~~lasgs~Dg~v~iW~  534 (536)
                      .. .+||+.|-|..|+||.
T Consensus       447 ~~-PvLAsSGid~DVKIWT  464 (559)
T KOG1334|consen  447 HL-PVLASSGIDHDVKIWT  464 (559)
T ss_pred             CC-chhhccCCccceeeec
Confidence            87 8999999999999995

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.85  E-value=3.1e-19  Score=161.28  Aligned_cols=274  Identities=13%  Similarity=0.157  Sum_probs=196.9

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCcc-------c-------cccccCCceEEEEEEec-----
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-------N-------IARIMPGRITQMKFLPC-----  245 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-------~-------~~~~~~~~I~~v~~~p~-----  245 (536)
                      -...|.++|||.-+..          ...|.++++|++..+..       .       +.-...+.|+..+|-+.     
T Consensus        51 f~kgckWSPDGSciL~----------~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~q  120 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILS----------LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQ  120 (406)
T ss_pred             hhccceeCCCCceEEe----------ecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCC
Confidence            3456899999987764          46778999998733211       0       11112567888888631     


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCC---CEEEEEEecCCCCEEEEEECCCeEEEEEC-CCCeEEE
Q 009380          246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLG---PISGIVTQQYCLSKIFTSCYDGLIRLMDA-EKEVFDL  319 (536)
Q Consensus       246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~---~V~~l~~~~~~~~~l~s~s~dg~I~vwd~-~~~~~~~  319 (536)
                      .+..++++.+.+.-|.+||.-+    ++....+.  .|..   ...+++|+||| .+|++| +...|+++|+ +.|....
T Consensus       121 P~t~l~a~ssr~~PIh~wdaft----G~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~  194 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFT----GKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCP  194 (406)
T ss_pred             CccceeeeccccCceeeeeccc----cccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCc
Confidence            2678999999999999999998    44444433  3433   34689999999 777765 5788999999 4443221


Q ss_pred             --------eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCC
Q 009380          320 --------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDG  390 (536)
Q Consensus       320 --------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg  390 (536)
                              .++..+-|.+++|+|....++++|+....+-||.-..+.++..+.+|.+.|+.++|+++|. .|.+|+ .|-
T Consensus       195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~d  273 (406)
T KOG2919|consen  195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDD  273 (406)
T ss_pred             chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC-eecccccCCC
Confidence                    2234678899999999988999999999999999888999999999999999999999995 666665 477


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccC-ceeEEE--EccCCCeEEEEeCCCcEEEEeCCC-CCcceEEeccCCCCceeeeeE
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKR-AVHSAY--FSPSGSSLATTSFDDTIGIWSGVN-FENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~-~v~~l~--~sp~g~~l~t~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      .|-.||+|...   ..+..+..|.. .-..|.  ..|++++|++|+.||.|++||+.+ +..+..+.....     ++-.
T Consensus       274 kIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-----~vNg  345 (406)
T KOG2919|consen  274 KILCWDIRYSR---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-----TVNG  345 (406)
T ss_pred             eEEEEeehhcc---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-----cccc
Confidence            89999999853   23444445554 333444  457899999999999999999987 443444432221     1222


Q ss_pred             EEEcCCCCEEEEEcCCC
Q 009380          467 AIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg  483 (536)
                      ++++|--.++++++..+
T Consensus       346 vslnP~mpilatssGqr  362 (406)
T KOG2919|consen  346 VSLNPIMPILATSSGQR  362 (406)
T ss_pred             eecCcccceeeeccCce
Confidence            56778777777777654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.3e-17  Score=169.52  Aligned_cols=330  Identities=20%  Similarity=0.274  Sum_probs=244.2

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc--cccccccC-CceEEEEE-EecCCcc-EEE
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIMP-GRITQMKF-LPCSDVR-MVV  252 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~~-~~I~~v~~-~p~~~~~-~l~  252 (536)
                      .+.+|.+.+..+.+.+.+..+...          +.++.+.+|+.....  ......+. ..+..+.+ ++  ++. +++
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~----------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  127 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSG----------SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP--DGNSILL  127 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEe----------cCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC--CcceEEe
Confidence            567899999999999999988844          478899999986553  22233323 37888888 56  776 555


Q ss_pred             EEeC-CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CCeEEEEECCCCeEE-EeecCCCceeE
Q 009380          253 AGSK-LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEKEVFD-LVYSSEYAVFS  329 (536)
Q Consensus       253 tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~~~~~-~~~~~~~~i~~  329 (536)
                      ..+. |+.+.+|+....   ......+..|...|..+.|+|++ ..+++++. |+.+++|++..+... ....|...|.+
T Consensus       128 ~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  203 (466)
T COG2319         128 ASSSLDGTVKLWDLSTP---GKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS  203 (466)
T ss_pred             ccCCCCccEEEEEecCC---CeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence            5444 899999999851   36778889999999999999998 78888885 999999999975544 44457899999


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccce-eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT-EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM  408 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~  408 (536)
                      ++|+|++...+++++.|+.|.+||...+..+. .+..|.... ...|+|++ .++++++.|+.+++||++....   ...
T Consensus       204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~---~~~  278 (466)
T COG2319         204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS---LLR  278 (466)
T ss_pred             EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc---EEE
Confidence            99998874255555899999999998777777 677888775 44899987 7888999999999999997542   122


Q ss_pred             eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE-cCCCcEEE
Q 009380          409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG-NMTRTVEV  487 (536)
Q Consensus       409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-s~dg~I~v  487 (536)
                      ....|...+.++.|+|++..+++++.|+.+.+||........... .......+..  +.|.+++..++.+ ..|+.+.+
T Consensus       279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~  355 (466)
T COG2319         279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSS--LSFSPDGSLLVSGGSDDGTIRL  355 (466)
T ss_pred             EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEE--EEECCCCCEEEEeecCCCcEEe
Confidence            225788999999999988888889999889999887776555543 1111112333  4453443555555 67889999


Q ss_pred             EcCCccccceeccCCceeeeeeeEeecCCCCCEEEE-EccCCeEEEEecC
Q 009380          488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGGQVYVWTSD  536 (536)
Q Consensus       488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las-gs~Dg~v~iW~~d  536 (536)
                      |+...............   ...+.+.+ + ..+.+ +..++.+.+|+..
T Consensus       356 ~~~~~~~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~  400 (466)
T COG2319         356 WDLRTGKPLKTLEGHSN---VLSVSFSP-D-GRVVSSGSTDGTVRLWDLS  400 (466)
T ss_pred             eecCCCceeEEecCCce---EEEEEECC-C-CCEEEEecCCCceEEEecc
Confidence            99988763333322221   24567777 6 55555 8999999999863

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.9e-20  Score=180.80  Aligned_cols=261  Identities=16%  Similarity=0.161  Sum_probs=203.3

Q ss_pred             cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEeccc---------ccCccccccccCCceEEE
Q 009380          170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSL---------TLKPENIARIMPGRITQM  240 (536)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~---------~~~~~~~~~~~~~~I~~v  240 (536)
                      .+..+.+.++..|.+++..+.|.+....+.          ++..+|.|.||++         ...|...++.|.++|.|+
T Consensus       281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~li----------t~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v  350 (577)
T KOG0642|consen  281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLI----------TASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCV  350 (577)
T ss_pred             heecceeeeeecchhhhhhhhcCCCCCeEE----------EeccccchhhhhhcccCCccccceeeeEEEecccCceEEE
Confidence            445788889999999999999999999888          4578899999998         223445568899999999


Q ss_pred             EEEecCCccEEEEEeCCCcEEEEECCCCCC------CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQD------EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ++.+  ++..+.+|+.||+|+.|++.....      .......+.||++.|+.+++++.. ..|++|+.||+++.|+...
T Consensus       351 ~v~~--n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~  427 (577)
T KOG0642|consen  351 VVPS--NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTE  427 (577)
T ss_pred             EecC--CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCC
Confidence            9999  999999999999999997753211      123456789999999999999987 8899999999999999887


Q ss_pred             CeEEEeec---CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-------cCCCeEEEEEecCCCCEEE
Q 009380          315 EVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-------HEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       315 ~~~~~~~~---~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-------h~~~i~~i~~~p~~~~~l~  384 (536)
                      ... ..++   ..+..+++++-...+.+.++...-+.-.++++.....+..+..       ....++-|.++|.+ .+.+
T Consensus       428 ~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~  505 (577)
T KOG0642|consen  428 ESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITF  505 (577)
T ss_pred             cCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeE
Confidence            665 2222   2345566777655433444444444445555555444444331       12457888999977 6899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT  449 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~  449 (536)
                      ++..|+.|+++|..++.    .......|...++++++.|+|.+|++++.|+.+++|.+....+.
T Consensus       506 ~~hed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  506 TAHEDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             ecccCCceecccccccc----cchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            99999999999999865    66777789999999999999999999999999999998654443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=4.1e-19  Score=164.46  Aligned_cols=213  Identities=17%  Similarity=0.229  Sum_probs=169.5

Q ss_pred             CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC--------eEEEeecCCCceeEEEecCCCCCEEEEEE
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE--------VFDLVYSSEYAVFSLSQQPNNVNTLYFGE  344 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~--------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~  344 (536)
                      ...-.+.+|+++|..++|+|.+.+.|+|||.|.+|.||.+..+        -...+.+|...|--++|+|...+.|++++
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            4455678999999999999998789999999999999998653        24567789999999999999999999999


Q ss_pred             CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC-ceeEEEEc
Q 009380          345 GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR-AVHSAYFS  423 (536)
Q Consensus       345 ~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~-~v~~l~~s  423 (536)
                      .|.+|.+||+.+++.+.++. |.+.|.+++|+.+| .+|+|.+.|..|+|||.++++    .+..-..|.+ .-..+.|-
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~----~v~e~~~heG~k~~Raifl  225 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGT----VVSEGVAHEGAKPARAIFL  225 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCc----EeeecccccCCCcceeEEe
Confidence            99999999999999988888 99999999999988 699999999999999999974    2222335544 44567788


Q ss_pred             cCCCeEEEEe----CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE-EEEcCCCcEEEEcCCcccc
Q 009380          424 PSGSSLATTS----FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV-FIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       424 p~g~~l~t~s----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~gs~dg~I~v~d~~~~~~  495 (536)
                      .+|. |+|.+    .+.++.+||..+.+....+.........   +-.-|.+|..+| ++|-.|+.|+.|.+....+
T Consensus       226 ~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv---l~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P  298 (472)
T KOG0303|consen  226 ASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV---LLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP  298 (472)
T ss_pred             ccCc-eeeeccccccccceeccCcccccCcceeEEeccCCce---EEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence            8888 55544    3678999999887655444322222211   225578887774 5677799999999987653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.84  E-value=2.6e-19  Score=165.74  Aligned_cols=214  Identities=13%  Similarity=0.190  Sum_probs=178.1

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC---CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD---EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ...+|.++|..++|+|. +...||+|+.|.+|.||++.....   ....+..+.+|...|.-++|+|...+.|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            45789999999999997 557899999999999999976432   13567789999999999999999889999999999


Q ss_pred             eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEE
Q 009380          306 LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMA  384 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~  384 (536)
                      +|.+||+.++.......|...|++++|+.+| .+|++.+.|..|+|||.++++.+..-.+|.+. -..+-|..++ .++.
T Consensus       155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g-~i~t  232 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG-KIFT  232 (472)
T ss_pred             eEEEEeccCCceeeecCCCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC-ceee
Confidence            9999999999887778899999999999999 89999999999999999999998888778753 3445666666 4555


Q ss_pred             EEe---CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCC
Q 009380          385 TSS---TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFE  447 (536)
Q Consensus       385 s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~  447 (536)
                      ||-   .++.+-+||..+.+  .+...........|.---|+|+.+.++.++ .|+.|+.|.+.+..
T Consensus       233 TGfsr~seRq~aLwdp~nl~--eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLE--EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCccccc--CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            553   36889999998865  234444556778888888999888777666 69999999987654

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=3.1e-17  Score=166.81  Aligned_cols=303  Identities=23%  Similarity=0.343  Sum_probs=226.6

Q ss_pred             ccccceEEeccccc--CccccccccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          211 IEVGSCVDIGSLTL--KPENIARIMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       211 ~~~dg~v~lw~~~~--~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      ...++.+.+|+...  ........|...|..+.|+|  ++.++++++. ++.+++|++..    ...+..+.+|...|.+
T Consensus       130 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~  203 (466)
T COG2319         130 SSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRT----GKPLSTLAGHTDPVSS  203 (466)
T ss_pred             CCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCC----CceEEeeccCCCceEE
Confidence            45588999999864  55666788999999999999  8888888885 99999999997    5778888889999999


Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCCeEEE--eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEe
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWL  364 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~--~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~  364 (536)
                      ++|+|++...+++++.|+.|++||...+....  ...|.... ...|++++ ..+++++.|+.+++||++.... +..+.
T Consensus       204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~  281 (466)
T COG2319         204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLS  281 (466)
T ss_pred             EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEe
Confidence            99999883256666999999999988665554  44555554 33899998 7888999999999999997665 44446


Q ss_pred             ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee--ecccCceeEEEEccCCCeEEEE-eCCCcEEEE
Q 009380          365 LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV--LSHKRAVHSAYFSPSGSSLATT-SFDDTIGIW  441 (536)
Q Consensus       365 ~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~--~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iw  441 (536)
                      .|...|.++.|+|++ ..+++++.|+.+.+||+....    .....  ..|...+..+.|.+++..++.+ ..|+.+.+|
T Consensus       282 ~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  356 (466)
T COG2319         282 GHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK----LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW  356 (466)
T ss_pred             cCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc----eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEee
Confidence            789999999999966 566668888999999888753    22223  3677789999994343556666 688899999


Q ss_pred             eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEE-EcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380          442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI-GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT  520 (536)
Q Consensus       442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~-gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~  520 (536)
                      ++...........  ...    ...+.+.+ ...++. +..++.+.+|+.................  ....+.+ ++..
T Consensus       357 ~~~~~~~~~~~~~--~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~  426 (466)
T COG2319         357 DLRTGKPLKTLEG--HSN----VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV--TSLDFSP-DGKS  426 (466)
T ss_pred             ecCCCceeEEecC--Cce----EEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcE--EEEEECC-CCcE
Confidence            9987762222211  111    22355666 433443 6888999999999887776665543222  2345555 4578


Q ss_pred             EEEEccCCeEEEEecC
Q 009380          521 LAGATGGGQVYVWTSD  536 (536)
Q Consensus       521 lasgs~Dg~v~iW~~d  536 (536)
                      +++++.++.+.+|++.
T Consensus       427 ~~~~~~~~~~~~~~~~  442 (466)
T COG2319         427 LASGSSDNTIRLWDLK  442 (466)
T ss_pred             EEEecCCCcEEEEecc
Confidence            8889999999999863

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.83  E-value=2.2e-17  Score=152.17  Aligned_cols=235  Identities=17%  Similarity=0.176  Sum_probs=180.5

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC--eEEEEECC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG--LIRLMDAE  313 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg--~I~vwd~~  313 (536)
                      .|..+.|..  +...|..|+.|| .++|+....    ............|..+-|+.   .+++..+.+.  .++++++.
T Consensus         7 ti~~~~~Nq--d~~~lsvGs~~G-yk~~~~~~~----~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K   76 (391)
T KOG2110|consen    7 TINFIGFNQ--DSTLLSVGSKDG-YKIFSCSPF----EKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK   76 (391)
T ss_pred             ceeeeeecc--ceeEEEccCCCc-eeEEecCch----HHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc
Confidence            466667887  889999999987 578887752    22222222334466666765   5666666554  48999999


Q ss_pred             CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCCCeEEEEEecCCCCEEEEE-e-C
Q 009380          314 KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNPNIMATS-S-T  388 (536)
Q Consensus       314 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~~~p~~~~~l~s~-s-~  388 (536)
                      ++..+.-......|.++.++.+   .|++.-.+ .|+|||+++.+.++++.   .+...+.++++++.+ .+++-- + .
T Consensus        77 k~~~ICe~~fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t  151 (391)
T KOG2110|consen   77 KKTTICEIFFPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTT  151 (391)
T ss_pred             cCceEEEEecCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCC
Confidence            8877777777789999999864   46666655 59999999999988776   355567777777755 455543 2 3


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc-EEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                      .|.|.+||+.+.+    ....+..|.+.+.+++|+++|.+|||++..|+ ||||.+.+++.+..++....   ++.+..+
T Consensus       152 ~GdV~l~d~~nl~----~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IySL  224 (391)
T KOG2110|consen  152 SGDVVLFDTINLQ----PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYSL  224 (391)
T ss_pred             CceEEEEEcccce----eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEEE
Confidence            5899999999864    45566689999999999999999999999998 89999999999999875433   5667779


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          468 IWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       468 ~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      +|++++++|++.+..++|+||.+..
T Consensus       225 ~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  225 SFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EECCCCCeEEEecCCCeEEEEEecc
Confidence            9999999999999999999998753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=9.9e-19  Score=155.88  Aligned_cols=250  Identities=16%  Similarity=0.182  Sum_probs=188.9

Q ss_pred             cccccceeeeecCCCCcccc-cccccccccccccccceEEecccccCccc----------cccccCCceEEEEEEecCCc
Q 009380          180 KDEFNGFKTCKDEGLGVGSC-DLIKGVVKTEKIEVGSCVDIGSLTLKPEN----------IARIMPGRITQMKFLPCSDV  248 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~~~~dg~v~lw~~~~~~~~----------~~~~~~~~I~~v~~~p~~~~  248 (536)
                      -.|.-.+..+.|.|+.+.+. .+        -...+-.++||.+..+...          ....+..++++..|+.. +-
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdl--------LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~-dp  163 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDL--------LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEV-DP  163 (364)
T ss_pred             CCCCCCccceEecCCccccCcch--------hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccC-Cc
Confidence            45777788888888885222 11        1122337888887532211          12334779999999875 77


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-Eeec--C-C
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYS--S-E  324 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~--~-~  324 (536)
                      ++|.+++-|-+..|||++.+.. +.....+..|...|..|+|...+.+.|++++.||+||+||++...-. .++.  . .
T Consensus       164 ~~igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~  242 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPS  242 (364)
T ss_pred             ceeEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCC
Confidence            8999999999999999997421 34566788999999999999988789999999999999999875433 2332  2 4


Q ss_pred             CceeEEEecCCCCCEEEEEECC-CeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                      .+..-++|++.+++++++-..| ..|.|.|+|... ++..+++|.+.|+.|+|.|.....++|++.|..+-|||+...-.
T Consensus       243 ~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  243 TPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             CcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence            6889999999999998876544 579999999864 48899999999999999999989999999999999999987543


Q ss_pred             -CCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEE
Q 009380          403 -DKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGI  440 (536)
Q Consensus       403 -~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~i  440 (536)
                       ....++..+...+.|+.+.|++ .+..|+.+. ++.+.|
T Consensus       323 ~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  323 ENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             cCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence             1223333445778999999998 556666655 444444

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.83  E-value=6.8e-19  Score=156.94  Aligned_cols=245  Identities=17%  Similarity=0.227  Sum_probs=181.5

Q ss_pred             cccCCceEEEEEEecCCc---cEEEEEeCCCcEEEEECCCCCCCCCceEE-----eccCCCCEEEEEEecCCCCEEEEEE
Q 009380          231 RIMPGRITQMKFLPCSDV---RMVVAGSKLGNITFWNLDSQQDEDNGIYL-----FRTHLGPISGIVTQQYCLSKIFTSC  302 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~---~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-----~~~h~~~V~~l~~~~~~~~~l~s~s  302 (536)
                      ..|+-+++.+.|.|...|   ++||+.+.  .+++|.+...+....+...     -..+..++++..|+.-.+++|.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            357889999999994332   45666553  8999999853321111111     2345678999999998889999999


Q ss_pred             CCCeEEEEECCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCCCeEEEEE
Q 009380          303 YDGLIRLMDAEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTIDF  375 (536)
Q Consensus       303 ~dg~I~vwd~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~~  375 (536)
                      -|-+..|||++++.    ...+..|+..|..++|...+.++|++.+.||.|++||+|..+....+-   ....+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999872    356778999999999999888899999999999999999876533332   22567889999


Q ss_pred             ecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          376 NPRNPNIMATSSTD-GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       376 ~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      ++.+++++|+-..| ..|.|.|+|...   ..+..+.+|.+.|+.++|.| ....|++++.|..+.|||+...-......
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED  327 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence            99999999987765 569999999853   34556669999999999999 66789999999999999997543210000


Q ss_pred             --ccCCCCceeeeeEEEEcC-CCCEEEEEcCC
Q 009380          454 --HNNQTGRWISSFRAIWGW-DDSCVFIGNMT  482 (536)
Q Consensus       454 --~~~~~~~~~~~~~~~~s~-~g~~l~~gs~d  482 (536)
                        ..-..+..+..  +.|++ .+..|+++..+
T Consensus       328 Pilay~a~~EVNq--i~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  328 PILAYTAGGEVNQ--IQWSSSQPDWIAICFGK  357 (364)
T ss_pred             chhhhhccceeee--eeecccCCCEEEEEecC
Confidence              00011222333  66875 45677776543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=7.4e-19  Score=172.36  Aligned_cols=273  Identities=12%  Similarity=0.182  Sum_probs=204.3

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .|+.++|-|  ||..|+.+.. ..+.+||..+    +..+.++++|...|.|++|+.+| ..+++|+.|..|.+|+..-.
T Consensus        14 ci~d~afkP--DGsqL~lAAg-~rlliyD~nd----G~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klE   85 (1081)
T KOG1538|consen   14 CINDIAFKP--DGTQLILAAG-SRLLVYDTSD----GTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLE   85 (1081)
T ss_pred             chheeEECC--CCceEEEecC-CEEEEEeCCC----cccccccccccceEEEEEEccCC-ceeccCCCceeEEEeccccc
Confidence            799999999  8877766553 4799999998    78899999999999999999999 99999999999999986543


Q ss_pred             eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                      - ...+.|...|.|+.|+|-. +.|++++.+ ..-+|...... +...+ ....|.+.+|..|| ++|+.|-.+|+|.|-
T Consensus        86 G-~LkYSH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDG-qylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   86 G-ILKYSHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDG-QYLALGMFNGTISIR  159 (1081)
T ss_pred             c-eeeeccCCeeeEeecCchH-HHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCC-cEEEEeccCceEEee
Confidence            2 3456799999999999987 788888776 67888765433 22222 35678899999988 799999999999987


Q ss_pred             eCCCCCCCCCCccee-ecccCceeEEEEccCC-----CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380          396 DLRSMATDKPEPMKV-LSHKRAVHSAYFSPSG-----SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       396 dl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g-----~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      +-...   ....+.. -+.+.+|++++|+|+.     ..+++.....++.+|.+.. +.+..-+.-.     ....++.+
T Consensus       160 Nk~gE---ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~-----FdP~CisY  230 (1081)
T KOG1538|consen  160 NKNGE---EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALN-----FDPCCISY  230 (1081)
T ss_pred             cCCCC---cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCC-----CCchhhee
Confidence            53321   1111111 2478899999999953     4788888888888887743 2221111101     11223557


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      -++|.|++.|+.|+.+.+|-..+ -.+.++..  .......+..+| +++.++.|+.||+|-.|++
T Consensus       231 f~NGEy~LiGGsdk~L~~fTR~G-vrLGTvg~--~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  231 FTNGEYILLGGSDKQLSLFTRDG-VRLGTVGE--QDSWIWTVQAKP-NSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             ccCCcEEEEccCCCceEEEeecC-eEEeeccc--cceeEEEEEEcc-CCceEEEEEccCeeehhhh
Confidence            78999999999999999997544 35555543  223335788899 5699999999999988875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.82  E-value=4.2e-19  Score=156.23  Aligned_cols=290  Identities=17%  Similarity=0.149  Sum_probs=198.6

Q ss_pred             CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEEC
Q 009380          225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      +|..+++.|.+.|+++.|-.  ++ +|.+|..-|.|.+|++.+    ......+. .|+..|+.+...|+  ..|.+-+.
T Consensus         5 dP~fvLRp~~~~v~s~~fqa--~~-rL~sg~~~G~V~~w~lqt----~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgR   75 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQA--NE-RLMSGLSVGIVKMWVLQT----ERDLPLIRLFGRLFITNLQSIPN--DSLDTQGR   75 (323)
T ss_pred             CCeeEeccccchheehhhcc--ch-hhhcccccceEEEEEeec----CccchhhhhhccceeeceeecCC--cchhhcCC
Confidence            45566789999999999987  43 599999999999999998    56666677 57788999999887  57899999


Q ss_pred             CCeEEEEECCCCeEEEeecCCCceeEEEecCCC-----CC---EEEEEECCC-eEEEEECCCCccceeEe----ccCCCe
Q 009380          304 DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN-----VN---TLYFGEGQG-GLNIWDVRSRKSATEWL----LHEARI  370 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~-----~~---~l~~g~~dg-~i~i~d~~~~~~~~~~~----~h~~~i  370 (536)
                      |+.+.+|++..+.+..+..  -.+.++-|.+..     .+   .++.-+... .+.+-|......+....    +..+.+
T Consensus        76 d~~L~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv  153 (323)
T KOG0322|consen   76 DPLLILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV  153 (323)
T ss_pred             CceEEEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence            9999999998866544332  334444444321     11   111111100 11222221111111111    233556


Q ss_pred             EEEEEecC-CC-CEEEEEeCCCcEEEEeCCCCCC------CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEe
Q 009380          371 NTIDFNPR-NP-NIMATSSTDGTACIWDLRSMAT------DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS  442 (536)
Q Consensus       371 ~~i~~~p~-~~-~~l~s~s~dg~i~iwdl~~~~~------~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd  442 (536)
                      .|..+.-+ +. -++++|-++|.+.+||+.++..      ..........|..+|.++.|.+.-..=++++.+..+..|+
T Consensus       154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S  233 (323)
T KOG0322|consen  154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS  233 (323)
T ss_pred             eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence            66664322 22 3567777899999999998531      1122333446999999999998666677888888999999


Q ss_pred             CCCC--Ccc----eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380          443 GVNF--ENT----SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH  516 (536)
Q Consensus       443 ~~~~--~~~----~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~  516 (536)
                      +...  ...    .++.+....+       +..-||++.+++++.|+.|+||+.++.++++.+.-|...+  .+++|+| 
T Consensus       234 l~~s~gslq~~~e~~lknpGv~g-------vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv--n~vAfsp-  303 (323)
T KOG0322|consen  234 LNHSTGSLQIRKEITLKNPGVSG-------VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV--NAVAFSP-  303 (323)
T ss_pred             eccccCcccccceEEecCCCccc-------eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce--eEEEeCC-
Confidence            8643  111    1222222222       3346899999999999999999999999999998876443  4789999 


Q ss_pred             CCCEEEEEccCCeEEEEec
Q 009380          517 QVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       517 ~~~~lasgs~Dg~v~iW~~  535 (536)
                      +.+.+|.++.|++|.+|++
T Consensus       304 d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  304 DCELMAAASKDARISLWKL  322 (323)
T ss_pred             CCchhhhccCCceEEeeec
Confidence            4589999999999999986

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.82  E-value=1.5e-18  Score=154.58  Aligned_cols=258  Identities=15%  Similarity=0.131  Sum_probs=190.2

Q ss_pred             ccceecccccceeeeecCCCCccc-ccccc--cccccccccccceEEecccccCccc----------cc-cccCCceEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGS-CDLIK--GVVKTEKIEVGSCVDIGSLTLKPEN----------IA-RIMPGRITQM  240 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~--~~~~~~~~~~dg~v~lw~~~~~~~~----------~~-~~~~~~I~~v  240 (536)
                      +.+.+.-|..+|+.+.-+|....+ +++.+  +..+.+     .++-||.+..+-..          .+ ..+-+.|.|+
T Consensus        55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl-----~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cv  129 (370)
T KOG1007|consen   55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVL-----TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCV  129 (370)
T ss_pred             hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcce-----eeEEEEecccccCccccchhhHhhcCCHHHhCceeeE
Confidence            456677788999999988877554 44422  111111     36788987332111          11 1345799999


Q ss_pred             EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-----ccCCCCEEEEEEecCC-CCEEEEEECCCeEEEEECCC
Q 009380          241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-----RTHLGPISGIVTQQYC-LSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-----~~h~~~V~~l~~~~~~-~~~l~s~s~dg~I~vwd~~~  314 (536)
                      .|.|  ++..+++-. |..|.+|+++....   .+..+     ..|....++-+|+|.. .+.+++. .|++++.||+++
T Consensus       130 ew~P--ns~klasm~-dn~i~l~~l~ess~---~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT  202 (370)
T KOG1007|consen  130 EWEP--NSDKLASMD-DNNIVLWSLDESSK---IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT  202 (370)
T ss_pred             EEcC--CCCeeEEec-cCceEEEEcccCcc---hheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence            9999  888888766 78999999987432   12221     2356678888999932 2555555 599999999997


Q ss_pred             CeEEEe--ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          315 EVFDLV--YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       315 ~~~~~~--~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ......  ..|...|..+.|+|+...+|++++.||.|+|||.|.. .++.++.+|...|.+|.|+|...+++++|+.|..
T Consensus       203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence            654433  3577889999999999889999999999999999965 4589999999999999999988899999999999


Q ss_pred             EEEEeCCCCCC-------------------------CCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCC
Q 009380          392 ACIWDLRSMAT-------------------------DKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       392 i~iwdl~~~~~-------------------------~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~  444 (536)
                      |.+|-......                         ....+..+..|...|++++|+. +.-.|++-++||.+.|=.+.
T Consensus       283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            99997654321                         0011223446999999999998 55678888999999887653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.82  E-value=8.9e-19  Score=171.79  Aligned_cols=273  Identities=13%  Similarity=0.122  Sum_probs=209.2

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEE
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFW  263 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iw  263 (536)
                      .|..+.|.|||.-+.-.           .+..+.+||.+.. ..+.+++|.+.|+|++|+.  ||+.+|+|+.|..|.+|
T Consensus        14 ci~d~afkPDGsqL~lA-----------Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W   80 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-----------AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIW   80 (1081)
T ss_pred             chheeEECCCCceEEEe-----------cCCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEe
Confidence            78899999999876632           3458889997443 3456799999999999999  99999999999999999


Q ss_pred             ECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEE
Q 009380          264 NLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFG  343 (536)
Q Consensus       264 d~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g  343 (536)
                      +-.-     +.+..+ .|+..|.|+.|+|-. ..|++|+-.. .-+|........ .+.....|.+++|..+| .+++.|
T Consensus        81 ~~kl-----EG~LkY-SH~D~IQCMsFNP~~-h~LasCsLsd-FglWS~~qK~V~-K~kss~R~~~CsWtnDG-qylalG  150 (1081)
T KOG1538|consen   81 TSKL-----EGILKY-SHNDAIQCMSFNPIT-HQLASCSLSD-FGLWSPEQKSVS-KHKSSSRIICCSWTNDG-QYLALG  150 (1081)
T ss_pred             cccc-----cceeee-ccCCeeeEeecCchH-HHhhhcchhh-ccccChhhhhHH-hhhhheeEEEeeecCCC-cEEEEe
Confidence            9763     333333 599999999999998 8899998543 568887654332 22344678999999998 899999


Q ss_pred             ECCCeEEEEECCCCccceeEe---ccCCCeEEEEEecCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc
Q 009380          344 EGQGGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNP----NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA  416 (536)
Q Consensus       344 ~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~~~p~~~----~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~  416 (536)
                      -.+|+|.+-+- +++....+.   +..++|.+|+|+|..+    .++++.....++.+|.+...     .+-........
T Consensus       151 ~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-----~Igk~r~L~Fd  224 (1081)
T KOG1538|consen  151 MFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-----QIGKDRALNFD  224 (1081)
T ss_pred             ccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-----eecccccCCCC
Confidence            99999999864 444433333   5778999999999532    47888888888888887652     12222234455


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      ..|+.+.++|.+++.|+.|+.+.+|.- .+-.+.++   .....|+.+  +...|++++++.|+.||+|-.|++..
T Consensus       225 P~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTv---g~~D~WIWt--V~~~PNsQ~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  225 PCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTV---GEQDSWIWT--VQAKPNSQYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             chhheeccCCcEEEEccCCCceEEEee-cCeEEeec---cccceeEEE--EEEccCCceEEEEEccCeeehhhhHH
Confidence            678999999999999999999999963 44444443   235567776  56789999999999999999998743

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.82  E-value=1.1e-18  Score=158.25  Aligned_cols=251  Identities=21%  Similarity=0.316  Sum_probs=179.9

Q ss_pred             ccCCCCEEEEEEec----CCCCEEEEEECCCeEEEEECCCCeE---EEee---cCCCceeEEEecCCC---CCEEEEEEC
Q 009380          279 RTHLGPISGIVTQQ----YCLSKIFTSCYDGLIRLMDAEKEVF---DLVY---SSEYAVFSLSQQPNN---VNTLYFGEG  345 (536)
Q Consensus       279 ~~h~~~V~~l~~~~----~~~~~l~s~s~dg~I~vwd~~~~~~---~~~~---~~~~~i~~l~~~~~~---~~~l~~g~~  345 (536)
                      ..|..+|..++|++    +.+..+++++ ...+.+|.......   ...+   .++.....++|..+.   .-++++|+.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            46888999999985    2334555555 56788888765321   1111   356677788886542   347888899


Q ss_pred             CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----cccCceeEEE
Q 009380          346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----SHKRAVHSAY  421 (536)
Q Consensus       346 dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~~~~~v~~l~  421 (536)
                      -|.|+|.|+.++++...+.+|...|+.|.++|+.+++++++|.|..|++|++++..     ++.++    +|...|.++.
T Consensus       114 ~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-----Cv~VfGG~egHrdeVLSvD  188 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-----CVAVFGGVEGHRDEVLSVD  188 (385)
T ss_pred             eeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-----EEEEecccccccCcEEEEE
Confidence            99999999999999999999999999999999999999999999999999999853     33333    6999999999


Q ss_pred             EccCCCeEEEEeCCCcEEEEeCCCCCcceEEec-----cCCCCceeee---eEEEE-------------cCCCCEEEEEc
Q 009380          422 FSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH-----NNQTGRWISS---FRAIW-------------GWDDSCVFIGN  480 (536)
Q Consensus       422 ~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~-------------s~~g~~l~~gs  480 (536)
                      |+++|.+|++++.|.+|++|++...+....+..     .+.+.+.+..   .-..|             -.-|.++++-+
T Consensus       189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSks  268 (385)
T KOG1034|consen  189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKS  268 (385)
T ss_pred             EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecc
Confidence            999999999999999999999973321111100     0000000000   00111             11367899988


Q ss_pred             CCCcEEEEcC-Ccccc-------------ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          481 MTRTVEVISP-AQRRS-------------VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       481 ~dg~I~v~d~-~~~~~-------------~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      -++.|..|.. .-.+.             +.++.-....+....+++.|.. .+||.|+..|.|++||++
T Consensus       269 cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~  337 (385)
T KOG1034|consen  269 CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLD  337 (385)
T ss_pred             cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECC
Confidence            8999999987 22222             2333333344555678888854 899999999999999985

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.82  E-value=1.3e-17  Score=169.24  Aligned_cols=266  Identities=14%  Similarity=0.153  Sum_probs=189.3

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-------EEeecCCCceeEE
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-------DLVYSSEYAVFSL  330 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-------~~~~~~~~~i~~l  330 (536)
                      +.+.||++...   ......+. -...|.|+.|+|..+++++.|+++|.|.+||+..+..       .....|..+++.+
T Consensus       222 ~~~~vW~~~~p---~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNP---NTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCC---CCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            47999999974   23333333 3568999999999999999999999999999987643       2334688999999


Q ss_pred             EecCCCC-CEEEEEECCCeEEEEECCCCcc-cee--E--ec-------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380          331 SQQPNNV-NTLYFGEGQGGLNIWDVRSRKS-ATE--W--LL-------HEARINTIDFNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       331 ~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~-~~~--~--~~-------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                      .|..+-. .-+++++.||.|..|+++.-.. ...  +  ..       -...+++++|.+..++.|+.|+.+|.|.--..
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r  377 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR  377 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence            9976542 3488888999999999875432 111  1  11       22468899999999999999999999877443


Q ss_pred             CCCCCCC----CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          398 RSMATDK----PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       398 ~~~~~~~----~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                      .......    ........|.++|+++.++|-+..++..+.|.+++||... ...++..+....     ...+.++|||.
T Consensus       378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~-----~~v~~vaWSpt  452 (555)
T KOG1587|consen  378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP-----DYVTDVAWSPT  452 (555)
T ss_pred             cCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-----ceeeeeEEcCc
Confidence            3322111    1122444689999999999977666555559999999976 444444443221     12455889997


Q ss_pred             CC-EEEEEcCCCcEEEEcCCcc--ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          473 DS-CVFIGNMTRTVEVISPAQR--RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       473 g~-~l~~gs~dg~I~v~d~~~~--~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .. .|+++..+|.|.+||+...  .++.+..-+  ..+...+.|++ .+..|++|...|.+++|++
T Consensus       453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSP-NGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             CceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCC-CCcEEEEecCCCcEEEEEc
Confidence            54 5788888999999999654  334443332  23334456665 5799999999999999987

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.5e-17  Score=144.84  Aligned_cols=276  Identities=16%  Similarity=0.233  Sum_probs=196.6

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      ..|.+-+|+|  .+++|++|..+|+|.+..+....      .....+..+++|.++|..++|+.   .+|++|+ ||.|+
T Consensus        11 ~tvf~qa~sp--~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~   84 (325)
T KOG0649|consen   11 NTVFAQAISP--SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVY   84 (325)
T ss_pred             HHHHHHhhCC--cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEE
Confidence            3467778999  89999999999999999986421      11345667799999999999984   5788877 59999


Q ss_pred             EEECCCCe----EEEe------e----cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEE
Q 009380          309 LMDAEKEV----FDLV------Y----SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTID  374 (536)
Q Consensus       309 vwd~~~~~----~~~~------~----~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~  374 (536)
                      -|..+...    +..+      +    ..--.|+++-..|.. +.+++++.|+.++-||+++|+...++.+|++.|.++.
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv  163 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV  163 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence            99875421    1110      0    112368899999887 5666666899999999999999999999999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      --..+ -.+++|++||++++||.++.+..  ..+..+.        -...|.+++.+  ..++++|+ ...+.+|.++..
T Consensus       164 ~R~~~-~qilsG~EDGtvRvWd~kt~k~v--~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrss  237 (325)
T KOG0649|consen  164 GRNAN-GQILSGAEDGTVRVWDTKTQKHV--SMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSS  237 (325)
T ss_pred             ecccC-cceeecCCCccEEEEecccccee--EEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCC
Confidence            85544 36899999999999999997532  1111111        22345666654  55777666 456999999999


Q ss_pred             CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380          447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG  526 (536)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~  526 (536)
                      ++..++.....    +..  +.|.  ...+++++..+.|.-|.+..- .-..++..+......++..+|  -.+|..++.
T Consensus       238 e~t~vfpipa~----v~~--v~F~--~d~vl~~G~g~~v~~~~l~Gv-l~a~ip~~s~~c~s~s~~~~p--~k~~s~ag~  306 (325)
T KOG0649|consen  238 ESTCVFPIPAR----VHL--VDFV--DDCVLIGGEGNHVQSYTLNGV-LQANIPVESTACYSASWQTSP--IKFISIAGF  306 (325)
T ss_pred             CceEEEecccc----eeE--eeee--cceEEEeccccceeeeeeccE-EEEeccCCccceeeecccCCc--eEEEEeccc
Confidence            99988864432    121  3343  457888888888999987543 444445444444434444556  357778888


Q ss_pred             CCeEEEEe
Q 009380          527 GGQVYVWT  534 (536)
Q Consensus       527 Dg~v~iW~  534 (536)
                      .+++.|+.
T Consensus       307 s~~~~i~~  314 (325)
T KOG0649|consen  307 SNKLHILK  314 (325)
T ss_pred             ceeeeeee
Confidence            88888863

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=7.5e-18  Score=173.31  Aligned_cols=293  Identities=18%  Similarity=0.163  Sum_probs=207.7

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccc------cCCceEEEEEEecCCccEEEEEeCCC
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARI------MPGRITQMKFLPCSDVRMVVAGSKLG  258 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~------~~~~I~~v~~~p~~~~~~l~tg~~dg  258 (536)
                      .-..+.|+|....++..          ...-.|.+||.....  .+..      ....|+.+.+-...|..++++|+.||
T Consensus      1066 ~pk~~~~hpf~p~i~~a----------d~r~~i~vwd~e~~~--~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAA----------DDRERIRVWDWEKGR--LLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred             CCceeeecCCCceeEEc----------CCcceEEEEecccCc--eeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence            34556677777666643          222377888864322  2222      25689999998876778999999999


Q ss_pred             cEEEEECCCCC-CCCCceEEeccC-------CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCcee
Q 009380          259 NITFWNLDSQQ-DEDNGIYLFRTH-------LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVF  328 (536)
Q Consensus       259 ~v~iwd~~~~~-~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~  328 (536)
                      .|+||+-.... ...+.+..+.+-       .+.=.-+.|.... .+|++++.-..|+|||..++....-  ++.+..|+
T Consensus      1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVT 1212 (1387)
T ss_pred             eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccCCCccce
Confidence            99999865432 223344433321       1111345788777 6777777789999999998866543  34566788


Q ss_pred             EEEecCCCCCEEEEEECCCeEEEEECCCCc---cceeEeccCCC--eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380          329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRK---SATEWLLHEAR--INTIDFNPRNPNIMATSSTDGTACIWDLRSMATD  403 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~h~~~--i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~  403 (536)
                      ++.-+-..++++++|..||.|++||.|...   .+..+..|...  |..+.+.+.|-..|++|+.||.|++||+|...  
T Consensus      1213 aLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-- 1290 (1387)
T KOG1517|consen 1213 ALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-- 1290 (1387)
T ss_pred             eecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc--
Confidence            887766666899999999999999999754   37778889888  99999999776679999999999999999842  


Q ss_pred             CCCcceeeccc---CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCc-eeeeeEEEEcCCCCEEEE
Q 009380          404 KPEPMKVLSHK---RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGR-WISSFRAIWGWDDSCVFI  478 (536)
Q Consensus       404 ~~~~~~~~~~~---~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~-~~~~~~~~~s~~g~~l~~  478 (536)
                      .........|.   +..+++..++....+++|+. +.|+||++.. +.+..+..+ ...+. .....++.|+|..-.+++
T Consensus      1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred             ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhh
Confidence            12233333332   35999999999999999998 9999999853 333333211 11111 112244789999889999


Q ss_pred             EcCCCcEEEEcCCccc
Q 009380          479 GNMTRTVEVISPAQRR  494 (536)
Q Consensus       479 gs~dg~I~v~d~~~~~  494 (536)
                      |+.|..|.||.....+
T Consensus      1369 G~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             ccCCceEEEeecCCcC
Confidence            9999999999876653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1e-18  Score=169.00  Aligned_cols=262  Identities=15%  Similarity=0.192  Sum_probs=189.1

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC----CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ----QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD  304 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~----~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d  304 (536)
                      ....|.+.|..++|+|  ....|++++.||.|.+|+++..    .....++.+|.+|.++|.|++..+.+ ..+++|+.|
T Consensus       289 tl~s~~d~ir~l~~~~--sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~D  365 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHP--SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGID  365 (577)
T ss_pred             eeecchhhhhhhhcCC--CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccC
Confidence            4567889999999999  7789999999999999999431    22357889999999999999999998 999999999


Q ss_pred             CeEEEEECCCC-----------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeE
Q 009380          305 GLIRLMDAEKE-----------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARIN  371 (536)
Q Consensus       305 g~I~vwd~~~~-----------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~  371 (536)
                      |+|+.|++...           -...+.+|.+.++.+++++.. ..|++++.||+++.|+.....+ .++..  -.+.-.
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            99999976521           123456899999999999987 7799999999999999876655 33332  123334


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC---CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP---EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~---~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      ++++-.....+.++...-+.--++|+........   ...........+.-+.++|.+.+.+++..|+.|+++|..++..
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            5666543322333333233333333333210000   0000011224678899999999999999999999999999888


Q ss_pred             ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      +.......     ......++.|+|.+|++|+.|+.+++|.+....++....
T Consensus       524 l~s~~a~~-----~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~  570 (577)
T KOG0642|consen  524 LHSMVAHK-----DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST  570 (577)
T ss_pred             chheeecc-----ceecceeecCCCceEEeecCCceeehhhccchheeeccc
Confidence            77654322     122336689999999999999999999987765554443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.80  E-value=1.3e-16  Score=157.93  Aligned_cols=278  Identities=10%  Similarity=0.119  Sum_probs=177.7

Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECC-CCeEEEe--ecCCCc
Q 009380          251 VVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAE-KEVFDLV--YSSEYA  326 (536)
Q Consensus       251 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~-~~~~~~~--~~~~~~  326 (536)
                      +++...++.|.+|++.+.. ....+..+. +.+....++++|++ ++|++++ .++.|.+|++. ++.+...  ......
T Consensus         5 y~~~~~~~~I~~~~~~~~g-~l~~~~~~~-~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~   81 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEG-ALTLLQVVD-VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS   81 (330)
T ss_pred             EEEcCCCCCEEEEEECCCC-ceeeeeEEe-cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence            4445678999999996421 123444443 34567789999998 7776664 58889999997 3443222  223345


Q ss_pred             eeEEEecCCCCCEEEEEE-CCCeEEEEECCCCc-c---ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380          327 VFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRK-S---ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA  401 (536)
Q Consensus       327 i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~-~---~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~  401 (536)
                      ...++++|++ +.+++++ .++.|.+||+.+.. .   +..+. +.....+++++|++..++++...++.|.+||+.+..
T Consensus        82 p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         82 PTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             ceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            6789999998 6666665 48899999997432 2   22222 334567789999886555666677999999997632


Q ss_pred             CCCCC-cce-eecccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCC--C--cceEEecc-C--CCCceeeeeEEEEcC
Q 009380          402 TDKPE-PMK-VLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNF--E--NTSMIHHN-N--QTGRWISSFRAIWGW  471 (536)
Q Consensus       402 ~~~~~-~~~-~~~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~--~--~~~~~~~~-~--~~~~~~~~~~~~~s~  471 (536)
                      ..... ... ..........+.|+|+|++++++.. ++.|.+|++...  +  ....+... .  ....  ....+.++|
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~i~~~p  237 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR--WAADIHITP  237 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc--cceeEEECC
Confidence            11100 000 1122345678999999999988876 899999999732  2  12222111 1  1111  122367899


Q ss_pred             CCCEEEEEcC-CCcEEEEcCCccccceeccCCc-eeeeeeeEeecCCCCCEEEEEcc-CCeEEEEecC
Q 009380          472 DDSCVFIGNM-TRTVEVISPAQRRSVATLQSPY-ISAIPCRFHAHPHQVGTLAGATG-GGQVYVWTSD  536 (536)
Q Consensus       472 ~g~~l~~gs~-dg~I~v~d~~~~~~~~~l~~~~-~~~~~~~~~~~p~~~~~lasgs~-Dg~v~iW~~d  536 (536)
                      +++++++++. ++.|.+|++.......++..+. ....+..+.++| ++.+|++++. ++.|.+|+++
T Consensus       238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH-SGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC-CCCEEEEEEccCCcEEEEEEc
Confidence            9999999865 6889999986543222222111 111234678888 5678777664 8999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.2e-17  Score=171.82  Aligned_cols=288  Identities=16%  Similarity=0.205  Sum_probs=202.6

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC---CCEEEEEEecC-CCCEEEEEECCCeEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL---GPISGIVTQQY-CLSKIFTSCYDGLIRL  309 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~~~~-~~~~l~s~s~dg~I~v  309 (536)
                      .+.-..+.|+|  -...+++++..-.|+|||.+.    +..+..|..+.   ..|+.+.+-.. ...++++|+.||.|+|
T Consensus      1064 ~~~pk~~~~hp--f~p~i~~ad~r~~i~vwd~e~----~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1064 NQPPKTLKFHP--FEPQIAAADDRERIRVWDWEK----GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred             CCCCceeeecC--CCceeEEcCCcceEEEEeccc----CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence            33566788999  667899988778999999987    55555555443   45888887543 3378999999999999


Q ss_pred             EECC-C--CeEEEee----------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEE
Q 009380          310 MDAE-K--EVFDLVY----------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDF  375 (536)
Q Consensus       310 wd~~-~--~~~~~~~----------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~  375 (536)
                      |+-- .  ++...+.          +..+.-.-++|.... .+|++++.-..|+|||......+..+. +....|+++.-
T Consensus      1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred             ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence            9732 2  2221111          111222456787776 456666667799999998877666655 45567888877


Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc--eeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCcceE-
Q 009380          376 NPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA--VHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTSM-  451 (536)
Q Consensus       376 ~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~--v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~~~~-  451 (536)
                      +-.+++++++|..||.|++||.|..... ..+.....|...  |..+.+.+.|- .|++|+.||.|++||++....... 
T Consensus      1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred             cccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence            6666689999999999999999986432 234444578777  99999999764 499999999999999997422222 


Q ss_pred             -EeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc------CCceeeeeeeEeecCCCCCEEEEE
Q 009380          452 -IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ------SPYISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       452 -~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~------~~~~~~~~~~~~~~p~~~~~lasg  524 (536)
                       +......|..++.  +..++....+++|+. +.|.||++.+.++ ..+.      +...... .++.|||.. -+||+|
T Consensus      1296 ~iv~~~~yGs~lTa--l~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~-scL~FHP~~-~llAaG 1369 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTA--LTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSV-SCLAFHPHR-LLLAAG 1369 (1387)
T ss_pred             eeeeccccCcccee--eeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCc-ceeeecchh-Hhhhhc
Confidence             2222222333444  334677889999998 8999999876533 2222      2222222 579999976 789999


Q ss_pred             ccCCeEEEEec
Q 009380          525 TGGGQVYVWTS  535 (536)
Q Consensus       525 s~Dg~v~iW~~  535 (536)
                      +.|..|.||..
T Consensus      1370 ~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1370 SADSTVSIYSC 1380 (1387)
T ss_pred             cCCceEEEeec
Confidence            99999999975

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=1e-17  Score=151.88  Aligned_cols=311  Identities=14%  Similarity=0.142  Sum_probs=209.5

Q ss_pred             eeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEE-EEeCCCcEEEEECC
Q 009380          188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVV-AGSKLGNITFWNLD  266 (536)
Q Consensus       188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~  266 (536)
                      .|.|||+|+++|.+.+           ..+.+-|...-+....-..-+.|.-+.|..  |..+++ ...+++.|.+|++.
T Consensus        13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~   79 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLV   79 (447)
T ss_pred             ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHHHhhheeeec--cceeeeeeeeccceEEEEEee
Confidence            6889999999997721           245555532211111112257888999997  665555 55788899999998


Q ss_pred             CCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC
Q 009380          267 SQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ  346 (536)
Q Consensus       267 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d  346 (536)
                      .    .+-...+.....++.+++|+|+|...|.+...|-.|.||.+.+.....+......+..++|+|++ ++.+..+.-
T Consensus        80 Q----pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg-~f~ai~sRr  154 (447)
T KOG4497|consen   80 Q----PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDG-QFCAILSRR  154 (447)
T ss_pred             c----ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCC-ceeeeeecc
Confidence            6    44555666777889999999999778888889999999999998887777667778999999999 676666543


Q ss_pred             CeEEEEEC---CCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380          347 GGLNIWDV---RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS  423 (536)
Q Consensus       347 g~i~i~d~---~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s  423 (536)
                      .....+++   ..-..+..+...+-..+.|.|+|+| +.+         .+||---.     ..+-.+...-.+..+.|+
T Consensus       155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~l---------aVwd~~Le-----ykv~aYe~~lG~k~v~ws  219 (447)
T KOG4497|consen  155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWL---------AVWDNVLE-----YKVYAYERGLGLKFVEWS  219 (447)
T ss_pred             cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cEE---------EEecchhh-----heeeeeeeccceeEEEec
Confidence            22222222   2223455566666678899999987 444         46663220     111122344678899999


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCCcceEEecc------------------------------------------------
Q 009380          424 PSGSSLATTSFDDTIGIWSGVNFENTSMIHHN------------------------------------------------  455 (536)
Q Consensus       424 p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~------------------------------------------------  455 (536)
                      |.+++|++|+.|+.++|.+--+.+....+.|.                                                
T Consensus       220 P~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~  299 (447)
T KOG4497|consen  220 PCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQ  299 (447)
T ss_pred             cccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhh
Confidence            99999999999999998763222211111000                                                


Q ss_pred             -------------CCCCceeeeeEEEEcCCCCEEEEEcCC--CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380          456 -------------NQTGRWISSFRAIWGWDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT  520 (536)
Q Consensus       456 -------------~~~~~~~~~~~~~~s~~g~~l~~gs~d--g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~  520 (536)
                                   .........-.++|++|..|+++-+.+  +.+-+||+...+....+...|  .+ ..+.|+|.. ..
T Consensus       300 ~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--pi-raf~WdP~~-pr  375 (447)
T KOG4497|consen  300 MTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--PI-RAFEWDPGR-PR  375 (447)
T ss_pred             hcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc--ce-eEEEeCCCC-ce
Confidence                         000001112236799999999887655  679999999987766654322  22 368999976 56


Q ss_pred             EEEEccCCeEEEEec
Q 009380          521 LAGATGGGQVYVWTS  535 (536)
Q Consensus       521 lasgs~Dg~v~iW~~  535 (536)
                      |+.+.....+++|..
T Consensus       376 L~vctg~srLY~W~p  390 (447)
T KOG4497|consen  376 LVVCTGKSRLYFWAP  390 (447)
T ss_pred             EEEEcCCceEEEEcC
Confidence            666666678999963

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=4.1e-17  Score=148.92  Aligned_cols=276  Identities=15%  Similarity=0.134  Sum_probs=183.9

Q ss_pred             cccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEE
Q 009380          210 KIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISG  287 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~  287 (536)
                      .+-..|.|+|||... +.....++++..++.++|........+.+++.||+|++||+....  ......+..|. .+..|
T Consensus        45 v~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~--e~a~~~~~~~~~~~f~~  122 (376)
T KOG1188|consen   45 VSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA--ESARISWTQQSGTPFIC  122 (376)
T ss_pred             EEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch--hhhheeccCCCCCcceE
Confidence            344567899998754 234456889999999999875456789999999999999998753  23444555555 56677


Q ss_pred             EEEecCCCCEEEEEEC----CCeEEEEECCCCeE-E--EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-
Q 009380          288 IVTQQYCLSKIFTSCY----DGLIRLMDAEKEVF-D--LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-  359 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~----dg~I~vwd~~~~~~-~--~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-  359 (536)
                      ++.+..+ +.+++|..    |-.|.+||++..+. .  ....|...|++++|+|.++++|++|+.||.|.+||+..... 
T Consensus       123 ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee  201 (376)
T KOG1188|consen  123 LDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE  201 (376)
T ss_pred             eeccCcC-CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence            7776565 67777753    67899999987654 2  23368899999999999999999999999999999986532 


Q ss_pred             --ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--c------ccCceeEEEEcc-CCCe
Q 009380          360 --ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--S------HKRAVHSAYFSP-SGSS  428 (536)
Q Consensus       360 --~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~------~~~~v~~l~~sp-~g~~  428 (536)
                        +.....|...|.++.|+..+-..+.+-+..++..+|++..+...........  .      .-..+-.. .+| ++..
T Consensus       202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~  280 (376)
T KOG1188|consen  202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDT  280 (376)
T ss_pred             hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcce
Confidence              3333358888999999987655788888899999999998753211111100  0      00111111 223 4445


Q ss_pred             EEEEeC-CCcEEEEeCCC---CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          429 LATTSF-DDTIGIWSGVN---FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       429 l~t~s~-dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      +++++. -+...++-+..   +........ .+.+..-.+-.+.|...+.++++|+.||.+.+|..
T Consensus       281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~-l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAI-LQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             EEEeccccCceeEEEeeecccccccCcccc-ccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            555554 55666655432   221111110 01111111111346667889999999999999985

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=4.2e-16  Score=154.21  Aligned_cols=271  Identities=12%  Similarity=0.137  Sum_probs=171.4

Q ss_pred             cccceEEecccccCcc-cccc-c-cCCceEEEEEEecCCccEEEEEe-CCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          212 EVGSCVDIGSLTLKPE-NIAR-I-MPGRITQMKFLPCSDVRMVVAGS-KLGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~~-~~~~-~-~~~~I~~v~~~p~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      ..++.|.+|++..... ...+ . +.+....++++|  ++++|++++ .++.|.+|++.... ....+... ...+....
T Consensus         9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~sp--d~~~lyv~~~~~~~i~~~~~~~~g-~l~~~~~~-~~~~~p~~   84 (330)
T PRK11028          9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISP--DKRHLYVGVRPEFRVLSYRIADDG-ALTFAAES-PLPGSPTH   84 (330)
T ss_pred             CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECC--CCCEEEEEECCCCcEEEEEECCCC-ceEEeeee-cCCCCceE
Confidence            5578899999843211 1111 1 346788899999  999887664 57899999997311 01112222 23345678


Q ss_pred             EEEecCCCCEEEEEEC-CCeEEEEECCC-Ce---EEEeecCCCceeEEEecCCCCCEEE-EEECCCeEEEEECCCCccce
Q 009380          288 IVTQQYCLSKIFTSCY-DGLIRLMDAEK-EV---FDLVYSSEYAVFSLSQQPNNVNTLY-FGEGQGGLNIWDVRSRKSAT  361 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~-dg~I~vwd~~~-~~---~~~~~~~~~~i~~l~~~~~~~~~l~-~g~~dg~i~i~d~~~~~~~~  361 (536)
                      ++|+|++ ++|+++++ ++.|.+|++++ +.   ......+...+.+++++|++ ++++ +...++.|.+||+.+...+.
T Consensus        85 i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g-~~l~v~~~~~~~v~v~d~~~~g~l~  162 (330)
T PRK11028         85 ISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN-RTLWVPCLKEDRIRLFTLSDDGHLV  162 (330)
T ss_pred             EEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC-CEEEEeeCCCCEEEEEEECCCCccc
Confidence            9999999 88877765 89999999974 22   22222333456788999998 5555 45566999999998643221


Q ss_pred             -----eEe-ccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCcceeec------ccCceeEEEEccCCCe
Q 009380          362 -----EWL-LHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDKPEPMKVLS------HKRAVHSAYFSPSGSS  428 (536)
Q Consensus       362 -----~~~-~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~~~~~~~~~------~~~~v~~l~~sp~g~~  428 (536)
                           ... ........+.|+|++. +++++. .++.|.+||+...............      +......+.|+|+|++
T Consensus       163 ~~~~~~~~~~~g~~p~~~~~~pdg~-~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~  241 (330)
T PRK11028        163 AQEPAEVTTVEGAGPRHMVFHPNQQ-YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH  241 (330)
T ss_pred             ccCCCceecCCCCCCceEEECCCCC-EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence                 111 1234567899999884 555555 4899999999742110101111111      1123346889999999


Q ss_pred             EEEEeC-CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcCC
Q 009380          429 LATTSF-DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISPA  491 (536)
Q Consensus       429 l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~  491 (536)
                      ++++.. ++.|.+|++........+......+....  .+.++|+|++|++++. ++.|.+|++.
T Consensus       242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~--~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPR--GFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCC--ceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            998864 78899999865432222211111221112  2678999999998775 7899999874

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=1.3e-17  Score=162.86  Aligned_cols=239  Identities=15%  Similarity=0.211  Sum_probs=177.1

Q ss_pred             CccEEEE--EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-------
Q 009380          247 DVRMVVA--GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-------  317 (536)
Q Consensus       247 ~~~~l~t--g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-------  317 (536)
                      +..++|+  .+..|.|.||++.....-...+..-.-....|+.+.|.|-....|+.++.||.|++|.+..+..       
T Consensus       590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP  669 (1012)
T KOG1445|consen  590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP  669 (1012)
T ss_pred             ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence            3445554  3556899999998653212222222224567999999998879999999999999999875422       


Q ss_pred             -EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380          318 -DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWD  396 (536)
Q Consensus       318 -~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd  396 (536)
                       ..+..|...|+++.|+|-..+.|++++.|-+|.+||+++++....+.+|.+.|.+++|+|+| +.+|+.+.||+|++|.
T Consensus       670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG-RRIATVCKDGTLRVYE  748 (1012)
T ss_pred             ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCC-cceeeeecCceEEEeC
Confidence             34556889999999999888899999999999999999999999999999999999999998 7999999999999999


Q ss_pred             CCCCCCCCCCcceee-c-ccCceeEEEEccCCCeEEEEeCCC----cEEEEeCCCCC--cceEEeccCCCCceeeeeEEE
Q 009380          397 LRSMATDKPEPMKVL-S-HKRAVHSAYFSPSGSSLATTSFDD----TIGIWSGVNFE--NTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       397 l~~~~~~~~~~~~~~-~-~~~~v~~l~~sp~g~~l~t~s~dg----~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      .++..    .++..- + -...-..|.|.-+|+++++.+.|.    .|.+||..+..  ++.+.......    ..+-..
T Consensus       749 Prs~e----~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap----s~LvP~  820 (1012)
T KOG1445|consen  749 PRSRE----QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP----SPLVPH  820 (1012)
T ss_pred             CCCCC----CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC----cccccc
Confidence            99853    222211 1 123335678888999999998775    58899977543  33333222111    122245


Q ss_pred             EcCCCC-EEEEEcCCCcEEEEcCCccc
Q 009380          469 WGWDDS-CVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       469 ~s~~g~-~l~~gs~dg~I~v~d~~~~~  494 (536)
                      +.+|.. +|++|-.|..|.+|.+-...
T Consensus       821 YD~Ds~~lfltGKGD~~v~~yEv~~es  847 (1012)
T KOG1445|consen  821 YDYDSNVLFLTGKGDRFVNMYEVIYES  847 (1012)
T ss_pred             ccCCCceEEEecCCCceEEEEEecCCC
Confidence            667755 47788889999999886543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=2.2e-17  Score=158.48  Aligned_cols=264  Identities=16%  Similarity=0.159  Sum_probs=191.5

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEe-cccccCccccccccCCceEEEEE-Eec-----CCccEEEEE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDI-GSLTLKPENIARIMPGRITQMKF-LPC-----SDVRMVVAG  254 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~l-w~~~~~~~~~~~~~~~~I~~v~~-~p~-----~~~~~l~tg  254 (536)
                      |..-|.||.++.....+..+           .|..+.+ |++..+...+.+..++-|....+ -|.     ...+.++.+
T Consensus        13 ~~e~vc~v~w~~~eei~~~~-----------dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~   81 (737)
T KOG1524|consen   13 NSEKVCCVDWSSNEEIYFVS-----------DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC   81 (737)
T ss_pred             cceeEEeecccccceEEEec-----------cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE
Confidence            44455677777777766644           2233333 45444444444444443333322 110     122578888


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      +.||.+.|.+-.     +.....+..|.+.|.+-.|+|+| .-|++++.||.|++|.-..--...+.....+|.|++|.|
T Consensus        82 s~DGkf~il~k~-----~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   82 SNDGRFVILNKS-----ARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             cCCceEEEeccc-----chhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            899999998765     56667888999999999999999 999999999999999965543334455678999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      +..+.+++.+  +.+.|=-+.....+-.++.|.+-|.++.|++.+ +++++|++|-..+|||-..     ........|.
T Consensus       156 ~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~e  227 (737)
T KOG1524|consen  156 NSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG-----ANLFTSAAEE  227 (737)
T ss_pred             CCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccC-----cccccCChhc
Confidence            9966666544  467777777666788899999999999999977 7999999999999999764     2455566899


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      .+|++++|+|+ ..++.++. +++++=..             ..|   +++.++||+||..+++|+..|.+.+-
T Consensus       228 y~ITSva~npd-~~~~v~S~-nt~R~~~p-------------~~G---SifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  228 YAITSVAFNPE-KDYLLWSY-NTARFSSP-------------RVG---SIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             cceeeeeeccc-cceeeeee-eeeeecCC-------------Ccc---ceEEEEEcCCCceeeccccCceEEEe
Confidence            99999999999 66666664 34441111             122   44568899999999999999876553

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=1.6e-18  Score=174.14  Aligned_cols=289  Identities=16%  Similarity=0.165  Sum_probs=222.3

Q ss_pred             cccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCc
Q 009380          170 CKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDV  248 (536)
Q Consensus       170 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~  248 (536)
                      ++..++...+.||.+.|.|+.|...|+.+.          +++.|..+++|.+..... .-..+|.+.|+.++.+.  +.
T Consensus       177 vqkmk~ikrLlgH~naVyca~fDrtg~~Ii----------tgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~--~n  244 (1113)
T KOG0644|consen  177 VQKMKNIKRLLGHRNAVYCAIFDRTGRYII----------TGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS--NN  244 (1113)
T ss_pred             HHHHHHHHHHHhhhhheeeeeeccccceEe----------ecCccceeeeeeccchhhhccCCCCccccchhccch--hh
Confidence            355677788999999999999999999888          457778899999855433 34689999999999998  88


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-----ecC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-----YSS  323 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-----~~~  323 (536)
                      .++++++.|..|++|.+.+    +.++..+.+|++.|++|+|+|-.     +.+.||++++||.+-......     +..
T Consensus       245 ~~iaaaS~D~vIrvWrl~~----~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~  315 (1113)
T KOG0644|consen  245 TMIAAASNDKVIRVWRLPD----GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTE  315 (1113)
T ss_pred             hhhhhcccCceEEEEecCC----CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCccc
Confidence            8999999999999999998    78899999999999999999953     778899999999882211111     123


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD  403 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~  403 (536)
                      ..-+.++-|..++ .-+++|+.|+.-..|.+..-.      .+...+.-+.++.+-..+.+++-.+-.+++|++-++.  
T Consensus       316 ~~~~~s~~~~~~~-~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~--  386 (1113)
T KOG0644|consen  316 KDLVDSILFENNG-DRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ--  386 (1113)
T ss_pred             ccceeeeeccccc-cccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccch--
Confidence            3556667776666 678899999888887654321      2222222233333333577777778899999999864  


Q ss_pred             CCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC
Q 009380          404 KPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT  482 (536)
Q Consensus       404 ~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d  482 (536)
                        ......+|...+..+.++| +.....+++.||.+.|||+..+.++......  .   ...+...||++|..++....-
T Consensus       387 --l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h---~kl~d~kFSqdgts~~lsd~h  459 (1113)
T KOG0644|consen  387 --LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--H---GKLVDGKFSQDGTSIALSDDH  459 (1113)
T ss_pred             --hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--c---ceeeccccCCCCceEecCCCC
Confidence              4555668999999999999 5566778899999999999988888776522  2   233447899999999998888


Q ss_pred             CcEEEEcCCcccc
Q 009380          483 RTVEVISPAQRRS  495 (536)
Q Consensus       483 g~I~v~d~~~~~~  495 (536)
                      |.++|+....++.
T Consensus       460 gql~i~g~gqs~s  472 (1113)
T KOG0644|consen  460 GQLYILGTGQSKS  472 (1113)
T ss_pred             CceEEeccCCCcc
Confidence            9999987755543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=2.5e-16  Score=164.75  Aligned_cols=258  Identities=13%  Similarity=0.221  Sum_probs=180.8

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      .++.|...|..++.++. ++.++++|+.||+|++|+...-...   .....++..-...+.++...+.+ +.++.++.||
T Consensus      1043 hL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAVSTKDG 1120 (1431)
T ss_pred             hhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEEEcCCC
Confidence            34556888889998872 4599999999999999999764321   23334555567889999999998 9999999999


Q ss_pred             eEEEEECCCCeE-------EEee--cCCCceeE-EEecCCCCC-EEEEEECCCeEEEEECCCCccceeEe--ccCCCeEE
Q 009380          306 LIRLMDAEKEVF-------DLVY--SSEYAVFS-LSQQPNNVN-TLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINT  372 (536)
Q Consensus       306 ~I~vwd~~~~~~-------~~~~--~~~~~i~~-l~~~~~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~  372 (536)
                      .|++.+++....       ....  ...+.+.+ -+|...... .++.++..+.|..||+++......++  ...+.|++
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence            999999876211       1111  12233333 344333323 78888999999999999877665554  44578999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCC---CeEEEEe--CCCcEEEEeCCCC
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSG---SSLATTS--FDDTIGIWSGVNF  446 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g---~~l~t~s--~dg~I~iwd~~~~  446 (536)
                      ++.+|.+ ++++.|...|.+.+||+|-..    .+... .++..+|+.+..+|-.   ...++++  ..+.|.+|++.++
T Consensus      1201 i~idp~~-~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1201 IVIDPWC-NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             EEecCCc-eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            9999976 799999999999999999742    22222 2566888999888832   3454444  4677999999988


Q ss_pred             CcceEEeccC---------CC-----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          447 ENTSMIHHNN---------QT-----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       447 ~~~~~~~~~~---------~~-----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      .+..++....         +.     ...+....+.+...+.++++|+.|..|+.||....
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            7666654320         11     11112222334445668999999999999998643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.75  E-value=1.6e-16  Score=148.09  Aligned_cols=289  Identities=12%  Similarity=0.189  Sum_probs=198.5

Q ss_pred             cceeeeecCCCCc-ccccccccccccccccccceEEecccccCcc----------ccccccCCceEEEEEEecCCccEEE
Q 009380          184 NGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE----------NIARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       184 ~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~----------~~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      ..|..+.|.+... .++          +++.|..|+||.+...+.          ..+..|...|++|.|+|  +|++||
T Consensus        14 ~pv~s~dfq~n~~~~la----------T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLA   81 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLA----------TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLA   81 (434)
T ss_pred             CceEEEEeccCccccee----------cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeee
Confidence            4555555555554 444          678889999998743221          23456899999999999  999999


Q ss_pred             EEeCCCcEEEEECCCC------C------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe
Q 009380          253 AGSKLGNITFWNLDSQ------Q------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV  320 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~------~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~  320 (536)
                      +|+.+|.|.+|.....      .      +.......+.+|...|..++|+|++ .++++++.|.++++||+..+.....
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~l~~~  160 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQLLAI  160 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccceeEee
Confidence            9999999999987610      0      0123445678899999999999999 9999999999999999999987665


Q ss_pred             e-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-------------------ccCC----CeEEEEEe
Q 009380          321 Y-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-------------------LHEA----RINTIDFN  376 (536)
Q Consensus       321 ~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------------------~h~~----~i~~i~~~  376 (536)
                      . .|...+..++|.|-+ +++++-+.|...+.+++...+.++...                   -|..    -...++|+
T Consensus       161 ~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT  239 (434)
T KOG1009|consen  161 LDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT  239 (434)
T ss_pred             ccccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC
Confidence            5 688899999999987 788887777766666655433221111                   0222    23467889


Q ss_pred             cCCCCEEEEEeC----CC-----cEEEEeCCCCCCCCCCcceeecccCceeEEEEcc------------------CCCeE
Q 009380          377 PRNPNIMATSST----DG-----TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP------------------SGSSL  429 (536)
Q Consensus       377 p~~~~~l~s~s~----dg-----~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp------------------~g~~l  429 (536)
                      |+| .++++.+.    .+     +.++|+-...+   .....+......+..+.|+|                  -+-.+
T Consensus       240 PdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~---rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvf  315 (434)
T KOG1009|consen  240 PDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLK---RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVF  315 (434)
T ss_pred             CCC-cEEEcccceeeeCCceeeceeEeecccccc---CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEE
Confidence            988 57776542    12     23455433321   22333334444555555544                  12234


Q ss_pred             EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      +.++ .+.|.|||..+..++..+...    +......++|++||.+|++.|.||...+..+...++
T Consensus       316 aiAt-~~svyvydtq~~~P~~~v~ni----hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  316 AIAT-KNSVYVYDTQTLEPLAVVDNI----HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             EEee-cceEEEeccccccceEEEeee----eeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence            4555 456999999888877766321    122344588999999999999999988877766544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.75  E-value=1.1e-16  Score=163.63  Aligned_cols=236  Identities=13%  Similarity=0.079  Sum_probs=163.8

Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEec
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQ  333 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~  333 (536)
                      +..|.+||.+.     .....+..|...+.+..|+|+| +.|+.++.+   ..|++||+.++....+....+....++|+
T Consensus       183 ~~~i~i~d~dg-----~~~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDG-----FNQFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCC-----CCceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence            46899999874     3345667788889999999999 888877654   36999999988655554444455678999


Q ss_pred             CCCCCEEEEE-ECCCeEEE--EECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380          334 PNNVNTLYFG-EGQGGLNI--WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       334 ~~~~~~l~~g-~~dg~i~i--~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                      |++ +.|+++ ..+|.+.|  ||+.++. ...+..+...+....|+|++..+++++..+|...||++.....    ....
T Consensus       257 PDG-~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~----~~~~  330 (429)
T PRK01742        257 PDG-SRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG----GASL  330 (429)
T ss_pred             CCC-CEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CeEE
Confidence            998 555554 56776555  4665554 4555667777889999999865555666678889998765321    1122


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      ..+..  ..+.|+|+|++|+.++.++ +.+||+.+++........  .     ...+.|+|+|++|+.++.++.+.+|.+
T Consensus       331 l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~-----~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        331 VGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--L-----DESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             ecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--C-----CCCceECCCCCEEEEEEcCCCceEEEE
Confidence            23333  4578999999998888765 666999877643322111  1     123679999999999999988887775


Q ss_pred             --CccccceeccCCceeeeeeeEeecCC
Q 009380          491 --AQRRSVATLQSPYISAIPCRFHAHPH  516 (536)
Q Consensus       491 --~~~~~~~~l~~~~~~~~~~~~~~~p~  516 (536)
                        .++..+..+..+....  ...+|+|.
T Consensus       401 ~~~~G~~~~~l~~~~g~~--~~p~wsp~  426 (429)
T PRK01742        401 VSADGRFKARLPGSDGQV--KFPAWSPY  426 (429)
T ss_pred             EECCCCceEEccCCCCCC--CCcccCCC
Confidence              3566777776544322  35778874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.5e-15  Score=154.60  Aligned_cols=312  Identities=13%  Similarity=0.141  Sum_probs=213.0

Q ss_pred             eEEecccccC-----ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380          216 CVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT  290 (536)
Q Consensus       216 ~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  290 (536)
                      .+.+|.....     ...+...|.-.++++++||  +++++|+|..||.|.+|.--...........+.=|...|.+++|
T Consensus       182 ~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f  259 (792)
T KOG1963|consen  182 KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF  259 (792)
T ss_pred             eEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence            4556655331     2233345666799999999  99999999999999999755422224556677779999999999


Q ss_pred             ecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-----
Q 009380          291 QQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-----  365 (536)
Q Consensus       291 ~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----  365 (536)
                      +++| .+|++|+..|.+.+|.+.+++...+-.-.++|..+.++|++ .+.++...|..|.+....+.....++.+     
T Consensus       260 S~~G-~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~  337 (792)
T KOG1963|consen  260 SSDG-AYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPT  337 (792)
T ss_pred             ecCC-ceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCC
Confidence            9999 99999999999999999999866666778999999999998 7888888899999998766544333321     


Q ss_pred             ------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc-eee------cccCceeEEEEccCCCeEEEE
Q 009380          366 ------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM-KVL------SHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       366 ------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~------~~~~~v~~l~~sp~g~~l~t~  432 (536)
                            ..+-.+.++++|. .+.++-.+..|.|.+||+-+.+....... ...      .+.-.++.++.+-.|.+++|.
T Consensus       338 ~~~k~~~~~l~t~~~idpr-~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~  416 (792)
T KOG1963|consen  338 PSTKTRPQSLTTGVSIDPR-TNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL  416 (792)
T ss_pred             ccccccccccceeEEEcCC-CCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence                  2344678899993 36788888899999999988542110000 000      123457788888889999987


Q ss_pred             eC--------CC--cEEEEeCCCCCcceEE--eccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceec
Q 009380          433 SF--------DD--TIGIWSGVNFENTSMI--HHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       433 s~--------dg--~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l  499 (536)
                      -.        ||  .+++|-.........+  ....+++......+. .++. ...+++++.||.++||-+...+.+..-
T Consensus       417 E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~-~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~  495 (792)
T KOG1963|consen  417 EARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIF-LNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK  495 (792)
T ss_pred             eeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEE-ecCcccceeEEeccCCeEEEEEEecccccCcC
Confidence            42        33  4788876544433333  223344433333222 2333 337889999999999998544332221


Q ss_pred             c------C---CceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          500 Q------S---PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       500 ~------~---~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .      .   .|...+ .+.+|+- || -+++.+.|+.|.+||.+
T Consensus       496 ~s~W~c~~i~sy~k~~i-~a~~fs~-dG-slla~s~~~~Itiwd~~  538 (792)
T KOG1963|consen  496 SSNWTCKAIGSYHKTPI-TALCFSQ-DG-SLLAVSFDDTITIWDYD  538 (792)
T ss_pred             ccceEEeeeeccccCcc-cchhhcC-CC-cEEEEecCCEEEEecCC
Confidence            1      1   112222 2345553 54 67777788999999853

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-16  Score=145.44  Aligned_cols=295  Identities=12%  Similarity=0.131  Sum_probs=208.7

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-------Cccccc-cccCCceEEEEEEec
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-------KPENIA-RIMPGRITQMKFLPC  245 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-------~~~~~~-~~~~~~I~~v~~~p~  245 (536)
                      -.++-+.+|..+|.+++|+..++.|+          +++.|..+.||++..       +|..+. ..|...|.|++|.- 
T Consensus        47 ~~qKD~~~H~GCiNAlqFS~N~~~L~----------SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-  115 (609)
T KOG4227|consen   47 FCQKDVREHTGCINALQFSHNDRFLA----------SGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-  115 (609)
T ss_pred             hhhhhhhhhccccceeeeccCCeEEe----------ecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-
Confidence            34566789999999999999999999          458888999999732       333332 33568999999998 


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eEEE
Q 009380          246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDL  319 (536)
Q Consensus       246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~  319 (536)
                       ...+|.+|..+++|.+.|+.+    .+.+..+.  ...+.|..+..+|.. +.|++.+.++.|.+||.+..    .+..
T Consensus       116 -~N~~~~SG~~~~~VI~HDiEt----~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  116 -ENRFLYSGERWGTVIKHDIET----KQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             -CCeeEecCCCcceeEeeeccc----ceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceee
Confidence             889999999999999999997    33343332  234589999999997 99999999999999999764    3444


Q ss_pred             eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEe---cc---CCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          320 VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWL---LH---EARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       320 ~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~---~h---~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      .........++.|+|..+.+|++.+..+.+.+||++.... +....   +.   ...-.++.|+|.|. .|++--....-
T Consensus       190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~~~P  268 (609)
T KOG4227|consen  190 PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN-QFMSIRRGKCP  268 (609)
T ss_pred             ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC-eehhhhccCCC
Confidence            4456678889999999999999999999999999987643 32221   11   12235788999884 55554444455


Q ss_pred             EEEeCCCCCCCCCCcceeeccc-------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc---eEEeccC------
Q 009380          393 CIWDLRSMATDKPEPMKVLSHK-------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---SMIHHNN------  456 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~-------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~---~~~~~~~------  456 (536)
                      .+||+-+..    ..+-...|.       ..+.+++|.-+.. +++|+.+-.|++|.+..-...   ..+.|..      
T Consensus       269 ~~~D~~S~R----~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~  343 (609)
T KOG4227|consen  269 LYFDFISQR----CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE  343 (609)
T ss_pred             EEeeeeccc----ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchh
Confidence            678877621    111112232       3567788876554 999999999999987522111   1111100      


Q ss_pred             ---------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          457 ---------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       457 ---------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                               ..++....-.+.|+|...+|++.+-.+.+++|...
T Consensus       344 ~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  344 IFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             heecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence                     01111112236789998889999999999999753

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=7.6e-16  Score=139.54  Aligned_cols=211  Identities=16%  Similarity=0.183  Sum_probs=169.4

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      +....+|+|.+|++  |+..+|.+-.+..|.||....... .+..++++.|...|++|+|+|.. +.|++|+.|..-+||
T Consensus         7 ~~~~~pitchAwn~--drt~iAv~~~~~evhiy~~~~~~~-w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw   82 (361)
T KOG1523|consen    7 HRLLEPITCHAWNS--DRTQIAVSPNNHEVHIYSMLGADL-WEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW   82 (361)
T ss_pred             eeccCceeeeeecC--CCceEEeccCCceEEEEEecCCCC-ceeceehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence            33467899999999  999999999999999999876432 56788999999999999999998 999999999999999


Q ss_pred             EC-CCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--c--eeEeccCCCeEEEEEecCCCCE
Q 009380          311 DA-EKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--A--TEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       311 d~-~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--~--~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      .. ..++.   ..+..++...+++.|+|.. +.|++|+....|.||-++..+-  +  +.-..+...|++++|+|.+ -+
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VL  160 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VL  160 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ce
Confidence            98 44443   3456788999999999998 8999999999999998775432  1  1223577889999999965 79


Q ss_pred             EEEEeCCCcEEEEeCC-----CCCC--------CCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          383 MATSSTDGTACIWDLR-----SMAT--------DKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~-----~~~~--------~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      +++|+.|+.++||..-     ....        ....++... ...+.|..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       161 laaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  161 LAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            9999999999998632     1000        000111112 456789999999999999999999999999976654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=1.6e-16  Score=152.68  Aligned_cols=268  Identities=15%  Similarity=0.169  Sum_probs=183.9

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEe-cCCCCEEEEEECCCeEEEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQ-QYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~-~~~~~~l~s~s~dg~I~vw  310 (536)
                      |...|.|+.|+.  +...+.+++.+..+.-|++.....+ ....-.+......+....-- ..+...|+.++.||.+.+.
T Consensus        13 ~~e~vc~v~w~~--~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   13 NSEKVCCVDWSS--NEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             cceeEEeecccc--cceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            455667999987  5566666665544455555542110 00000110000001000000 1123678999999999998


Q ss_pred             ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          311 DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       311 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      +-.......+..|.+.+.+-.|+|+| .-|++++.||.|++|. ++|-...++.....+|.|++|.|+..+++.+.+  +
T Consensus        91 ~k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~  166 (737)
T KOG1524|consen   91 NKSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--G  166 (737)
T ss_pred             cccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--C
Confidence            87665555667899999999999999 7899999999999998 566666666667889999999998877777765  4


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG  470 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  470 (536)
                      .+.|=.+..    +..++....|.+-|.++.|++..+++++|+.|-..+|||... ..+..-   ......+++  ++|.
T Consensus       167 h~~IKpL~~----n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S---~~~ey~ITS--va~n  236 (737)
T KOG1524|consen  167 HISIKPLAA----NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTS---AAEEYAITS--VAFN  236 (737)
T ss_pred             eEEEeeccc----ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccC---Chhccceee--eeec
Confidence            566655555    237788889999999999999999999999999999999643 333222   122223444  8899


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                      |+ ..++.++.+ +++            +.....+.+ ..++|+| ||..+++|+..|.|.+
T Consensus       237 pd-~~~~v~S~n-t~R------------~~~p~~GSi-fnlsWS~-DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  237 PE-KDYLLWSYN-TAR------------FSSPRVGSI-FNLSWSA-DGTQATCGTSTGQLIV  282 (737)
T ss_pred             cc-cceeeeeee-eee------------ecCCCccce-EEEEEcC-CCceeeccccCceEEE
Confidence            99 667777653 344            333333333 5689999 7899999999998764

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=8.4e-18  Score=169.02  Aligned_cols=242  Identities=20%  Similarity=0.234  Sum_probs=189.5

Q ss_pred             CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI  351 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i  351 (536)
                      +.+..+.+|...|.|+.|...| .++++|+.|..++||..+++.+. ...+|.+.|+.++.+.++ .++++++.|..|++
T Consensus       181 k~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEE
Confidence            3445677999999999999999 99999999999999999987654 556899999999999887 78899999999999


Q ss_pred             EECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-CCCCcceeecccCceeEEEEccCCCeEE
Q 009380          352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-DKPEPMKVLSHKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       352 ~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-~~~~~~~~~~~~~~v~~l~~sp~g~~l~  430 (536)
                      |-+.++.++..+.+|++.|++|+|+|-     .+.+.||++++||.+-... ..+.+... .....+.++.|..++..++
T Consensus       259 Wrl~~~~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~~~-~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPLKF-TEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             EecCCCchHHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCCCc-ccccceeeeeccccccccc
Confidence            999999999999999999999999993     3777899999999982110 01111111 2346778888988999999


Q ss_pred             EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeee
Q 009380          431 TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPC  509 (536)
Q Consensus       431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~  509 (536)
                      |++.|+.-..|.+.........        .+.   +.++.+ ..+.+++-.+-.+.+|++.+|..++.+.+|.....  
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~~~--------lif---~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~y--  399 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRSNL--------LIF---VTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVY--  399 (1113)
T ss_pred             cccCCcccccchhhHhhhhccc--------eEE---EeccccccccceeeeeeeEeeeeecccchhhhhhccccccee--
Confidence            9999999888876432111100        000   111212 24566666778899999999988888877655544  


Q ss_pred             eEeecCCCCCEEEEEccCCeEEEEec
Q 009380          510 RFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       510 ~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++.+||.+.....+++.||...|||+
T Consensus       400 vLd~Hpfn~ri~msag~dgst~iwdi  425 (1113)
T KOG0644|consen  400 VLDVHPFNPRIAMSAGYDGSTIIWDI  425 (1113)
T ss_pred             eeeecCCCcHhhhhccCCCceEeeec
Confidence            68999999888899999999999996

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1.5e-16  Score=153.33  Aligned_cols=218  Identities=16%  Similarity=0.235  Sum_probs=164.8

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-ccCCCCEEEEEEecCC-CCEEEEE
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-RTHLGPISGIVTQQYC-LSKIFTS  301 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~-~~~l~s~  301 (536)
                      +..+..+.+|.+.|+|+.|+.  +|.+|++|+.|-.+.|||.-.    .+.++.+ .+|...|.++.|.|.. ..++++|
T Consensus        40 L~lE~eL~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~----~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg  113 (758)
T KOG1310|consen   40 LDLEAELTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFE----YKLLHSISTGHTANIFSVKFVPYTNNRIVLSG  113 (758)
T ss_pred             cchhhhhccccceecceeecC--CCCEEeecCCcceEEeecchh----cceeeeeecccccceeEEeeeccCCCeEEEec
Confidence            444566899999999999999  999999999999999999985    5555544 5899999999999963 3678999


Q ss_pred             ECCCeEEEEECCCCe-----------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc----------
Q 009380          302 CYDGLIRLMDAEKEV-----------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA----------  360 (536)
Q Consensus       302 s~dg~I~vwd~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~----------  360 (536)
                      +.|..|+++|+...+           ......|...|..|+..|++++.+.+++.||+|+-||++.....          
T Consensus       114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l  193 (758)
T KOG1310|consen  114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL  193 (758)
T ss_pred             cCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence            999999999998421           11223467788899999999999999999999999999964221          


Q ss_pred             eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC--------CCC-----Ccceee--ccc-----------
Q 009380          361 TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT--------DKP-----EPMKVL--SHK-----------  414 (536)
Q Consensus       361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~--------~~~-----~~~~~~--~~~-----------  414 (536)
                      ..+....-...|+..+|..+++|++|+.|-..++||.|....        ...     .+...+  +|-           
T Consensus       194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~  273 (758)
T KOG1310|consen  194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYI  273 (758)
T ss_pred             HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccce
Confidence            111122235678999999999999999999999999543210        000     011111  221           


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      ..++.+.|+|+|.-|++.-....|++||+...+
T Consensus       274 ~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  274 TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            125778999999877776666679999986544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=6.8e-15  Score=149.91  Aligned_cols=279  Identities=14%  Similarity=0.194  Sum_probs=200.2

Q ss_pred             EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC--CEEEEEECCCeEEEEECCCCeE
Q 009380          240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL--SKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      -.|++  |+++++.... ..|.||...+    +.++..+..|..++..+.+.|...  .++++++.||.|++||...+..
T Consensus        22 avfSn--D~k~l~~~~~-~~V~VyS~~T----g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   22 AVFSN--DAKFLFLCTG-NFVKVYSTAT----GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL   94 (792)
T ss_pred             ccccc--CCcEEEEeeC-CEEEEEecch----HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence            35777  8888877664 5899999998    788999999999999999998875  4678999999999999987765


Q ss_pred             EEeecCCCceeE-----------------------------------------------------------EEecCCCCC
Q 009380          318 DLVYSSEYAVFS-----------------------------------------------------------LSQQPNNVN  338 (536)
Q Consensus       318 ~~~~~~~~~i~~-----------------------------------------------------------l~~~~~~~~  338 (536)
                      ...+....++..                                                           +.+++.+ .
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g-e  173 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG-E  173 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc-e
Confidence            444433222222                                                           2222222 1


Q ss_pred             EEEEEECCCeEEEEECCCCccc---ee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          339 TLYFGEGQGGLNIWDVRSRKSA---TE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       339 ~l~~g~~dg~i~i~d~~~~~~~---~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      +.+ ...+..+.+|+...+...   +. -..|...+++++++|.+ +++|+|..||.|.+|.--..+........+.=|.
T Consensus       174 ~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~  251 (792)
T KOG1963|consen  174 FKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHH  251 (792)
T ss_pred             EEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecc
Confidence            222 222335666766653310   00 01466778999999976 8999999999999996443222233444555689


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      ..|++++|+++|.+|++|+..+.+.+|.+.+++... ++   ..+..+  +.+.++||+.+.+....|+.|.+....+..
T Consensus       252 ~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf-LP---RLgs~I--~~i~vS~ds~~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  252 DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF-LP---RLGSPI--LHIVVSPDSDLYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             cccceeEEecCCceEeecccceEEEEEeecCCCccc-cc---ccCCee--EEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence            999999999999999999999999999999888333 22   222233  337789999999999999999999887765


Q ss_pred             cceeccCCc---------eeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          495 SVATLQSPY---------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       495 ~~~~l~~~~---------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ...++.+..         .......+++.| ..+.++-.+..|.|.+||+
T Consensus       326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDL  374 (792)
T ss_pred             hhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEec
Confidence            555444321         123345677888 4478889999999999986

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.71  E-value=3.1e-16  Score=138.33  Aligned_cols=288  Identities=12%  Similarity=0.112  Sum_probs=194.8

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-ccccc-ccCCceEEEEEEecCCccEEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIAR-IMPGRITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~-~~~~~I~~v~~~p~~~~~~l~t  253 (536)
                      .+.+++|...|.++.|...++++..           ...|.|.+|.+.... ....+ .+...|+.+.--|  + ..+.+
T Consensus         7 ~fvLRp~~~~v~s~~fqa~~rL~sg-----------~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p--~-d~l~t   72 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQANERLMSG-----------LSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP--N-DSLDT   72 (323)
T ss_pred             eeEeccccchheehhhccchhhhcc-----------cccceEEEEEeecCccchhhhhhccceeeceeecC--C-cchhh
Confidence            3567799999999999999996653           456789999985543 23344 5688899999988  5 67889


Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-----C---CEEEEEECCC-eEEEEECCCCeEEEee---
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-----L---SKIFTSCYDG-LIRLMDAEKEVFDLVY---  321 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----~---~~l~s~s~dg-~I~vwd~~~~~~~~~~---  321 (536)
                      -+.|+.+.+|++...    .   ....|+-.++++.|.+..     .   ..++.=+... .+.+-|........+.   
T Consensus        73 qgRd~~L~lw~ia~s----~---~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~  145 (323)
T KOG0322|consen   73 QGRDPLLILWTIAYS----A---FISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS  145 (323)
T ss_pred             cCCCceEEEEEccCc----c---eEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence            999999999999852    1   122344455555555431     0   0111111100 0122222211111111   


Q ss_pred             --cCCCceeEEEecCCCC--CEEEEEECCCeEEEEECCCC----------ccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          322 --SSEYAVFSLSQQPNNV--NTLYFGEGQGGLNIWDVRSR----------KSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       322 --~~~~~i~~l~~~~~~~--~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                        ...+.++|..+.....  -++++|..+|.|.+||+.++          +.......|..+|.++.+.+.- ..=++|+
T Consensus       146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgg  224 (323)
T KOG0322|consen  146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGG  224 (323)
T ss_pred             hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCC
Confidence              2235677776543322  25667889999999999987          3334445799999999998743 3446777


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                      .+..+..|.+......-+......-.+-.|..+..-||++.++|++.|+.|+||+.+++.++..+..+..     .+.++
T Consensus       225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~v  299 (323)
T KOG0322|consen  225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAV  299 (323)
T ss_pred             ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEE
Confidence            7778899988764221112222223456788999999999999999999999999999999988864432     23347


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEcC
Q 009380          468 IWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       468 ~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      +|+|+-..++++++|+.|.+|++
T Consensus       300 Afspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  300 AFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EeCCCCchhhhccCCceEEeeec
Confidence            89999999999999999999986

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.9e-14  Score=132.43  Aligned_cols=272  Identities=12%  Similarity=0.158  Sum_probs=180.5

Q ss_pred             cccccceEEecccccCccccc-cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC----------CceEEe
Q 009380          210 KIEVGSCVDIGSLTLKPENIA-RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED----------NGIYLF  278 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~-~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~----------~~~~~~  278 (536)
                      .+..|-.|++|+-......++ ......|+|++|-|. .+..|+.|.. +-|.||..+......          ..+...
T Consensus       115 va~nddvVriy~ksst~pt~Lks~sQrnvtclawRPl-saselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~  192 (445)
T KOG2139|consen  115 VATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPL-SASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQD  192 (445)
T ss_pred             hhccCcEEEEeccCCCCCceecchhhcceeEEEeccC-Ccceeeeeec-ceeEEEEcCcccccccccccccccchhheeC
Confidence            456677899998655433333 334678999999996 4567777776 569999887432111          123344


Q ss_pred             ccCCCCEEEEEEecCCCCEEEEEEC-CCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380          279 RTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       279 ~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~  356 (536)
                      .+| .+|+++.|++|| ..+++++. |..|.|||..++....+. ..-+.++-+.|+|++ .+|++++-|+..++|+...
T Consensus       193 pgh-~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q  269 (445)
T KOG2139|consen  193 PGH-NPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQ  269 (445)
T ss_pred             CCC-ceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcc
Confidence            556 789999999999 88888886 578999999998776665 455788999999999 8999999999999997665


Q ss_pred             CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC--CCC------Cc--------ceeec----ccCc
Q 009380          357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT--DKP------EP--------MKVLS----HKRA  416 (536)
Q Consensus       357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~--~~~------~~--------~~~~~----~~~~  416 (536)
                      ......+....+.|..-+|+|+|..+|++++..-  .+|.+.-...  ...      ..        .....    ..+.
T Consensus       270 ~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge  347 (445)
T KOG2139|consen  270 SWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE  347 (445)
T ss_pred             cceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence            4444455555669999999999977777776444  4444332110  000      00        00011    2467


Q ss_pred             eeEEEEccCCCeEEEEeCCC--------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc---CCCCEEEEEcCCCcE
Q 009380          417 VHSAYFSPSGSSLATTSFDD--------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG---WDDSCVFIGNMTRTV  485 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~g~~l~~gs~dg~I  485 (536)
                      +.+++|+|.|.+|++.-..+        .|.+||.+..-...........+..-..  +.|+   .++.+|.++=..|.+
T Consensus       348 aq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~--IsF~pl~n~g~lLsiaWsTGri  425 (445)
T KOG2139|consen  348 AQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAY--ISFGPLKNEGRLLSIAWSTGRI  425 (445)
T ss_pred             cceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCce--EEeeecccCCcEEEEEeccCce
Confidence            89999999999999976543        3777887654444333211111111111  2233   356677777666777


Q ss_pred             EEEcC
Q 009380          486 EVISP  490 (536)
Q Consensus       486 ~v~d~  490 (536)
                      .-|++
T Consensus       426 q~ypl  430 (445)
T KOG2139|consen  426 QRYPL  430 (445)
T ss_pred             Eeeee
Confidence            76654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.7e-16  Score=151.01  Aligned_cols=308  Identities=13%  Similarity=0.140  Sum_probs=229.7

Q ss_pred             ccccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc--cccccccCCceEEEEEEecC
Q 009380          169 ACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP--ENIARIMPGRITQMKFLPCS  246 (536)
Q Consensus       169 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~--~~~~~~~~~~I~~v~~~p~~  246 (536)
                      .++++.+...|.+|..+|..+.|...|..++          +++.|-.+.+||+....  .....+|...|....|.|..
T Consensus       128 ~vqr~~l~~kL~~H~GcVntV~FN~~Gd~l~----------SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s  197 (559)
T KOG1334|consen  128 FVQRLRLQKKLNKHKGCVNTVHFNQRGDVLA----------SGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS  197 (559)
T ss_pred             HHHHhhhhhcccCCCCccceeeecccCceee----------ccCccceEEeehhhccCcccccccccccchhhhhccCCC
Confidence            3457888899999999999999999999999          45778899999985432  23456788899999999987


Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee----c
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY----S  322 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~----~  322 (536)
                      +..-|++++.||+|++=.+..... ......+..|.++|.-++.-|+.+..|++++.|+.+.-+|++.+.....+    .
T Consensus       198 ~d~ti~~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~  276 (559)
T KOG1334|consen  198 GDRTIVTSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA  276 (559)
T ss_pred             CCcCceeccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc
Confidence            778899999999999988765321 23356677899999999999999999999999999999999876433222    2


Q ss_pred             CCC---ceeEEEecCCCCCEEEEEECCCeEEEEECCCCc------cceeEec------cCCCeEEEEEecCCCCEEEEEe
Q 009380          323 SEY---AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK------SATEWLL------HEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       323 ~~~---~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~------~~~~~~~------h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +..   ...+++..|.+.+.+++|+.|-.+++||.+.-.      .+..+..      ..-.|+++.|+.++..+|++- 
T Consensus       277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-  355 (559)
T KOG1334|consen  277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-  355 (559)
T ss_pred             CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-
Confidence            233   578899999998899999999999999987532      1233322      234689999998776555555 


Q ss_pred             CCCcEEEEeCCCCCCCC--------CCcce-eecccC--ceeEEEE-ccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380          388 TDGTACIWDLRSMATDK--------PEPMK-VLSHKR--AVHSAYF-SPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN  455 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~--------~~~~~-~~~~~~--~v~~l~~-sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  455 (536)
                      .|-.|+++.-..+....        ..... ..+|..  .|..+-| -|...|+++|+.-|.|.||+-.+++.+..+...
T Consensus       356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD  435 (559)
T KOG1334|consen  356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD  435 (559)
T ss_pred             cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence            47789999543332211        11112 346654  4666665 467889999999999999999888877666433


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ..   .+.+  +.-+|--..||+.+-|..|+||...+.
T Consensus       436 r~---VVNC--LEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  436 RH---VVNC--LEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             cc---eEec--cCCCCCCchhhccCCccceeeecCCcc
Confidence            32   2333  334677778999999999999987544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=3.3e-15  Score=152.63  Aligned_cols=221  Identities=15%  Similarity=0.085  Sum_probs=151.4

Q ss_pred             cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380          214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT  290 (536)
Q Consensus       214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  290 (536)
                      +..|.+||.+......+..|...+.+.+|+|  ||+.|+..+.+   ..|++||+.++.  ...+..+.+|   ...++|
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSP--DG~~la~~s~~~~~~~i~i~dl~tg~--~~~l~~~~g~---~~~~~w  255 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSP--DGSKLAYVSFENKKSQLVVHDLRSGA--RKVVASFRGH---NGAPAF  255 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcC--CCCEEEEEEecCCCcEEEEEeCCCCc--eEEEecCCCc---cCceeE
Confidence            4689999976554444566778899999999  99999887654   369999998632  1233344444   346899


Q ss_pred             ecCCCCEEEEE-ECCCeEEE--EECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEecc
Q 009380          291 QQYCLSKIFTS-CYDGLIRL--MDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLH  366 (536)
Q Consensus       291 ~~~~~~~l~s~-s~dg~I~v--wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h  366 (536)
                      +|++ +.|+.+ +.+|.+.|  ||+.++....+..+...+.+..|+|++..+++++..+|...||++.... ....+ .+
T Consensus       256 SPDG-~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~  333 (429)
T PRK01742        256 SPDG-SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG  333 (429)
T ss_pred             CCCC-CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence            9999 776665 46886555  4777777777767777788999999984444455567888888775432 22222 34


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC--
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV--  444 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~--  444 (536)
                      ..  .+..|+|++ ..|+.++.++ +.+||+.++..     ..+..+ ....++.|+|+|++|+.++.++.+.+|++.  
T Consensus       334 ~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~-----~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~  403 (429)
T PRK01742        334 RG--YSAQISADG-KTLVMINGDN-VVKQDLTSGST-----EVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSA  403 (429)
T ss_pred             CC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe-----EEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence            33  457899988 5666666554 66699987531     111111 133568899999999999999988888753  


Q ss_pred             CCCcceEEe
Q 009380          445 NFENTSMIH  453 (536)
Q Consensus       445 ~~~~~~~~~  453 (536)
                      ++.....+.
T Consensus       404 ~G~~~~~l~  412 (429)
T PRK01742        404 DGRFKARLP  412 (429)
T ss_pred             CCCceEEcc
Confidence            455555553

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.68  E-value=1.7e-16  Score=150.13  Aligned_cols=268  Identities=16%  Similarity=0.206  Sum_probs=199.6

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .-+.+.|+.  +|..|+.|+.-|.|..+|..+    ......+. -...|.++.|..+. ++|++ .....+.|||-..-
T Consensus       131 GPY~~~ytr--nGrhlllgGrKGHlAa~Dw~t----~~L~~Ei~-v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~Gt  201 (545)
T KOG1272|consen  131 GPYHLDYTR--NGRHLLLGGRKGHLAAFDWVT----KKLHFEIN-VMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNGT  201 (545)
T ss_pred             CCeeeeecC--CccEEEecCCccceeeeeccc----ceeeeeee-hhhhhhhhhhhcch-HHHHh-hhhceEEEecCCCc
Confidence            457788988  999999999999999999997    44444443 45678999998775 55554 45778999998766


Q ss_pred             eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                      ++..+.. ...|..+.|.|.. .+|++++..|.+.--|+.+|+.+..+..-.+.+..++-+|-+ -++-+|...|+|.+|
T Consensus       202 ElHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlW  278 (545)
T KOG1272|consen  202 ELHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLW  278 (545)
T ss_pred             EEeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEec
Confidence            6555443 4678999999987 788888999999999999999999998888999999999977 589999999999999


Q ss_pred             eCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380          396 DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC  475 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  475 (536)
                      .....    ..+..+..|.++|.+|++.++|.|++|++.|..++|||+++...+.++....+.    ..  +++|..| +
T Consensus       279 SP~sk----ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a----~~--ls~Sqkg-l  347 (545)
T KOG1272|consen  279 SPNSK----EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA----SN--LSLSQKG-L  347 (545)
T ss_pred             CCCCc----chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc----cc--ccccccc-c
Confidence            98873    467788899999999999999999999999999999999998877766542211    11  3355443 4


Q ss_pred             EEEEcCCCcEEEEcCCcc---ccceeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380          476 VFIGNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGG  528 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~~~---~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg  528 (536)
                      |+++ ....|.||.-...   ..-..+..|........+.|.|.. +.|-.|-.-|
T Consensus       348 LA~~-~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E-DvLGIGH~~G  401 (545)
T KOG1272|consen  348 LALS-YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE-DVLGIGHAGG  401 (545)
T ss_pred             eeee-cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH-HeeeccccCC
Confidence            4444 4457999953211   111122223222233466777754 5555554433

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=5.3e-15  Score=139.05  Aligned_cols=199  Identities=16%  Similarity=0.227  Sum_probs=148.1

Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      .+++|+.++ ..+++|+.||++++|+..+...+.....|...|.++.|+||+ .+|++-+.| ..+||+++++...  ..
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~--a~  222 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAAL--AR  222 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchh--hh
Confidence            789999998 799999999999999988888777888899999999999988 799999989 8999999997311  11


Q ss_pred             ceeecccCceeEEEEccCC---CeEEE--EeCCCcEEEEeCCCCCcceEEeccCCC--CceeeeeEEEEcCCCCEEEEEc
Q 009380          408 MKVLSHKRAVHSAYFSPSG---SSLAT--TSFDDTIGIWSGVNFENTSMIHHNNQT--GRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       408 ~~~~~~~~~v~~l~~sp~g---~~l~t--~s~dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                      ..-.........+.|+.++   .+++.  ...-+.|+.||+..+..-..+......  ...+++  +..+.+|++++.|+
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSs--l~VS~dGkf~AlGT  300 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISS--LAVSDDGKFLALGT  300 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCccee--EEEcCCCcEEEEec
Confidence            1112344566778888766   33322  234456777776544332111111111  112444  55699999999999


Q ss_pred             CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          481 MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       481 ~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +||.|-|++..+.+.++.++..|...+ +.+.|+| +.+++++.+.|....|..+
T Consensus       301 ~dGsVai~~~~~lq~~~~vk~aH~~~V-T~ltF~P-dsr~~~svSs~~~~~v~~l  353 (398)
T KOG0771|consen  301 MDGSVAIYDAKSLQRLQYVKEAHLGFV-TGLTFSP-DSRYLASVSSDNEAAVTKL  353 (398)
T ss_pred             cCCcEEEEEeceeeeeEeehhhheeee-eeEEEcC-CcCcccccccCCceeEEEE
Confidence            999999999999988888887777755 7899999 5689999998888887654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=9.1e-15  Score=127.61  Aligned_cols=231  Identities=16%  Similarity=0.185  Sum_probs=165.5

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCC---------C--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEK---------E--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW  352 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~---------~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~  352 (536)
                      .|.+-+|+|.+ ++|++|..+|.|.++.+..         +  .......|+++|..++|+.   .+|++|+. |.|+-|
T Consensus        12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw   86 (325)
T KOG0649|consen   12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGW   86 (325)
T ss_pred             HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEe
Confidence            35566789998 9999999999999999864         1  2233457999999999983   35666654 999999


Q ss_pred             ECCCCcc------ceeEe--cc-----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeE
Q 009380          353 DVRSRKS------ATEWL--LH-----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS  419 (536)
Q Consensus       353 d~~~~~~------~~~~~--~h-----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~  419 (536)
                      ..+....      +....  .|     --.|+++...|....+ ++++.|+.++.||+.+++    ....+.+|...|.+
T Consensus        87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~----i~r~~rGHtDYvH~  161 (325)
T KOG0649|consen   87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGR----IQREYRGHTDYVHS  161 (325)
T ss_pred             eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCE----EEEEEcCCcceeee
Confidence            8764321      11111  12     2358999999976444 445579999999999974    55566799999999


Q ss_pred             EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-------CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          420 AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-------NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       420 l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      +.--.....+++|+.||+++|||.++.+.+.++...       ...+.|+..+    .-+..++++|+. ..+.+|++..
T Consensus       162 vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal----a~~edWlvCGgG-p~lslwhLrs  236 (325)
T KOG0649|consen  162 VVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL----AVNEDWLVCGGG-PKLSLWHLRS  236 (325)
T ss_pred             eeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE----eccCceEEecCC-CceeEEeccC
Confidence            998555556999999999999999999988887422       1234555543    346678888864 4699999999


Q ss_pred             cccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          493 RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       493 ~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .++...+.-.....   .+.|.   .+.+++++....|.-|.+
T Consensus       237 se~t~vfpipa~v~---~v~F~---~d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  237 SESTCVFPIPARVH---LVDFV---DDCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             CCceEEEeccccee---Eeeee---cceEEEeccccceeeeee
Confidence            88877765322111   23342   367778887777777764

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=4.6e-14  Score=129.99  Aligned_cols=285  Identities=12%  Similarity=0.128  Sum_probs=184.1

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      +-.+..++||+  .-.-+|++..|-.|++|+-..     .+...++ .....|+|++|-|.+..-|+.|+..| |++|..
T Consensus        98 ~~dlr~~aWhq--H~~~fava~nddvVriy~kss-----t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~  169 (445)
T KOG2139|consen   98 EIDLRGVAWHQ--HIIAFAVATNDDVVRIYDKSS-----TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSD  169 (445)
T ss_pred             hcceeeEeech--hhhhhhhhccCcEEEEeccCC-----CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEc
Confidence            44577899999  666788899999999999875     2222232 34567999999999878888888666 899987


Q ss_pred             CCC----eE--------EEe--ecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCccceeEeccCCCeEEEEEec
Q 009380          313 EKE----VF--------DLV--YSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATEWLLHEARINTIDFNP  377 (536)
Q Consensus       313 ~~~----~~--------~~~--~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p  377 (536)
                      ...    ..        ..+  .....+|++|.|.+++ ..+++++ .|..|.|||..++..+.-.....+.+.-+.|+|
T Consensus       170 s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg-t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP  248 (445)
T KOG2139|consen  170 SRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG-TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP  248 (445)
T ss_pred             CcccccccccccccccchhheeCCCCceeeEEEEcCCC-CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC
Confidence            531    11        111  1234789999999998 6666665 567899999999877655444567788999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce-------
Q 009380          378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS-------  450 (536)
Q Consensus       378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~-------  450 (536)
                      |+ .+|.++.-|+..++|......    ......-..+.|...+|+|+|..|+..+. |.-++|.+.-.....       
T Consensus       249 dg-d~lfaAt~davfrlw~e~q~w----t~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~  322 (445)
T KOG2139|consen  249 DG-DVLFAATCDAVFRLWQENQSW----TKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQS  322 (445)
T ss_pred             CC-CEEEEecccceeeeehhcccc----eecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCccc
Confidence            98 678888889999999655421    12222234459999999999987766553 334555543111000       


Q ss_pred             ----EEec-----cCCCCc---eeeeeEEEEcCCCCEEEEEcCC--------CcEEEEcCCccccceec-----cCCcee
Q 009380          451 ----MIHH-----NNQTGR---WISSFRAIWGWDDSCVFIGNMT--------RTVEVISPAQRRSVATL-----QSPYIS  505 (536)
Q Consensus       451 ----~~~~-----~~~~~~---~~~~~~~~~s~~g~~l~~gs~d--------g~I~v~d~~~~~~~~~l-----~~~~~~  505 (536)
                          .+..     ....+.   .--.-+++|+|.|.+|++.-..        ..|.+||....-.+.-.     .+.+-.
T Consensus       323 ~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~  402 (445)
T KOG2139|consen  323 IKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPA  402 (445)
T ss_pred             ceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCc
Confidence                0000     001110   0011247899999999986443        23667776654332221     222311


Q ss_pred             eeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          506 AIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       506 ~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .  +.|.++-+++.+|..+=+.|.+.-|.+
T Consensus       403 ~--IsF~pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  403 Y--ISFGPLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             e--EEeeecccCCcEEEEEeccCceEeeee
Confidence            1  234444456778888888888887764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.3e-15  Score=146.92  Aligned_cols=224  Identities=16%  Similarity=0.192  Sum_probs=164.7

Q ss_pred             eEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCceeEEEecCCC-CCEEEEEECCCeEEE
Q 009380          275 IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNI  351 (536)
Q Consensus       275 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i  351 (536)
                      ...+.+|++.|+|+.|+.+| .+|++||.|-.+.|||.-..+....  .+|...|.++.|-|.. ..++++|..|..|++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            34678999999999999999 9999999999999999876655443  4788999999998853 357888999999999


Q ss_pred             EECCC----------CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC------CcceeecccC
Q 009380          352 WDVRS----------RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP------EPMKVLSHKR  415 (536)
Q Consensus       352 ~d~~~----------~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~------~~~~~~~~~~  415 (536)
                      ||+..          ......+..|...|..|+-.|.+++.|.++++||+|+-+|+|....-.+      .+......--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            99984          2335667789999999999999999999999999999999998432111      0111112234


Q ss_pred             ceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCC--------C----------cceEEe--cc-CCCC---cee-eeeEEEE
Q 009380          416 AVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF--------E----------NTSMIH--HN-NQTG---RWI-SSFRAIW  469 (536)
Q Consensus       416 ~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~--------~----------~~~~~~--~~-~~~~---~~~-~~~~~~~  469 (536)
                      ...++..+| +..+|++|+.|-..++||.+..        .          ++..+.  |. +..+   ..+ .+.-+.|
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf  281 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF  281 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence            567899999 5578999999999999994311        1          111111  11 1111   111 1233679


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCCccccceec
Q 009380          470 GWDDSCVFIGNMTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l  499 (536)
                      +|+|.-|++.-..-.|++||+..++....+
T Consensus       282 npNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  282 NPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             CCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            999987777655668999999887665443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.67  E-value=1.1e-14  Score=152.75  Aligned_cols=263  Identities=13%  Similarity=0.088  Sum_probs=179.6

Q ss_pred             EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-------eEEEeec-CCCceeEEEecC
Q 009380          263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-------VFDLVYS-SEYAVFSLSQQP  334 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-------~~~~~~~-~~~~i~~l~~~~  334 (536)
                      |+..     +..+..+..|...|..++.++....+|+|||.||+|++|+..+-       .....+. ....+.++.+.+
T Consensus      1034 W~p~-----G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1034 WNPR-----GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCcc-----ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence            5555     78888999999999999998876689999999999999998641       2233333 567889999988


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCcc-------ceeEeccC-CCe-EEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCC
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKS-------ATEWLLHE-ARI-NTIDFNPRNP-NIMATSSTDGTACIWDLRSMATDK  404 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~-------~~~~~~h~-~~i-~~i~~~p~~~-~~l~s~s~dg~i~iwdl~~~~~~~  404 (536)
                      .+ +.+++++.||.|.+.++.....       ......+. +.+ ..-+|..... ..++.+..-+.|..||+++..  .
T Consensus      1109 ~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~--~ 1185 (1431)
T KOG1240|consen 1109 NG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH--D 1185 (1431)
T ss_pred             CC-CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh--h
Confidence            88 8999999999999999876211       11112222 223 3334433222 377888888999999999853  1


Q ss_pred             CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE-cCCCCEEEE-Ec-C
Q 009380          405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW-GWDDSCVFI-GN-M  481 (536)
Q Consensus       405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~-gs-~  481 (536)
                      ....+.....+.|++++.+|.++++++|+..|.+.+||++=..++....+...  .++..+.+++ .+.....++ |+ .
T Consensus      1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~--~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR--APIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred             HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc--CCcceEEeeccCCCCceEEEecccC
Confidence            12233334567899999999999999999999999999987766666655433  2333333332 333445444 44 5


Q ss_pred             CCcEEEEcCCccccceeccCCce----------------eeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          482 TRTVEVISPAQRRSVATLQSPYI----------------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       482 dg~I~v~d~~~~~~~~~l~~~~~----------------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .+.|.+|++.+|.....+.....                ......++.-+..+..+.+|+.|..|+.||.
T Consensus      1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred             CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence            68899999998865554433200                0011111222223578999999999999995

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.66  E-value=2.7e-16  Score=148.89  Aligned_cols=273  Identities=15%  Similarity=0.216  Sum_probs=203.2

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEE
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWN  264 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd  264 (536)
                      +-..+.++.+|+.+.          -++..|.|-.+|+..............|.++.|..  +..++|++-+ ..++|||
T Consensus       131 GPY~~~ytrnGrhll----------lgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LH--neq~~AVAQK-~y~yvYD  197 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLL----------LGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLH--NEQFFAVAQK-KYVYVYD  197 (545)
T ss_pred             CCeeeeecCCccEEE----------ecCCccceeeeecccceeeeeeehhhhhhhhhhhc--chHHHHhhhh-ceEEEec
Confidence            334556667777666          45777888888875554444344478899999998  7788888775 5899999


Q ss_pred             CCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEE
Q 009380          265 LDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFG  343 (536)
Q Consensus       265 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g  343 (536)
                      -.     +..++.++.|. .|..+.|.|.. -+|++++..|.+..-|+.+|++...+ ...+.+..++-+|-+ ..+-+|
T Consensus       198 ~~-----GtElHClk~~~-~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~G  269 (545)
T KOG1272|consen  198 NN-----GTELHCLKRHI-RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLG  269 (545)
T ss_pred             CC-----CcEEeehhhcC-chhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEc
Confidence            77     67888888774 58999999998 88899999999999999999876544 456788899999987 789999


Q ss_pred             ECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380          344 EGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS  423 (536)
Q Consensus       344 ~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s  423 (536)
                      ..+|+|.+|.....+++..+..|.++|.+|++.+.| ++++|.+.|..|+|||+|+..    .+..... ..+...++||
T Consensus       270 hsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~----ql~t~~t-p~~a~~ls~S  343 (545)
T KOG1272|consen  270 HSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGG-RYMATTGLDRKVKIWDLRNFY----QLHTYRT-PHPASNLSLS  343 (545)
T ss_pred             CCCceEEecCCCCcchHHHHHhcCCCcceEEECCCC-cEEeecccccceeEeeecccc----ccceeec-CCCccccccc
Confidence            999999999999999988888999999999999977 899999999999999999853    3333333 5677888898


Q ss_pred             cCCCeEEEEeCCCcEEEEeCC-CCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          424 PSGSSLATTSFDDTIGIWSGV-NFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       424 p~g~~l~t~s~dg~I~iwd~~-~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      ..|  +++.+....|.||.-. .+. ......-....+..+..  +.|.|-...|-+|-..|.-.+.
T Consensus       344 qkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~--l~FcP~EDvLGIGH~~G~tsil  406 (545)
T KOG1272|consen  344 QKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVED--LRFCPYEDVLGIGHAGGITSIL  406 (545)
T ss_pred             ccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCccccc--ceeccHHHeeeccccCCceeEe
Confidence            766  5555666789999532 211 11111111222223444  5577766667666655544444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.1e-13  Score=128.07  Aligned_cols=237  Identities=10%  Similarity=0.107  Sum_probs=172.5

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eEEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCcc
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKS  359 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~  359 (536)
                      ..+..+.|+.+. ..|..|+.|| .++|..+.- ++.........|.-+-|+.   .+++..+.+  ..+++++++.+..
T Consensus         6 ~ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~   80 (391)
T KOG2110|consen    6 PTINFIGFNQDS-TLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT   80 (391)
T ss_pred             cceeeeeeccce-eEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence            456777799887 8888888888 567776542 2212222234455566654   356555544  3599999998888


Q ss_pred             ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCc
Q 009380          360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDT  437 (536)
Q Consensus       360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~  437 (536)
                      +..+. ....|.+|.++.   +.|+++=. ..|+|||+++++... .+.....+...+.++++++.+.|++--+  ..|.
T Consensus        81 ICe~~-fpt~IL~VrmNr---~RLvV~Le-e~IyIydI~~MklLh-TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~Gd  154 (391)
T KOG2110|consen   81 ICEIF-FPTSILAVRMNR---KRLVVCLE-ESIYIYDIKDMKLLH-TIETTPPNPKGLCALSPNNANCYLAYPGSTTSGD  154 (391)
T ss_pred             EEEEe-cCCceEEEEEcc---ceEEEEEc-ccEEEEecccceeeh-hhhccCCCccceEeeccCCCCceEEecCCCCCce
Confidence            87776 678899999986   34555543 459999999975211 1111224666677777777777887644  4688


Q ss_pred             EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc-EEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380          438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT-VEVISPAQRRSVATLQSPYISAIPCRFHAHPH  516 (536)
Q Consensus       438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~-I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~  516 (536)
                      |.|||+.+.++...+..+..   .+.+  ++|+++|.+||+++..|+ |+||.+.+|+.+++|.-+...+...+++|+| 
T Consensus       155 V~l~d~~nl~~v~~I~aH~~---~lAa--lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-  228 (391)
T KOG2110|consen  155 VVLFDTINLQPVNTINAHKG---PLAA--LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-  228 (391)
T ss_pred             EEEEEcccceeeeEEEecCC---ceeE--EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-
Confidence            99999999988888863222   2333  779999999999999987 6999999999999998666555557899999 


Q ss_pred             CCCEEEEEccCCeEEEEecC
Q 009380          517 QVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       517 ~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++.+|++.++.++|+||.++
T Consensus       229 ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  229 DSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CCCeEEEecCCCeEEEEEec
Confidence            56999999999999999875

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=3.2e-13  Score=122.67  Aligned_cols=237  Identities=13%  Similarity=0.109  Sum_probs=169.3

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC--CEEEEEEecCCCCEEE-EEECC------CeE
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG--PISGIVTQQYCLSKIF-TSCYD------GLI  307 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~~~~l~-s~s~d------g~I  307 (536)
                      ..+++|+.  |..-+++|..+| .+||+.+.    .+....-+.+.+  .+..+-|-.   ++|+ .|+.+      ..|
T Consensus         8 ~lsvs~NQ--D~ScFava~~~G-friyn~~P----~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkv   77 (346)
T KOG2111|consen    8 TLSVSFNQ--DHSCFAVATDTG-FRIYNCDP----FKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKV   77 (346)
T ss_pred             eeEEEEcc--CCceEEEEecCc-eEEEecCc----hhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceE
Confidence            44589988  888888888765 89999885    222222222222  233333332   4444 33333      469


Q ss_pred             EEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC-CCccceeEecc--CCCeEEEEEecCCCCEEE
Q 009380          308 RLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR-SRKSATEWLLH--EARINTIDFNPRNPNIMA  384 (536)
Q Consensus       308 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h--~~~i~~i~~~p~~~~~l~  384 (536)
                      .|||=....+...+....+|.++.+.++   .|++... +.|.+|... +.+.++.+...  ...+.+++-+. +..+||
T Consensus        78 iIWDD~k~~~i~el~f~~~I~~V~l~r~---riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-~k~~La  152 (346)
T KOG2111|consen   78 IIWDDLKERCIIELSFNSEIKAVKLRRD---RIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-NKSLLA  152 (346)
T ss_pred             EEEecccCcEEEEEEeccceeeEEEcCC---eEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCC-CceEEE
Confidence            9999777777777888899999999876   4555554 499999988 45666666532  23344444333 224555


Q ss_pred             EEe-CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc-EEEEeCCCCCcceEEeccCCCCcee
Q 009380          385 TSS-TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTSMIHHNNQTGRWI  462 (536)
Q Consensus       385 s~s-~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~  462 (536)
                      .-+ .-|.|.|-|+.....  ..+..+..|...|.+++.+-+|..+||+|..|+ |+|||..+++.+..++.....   .
T Consensus       153 fPg~k~GqvQi~dL~~~~~--~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A  227 (346)
T KOG2111|consen  153 FPGFKTGQVQIVDLASTKP--NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR---A  227 (346)
T ss_pred             cCCCccceEEEEEhhhcCc--CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---h
Confidence            444 459999999988542  145667799999999999999999999999998 999999999999998754433   3


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ..++++|||+..+|+++|..|+|+||.+...
T Consensus       228 ~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  228 DIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             eEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            4556889999999999999999999988653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=7.1e-14  Score=142.50  Aligned_cols=236  Identities=12%  Similarity=0.064  Sum_probs=154.8

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      ..|.+||.+.     .....+..+...+.+..|+|+| +.|+..+.   +..|.+|++.++....+......+....|+|
T Consensus       179 ~~l~~~d~dg-----~~~~~lt~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP  252 (429)
T PRK03629        179 YELRVSDYDG-----YNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP  252 (429)
T ss_pred             eeEEEEcCCC-----CCCEEeecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence            3688888874     3334444567789999999999 77776543   4579999999887766655555667899999


Q ss_pred             CCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE--eCCCCCCCCCCccee
Q 009380          335 NNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW--DLRSMATDKPEPMKV  410 (536)
Q Consensus       335 ~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw--dl~~~~~~~~~~~~~  410 (536)
                      ++..++++...+|  .|++||+.+++.. .+..+...+....|+|++..++++...++...||  |+.++.     ...+
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-----~~~l  326 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-----PQRI  326 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-----eEEe
Confidence            9944444445555  5999999887653 3443455678899999985444444444554555  655432     2233


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc---
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT---  484 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~---  484 (536)
                      ..+........|+|+|++|+..+.+   ..|.+||+.++... .+....      ....+.|+|||++|+.++.++.   
T Consensus       327 t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~------~~~~p~~SpDG~~i~~~s~~~~~~~  399 (429)
T PRK03629        327 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF------LDETPSIAPNGTMVIYSSSQGMGSV  399 (429)
T ss_pred             ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC------CCCCceECCCCCEEEEEEcCCCceE
Confidence            3344456678999999998877644   35888998876533 222111      1123679999999998887754   


Q ss_pred             EEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380          485 VEVISPAQRRSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       485 I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      +.++++.+ .....+.++....  ...+|+|
T Consensus       400 l~~~~~~G-~~~~~l~~~~~~~--~~p~Wsp  427 (429)
T PRK03629        400 LNLVSTDG-RFKARLPATDGQV--KFPAWSP  427 (429)
T ss_pred             EEEEECCC-CCeEECccCCCCc--CCcccCC
Confidence            67777754 3556665533322  3466766

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.5e-14  Score=137.96  Aligned_cols=280  Identities=15%  Similarity=0.183  Sum_probs=194.5

Q ss_pred             ccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCC--CCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          232 IMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHL--GPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      .|+..-+.|..+|  ||.|+ |+|..--.|++||+..      ....|..|.  ..|.-.-.+.|- ..++.-..|.+|-
T Consensus        49 e~p~ast~ik~s~--DGqY~lAtG~YKP~ikvydlan------LSLKFERhlDae~V~feiLsDD~-SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   49 EMPTASTRIKVSP--DGQYLLATGTYKPQIKVYDLAN------LSLKFERHLDAEVVDFEILSDDY-SKSVFLQNDRTIE  119 (703)
T ss_pred             CCccccceeEecC--CCcEEEEecccCCceEEEEccc------ceeeeeecccccceeEEEeccch-hhheEeecCceee
Confidence            3577889999999  99875 5677788999999985      223344443  334444444443 5666667788776


Q ss_pred             EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      +..--..-..  ......-.+++++.-... |++++....|+-+++..|..+..+....+.+++|..++.+ .+|++|+.
T Consensus       120 fHak~G~hy~--~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~Gt~  195 (703)
T KOG2321|consen  120 FHAKYGRHYR--TRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLACGTE  195 (703)
T ss_pred             ehhhcCeeee--eecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEeccc
Confidence            6543322111  112234456666655533 4445555589999999999999998888999999999977 69999999


Q ss_pred             CCcEEEEeCCCCCCCCC--CcceeecccC-----ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          389 DGTACIWDLRSMATDKP--EPMKVLSHKR-----AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~--~~~~~~~~~~-----~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      +|.|-.||.|.-.....  ....+..|.+     .|+++.|+.+|-.+++|+.+|.|.|||++..+++..-.|....   
T Consensus       196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~---  272 (703)
T KOG2321|consen  196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYEL---  272 (703)
T ss_pred             CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCcc---
Confidence            99999999997432110  0111112333     4999999999999999999999999999999888877665432   


Q ss_pred             eeeeEEEEcCC--CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          462 ISSFRAIWGWD--DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       462 ~~~~~~~~s~~--g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                       .+..+.|.+.  +..|++. ....++|||-.+|+....+.....  + ..+++-| ++.++.+|..++.+..|
T Consensus       273 -pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~--l-ND~C~~p-~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  273 -PIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD--L-NDFCFVP-GSGMFFTANESSKMHTY  340 (703)
T ss_pred             -ceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCC--c-Cceeeec-CCceEEEecCCCcceeE
Confidence             3334667554  3334433 346799999999999888775332  2 3566667 56899999998887665

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.64  E-value=4.5e-14  Score=128.16  Aligned_cols=213  Identities=14%  Similarity=0.139  Sum_probs=163.4

Q ss_pred             EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380          277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW  352 (536)
Q Consensus       277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~  352 (536)
                      .+.....+|+|.+|+++. ..++.+.....|.||...+..    ...+..|+..|+.++|.|.. +.|++++.|..-++|
T Consensus         5 ~~~~~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw   82 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW   82 (361)
T ss_pred             EeeeccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence            344446789999999998 999999999999999988765    23445789999999999998 899999999999999


Q ss_pred             ECCCC---ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380          353 DVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       353 d~~~~---~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l  429 (536)
                      ....+   ++...+..+....++|.|+|.+ +.||+|+.-..|.||-+...+.--.....-..+...|+++.|+|++-++
T Consensus        83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence            98543   3445555789999999999965 8999999999999998876431111111223577899999999999999


Q ss_pred             EEEeCCCcEEEEeCC-----CCC---------cceEE-eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          430 ATTSFDDTIGIWSGV-----NFE---------NTSMI-HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~-----~~~---------~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      ++|+.|+..+||..-     ...         +...+ ......+.|+.  .+.|+|+|..|+-.+.|..+.+-|.....
T Consensus       162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh--~v~fs~sG~~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH--GVLFSPSGNRLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee--eeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence            999999999999742     100         00000 01113344444  47899999999999999999999987764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.63  E-value=2.7e-14  Score=137.77  Aligned_cols=236  Identities=14%  Similarity=0.117  Sum_probs=151.5

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCce--EEeccCCCCEEEEEEe-----cCCCCEEEEEECCCeEEEEECCCCeEEE
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGI--YLFRTHLGPISGIVTQ-----QYCLSKIFTSCYDGLIRLMDAEKEVFDL  319 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~~-----~~~~~~l~s~s~dg~I~vwd~~~~~~~~  319 (536)
                      .|++|+..- ...+++|+..........+  ..+.+  ..-+|-+|+     +.+ --|+.+-.-|.|++.|........
T Consensus       134 ~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp~~~~~sk  209 (636)
T KOG2394|consen  134 KGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDPINFEVSK  209 (636)
T ss_pred             CCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCC-cceEEeeccCceEEecchhhHHHH
Confidence            555554432 2367888877422111111  12222  122344442     334 567778778889998877654433


Q ss_pred             eec-----CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE--EEecCCCCEEEEEeCCCcE
Q 009380          320 VYS-----SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI--DFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       320 ~~~-----~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i--~~~p~~~~~l~s~s~dg~i  392 (536)
                      ++.     ....++|+.|-|.+...++++-.+|.+++||..-          ....+.-  ...+++ ..|+..      
T Consensus       210 lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~----------~~~~t~p~~~~~k~~-~~f~i~------  272 (636)
T KOG2394|consen  210 LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI----------VCGATAPSYQALKDG-DQFAIL------  272 (636)
T ss_pred             hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc----------cccCCCCcccccCCC-CeeEEe------
Confidence            332     3478999999999989999999999999999721          1111111  122223 223222      


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                       .|--...   ...+....-..+.|+.++|+|||++||+.+.||.++|||..+.+.+..++.-  .+   ..++++||||
T Consensus       273 -t~ksk~~---rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FG---GLLCvcWSPD  343 (636)
T KOG2394|consen  273 -TSKSKKT---RNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FG---GLLCVCWSPD  343 (636)
T ss_pred             -eeecccc---CCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--cc---ceEEEEEcCC
Confidence             1111110   1123333344569999999999999999999999999999887766554321  11   2456899999


Q ss_pred             CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeec
Q 009380          473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH  514 (536)
Q Consensus       473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~  514 (536)
                      |+||++|+.|--|.||.+...+.++.-++|...+.  .++|.
T Consensus       344 GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs--~VaFD  383 (636)
T KOG2394|consen  344 GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS--VVAFD  383 (636)
T ss_pred             ccEEEecCCcceEEEEEeccceEEEecccccccee--eEeec
Confidence            99999999999999999999999998887765544  44444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=7.2e-14  Score=143.09  Aligned_cols=223  Identities=15%  Similarity=0.057  Sum_probs=150.3

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      ..|.+||.+.     .....+..|...+.+..|+|++ +.|+.++.+   ..|.+||+.++....+....+...+..|+|
T Consensus       184 ~~l~i~D~~g-----~~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDG-----YNPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCC-----CCceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence            3688899863     3445566677889999999999 888877643   469999999887766655556666889999


Q ss_pred             CCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCccee
Q 009380          335 NNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       335 ~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~  410 (536)
                      ++..++++.+.+|  .|++||+.+++. ..+..+.......+|+|++..++++...+|.  |+++|+.+++     ...+
T Consensus       258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-----~~~l  331 (433)
T PRK04922        258 DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-----AERL  331 (433)
T ss_pred             CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----eEEe
Confidence            9954555556655  599999988764 4444555556788999998544444444555  6666766542     2222


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---Cc
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RT  484 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~  484 (536)
                      ..+......++|+|+|++|+..+.++   .|.+||+.+++.. .+.+..    .  ...+.|+|||++|+..+.+   +.
T Consensus       332 t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~----~--~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        332 TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS----L--DESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC----C--CCCceECCCCCEEEEEEecCCceE
Confidence            22333455789999999998776443   5999999776543 332211    1  1125799999987776653   45


Q ss_pred             EEEEcCCccccceecc
Q 009380          485 VEVISPAQRRSVATLQ  500 (536)
Q Consensus       485 I~v~d~~~~~~~~~l~  500 (536)
                      |.+++..++ ....+.
T Consensus       405 L~~~~~~g~-~~~~l~  419 (433)
T PRK04922        405 LAAVSTDGR-VRQRLV  419 (433)
T ss_pred             EEEEECCCC-ceEEcc
Confidence            788888654 444454

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.63  E-value=3.4e-14  Score=130.08  Aligned_cols=255  Identities=15%  Similarity=0.187  Sum_probs=193.4

Q ss_pred             ccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCC
Q 009380          171 KDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSD  247 (536)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~  247 (536)
                      ..+.+..+++||.+.|......|....+.+          .+.|..+++|--...   -..+....+.+++++.+++  +
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~----------~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e   79 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVIS----------VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--E   79 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEE----------ccccceeeeEEeccccccCchhhhhCCCCceEeeeec--c
Confidence            455677788999999888887777766653          467778888853111   1234455689999999999  8


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAV  327 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i  327 (536)
                      ...|++|-.+|++.-+.+...-......+.+..|...|..+-|+... .++++.+.|..+.-.-.+.+...--+......
T Consensus        80 ~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~  158 (404)
T KOG1409|consen   80 SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPA  158 (404)
T ss_pred             ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccC
Confidence            99999999999999998876444456677888999999999999876 99999999998866555555433222222222


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECC--CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVR--SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~--~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                      +++.+.-   .+.++|...|.|.+..+.  .-..+.++.+|.+.+.+++|.|.+ .++.+|..|..+.+||+...+   .
T Consensus       159 t~~~~d~---~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg~~---g  231 (404)
T KOG1409|consen  159 SALQFDA---LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGGRK---G  231 (404)
T ss_pred             CCCceee---EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccCCc---c
Confidence            2333321   156667777777666554  345688899999999999999955 799999999999999997643   3


Q ss_pred             CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      ......+|...|..+..-+.-..+++++.||.|.+|+++.
T Consensus       232 ~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  232 TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            5566778999999999988888999999999999999864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=2.1e-13  Score=132.65  Aligned_cols=310  Identities=13%  Similarity=0.093  Sum_probs=203.8

Q ss_pred             eeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE-----eC----
Q 009380          186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG-----SK----  256 (536)
Q Consensus       186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg-----~~----  256 (536)
                      ...+.+++.|++++.+.+..++++           +..... .++......++++.|+|  -+.+|.+=     ..    
T Consensus        37 ~~v~~~S~~G~lfA~~~~~~v~i~-----------~~~~~~-~~lt~~~~~~~~L~fSP--~g~yL~T~e~~~i~~~~~~  102 (566)
T KOG2315|consen   37 CNVFAYSNNGRLFAYSDNQVVKVF-----------EIATLK-VVLCVELKKTYDLLFSP--KGNYLLTWEPWAIYGPKNA  102 (566)
T ss_pred             ceeEEEcCCCcEEEEEcCCeEEEE-----------EccCCc-EEEEeccceeeeeeecc--cccccccccccccccCCCC
Confidence            567789999999998855555444           432221 22222233799999999  88888762     11    


Q ss_pred             -CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380          257 -LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       257 -dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~  335 (536)
                       .-.+.+|++.+    ......++.-...-++..|+.|.  .|+.--..+.+.+|++..-......-|...|..+.++|.
T Consensus       103 ~~pn~~v~~vet----~~~~s~~q~k~Q~~W~~qfs~dE--sl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpg  176 (566)
T KOG2315|consen  103 SNPNVLVYNVET----GVQRSQIQKKMQNGWVPQFSIDE--SLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPG  176 (566)
T ss_pred             CCCceeeeeecc----ceehhheehhhhcCcccccccch--hhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCC
Confidence             23577999987    33344444333333688999885  444444567899999987544444446788999999998


Q ss_pred             -CCCEEEE-----EECCCeEEEEECCCCcc-----ceeEeccCCCeEEEEEecCCCCEEEEEeCC-----------CcEE
Q 009380          336 -NVNTLYF-----GEGQGGLNIWDVRSRKS-----ATEWLLHEARINTIDFNPRNPNIMATSSTD-----------GTAC  393 (536)
Q Consensus       336 -~~~~l~~-----g~~dg~i~i~d~~~~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----------g~i~  393 (536)
                       .+..+++     ++.-+.|+||-......     .++|.  ...=..+.|++-+.-+|+.++.|           .+++
T Consensus       177 p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly  254 (566)
T KOG2315|consen  177 PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY  254 (566)
T ss_pred             CCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence             3344544     34456899998763222     12221  22334588988775565555432           3577


Q ss_pred             EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC
Q 009380          394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW  471 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  471 (536)
                      +.++...     ....-..-.++|+++.|+|+|+-|+++.  +-..+.|||++ +.++..+.    .+..-+   +-|+|
T Consensus       255 ll~t~g~-----s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~---~~fnp  321 (566)
T KOG2315|consen  255 LLATQGE-----SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNT---AFFNP  321 (566)
T ss_pred             EEEecCc-----eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccc---eEECC
Confidence            7777731     2333334578999999999998776643  56789999985 33444442    221111   66999


Q ss_pred             CCCEEEEEcCC---CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc------cCCeEEEEec
Q 009380          472 DDSCVFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT------GGGQVYVWTS  535 (536)
Q Consensus       472 ~g~~l~~gs~d---g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs------~Dg~v~iW~~  535 (536)
                      .|++|+.++.+   |.|.|||+.+.+++..+....    .+.+.|+| ||.+|+|++      .|+.++||+.
T Consensus       322 ~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  322 HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             CCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence            99998776554   889999999998988887532    24578999 789999887      4678899975

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=9.2e-15  Score=137.47  Aligned_cols=195  Identities=17%  Similarity=0.158  Sum_probs=150.1

Q ss_pred             EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      -+++|++  +|..|++|+.||+++||+...    ...+.....|.+.|.++.|+||+ .+|++.+.| ..+||+.+++..
T Consensus       148 k~vaf~~--~gs~latgg~dg~lRv~~~Ps----~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNG--DGSKLATGGTDGTLRVWEWPS----MLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcC--CCCEeeeccccceEEEEecCc----chhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCch
Confidence            7899999  999999999999999999776    67777888899999999999999 999999999 899999999844


Q ss_pred             EEe---ecCCCceeEEEecCCC--CCE-EEEE-ECCCeEEEEECCCCcc-----ceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          318 DLV---YSSEYAVFSLSQQPNN--VNT-LYFG-EGQGGLNIWDVRSRKS-----ATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       318 ~~~---~~~~~~i~~l~~~~~~--~~~-l~~g-~~dg~i~i~d~~~~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      ...   +..+.....+.|+.++  +.+ +++. ...+.|..||+...+-     ..+...-...|.+++.+++| ++++.
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~Al  298 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLAL  298 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEE
Confidence            322   2334556677777654  122 3322 2345677776653221     11222234579999999988 79999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      |+.||.|-|++..+.+.   ..+.-..|...|+.+.|+|+.+++++.+.|..+.|..+.
T Consensus       299 GT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             eccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            99999999999988641   122223699999999999999999999999998888764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.3e-13  Score=140.69  Aligned_cols=225  Identities=12%  Similarity=0.058  Sum_probs=145.5

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      ..|.+||.+     +.....+..+...+.+.+|+|++ +.|+..+.+   ..|.+||+.++....+....+.+.+..|+|
T Consensus       176 ~~L~~~D~d-----G~~~~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDAD-----GQNAQSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECCC-----CCCceEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence            356666664     34445556777889999999999 888777643   459999999987766655566777899999


Q ss_pred             CCCCEEEEEECCCeEEEEE--CCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380          335 NNVNTLYFGEGQGGLNIWD--VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS  412 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d--~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~  412 (536)
                      ++..++++.+.+|...+|.  +..+. ...+..+........|+|+|..+++++..+|...||.+....   .....+..
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---g~~~~lt~  325 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---GAAQRVTF  325 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC---CceEEEec
Confidence            9944445667777755554  44443 455555555667789999985444454445667777654321   11222222


Q ss_pred             ccCceeEEEEccCCCeEEEEeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC---cEE
Q 009380          413 HKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR---TVE  486 (536)
Q Consensus       413 ~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg---~I~  486 (536)
                      +........|+|+|++|+..+.++   .|.+||+.+++... +....    ..  ..+.|+|||+.|+..+.++   .+.
T Consensus       326 ~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~----~~--~~p~~spdg~~l~~~~~~~g~~~l~  398 (427)
T PRK02889        326 TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT----RD--ESPSFAPNGRYILYATQQGGRSVLA  398 (427)
T ss_pred             CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC----Cc--cCceECCCCCEEEEEEecCCCEEEE
Confidence            233345688999999998877654   59999998765432 22111    11  2267999999988776553   355


Q ss_pred             EEcCCccccceecc
Q 009380          487 VISPAQRRSVATLQ  500 (536)
Q Consensus       487 v~d~~~~~~~~~l~  500 (536)
                      +.+.. +.....+.
T Consensus       399 ~~~~~-g~~~~~l~  411 (427)
T PRK02889        399 AVSSD-GRIKQRLS  411 (427)
T ss_pred             EEECC-CCceEEee
Confidence            66663 44444444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.61  E-value=3.4e-13  Score=138.34  Aligned_cols=222  Identities=14%  Similarity=0.133  Sum_probs=152.6

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      ..|.+||.+     +.....+..|...+.+..|+|+| +.|+..+.   +..|.+||+.++....+..+.+.+...+|+|
T Consensus       182 ~~l~~~d~d-----g~~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQD-----GANVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCC-----CCCcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC
Confidence            478888876     34455666788899999999999 77777664   4689999999988777766777888999999


Q ss_pred             CCCCEEEEEECCCe--EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCC--cEEEEeCCCCCCCCCCcce
Q 009380          335 NNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDG--TACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       335 ~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg--~i~iwdl~~~~~~~~~~~~  409 (536)
                      ++..++++.+.+|.  |++||+.++.. ..+..+........|+|++. .|+..+ .+|  .|++||+..+.     ...
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~-----~~~  328 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN-----PRR  328 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC-----eEE
Confidence            99545556666554  77889887754 44555666677899999985 555444 444  57888876542     233


Q ss_pred             eecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC----
Q 009380          410 VLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT----  482 (536)
Q Consensus       410 ~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d----  482 (536)
                      +..+...+....|+|+|++|+..+.+   ..|.+||+.... ...+....    .  ...+.|+|||+.|+..+.+    
T Consensus       329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~----~--~~~p~~spDG~~i~~~~~~~~~~  401 (435)
T PRK05137        329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGF----L--VEGPTWAPNGRVIMFFRQTPGSG  401 (435)
T ss_pred             eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCC----C--CCCCeECCCCCEEEEEEccCCCC
Confidence            33345566778999999999887654   358888875443 23332111    1  1236799999987765443    


Q ss_pred             --CcEEEEcCCccccceecc
Q 009380          483 --RTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       483 --g~I~v~d~~~~~~~~~l~  500 (536)
                        ..+.++++.++.. ..+.
T Consensus       402 ~~~~L~~~dl~g~~~-~~l~  420 (435)
T PRK05137        402 GAPKLYTVDLTGRNE-REVP  420 (435)
T ss_pred             CcceEEEEECCCCce-EEcc
Confidence              2578888876643 3443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=8.5e-14  Score=129.64  Aligned_cols=257  Identities=14%  Similarity=0.112  Sum_probs=185.2

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC--CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED--NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      ..+|+.++|.-......|...+.+..+..+.+.......  ..+......+.+|..+....   ..|++|-.+|.+.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEEe
Confidence            467888999863344566666677777777776532111  11223445567777777653   5899999999999999


Q ss_pred             CCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCccceeEec---------cCCCeEEEEEe
Q 009380          312 AEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSATEWLL---------HEARINTIDFN  376 (536)
Q Consensus       312 ~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~---------h~~~i~~i~~~  376 (536)
                      ...+.    .........++..+.-++..++++++|+..  ..+.+||+...+.+..-+.         -.-+++++.|.
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            88432    122233446788888888888889999998  8999999998754433221         12357788998


Q ss_pred             cCC-CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380          377 PRN-PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN  455 (536)
Q Consensus       377 p~~-~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  455 (536)
                      +.. .+.||+++.-+.|++||.+...   ..+..+.-...+++++...|+|+.|++|..-+.+..||++.++...... .
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qR---RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~-k  287 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQR---RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL-K  287 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccC---cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecccc-C
Confidence            841 4789999999999999999753   2344444567899999999999999999999999999999877655421 1


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      ...|. +..  +.-+|.+++|++++-|+.|+|+|+.+.++++...
T Consensus       288 g~tGs-irs--ih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  288 GITGS-IRS--IHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             CccCC-cce--EEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            12222 222  4458888999999999999999999977766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.9e-13  Score=137.09  Aligned_cols=220  Identities=10%  Similarity=0.046  Sum_probs=145.5

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC---CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ  291 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~  291 (536)
                      ..|.+||.+......+..+...+.+.+|+|  ||+.|+..+.   +..|.+|++.++.  ...+..+.+   .+..+.|+
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSP--DG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~---~~~~~~~S  251 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPR---HNGAPAFS  251 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcC--CCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCC---CcCCeEEC
Confidence            467788875544444445677899999999  9998886542   3579999987632  122223333   34568999


Q ss_pred             cCCCCEEEE-EECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-CC--eEEEEECCCCccceeEec
Q 009380          292 QYCLSKIFT-SCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-QG--GLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       292 ~~~~~~l~s-~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~  365 (536)
                      |+| +.|+. .+.+|  .|.+||+.++....+..+...+....|+|++ +.|+..+. +|  .|+++|+.++.. ..+..
T Consensus       252 PDG-~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~  328 (429)
T PRK03629        252 PDG-SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAP-QRITW  328 (429)
T ss_pred             CCC-CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCe-EEeec
Confidence            999 66654 45455  5889999998877777666678899999998 66655554 34  455557766543 34443


Q ss_pred             cCCCeEEEEEecCCCCEEEEEe-CC--CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc---EE
Q 009380          366 HEARINTIDFNPRNPNIMATSS-TD--GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT---IG  439 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s-~d--g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~---I~  439 (536)
                      +........|+|+|. +|+..+ .+  ..|.+||+.++.     ...+. .........|+|||++|+.++.++.   +.
T Consensus       329 ~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt-~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~  401 (429)
T PRK03629        329 EGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG-----VQVLT-DTFLDETPSIAPNGTMVIYSSSQGMGSVLN  401 (429)
T ss_pred             CCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCCC-----eEEeC-CCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence            445566789999985 555444 33  358889988753     11221 1223456889999999999988764   67


Q ss_pred             EEeCCCCCcceEE
Q 009380          440 IWSGVNFENTSMI  452 (536)
Q Consensus       440 iwd~~~~~~~~~~  452 (536)
                      ++++. +.....+
T Consensus       402 ~~~~~-G~~~~~l  413 (429)
T PRK03629        402 LVSTD-GRFKARL  413 (429)
T ss_pred             EEECC-CCCeEEC
Confidence            77774 3333333

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=3e-13  Score=138.56  Aligned_cols=215  Identities=14%  Similarity=0.084  Sum_probs=144.6

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ  291 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~  291 (536)
                      ..|.+||........+..+...+.+.+|+|  ||+.|+..+.+   ..|.+|++.++    . ...+..+.+...+..|+
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSp--Dg~~la~~s~~~~~~~l~~~dl~~g----~-~~~l~~~~g~~~~~~~S  256 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSP--DGKKLAYVSFERGRSAIYVQDLATG----Q-RELVASFRGINGAPSFS  256 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCC--CCCEEEEEecCCCCcEEEEEECCCC----C-EEEeccCCCCccCceEC
Confidence            468888875544444455677899999999  99988887643   46999999763    2 22333344455678999


Q ss_pred             cCCCCEEEEEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCe--EEEEECCCCccceeEecc
Q 009380          292 QYCLSKIFTSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGG--LNIWDVRSRKSATEWLLH  366 (536)
Q Consensus       292 ~~~~~~l~s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~--i~i~d~~~~~~~~~~~~h  366 (536)
                      |+|..++++.+.+|  .|.+||+.++....+..+.......+|+|++ ..|++.+ .+|.  |+++|+.+++. ..+..+
T Consensus       257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~  334 (433)
T PRK04922        257 PDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQ  334 (433)
T ss_pred             CCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCCe-EEeecC
Confidence            99933445666666  5999999998877766665566788999998 5665555 4444  77777776653 333333


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCC-C--cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEE
Q 009380          367 EARINTIDFNPRNPNIMATSSTD-G--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGI  440 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~d-g--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~i  440 (536)
                      ......++|+|+|. +++..+.+ +  .|.+||+.+++     .. ...+........|+|+|++|+..+.+   ..|.+
T Consensus       335 g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~-----~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        335 GNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGS-----VR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             CCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCC-----eE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            34455789999985 55544333 2  59999997753     11 22233345567999999988777653   35778


Q ss_pred             EeCCC
Q 009380          441 WSGVN  445 (536)
Q Consensus       441 wd~~~  445 (536)
                      +++..
T Consensus       408 ~~~~g  412 (433)
T PRK04922        408 VSTDG  412 (433)
T ss_pred             EECCC
Confidence            88743

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.59  E-value=3.1e-13  Score=123.77  Aligned_cols=255  Identities=20%  Similarity=0.297  Sum_probs=177.0

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCC------------CCEEEEEEecCC-CCEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHL------------GPISGIVTQQYC-LSKIF  299 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~------------~~V~~l~~~~~~-~~~l~  299 (536)
                      .+-|.+|.|..  +|.+|++|+++|.|.++.-..... +......++.|.            ..|..+.|.+++ ...++
T Consensus        25 adiis~vef~~--~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDH--YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeec--ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            35689999999  999999999999999998664321 122334555553            358889998875 24677


Q ss_pred             EEECCCeEEEEECCCCeE-----------------------------------EEee--cCCCceeEEEecCCCCCEEEE
Q 009380          300 TSCYDGLIRLMDAEKEVF-----------------------------------DLVY--SSEYAVFSLSQQPNNVNTLYF  342 (536)
Q Consensus       300 s~s~dg~I~vwd~~~~~~-----------------------------------~~~~--~~~~~i~~l~~~~~~~~~l~~  342 (536)
                      ..+.|.+|++|.+.....                                   ..++  .|..-|.+|.++.+. ..++ 
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~-Et~l-  180 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK-ETFL-  180 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc-ceEe-
Confidence            788899999998753210                                   1111  366678999999887 4444 


Q ss_pred             EECCCeEEEEECCCCcccee---Eecc-----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-----------C
Q 009380          343 GEGQGGLNIWDVRSRKSATE---WLLH-----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-----------D  403 (536)
Q Consensus       343 g~~dg~i~i~d~~~~~~~~~---~~~h-----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-----------~  403 (536)
                      ...|=.|.+|++.--.....   ++.+     ..-|++..|||...++|+-.+..|+|++.|+|...-           .
T Consensus       181 SADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  181 SADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             eccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            45567899999875433222   2222     346899999998888999999999999999995210           0


Q ss_pred             CCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccC----------CCCceeeeeEEEEcC
Q 009380          404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNN----------QTGRWISSFRAIWGW  471 (536)
Q Consensus       404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~s~  471 (536)
                      .+....++ .--..|..+.|+++|+|+++-.. -+|++||+. ..+++.++....          .......-+.++|+.
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence            00111111 23457899999999999997654 579999994 445555554221          111123346789999


Q ss_pred             CCCEEEEEcCCCcEEEEcCCcc
Q 009380          472 DDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ++.++++|+.++.+++|+...|
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             CcceEecccccceEEEecCCCC
Confidence            9999999999999999996544

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=4.7e-13  Score=137.30  Aligned_cols=216  Identities=13%  Similarity=0.082  Sum_probs=149.4

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC---CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ  291 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~  291 (536)
                      ..|.++|........+..|...+.+.+|+|  ||+.|+..+.   +..|.+||+.++    . ...+..+.+.+....|+
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSp--DG~~lay~s~~~g~~~i~~~dl~~g----~-~~~l~~~~g~~~~~~~S  254 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSP--NRQEITYMSYANGRPRVYLLDLETG----Q-RELVGNFPGMTFAPRFS  254 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECC--CCCEEEEEEecCCCCEEEEEECCCC----c-EEEeecCCCcccCcEEC
Confidence            367777765544444566778999999999  9998887754   468999999863    2 23444566677889999


Q ss_pred             cCCCCEE-EEEECCCe--EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCC--eEEEEECCCCccceeEec
Q 009380          292 QYCLSKI-FTSCYDGL--IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQG--GLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       292 ~~~~~~l-~s~s~dg~--I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg--~i~i~d~~~~~~~~~~~~  365 (536)
                      |+| +.| ++.+.++.  |.+||+.++....+..+.......+|+|++ ..|+..+ .+|  .|+++|+..+.. ..+..
T Consensus       255 PDG-~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~  331 (435)
T PRK05137        255 PDG-RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSNP-RRISF  331 (435)
T ss_pred             CCC-CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCCe-EEeec
Confidence            999 554 56666665  777899988877776666667789999998 5666555 333  688889876543 44443


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC------C
Q 009380          366 HEARINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD------D  436 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d------g  436 (536)
                      +...+....|+|+|. .|+..+.+   ..|.+||+....      .........+..+.|+|||+.|+..+.+      .
T Consensus       332 ~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~------~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~  404 (435)
T PRK05137        332 GGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG------ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAP  404 (435)
T ss_pred             CCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc------eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence            455677789999985 55554433   357888875532      1222223357789999999988776543      2


Q ss_pred             cEEEEeCCCCC
Q 009380          437 TIGIWSGVNFE  447 (536)
Q Consensus       437 ~I~iwd~~~~~  447 (536)
                      .|.++|+....
T Consensus       405 ~L~~~dl~g~~  415 (435)
T PRK05137        405 KLYTVDLTGRN  415 (435)
T ss_pred             eEEEEECCCCc
Confidence            57788876543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=1.9e-12  Score=128.25  Aligned_cols=275  Identities=14%  Similarity=0.169  Sum_probs=176.2

Q ss_pred             cEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380          249 RMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAV  327 (536)
Q Consensus       249 ~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i  327 (536)
                      +++ ++-..+|.|.|.|..+    .+.+..+......-..+.|+||+ +++++++.||.|.++|+.+.+...........
T Consensus         6 ~l~~V~~~~~~~v~viD~~t----~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~   80 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGAT----NKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKVGGNP   80 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-----SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE-SSEE
T ss_pred             cEEEEEecCCCEEEEEECCC----CeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEecCCCc
Confidence            444 4566789999999987    67788887655544557899999 99999999999999999999888777777888


Q ss_pred             eEEEecCCCCCEEEEE-ECCCeEEEEECCCCccceeEecc-------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          328 FSLSQQPNNVNTLYFG-EGQGGLNIWDVRSRKSATEWLLH-------EARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h-------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      .+++++++| ++++++ ...+.+.++|.++.+.+..+...       ...+.+|..+|.++.++++--..+.|-+.|...
T Consensus        81 ~~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   81 RGIAVSPDG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEEE--TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             ceEEEcCCC-CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            999999999 666665 46899999999999988877632       346788888887754555555558888888776


Q ss_pred             CCCCCCCcceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCC--CCc---eeee-eEEEEc--
Q 009380          400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQ--TGR---WISS-FRAIWG--  470 (536)
Q Consensus       400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~--~~~---~~~~-~~~~~s--  470 (536)
                      .+   .................|+|+++|++++ ..++.|.++|..+.+....+.....  .+.   +... +...|.  
T Consensus       160 ~~---~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  160 PK---NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             SS---CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             cc---ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence            42   2233444556677889999999987765 4677899999988776665532111  000   0000 112232  


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE----ccCCeEEEEecC
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA----TGGGQVYVWTSD  536 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg----s~Dg~v~iW~~d  536 (536)
                      ..+...++.-....+.+|+....+.+.++...... .  -+..|| ++.+|...    ...+.|.|+|.+
T Consensus       237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l--Fi~thP-~s~~vwvd~~~~~~~~~v~viD~~  302 (369)
T PF02239_consen  237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L--FIKTHP-DSRYVWVDTFLNPDADTVQVIDKK  302 (369)
T ss_dssp             BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-----EE--T-T-SEEEEE-TT-SSHT-EEEEECC
T ss_pred             cccceecccccCCccccchhhcCeEEEEEECCCCc-c--eeecCC-CCccEEeeccCCCCCceEEEEECc
Confidence            23333323222346778999999999999875444 3  356789 56888887    556889999864

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=3.9e-13  Score=125.28  Aligned_cols=213  Identities=13%  Similarity=0.103  Sum_probs=165.0

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--CeEEE
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--GLIRL  309 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--g~I~v  309 (536)
                      ...+.|-.++...    ..|++|-.+|.+.+|....+......+..+..+ ..+..+.-++..+..+++|+..  ..+.+
T Consensus       103 l~~~~I~gl~~~d----g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki  177 (412)
T KOG3881|consen  103 LGTKSIKGLKLAD----GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI  177 (412)
T ss_pred             cccccccchhhcC----CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence            3466777777753    467788889999999998644323444444444 5577777788776778889998  89999


Q ss_pred             EECCCCeEEEeec----------CCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEec
Q 009380          310 MDAEKEVFDLVYS----------SEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNP  377 (536)
Q Consensus       310 wd~~~~~~~~~~~----------~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p  377 (536)
                      ||++..+.+..-.          ..-.++++.|.+.. .+.|++++.-+.|++||.+.+ +++..+.....+|+++...|
T Consensus       178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p  257 (412)
T KOG3881|consen  178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP  257 (412)
T ss_pred             eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence            9999874332211          12246788888761 278999999999999999976 45888887889999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      .+ +++++|..-|.+..||++.+.   .....+.+..+.|.+|..+|.+.++++++.|..|+|||+.+.+.+..+.
T Consensus       258 ~g-n~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  258 SG-NFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             CC-cEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            77 899999999999999999864   1222355788999999999999999999999999999999866665543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.2e-12  Score=127.38  Aligned_cols=282  Identities=12%  Similarity=0.107  Sum_probs=190.5

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNIT  261 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~  261 (536)
                      +......+..+|||+++...         +-+.-.|++||+..-...+.+.....+..+..... |-.-++.-..|.+|-
T Consensus        50 ~p~ast~ik~s~DGqY~lAt---------G~YKP~ikvydlanLSLKFERhlDae~V~feiLsD-D~SK~v~L~~DR~Ie  119 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLAT---------GTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIE  119 (703)
T ss_pred             CccccceeEecCCCcEEEEe---------cccCCceEEEEcccceeeeeecccccceeEEEecc-chhhheEeecCceee
Confidence            44555678899999998853         55556888898744333333334444433333221 333344444566665


Q ss_pred             EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-CceeEEEecCCCCCEE
Q 009380          262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAVFSLSQQPNNVNTL  340 (536)
Q Consensus       262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~l  340 (536)
                      +..-..     ... .+. -...-..++++.-. .-|+.++....|+-++++.|.+...+..+ +.++++..++-. .+|
T Consensus       120 fHak~G-----~hy-~~R-IP~~GRDm~y~~~s-cDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLl  190 (703)
T KOG2321|consen  120 FHAKYG-----RHY-RTR-IPKFGRDMKYHKPS-CDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLL  190 (703)
T ss_pred             ehhhcC-----eee-eee-cCcCCccccccCCC-ccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceE
Confidence            543321     111 111 11223456666554 45666666778999999999988777655 889999999987 799


Q ss_pred             EEEECCCeEEEEECCCCccceeEec------cCC-----CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380          341 YFGEGQGGLNIWDVRSRKSATEWLL------HEA-----RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       341 ~~g~~dg~i~i~d~~~~~~~~~~~~------h~~-----~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~  409 (536)
                      ++|+.+|.|..||.++...+.++..      |.+     .|+++.|..+| -.+++|..+|.|.|||+|+.+   +....
T Consensus       191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~---pl~~k  266 (703)
T KOG2321|consen  191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASK---PLLVK  266 (703)
T ss_pred             EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCC---ceeec
Confidence            9999999999999998877666542      333     39999999876 789999999999999999853   23333


Q ss_pred             eecccCceeEEEEccCC--CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380          410 VLSHKRAVHSAYFSPSG--SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV  487 (536)
Q Consensus       410 ~~~~~~~v~~l~~sp~g--~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v  487 (536)
                      -.+...+|..+.|.+.+  +.+++ .....++|||-.+++....+.....    +..  +++-|++.+++++..+..+..
T Consensus       267 dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~~----lND--~C~~p~sGm~f~Ane~~~m~~  339 (703)
T KOG2321|consen  267 DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTSD----LND--FCFVPGSGMFFTANESSKMHT  339 (703)
T ss_pred             ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccCC----cCc--eeeecCCceEEEecCCCccee
Confidence            33456688999998853  33443 3456799999999988877754332    222  456688889999999988877


Q ss_pred             EcCCcc
Q 009380          488 ISPAQR  493 (536)
Q Consensus       488 ~d~~~~  493 (536)
                      |-+...
T Consensus       340 yyiP~L  345 (703)
T KOG2321|consen  340 YYIPSL  345 (703)
T ss_pred             EEcccc
Confidence            766543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.53  E-value=3.9e-14  Score=128.83  Aligned_cols=221  Identities=14%  Similarity=0.116  Sum_probs=158.3

Q ss_pred             EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc
Q 009380          287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH  366 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h  366 (536)
                      -.+|+|+| +++++++.- .+.|-|.++-+...++..-..|.-+.|..+...+|.+...++.|.+|++...+-...+...
T Consensus        13 ~c~fSp~g-~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCG-NYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG   90 (447)
T ss_pred             ceeECCCC-Ceeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence            35799999 999999855 7888898887776666666778889999888677778889999999999998888888888


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc---EEEEeC
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT---IGIWSG  443 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~---I~iwd~  443 (536)
                      ...+.+++|+|+|.++|.+...|-.|.+|.+.+.+     ...+...+..+..++|+|+|++.+.++.-..   +.|...
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-----~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-----GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC  165 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccce-----eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence            89999999999998899999999999999998832     2222233456688999999999888875433   222222


Q ss_pred             CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC--CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEE
Q 009380          444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT--RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL  521 (536)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d--g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l  521 (536)
                      .....+..+....     +....+.|+|||..|++-..-  -.|..|....             .+ -.+.|+|.+ ++|
T Consensus       166 ~~W~ll~~f~~dT-----~DltgieWsPdg~~laVwd~~Leykv~aYe~~l-------------G~-k~v~wsP~~-qfl  225 (447)
T KOG4497|consen  166 KAWILLKEFKLDT-----IDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL-------------GL-KFVEWSPCN-QFL  225 (447)
T ss_pred             HHHHHHHhcCCCc-----ccccCceECCCCcEEEEecchhhheeeeeeecc-------------ce-eEEEecccc-ceE
Confidence            2222232222111     112227799999887764221  1222222111             11 357899964 999


Q ss_pred             EEEccCCeEEEEe
Q 009380          522 AGATGGGQVYVWT  534 (536)
Q Consensus       522 asgs~Dg~v~iW~  534 (536)
                      +.|+.|+.++|-+
T Consensus       226 avGsyD~~lrvln  238 (447)
T KOG4497|consen  226 AVGSYDQMLRVLN  238 (447)
T ss_pred             Eeeccchhhhhhc
Confidence            9999999998743

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.53  E-value=2.6e-12  Score=115.62  Aligned_cols=226  Identities=19%  Similarity=0.204  Sum_probs=161.3

Q ss_pred             ccceEEeccccc---Cc-cccccccCCceEEEEEEec-CCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----
Q 009380          213 VGSCVDIGSLTL---KP-ENIARIMPGRITQMKFLPC-SDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----  282 (536)
Q Consensus       213 ~dg~v~lw~~~~---~~-~~~~~~~~~~I~~v~~~p~-~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----  282 (536)
                      ..|.+.||++..   -+ ..+...-...++.+.|.-. .+|. .++-+...|+|.++..+..    .....+.+-+    
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~----~ss~~L~~ls~~ki  119 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED----ESSVHLRGLSSKKI  119 (339)
T ss_pred             eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccc----eeeeeecccchhhh
Confidence            457888888632   22 1222333567888888743 2455 5666778899999988752    2222222211    


Q ss_pred             --CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE---EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC
Q 009380          283 --GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD---LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR  357 (536)
Q Consensus       283 --~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~---~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~  357 (536)
                        ....++.|++.+ ..++++..+|.+.+-+.....+.   ....|+.+++...|+...++++++|+.||.+..||+|..
T Consensus       120 ~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p  198 (339)
T KOG0280|consen  120 SVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP  198 (339)
T ss_pred             hheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence              124578899888 88999999999986665554333   455788999999999999999999999999999999944


Q ss_pred             c-ccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEeC
Q 009380          358 K-SATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTSF  434 (536)
Q Consensus       358 ~-~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s~  434 (536)
                      + .+.. .+.|...|.+|.-+|..+.+++||+.|-.|++||.|+..    +++....-.+.|+.+.++|.- ..++.++.
T Consensus       199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~----kPl~~~~v~GGVWRi~~~p~~~~~lL~~CM  274 (339)
T KOG0280|consen  199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG----KPLFKAKVGGGVWRIKHHPEIFHRLLAACM  274 (339)
T ss_pred             cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc----CccccCccccceEEEEecchhhhHHHHHHH
Confidence            3 3333 457999999999999888999999999999999999753    444444556999999999932 33444454


Q ss_pred             CCcEEEEeCCCCC
Q 009380          435 DDTIGIWSGVNFE  447 (536)
Q Consensus       435 dg~I~iwd~~~~~  447 (536)
                      -+-.+|-+.....
T Consensus       275 h~G~ki~~~~~~~  287 (339)
T KOG0280|consen  275 HNGAKILDSSDKV  287 (339)
T ss_pred             hcCceEEEecccc
Confidence            4447777776543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.7e-12  Score=130.10  Aligned_cols=220  Identities=14%  Similarity=0.111  Sum_probs=138.5

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ  291 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~  291 (536)
                      ..|.++|.+.........+.+.+.+.+|+|  ||+.|+..+.+   ..|.+||+.++    .. ..+....+.+.+..|+
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSP--DG~~la~~s~~~~~~~I~~~dl~~g----~~-~~l~~~~g~~~~~~~S  248 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSP--DGTKLAYVSFESKKPVVYVHDLATG----RR-RVVANFKGSNSAPAWS  248 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcC--CCCEEEEEEccCCCcEEEEEECCCC----CE-EEeecCCCCccceEEC
Confidence            356666654333333445678899999999  99988877643   35999999863    22 2233334556789999


Q ss_pred             cCCCCEE-EEEECCCeEEEE--ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEEC--CCCccceeEec
Q 009380          292 QYCLSKI-FTSCYDGLIRLM--DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDV--RSRKSATEWLL  365 (536)
Q Consensus       292 ~~~~~~l-~s~s~dg~I~vw--d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~--~~~~~~~~~~~  365 (536)
                      |++ +.| ++.+.+|...+|  |+.++....+..+........|+|++ ..|+..+ .+|...+|.+  .++.. ..+..
T Consensus       249 PDG-~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG-~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~  325 (427)
T PRK02889        249 PDG-RTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDG-RSIYFTSDRGGAPQIYRMPASGGAA-QRVTF  325 (427)
T ss_pred             CCC-CEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCC-CEEEEEecCCCCcEEEEEECCCCce-EEEec
Confidence            999 655 467778876665  55566655555555556778999999 5555444 4566666654  44432 23322


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC---cEE
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIG  439 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~  439 (536)
                      +........|+|+| ++|+..+.++   .|.+||+.++.     ...+. .........|+|+|++|+.++.++   .+.
T Consensus       326 ~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~-----~~~lt-~~~~~~~p~~spdg~~l~~~~~~~g~~~l~  398 (427)
T PRK02889        326 TGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ-----VTALT-DTTRDESPSFAPNGRYILYATQQGGRSVLA  398 (427)
T ss_pred             CCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC-----eEEcc-CCCCccCceECCCCCEEEEEEecCCCEEEE
Confidence            33344567899988 5666555443   59999998753     11122 223346789999999888877544   255


Q ss_pred             EEeCCCCCcceEE
Q 009380          440 IWSGVNFENTSMI  452 (536)
Q Consensus       440 iwd~~~~~~~~~~  452 (536)
                      +.++ ++.....+
T Consensus       399 ~~~~-~g~~~~~l  410 (427)
T PRK02889        399 AVSS-DGRIKQRL  410 (427)
T ss_pred             EEEC-CCCceEEe
Confidence            5555 34333333

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.51  E-value=2.1e-11  Score=120.92  Aligned_cols=304  Identities=14%  Similarity=0.129  Sum_probs=183.1

Q ss_pred             cccccceEEecccccCcccccccc-CCce-EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIM-PGRI-TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~-~~~I-~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      ....+|.|.+.|...... +.+.. .+.+ ..+.|+|  ||+++++.+.||.|.++|+.+    .+.+..++.-. ...+
T Consensus        11 ~~~~~~~v~viD~~t~~~-~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~----~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNKV-VARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLAT----GKVVATIKVGG-NPRG   82 (369)
T ss_dssp             EEGGGTEEEEEETTT-SE-EEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTS----SSEEEEEE-SS-EEEE
T ss_pred             EecCCCEEEEEECCCCeE-EEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCc----ccEEEEEecCC-Ccce
Confidence            345667888888644321 21221 2333 4577899  999999999999999999998    67777776544 4678


Q ss_pred             EEEecCCCCEEEEEE-CCCeEEEEECCCCeEEEeec--------CCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCC
Q 009380          288 IVTQQYCLSKIFTSC-YDGLIRLMDAEKEVFDLVYS--------SEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSR  357 (536)
Q Consensus       288 l~~~~~~~~~l~s~s-~dg~I~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~  357 (536)
                      ++++++| ++++++. ..+.+.++|.++.+......        ....+..+..++.. ..+++.- ..+.|.+.|....
T Consensus        83 i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   83 IAVSPDG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEE--TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTS
T ss_pred             EEEcCCC-CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccc
Confidence            9999999 7777665 68999999999876655442        23467788888877 4455444 4589999998876


Q ss_pred             ccce-eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----cccCceeEE-------EEcc-
Q 009380          358 KSAT-EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----SHKRAVHSA-------YFSP-  424 (536)
Q Consensus       358 ~~~~-~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~~~~~v~~l-------~~sp-  424 (536)
                      +.+. .............|.|++.+++++...+..|-++|..+.+    ....+.    .|..++..+       .|.- 
T Consensus       161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             cccceeeecccccccccccCcccceeeecccccceeEEEeeccce----EEEEeeccccccccccccccCCCcceEEeec
Confidence            5432 2223456778899999885556666677889999988753    111111    233333222       2222 


Q ss_pred             -CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE----cCCCcEEEEcCCccccceec
Q 009380          425 -SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG----NMTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       425 -~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g----s~dg~I~v~d~~~~~~~~~l  499 (536)
                       .+...++.-..+.+.+||..+++.+..+...... .  .   +..+|+++++++.    ...+.|.|+|..+.+.+.++
T Consensus       237 ~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l--F---i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i  310 (369)
T PF02239_consen  237 GLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L--F---IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI  310 (369)
T ss_dssp             BSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H
T ss_pred             cccceecccccCCccccchhhcCeEEEEEECCCCc-c--e---eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE
Confidence             2333323333446778999999998888754322 1  1   4459999999998    34488999999999887777


Q ss_pred             cCCceeeeeeeEeecCCCCCEEEEEc--cCCeEEEEec
Q 009380          500 QSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTS  535 (536)
Q Consensus       500 ~~~~~~~~~~~~~~~p~~~~~lasgs--~Dg~v~iW~~  535 (536)
                      ....... ...+.|++ +|..+....  .+|.|.|||.
T Consensus       311 ~~~~~~~-~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~  346 (369)
T PF02239_consen  311 TPGPGKR-VVHMEFNP-DGKEVWVSVWDGNGAIVVYDA  346 (369)
T ss_dssp             HHHHT---EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred             eccCCCc-EeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence            5322211 34678888 566544433  3447999985

...

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=4.5e-13  Score=129.48  Aligned_cols=170  Identities=15%  Similarity=0.135  Sum_probs=131.8

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC---------
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE---------  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~---------  315 (536)
                      .+--|+.|-..|.|.+.|....+  ...+....  -....|+|+.|-|.+..+++.+-.+|.+.+||.+-.         
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~--~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFE--VSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCcceEEeeccCceEEecchhhH--HHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            56678888888999999877521  11111111  123679999999988788999999999999986420         


Q ss_pred             ------eEE--------------EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEE
Q 009380          316 ------VFD--------------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDF  375 (536)
Q Consensus       316 ------~~~--------------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~  375 (536)
                            .+.              ...-..+.|..++|+|++ .+|++.+.||.++|||..+.+.+..++.--+...|++|
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcW  340 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCW  340 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEE
Confidence                  000              011134578999999988 89999999999999999998887777767788999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc
Q 009380          376 NPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP  424 (536)
Q Consensus       376 ~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp  424 (536)
                      +||| ++|++|++|..|.||.+...+    .+..-.+|+.+|+.++|+|
T Consensus       341 SPDG-KyIvtGGEDDLVtVwSf~erR----VVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  341 SPDG-KYIVTGGEDDLVTVWSFEERR----VVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCc-cEEEecCCcceEEEEEeccce----EEEeccccccceeeEeecc
Confidence            9998 799999999999999998742    4444558999999999983

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.49  E-value=1.1e-11  Score=127.00  Aligned_cols=215  Identities=12%  Similarity=0.058  Sum_probs=144.5

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      ..|.++|...     .....+..+...+....|+|++ ++|+.++.+   ..|++||+.++....+..+...+.+++|+|
T Consensus       170 ~~l~~~d~~g-----~~~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~sp  243 (417)
T TIGR02800       170 YELQVADYDG-----ANPQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSP  243 (417)
T ss_pred             ceEEEEcCCC-----CCCEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECC
Confidence            3577777753     3344455667788999999999 888777654   479999999887766666667778899999


Q ss_pred             CCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCccee
Q 009380          335 NNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       335 ~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~  410 (536)
                      ++..++++.+.++  .|++||+.++.. ..+..+........|+|++..++++...++  .|+++|+.+++     ...+
T Consensus       244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l  317 (417)
T TIGR02800       244 DGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-----VRRL  317 (417)
T ss_pred             CCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEe
Confidence            9844445555444  588999887653 334444455567799998854444444444  57777877542     2333


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC---c
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR---T  484 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg---~  484 (536)
                      ..+...+..+.|+|+|++|+.++.++   .|.+||+.++.. ..+....   .   ...+.|+|+|++|+..+.++   .
T Consensus       318 ~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~---~---~~~p~~spdg~~l~~~~~~~~~~~  390 (417)
T TIGR02800       318 TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG---L---DESPSFAPNGRMILYATTRGGRGV  390 (417)
T ss_pred             ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC---C---CCCceECCCCCEEEEEEeCCCcEE
Confidence            34556677889999999999888776   799999877433 2222111   1   12257999999888776654   3


Q ss_pred             EEEEcCC
Q 009380          485 VEVISPA  491 (536)
Q Consensus       485 I~v~d~~  491 (536)
                      +.+++..
T Consensus       391 l~~~~~~  397 (417)
T TIGR02800       391 LGLVSTD  397 (417)
T ss_pred             EEEEECC
Confidence            5555543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.8e-11  Score=125.38  Aligned_cols=235  Identities=13%  Similarity=0.042  Sum_probs=145.4

Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CC--eEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~  335 (536)
                      .|.++|.+.     .....+..+...+.+..|+|+| +.|+..+. ++  .|.+||+.++....+...........|+|+
T Consensus       199 ~l~i~d~dG-----~~~~~l~~~~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD  272 (448)
T PRK04792        199 QLMIADYDG-----YNEQMLLRSPEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD  272 (448)
T ss_pred             EEEEEeCCC-----CCceEeecCCCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence            566777663     3334455567789999999999 77766554 33  588999988876555544455567899999


Q ss_pred             CCCEEEEEECCCe--EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCcceee
Q 009380          336 NVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       336 ~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~~  411 (536)
                      +..++++...+|.  |+++|+.+++. ..+..+.......+|+|++..+++++..++.  |+++|+.+++     ...+.
T Consensus       273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-----~~~Lt  346 (448)
T PRK04792        273 GKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-----VSRLT  346 (448)
T ss_pred             CCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEEe
Confidence            9545555666664  88889887654 3444455566788999998655555544444  6666776542     22222


Q ss_pred             cccCceeEEEEccCCCeEEEEeCC-C--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-C--cE
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFD-D--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-R--TV  485 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g--~I  485 (536)
                      ..........|+|+|++|+..+.+ +  .|.++|+.+++.. .+.... .     .....|+|+|+.|+..+.+ +  .+
T Consensus       347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~-----d~~ps~spdG~~I~~~~~~~g~~~l  419 (448)
T PRK04792        347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-L-----DESPSVAPNGTMVIYSTTYQGKQVL  419 (448)
T ss_pred             cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-C-----CCCceECCCCCEEEEEEecCCceEE
Confidence            222233457899999988877653 3  4666787766532 221111 0     1125699999987765543 3  37


Q ss_pred             EEEcCCccccceeccCCceeeeeeeEeecC
Q 009380          486 EVISPAQRRSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      .+++.. +.....+..+....  ...+|+|
T Consensus       420 ~~~~~~-G~~~~~l~~~~g~~--~~p~Wsp  446 (448)
T PRK04792        420 AAVSID-GRFKARLPAGQGEV--KSPAWSP  446 (448)
T ss_pred             EEEECC-CCceEECcCCCCCc--CCCccCC
Confidence            777774 44555554332211  2345665

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.47  E-value=2.1e-12  Score=116.35  Aligned_cols=157  Identities=15%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             eEEEecCCCCCEEEEEEC---------CCeEEEEECCC-CccceeEec-cCCCeEEEEEecCCCCEEEE-EeCCCcEEEE
Q 009380          328 FSLSQQPNNVNTLYFGEG---------QGGLNIWDVRS-RKSATEWLL-HEARINTIDFNPRNPNIMAT-SSTDGTACIW  395 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~---------dg~i~i~d~~~-~~~~~~~~~-h~~~i~~i~~~p~~~~~l~s-~s~dg~i~iw  395 (536)
                      ..+.|+++|..+++....         -|...+|.++. +..+..+.. ..++|.+++|+|++..++++ |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467888888444444431         23456666543 233555543 34579999999988544333 4467899999


Q ss_pred             eCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          396 DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                      |++.      ...... +...++.+.|+|+|++|++++.+   |.|.+||+++.+.+....+..       +..+.|+|+
T Consensus        89 d~~~------~~i~~~-~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-------~t~~~WsPd  154 (194)
T PF08662_consen   89 DVKG------KKIFSF-GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-------ATDVEWSPD  154 (194)
T ss_pred             cCcc------cEeEee-cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-------EEEEEEcCC
Confidence            9973      222222 35678899999999999998754   569999999877776664432       234789999


Q ss_pred             CCEEEEEcC------CCcEEEEcCCccccceec
Q 009380          473 DSCVFIGNM------TRTVEVISPAQRRSVATL  499 (536)
Q Consensus       473 g~~l~~gs~------dg~I~v~d~~~~~~~~~l  499 (536)
                      |++|+++..      |+.++||+..+ +.+...
T Consensus       155 Gr~~~ta~t~~r~~~dng~~Iw~~~G-~~l~~~  186 (194)
T PF08662_consen  155 GRYLATATTSPRLRVDNGFKIWSFQG-RLLYKK  186 (194)
T ss_pred             CCEEEEEEeccceeccccEEEEEecC-eEeEec
Confidence            999998864      67899999864 455443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.47  E-value=4.5e-11  Score=115.26  Aligned_cols=313  Identities=12%  Similarity=0.132  Sum_probs=206.4

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC------
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL------  257 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d------  257 (536)
                      -.+..+.+||-|.+++.....+++           +|.-.... .+.+.-...|..+.|+|  .++||.+=+..      
T Consensus        33 ~p~~~~~~SP~G~~l~~~~~~~V~-----------~~~g~~~~-~l~~~~~~~V~~~~fSP--~~kYL~tw~~~pi~~pe   98 (561)
T COG5354          33 WPVAYVSESPLGTYLFSEHAAGVE-----------CWGGPSKA-KLVRFRHPDVKYLDFSP--NEKYLVTWSREPIIEPE   98 (561)
T ss_pred             cchhheeecCcchheehhhccceE-----------Eccccchh-heeeeecCCceecccCc--ccceeeeeccCCccChh
Confidence            456788999999999977544444           44432222 22344445689999999  99999986433      


Q ss_pred             ---------CcEEEEECCCCCCCCCceEEeccCCCC--EE-EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---
Q 009380          258 ---------GNITFWNLDSQQDEDNGIYLFRTHLGP--IS-GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---  322 (536)
Q Consensus       258 ---------g~v~iwd~~~~~~~~~~~~~~~~h~~~--V~-~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---  322 (536)
                               .++.+||..+    +..+..+..-..+  .+ -+.|+-+. .+++-. ....+.|+++ +......--   
T Consensus        99 ~e~sp~~~~n~~~vwd~~s----g~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~l  171 (561)
T COG5354          99 IEISPFTSKNNVFVWDIAS----GMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKNL  171 (561)
T ss_pred             hccCCccccCceeEEeccC----ceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhhc
Confidence                     3599999998    7788888776665  55 67888876 665555 4557999997 433221111   


Q ss_pred             CCCceeEEEecCCCC-CEEEE-----EECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC--------
Q 009380          323 SEYAVFSLSQQPNNV-NTLYF-----GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST--------  388 (536)
Q Consensus       323 ~~~~i~~l~~~~~~~-~~l~~-----g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~--------  388 (536)
                      ....|....|+|.+. ..|+.     .+..+.+++|.+..+..+.+-....-.=..+.|++.|..+++-.-.        
T Consensus       172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsy  251 (561)
T COG5354         172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSY  251 (561)
T ss_pred             cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccce
Confidence            135788889998742 23333     3467899999998776655544344444568888877543332211        


Q ss_pred             --CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          389 --DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       389 --dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                        ...++|++++...    .... ....++|...+|.|.++.+++++  .+..+.++|++.. ....+.    ....-+ 
T Consensus       252 fgesnLyl~~~~e~~----i~V~-~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P----e~~rNT-  320 (561)
T COG5354         252 FGESNLYLLRITERS----IPVE-KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP----EQKRNT-  320 (561)
T ss_pred             eccceEEEEeecccc----ccee-ccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC----Cccccc-
Confidence              2468888887522    2222 26689999999999888777765  6788999998764 222221    111111 


Q ss_pred             eEEEEcCCCCEEEEEcCC---CcEEEEcCCccccce-eccCCceeeeeeeEeecCCCCCEEEEEc------cCCeEEEEe
Q 009380          465 FRAIWGWDDSCVFIGNMT---RTVEVISPAQRRSVA-TLQSPYISAIPCRFHAHPHQVGTLAGAT------GGGQVYVWT  534 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~~~~~-~l~~~~~~~~~~~~~~~p~~~~~lasgs------~Dg~v~iW~  534 (536)
                        ..|+|.+++++.++.+   |.|.+||..+...+. .+.+...    ....|+| ++.++.+..      .|..|.||+
T Consensus       321 --~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~----s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~  393 (561)
T COG5354         321 --IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT----SYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWD  393 (561)
T ss_pred             --ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc----eEeeccC-CceEEEecCCCcccccCcceEEEE
Confidence              5689999998886655   789999998765544 5544222    2346888 667777654      678899998


Q ss_pred             c
Q 009380          535 S  535 (536)
Q Consensus       535 ~  535 (536)
                      +
T Consensus       394 v  394 (561)
T COG5354         394 V  394 (561)
T ss_pred             e
Confidence            6

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.47  E-value=3.9e-11  Score=109.29  Aligned_cols=175  Identities=17%  Similarity=0.195  Sum_probs=130.2

Q ss_pred             cceEEecccccCcccc-ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC--CCEEEEEE
Q 009380          214 GSCVDIGSLTLKPENI-ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL--GPISGIVT  290 (536)
Q Consensus       214 dg~v~lw~~~~~~~~~-~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~  290 (536)
                      .+.|.+||- .+...+ .-....+|.+|.+.+    ..|++.- .+.|.||...+.   .+.++.+..-.  ..+.+++-
T Consensus        74 pNkviIWDD-~k~~~i~el~f~~~I~~V~l~r----~riVvvl-~~~I~VytF~~n---~k~l~~~et~~NPkGlC~~~~  144 (346)
T KOG2111|consen   74 PNKVIIWDD-LKERCIIELSFNSEIKAVKLRR----DRIVVVL-ENKIYVYTFPDN---PKLLHVIETRSNPKGLCSLCP  144 (346)
T ss_pred             CceEEEEec-ccCcEEEEEEeccceeeEEEcC----CeEEEEe-cCeEEEEEcCCC---hhheeeeecccCCCceEeecC
Confidence            468999993 443333 344589999999987    4565555 468999999853   34444443322  22333333


Q ss_pred             ecCCCCEEEE-EECCCeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCe-EEEEECCCCccceeEec
Q 009380          291 QQYCLSKIFT-SCYDGLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG-LNIWDVRSRKSATEWLL  365 (536)
Q Consensus       291 ~~~~~~~l~s-~s~dg~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~  365 (536)
                      +... .+|+. |-.-|.|+|-|+.....   ..+..|+..|.|++.+.+| .++++++..|+ |+|||..+|..++++..
T Consensus       145 ~~~k-~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E~RR  222 (346)
T KOG2111|consen  145 TSNK-SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQELRR  222 (346)
T ss_pred             CCCc-eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence            3222 33333 33469999999987655   7788999999999999999 89999999997 79999999999999873


Q ss_pred             --cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          366 --HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       366 --h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                        ....|.+|+|+|+. .+|+++|..|+|+||.++..
T Consensus       223 G~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  223 GVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence              34679999999977 79999999999999999874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=4.1e-11  Score=123.12  Aligned_cols=222  Identities=10%  Similarity=0.012  Sum_probs=144.2

Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~  335 (536)
                      .|.++|.+.     .....+..+...+....|+|+| +.|+..+.+   ..|.+||+.++....+....+.+....|+|+
T Consensus       180 ~l~~~d~~g-----~~~~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD  253 (430)
T PRK00178        180 TLQRSDYDG-----ARAVTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD  253 (430)
T ss_pred             EEEEECCCC-----CCceEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC
Confidence            466777763     3344555677889999999999 777766544   3699999998877666655566678999999


Q ss_pred             CCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceee
Q 009380          336 NVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       336 ~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      +..++++...+|  .|++||+.+++. ..+..+........|+|++..++++...+|  .|+++|+.+++     ...+.
T Consensus       254 G~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-----~~~lt  327 (430)
T PRK00178        254 GSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-----AERVT  327 (430)
T ss_pred             CCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-----EEEee
Confidence            844444555555  688889988764 344445555677899999865555554444  47777776643     11121


Q ss_pred             cccCceeEEEEccCCCeEEEEeCC-C--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcE
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFD-D--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTV  485 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I  485 (536)
                      ..........|+|+|++|+..+.+ +  .|.+||+.+++.. .+....   ..   ....|+|+|+.|+..+.+   ..|
T Consensus       328 ~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~---~~---~~p~~spdg~~i~~~~~~~g~~~l  400 (430)
T PRK00178        328 FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTS---LD---ESPSVAPNGTMLIYATRQQGRGVL  400 (430)
T ss_pred             cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCC---CC---CCceECCCCCEEEEEEecCCceEE
Confidence            112233457899999998887653 3  4888998876542 222211   11   125799999998776544   347


Q ss_pred             EEEcCCccccceecc
Q 009380          486 EVISPAQRRSVATLQ  500 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~  500 (536)
                      .+++.... ....+.
T Consensus       401 ~~~~~~g~-~~~~l~  414 (430)
T PRK00178        401 MLVSINGR-VRLPLP  414 (430)
T ss_pred             EEEECCCC-ceEECc
Confidence            77777544 333443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=5.8e-11  Score=117.77  Aligned_cols=279  Identities=14%  Similarity=0.180  Sum_probs=169.7

Q ss_pred             EEEEeCC----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----CCeEEEEECCC--CeEEEe
Q 009380          251 VVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----DGLIRLMDAEK--EVFDLV  320 (536)
Q Consensus       251 l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----dg~I~vwd~~~--~~~~~~  320 (536)
                      +++|+..    +.|.+|+++........+..+ .-......++++|++ ++|+++..    ++.|..|++..  +.+..+
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~   79 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL   79 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence            4455555    789999995432112222222 234456778999998 89998877    57999998875  444332


Q ss_pred             e---cCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCC-cccee---Ee----------ccCCCeEEEEEecCCCCE
Q 009380          321 Y---SSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSR-KSATE---WL----------LHEARINTIDFNPRNPNI  382 (536)
Q Consensus       321 ~---~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~-~~~~~---~~----------~h~~~i~~i~~~p~~~~~  382 (536)
                      .   ........++++|++ .+|+++. .+|.|.++++... .....   +.          .......++.|+|++..+
T Consensus        80 ~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v  158 (345)
T PF10282_consen   80 NSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV  158 (345)
T ss_dssp             EEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred             eeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence            2   244566789999998 6776665 5899999999873 33221   21          123457899999998544


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcce-eecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCC--CCC--cceEEecc-
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMK-VLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGV--NFE--NTSMIHHN-  455 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~--~~~--~~~~~~~~-  455 (536)
                      +++.-....|.+|++......-..... .........++.|+|+++++++.+ .++.|.+|++.  ++.  ....+... 
T Consensus       159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP  238 (345)
T ss_dssp             EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred             EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence            444434568999999774311000111 124566789999999999887665 57789999987  332  12222211 


Q ss_pred             -CCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcCCc--cc--cceeccCCceeeeeeeEeecCCCCCEEEEEc-cCC
Q 009380          456 -NQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISPAQ--RR--SVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGG  528 (536)
Q Consensus       456 -~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~--~~--~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-~Dg  528 (536)
                       ...+. ...-.+.++|||++|++++. .+.|.+|++..  +.  .+..+...  ...+..+.++| ++++|++++ .++
T Consensus       239 ~~~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~-~g~~l~Va~~~s~  314 (345)
T PF10282_consen  239 EGFTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSP-DGRYLYVANQDSN  314 (345)
T ss_dssp             TTSCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-T-TSSEEEEEETTTT
T ss_pred             cccccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCccEEEEeC-CCCEEEEEecCCC
Confidence             11111 12233668999999888765 46799999832  32  22222221  22345788888 567777665 778


Q ss_pred             eEEEEecC
Q 009380          529 QVYVWTSD  536 (536)
Q Consensus       529 ~v~iW~~d  536 (536)
                      .|.+|++|
T Consensus       315 ~v~vf~~d  322 (345)
T PF10282_consen  315 TVSVFDID  322 (345)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.45  E-value=1.4e-10  Score=115.17  Aligned_cols=276  Identities=12%  Similarity=0.174  Sum_probs=173.0

Q ss_pred             ccceEEecccccCccccccc----cCCceEEEEEEecCCccEEEEEeC----CCcEEEEECCCCCCCCCceEEeccCCCC
Q 009380          213 VGSCVDIGSLTLKPENIARI----MPGRITQMKFLPCSDVRMVVAGSK----LGNITFWNLDSQQDEDNGIYLFRTHLGP  284 (536)
Q Consensus       213 ~dg~v~lw~~~~~~~~~~~~----~~~~I~~v~~~p~~~~~~l~tg~~----dg~v~iwd~~~~~~~~~~~~~~~~h~~~  284 (536)
                      ..+.|..|+++.....+...    .......++++|  ++++|.+...    +|.|..|.+.........+.........
T Consensus        11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~--~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~   88 (345)
T PF10282_consen   11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSP--DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS   88 (345)
T ss_dssp             SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-T--TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred             CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEe--CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence            33677777774333322211    245567789999  8888888866    5799999988632112333344434556


Q ss_pred             EEEEEEecCCCCEEEEEEC-CCeEEEEECCC-CeEEEe---ec-----------CCCceeEEEecCCCCCEEEEEE-CCC
Q 009380          285 ISGIVTQQYCLSKIFTSCY-DGLIRLMDAEK-EVFDLV---YS-----------SEYAVFSLSQQPNNVNTLYFGE-GQG  347 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~-~~~~~~---~~-----------~~~~i~~l~~~~~~~~~l~~g~-~dg  347 (536)
                      ...++++|++ .+|+++.+ +|.|.++++.. +.+...   ..           ......++.++|++ +++++.. ...
T Consensus        89 p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D  166 (345)
T PF10282_consen   89 PCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGAD  166 (345)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTT
T ss_pred             cEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCC
Confidence            6789999999 88888875 89999999986 433222   21           22456789999998 6666654 345


Q ss_pred             eEEEEECCCCcc-c---eeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc--eee----cccCc
Q 009380          348 GLNIWDVRSRKS-A---TEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KVL----SHKRA  416 (536)
Q Consensus       348 ~i~i~d~~~~~~-~---~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~--~~~----~~~~~  416 (536)
                      .|.+|++..... +   ..+. .....-..+.|+|++..++++...++.|.+|++...........  ...    .....
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            899999976552 2   2222 34566789999999866667777789999999883221000111  111    11226


Q ss_pred             eeEEEEccCCCeEEEEe-CCCcEEEEeCCCC-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcC--C
Q 009380          417 VHSAYFSPSGSSLATTS-FDDTIGIWSGVNF-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISP--A  491 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~--~  491 (536)
                      ...|.++|+|++|+++. ..+.|.+|++... ..+..+......+.....  +.++|+|++|++++. ++.|.+|++  .
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~--~~~s~~g~~l~Va~~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRH--FAFSPDGRYLYVANQDSNTVSVFDIDPD  324 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEE--EEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccE--EEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence            78899999999888776 5678999999432 233333222112322222  667999999998875 478999976  4


Q ss_pred             ccc
Q 009380          492 QRR  494 (536)
Q Consensus       492 ~~~  494 (536)
                      +|.
T Consensus       325 tG~  327 (345)
T PF10282_consen  325 TGK  327 (345)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            553

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.45  E-value=3.7e-12  Score=116.83  Aligned_cols=247  Identities=14%  Similarity=0.186  Sum_probs=170.4

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEecccccCcc------cccccc------------CCceEEEEEEe
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------NIARIM------------PGRITQMKFLP  244 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------~~~~~~------------~~~I~~v~~~p  244 (536)
                      .+-+.++.|..+|..|++          +..+|.|.++.-.....      ...+.|            ...|..+.|.+
T Consensus        25 adiis~vef~~~Ge~Lat----------GdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~   94 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLAT----------GDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD   94 (433)
T ss_pred             hcceeeEEeecccceEee----------cCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC
Confidence            467889999999999994          46667777775321110      111222            46799999999


Q ss_pred             cCCccEEEEEeCCCcEEEEECCCCCCCC-------------------------------CceEE-eccCCCCEEEEEEec
Q 009380          245 CSDVRMVVAGSKLGNITFWNLDSQQDED-------------------------------NGIYL-FRTHLGPISGIVTQQ  292 (536)
Q Consensus       245 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~-------------------------------~~~~~-~~~h~~~V~~l~~~~  292 (536)
                      ..+...++..+.|.+|++|.+.......                               .+.+. -.+|+-.|++|.++.
T Consensus        95 ~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns  174 (433)
T KOG1354|consen   95 DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS  174 (433)
T ss_pred             CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC
Confidence            6666778888899999999987432100                               00011 135788899999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCC--CeE--EEeec-----CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----
Q 009380          293 YCLSKIFTSCYDGLIRLMDAEK--EVF--DLVYS-----SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----  359 (536)
Q Consensus       293 ~~~~~l~s~s~dg~I~vwd~~~--~~~--~~~~~-----~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----  359 (536)
                      |. ..++++. |=.|.+|+++-  +.+  .-+..     ...-|++..|+|..-++++-.+..|+|++.|+|....    
T Consensus       175 D~-Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  175 DK-ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             cc-ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence            97 7777775 77899999874  222  22222     2356899999999888899999999999999995322    


Q ss_pred             ceeEe------------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-eccc------------
Q 009380          360 ATEWL------------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHK------------  414 (536)
Q Consensus       360 ~~~~~------------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~------------  414 (536)
                      ...+.            .--..|..+.|++.| +++++-+. -+|++||+....    .+..+ .-|.            
T Consensus       253 sKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~----~pv~t~~vh~~lr~kLc~lYEn  326 (433)
T KOG1354|consen  253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEA----KPVETYPVHEYLRSKLCSLYEN  326 (433)
T ss_pred             hhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccC----CcceEEeehHhHHHHHHHHhhc
Confidence            11111            122458899999977 78887654 589999996532    22222 2221            


Q ss_pred             Cc---eeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          415 RA---VHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       415 ~~---v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      ..   -..++|+.++.+++||++.+..++|++..+.
T Consensus       327 D~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  327 DAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             cchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            12   2458899899999999999999999976553

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.45  E-value=2.7e-11  Score=124.07  Aligned_cols=212  Identities=15%  Similarity=0.155  Sum_probs=142.7

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ  291 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~  291 (536)
                      ..|.++|........+..+...+.+.+|+|  +|++|+.+...   ..|++|++.++    . ...+..+.+.+.++.|+
T Consensus       170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Sp--dg~~la~~~~~~~~~~i~v~d~~~g----~-~~~~~~~~~~~~~~~~s  242 (417)
T TIGR02800       170 YELQVADYDGANPQTITRSREPILSPAWSP--DGQKLAYVSFESGKPEIYVQDLATG----Q-REKVASFPGMNGAPAFS  242 (417)
T ss_pred             ceEEEEcCCCCCCEEeecCCCceecccCCC--CCCEEEEEEcCCCCcEEEEEECCCC----C-EEEeecCCCCccceEEC
Confidence            356677765443444445566799999999  99999887654   47999999862    2 23334455667789999


Q ss_pred             cCCCCEE-EEEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-CC--eEEEEECCCCccceeEec
Q 009380          292 QYCLSKI-FTSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-QG--GLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       292 ~~~~~~l-~s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg--~i~i~d~~~~~~~~~~~~  365 (536)
                      |++ +.| ++.+.++  .|.+||+.++....+..+........|+|++ ..|++.+. ++  .|+++|+.+++. ..+..
T Consensus       243 pDg-~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~  319 (417)
T TIGR02800       243 PDG-SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGEV-RRLTF  319 (417)
T ss_pred             CCC-CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCCE-EEeec
Confidence            998 655 4555544  5889999988776666665556678999998 56655443 33  688888877653 34444


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC---cEE
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIG  439 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~  439 (536)
                      +...+..+.|+|++ .+++.++.++   .|.+||+.++.     . .............|+|+|++|+..+.++   .+.
T Consensus       320 ~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~-----~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~  392 (417)
T TIGR02800       320 RGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG-----E-RVLTDTGLDESPSFAPNGRMILYATTRGGRGVLG  392 (417)
T ss_pred             CCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC-----e-EEccCCCCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence            56667788999988 5666666554   78899987642     1 1111122345678999999888877654   345


Q ss_pred             EEeC
Q 009380          440 IWSG  443 (536)
Q Consensus       440 iwd~  443 (536)
                      +++.
T Consensus       393 ~~~~  396 (417)
T TIGR02800       393 LVST  396 (417)
T ss_pred             EEEC
Confidence            5553

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.44  E-value=5.4e-12  Score=113.55  Aligned_cols=229  Identities=13%  Similarity=0.084  Sum_probs=159.9

Q ss_pred             ccccceEEecccccCcc-------ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC
Q 009380          211 IEVGSCVDIGSLTLKPE-------NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG  283 (536)
Q Consensus       211 ~~~dg~v~lw~~~~~~~-------~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~  283 (536)
                      ....|+|.++.......       ...+.....-.++.|++  .+.-++++..+|.+.+-+.....  -+.+..++.|.-
T Consensus        91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~--~~~~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~  166 (339)
T KOG0280|consen   91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST--SGTKIFVSDSRGSISGVYETEMV--LEKVQTWKVHEF  166 (339)
T ss_pred             ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec--cCceEEEEcCCCcEEEEecceee--eeecccccccce
Confidence            35556777776533221       11111122356788999  78889999999999955544321  234457899999


Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeE--EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-Ccc
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVF--DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKS  359 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~--~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~  359 (536)
                      .++...|+...++++++|+.|+.+..||++- +.+  .....|...|.+|.-+|..+.++++|+.|-.|++||.|+ +++
T Consensus       167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP  246 (339)
T KOG0280|consen  167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP  246 (339)
T ss_pred             eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence            9999999998889999999999999999993 322  234468899999999998889999999999999999994 566


Q ss_pred             ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEe-CCCc
Q 009380          360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTS-FDDT  437 (536)
Q Consensus       360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s-~dg~  437 (536)
                      +..-. -.+.|..+.++|.-.+.++.++.-.-.+|.+...........+.. ..|.+-+....|......|+||+ +|..
T Consensus       247 l~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~  325 (339)
T KOG0280|consen  247 LFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK  325 (339)
T ss_pred             cccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence            54443 458899999999654444555555557888887654221112222 25777777777765556788876 5666


Q ss_pred             EE-EEeCC
Q 009380          438 IG-IWSGV  444 (536)
Q Consensus       438 I~-iwd~~  444 (536)
                      |+ +|-.-
T Consensus       326 ~~~~Wl~~  333 (339)
T KOG0280|consen  326 IRQLWLHI  333 (339)
T ss_pred             eeeeeeec
Confidence            44 66443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.41  E-value=1.2e-11  Score=111.46  Aligned_cols=162  Identities=14%  Similarity=0.176  Sum_probs=115.5

Q ss_pred             eeecCCCCcccccccccccccccccccceEEecccccC--ccccccc-cCCceEEEEEEecCCccEEEE--EeCCCcEEE
Q 009380          188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK--PENIARI-MPGRITQMKFLPCSDVRMVVA--GSKLGNITF  262 (536)
Q Consensus       188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~--~~~~~~~-~~~~I~~v~~~p~~~~~~l~t--g~~dg~v~i  262 (536)
                      .+.+++.|..|+.........-....-|...||.+...  +...... ..+.|.+++|+|  +++.+|+  |..++.|.+
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP--~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP--NGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc--CCCEEEEEEccCCcccEE
Confidence            45688999988866553322222334456677766333  2333333 345799999999  8877644  456789999


Q ss_pred             EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCE
Q 009380          263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNT  339 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~  339 (536)
                      ||+.     ...+..+.  ...+..|.|+|+| ++|++++.+   |.|.+||+++.+......|. .++.++|+|+| ++
T Consensus        88 yd~~-----~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdG-r~  157 (194)
T PF08662_consen   88 YDVK-----GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDG-RY  157 (194)
T ss_pred             EcCc-----ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCC-CE
Confidence            9996     45666664  5678899999999 999988754   67999999988777666655 47899999999 77


Q ss_pred             EEEEEC------CCeEEEEECCCCcccee
Q 009380          340 LYFGEG------QGGLNIWDVRSRKSATE  362 (536)
Q Consensus       340 l~~g~~------dg~i~i~d~~~~~~~~~  362 (536)
                      |++++.      |..++||+.. |+.+..
T Consensus       158 ~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  158 LATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             EEEEEeccceeccccEEEEEec-CeEeEe
Confidence            777663      6789999974 555443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=8.6e-11  Score=120.71  Aligned_cols=212  Identities=16%  Similarity=0.081  Sum_probs=136.4

Q ss_pred             eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec
Q 009380          216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ  292 (536)
Q Consensus       216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~  292 (536)
                      .|.++|.+.........+...+....|+|  ||+.|+..+.+   ..|.+|++.++    . ...+....+.+....|+|
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSp--DG~~la~~s~~~~~~~l~~~~l~~g----~-~~~l~~~~g~~~~~~~Sp  252 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSP--DGKRIAYVSFEQKRPRIFVQNLDTG----R-REQITNFEGLNGAPAWSP  252 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECC--CCCEEEEEEcCCCCCEEEEEECCCC----C-EEEccCCCCCcCCeEECC
Confidence            46666665443333445677899999999  99988876543   36889999863    2 222333334456789999


Q ss_pred             CCCCEEE-EEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCC--eEEEEECCCCccceeEecc
Q 009380          293 YCLSKIF-TSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQG--GLNIWDVRSRKSATEWLLH  366 (536)
Q Consensus       293 ~~~~~l~-s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg--~i~i~d~~~~~~~~~~~~h  366 (536)
                      +| +.|+ +.+.+|  .|.+||+.++....+..+........|+|++ ..|+..+ .+|  .|+++|+.+++.. .+...
T Consensus       253 DG-~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg-~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~  329 (430)
T PRK00178        253 DG-SKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDG-RTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV  329 (430)
T ss_pred             CC-CEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCC-CEEEEEECCCCCceEEEEECCCCCEE-EeecC
Confidence            99 6655 555555  6888899988877666666667778999998 5554444 333  5777888777642 22222


Q ss_pred             CCCeEEEEEecCCCCEEEEEe-CCC--cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-C--cEEE
Q 009380          367 EARINTIDFNPRNPNIMATSS-TDG--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-D--TIGI  440 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s-~dg--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-g--~I~i  440 (536)
                      ........|+|++. .++..+ .++  .|.+||+.++.     . ....+........|+|+|+.|+..+.+ +  .|.+
T Consensus       330 ~~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~-----~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~  402 (430)
T PRK00178        330 GNYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGS-----V-RILTDTSLDESPSVAPNGTMLIYATRQQGRGVLML  402 (430)
T ss_pred             CCCccceEECCCCC-EEEEEEccCCceEEEEEECCCCC-----E-EEccCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            23344578999885 554444 333  47888988753     1 111122223356899999988877654 2  4667


Q ss_pred             EeCC
Q 009380          441 WSGV  444 (536)
Q Consensus       441 wd~~  444 (536)
                      +++.
T Consensus       403 ~~~~  406 (430)
T PRK00178        403 VSIN  406 (430)
T ss_pred             EECC
Confidence            7764

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.2e-10  Score=119.37  Aligned_cols=221  Identities=15%  Similarity=0.111  Sum_probs=135.0

Q ss_pred             eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC-C--cEEEEECCCCCCCCCceEEeccCCCCEEEEEEec
Q 009380          216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL-G--NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ  292 (536)
Q Consensus       216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d-g--~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~  292 (536)
                      .|.++|.+......+..+...+.+..|+|  ||+.|+..+.+ +  .|.+||+.++.  ...+..+   .+......|+|
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSP--DG~~La~~s~~~g~~~L~~~dl~tg~--~~~lt~~---~g~~~~~~wSP  271 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSP--DGRKLAYVSFENRKAEIFVQDIYTQV--REKVTSF---PGINGAPRFSP  271 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECC--CCCEEEEEEecCCCcEEEEEECCCCC--eEEecCC---CCCcCCeeECC
Confidence            55556654433334445577899999999  99988876543 3  58888887632  1122222   23345789999


Q ss_pred             CCCCEE-EEEECCCe--EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccC
Q 009380          293 YCLSKI-FTSCYDGL--IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHE  367 (536)
Q Consensus       293 ~~~~~l-~s~s~dg~--I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~  367 (536)
                      ++ +.| ++.+.+|.  |.++|+.++....+..+.......+|+|++..++++...+|  .|+++|+.+++.. .+....
T Consensus       272 DG-~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g  349 (448)
T PRK04792        272 DG-KKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEG  349 (448)
T ss_pred             CC-CEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCC
Confidence            99 655 45666775  78889988887776666666778899999844444443344  5777788776643 232222


Q ss_pred             CCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-Cc--EEEEe
Q 009380          368 ARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-DT--IGIWS  442 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-g~--I~iwd  442 (536)
                      ......+|+|+|..++++...++.  |.++|+.++.     ...+... .......|+|+|+.|+..+.+ +.  +.+++
T Consensus       350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-----~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~  423 (448)
T PRK04792        350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA-----MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVS  423 (448)
T ss_pred             CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC-----eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence            334457899998544444444454  5556776643     1111111 122345899999988776643 33  66777


Q ss_pred             CCCCCcceEE
Q 009380          443 GVNFENTSMI  452 (536)
Q Consensus       443 ~~~~~~~~~~  452 (536)
                      . ++.....+
T Consensus       424 ~-~G~~~~~l  432 (448)
T PRK04792        424 I-DGRFKARL  432 (448)
T ss_pred             C-CCCceEEC
Confidence            6 34444433

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=3.5e-10  Score=110.19  Aligned_cols=310  Identities=12%  Similarity=0.104  Sum_probs=196.5

Q ss_pred             eeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC----------
Q 009380          187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK----------  256 (536)
Q Consensus       187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~----------  256 (536)
                      ..+.+||.|.+|++.-..           .|.||--. .-..+.+...-.|.-+.|||  ..+||+|=+.          
T Consensus       214 tyv~wSP~GTYL~t~Hk~-----------GI~lWGG~-~f~r~~RF~Hp~Vq~idfSP--~EkYLVT~s~~p~~~~~~d~  279 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-----------GIALWGGE-SFDRIQRFYHPGVQFIDFSP--NEKYLVTYSPEPIIVEEDDN  279 (698)
T ss_pred             eeEEecCCceEEEEEecc-----------ceeeecCc-cHHHHHhccCCCceeeecCC--ccceEEEecCCccccCcccC
Confidence            467899999999987333           45555421 11222333344688899999  8899998542          


Q ss_pred             -CCcEEEEECCCCCCCCCceEEecc--CCCCE-EEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEE
Q 009380          257 -LGNITFWNLDSQQDEDNGIYLFRT--HLGPI-SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLS  331 (536)
Q Consensus       257 -dg~v~iwd~~~~~~~~~~~~~~~~--h~~~V-~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~  331 (536)
                       ...+.|||+.+    +.....|..  ....+ .-+.||.|+ .+++.-.. .+|.||+..+-.+..... .-..|....
T Consensus       280 e~~~l~IWDI~t----G~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~Fs  353 (698)
T KOG2314|consen  280 EGQQLIIWDIAT----GLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFS  353 (698)
T ss_pred             CCceEEEEEccc----cchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecccccCCccccCcc
Confidence             25799999998    555555544  22223 345799987 77777665 568999887632221111 236788899


Q ss_pred             ecCCCCCEEEEEEC-----CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe----------CCCcEEEEe
Q 009380          332 QQPNNVNTLYFGEG-----QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS----------TDGTACIWD  396 (536)
Q Consensus       332 ~~~~~~~~l~~g~~-----dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s----------~dg~i~iwd  396 (536)
                      |+|.+ ++|+--+.     -..+.+..+.+++.+++-..|.-.=..+.|...| .+|+.--          .=..+-|+.
T Consensus       354 wsP~~-~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfr  431 (698)
T KOG2314|consen  354 WSPTS-NLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFR  431 (698)
T ss_pred             cCCCc-ceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEE
Confidence            99997 77765432     1457777877777776665554444456676655 4554321          112466777


Q ss_pred             CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC---CCcEEEEeCCC-CCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVN-FENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~---dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                      ++..    ..++........|...+|-|.|+.+++.+.   ..++.+|-+.+ ......+.....    ..+..+.|+|.
T Consensus       432 ireK----dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPk  503 (698)
T KOG2314|consen  432 IREK----DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPK  503 (698)
T ss_pred             eecc----CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCC
Confidence            7763    356666678889999999999998887764   35688888763 222111111010    12233779999


Q ss_pred             CCEEEEE---cCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCe
Q 009380          473 DSCVFIG---NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ  529 (536)
Q Consensus       473 g~~l~~g---s~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~  529 (536)
                      |++++++   |..|.+.++|..-......-...|...  ..+.|.|+ |+++++++..++
T Consensus       504 G~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~a--t~veWDPt-GRYvvT~ss~wr  560 (698)
T KOG2314|consen  504 GRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAA--TEVEWDPT-GRYVVTSSSSWR  560 (698)
T ss_pred             CcEEEEEEecccccceEEEecchhhhhhccCcccccc--ccceECCC-CCEEEEeeehhh
Confidence            9998876   557889999988533322222223322  36789995 699999885443

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=3e-10  Score=110.99  Aligned_cols=236  Identities=16%  Similarity=0.163  Sum_probs=161.7

Q ss_pred             eeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEE-----EeCCCcEE
Q 009380          187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVA-----GSKLGNIT  261 (536)
Q Consensus       187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~t-----g~~dg~v~  261 (536)
                      ++.+|+.|+.+.|..           ..+.+.+|+.........+.|...|+.+.++|...-..||+     ++.-+.|+
T Consensus       129 W~~qfs~dEsl~arl-----------v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vr  197 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-----------VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVR  197 (566)
T ss_pred             cccccccchhhhhhh-----------hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEE
Confidence            689999999988866           33467778775544555678899999999999433455554     45567899


Q ss_pred             EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC--C---------CeEEEEECCCCeEEEeecCCCceeEE
Q 009380          262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY--D---------GLIRLMDAEKEVFDLVYSSEYAVFSL  330 (536)
Q Consensus       262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~--d---------g~I~vwd~~~~~~~~~~~~~~~i~~l  330 (536)
                      ||....... ...+..-.-....=..+.|++-|..+|+.++.  |         .+++++++++..........++|.++
T Consensus       198 i~~~~~~~~-~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv  276 (566)
T KOG2315|consen  198 IYKYPEEGQ-HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDV  276 (566)
T ss_pred             Eeccccccc-cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEE
Confidence            999873211 11111111112223357888877556655543  2         46888888866666666678999999


Q ss_pred             EecCCCCCEEEE-EECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC---CCcEEEEeCCCCCCCCCC
Q 009380          331 SQQPNNVNTLYF-GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST---DGTACIWDLRSMATDKPE  406 (536)
Q Consensus       331 ~~~~~~~~~l~~-g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~---dg~i~iwdl~~~~~~~~~  406 (536)
                      .|++++..+.++ |-.-..+.|||++ +.++..+  ..++-+++-|+|.| ++++.++.   -|.|-|||+.+.+    .
T Consensus       277 ~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K----~  348 (566)
T KOG2315|consen  277 TWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK----L  348 (566)
T ss_pred             EECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh----h
Confidence            999998444333 3345789999986 4444444  46777899999988 67766664   3889999998843    2


Q ss_pred             cceeecccCceeEEEEccCCCeEEEEeC------CCcEEEEeCC
Q 009380          407 PMKVLSHKRAVHSAYFSPSGSSLATTSF------DDTIGIWSGV  444 (536)
Q Consensus       407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s~------dg~I~iwd~~  444 (536)
                      +....  ....+-+.|+|||.+|+|++.      |+.++||+..
T Consensus       349 i~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  349 IAKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             ccccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            22222  223456799999999999875      6789999974

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=5.7e-10  Score=113.51  Aligned_cols=225  Identities=12%  Similarity=0.105  Sum_probs=136.7

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCC--EEEEEECC--CeEEEEECCCCeEEEeecCCCceeEEEec
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLS--KIFTSCYD--GLIRLMDAEKEVFDLVYSSEYAVFSLSQQ  333 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~--~l~s~s~d--g~I~vwd~~~~~~~~~~~~~~~i~~l~~~  333 (536)
                      ..|.+.|.+.     .....+......+..-.|+|||..  ++++...+  ..|.+.++.++....+....+......|+
T Consensus       165 ~~l~~~d~dG-----~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS  239 (428)
T PRK01029        165 GELWSVDYDG-----QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFS  239 (428)
T ss_pred             ceEEEEcCCC-----CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEEC
Confidence            3566667663     223334445556677899999833  22344434  35888899888777666666667788999


Q ss_pred             CCCCCEEEEEECCC----eEEEEECCCCc--cceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe--CCCCCCCC
Q 009380          334 PNNVNTLYFGEGQG----GLNIWDVRSRK--SATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWD--LRSMATDK  404 (536)
Q Consensus       334 ~~~~~~l~~g~~dg----~i~i~d~~~~~--~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd--l~~~~~~~  404 (536)
                      |+|..++++...+|    .+.+|++..+.  ....+. .+.......+|+|+|..++.+...+|...||.  +....   
T Consensus       240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---  316 (428)
T PRK01029        240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---  316 (428)
T ss_pred             CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---
Confidence            99944444443333    34446776531  222333 22334567899999854555555567655554  43211   


Q ss_pred             CCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                      .....+..+...+....|+|||+.|+..+.+   ..|.+||+.+++....... .  . .  ...+.|+|||++|+....
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~--~-~--~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-P--E-N--KESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-C--C-C--ccceEECCCCCEEEEEEC
Confidence            1222333444567789999999988877643   3699999987765432211 1  1 1  122779999998775432


Q ss_pred             ---CCcEEEEcCCccccc
Q 009380          482 ---TRTVEVISPAQRRSV  496 (536)
Q Consensus       482 ---dg~I~v~d~~~~~~~  496 (536)
                         ...|.++++.+++..
T Consensus       391 ~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        391 NSNESELYLISLITKKTR  408 (428)
T ss_pred             CCCCceEEEEECCCCCEE
Confidence               356888898877543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=4.9e-12  Score=122.56  Aligned_cols=284  Identities=15%  Similarity=0.184  Sum_probs=184.3

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..+|...|..++--.  +.+-++++++|.+|++|.+......   ..+..+++.|+.+|.++.|..+. .+++++  ||.
T Consensus       731 f~GH~~~iRai~Aid--NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~Sc--D~g  805 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAID--NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSIASC--DGG  805 (1034)
T ss_pred             ccCcHHHhHHHHhcc--cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ceeeec--cCc
Confidence            367888888887776  6678999999999999999864332   24778999999999999999886 677665  889


Q ss_pred             EEEEECCCCeEEEee---cCCCceeEEEecCC-CCCEEEEE-ECCCeEEEEECCCCccceeEe-----ccCCCeEEEEEe
Q 009380          307 IRLMDAEKEVFDLVY---SSEYAVFSLSQQPN-NVNTLYFG-EGQGGLNIWDVRSRKSATEWL-----LHEARINTIDFN  376 (536)
Q Consensus       307 I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~-~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~-----~h~~~i~~i~~~  376 (536)
                      |.+||.--+......   ...+.+..+...++ +..++++| +...+|+++|.+..+....++     +....+.+++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999997665443211   12233333333333 22345544 678899999999988877776     334568899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEE-EeCCCCCcceEEecc
Q 009380          377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI-WSGVNFENTSMIHHN  455 (536)
Q Consensus       377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~i-wd~~~~~~~~~~~~~  455 (536)
                      +.| +.++++-.+|+|.+.|.|+++    .+............++ .|..+.++....|.++.+ |-..++.........
T Consensus       886 ~~G-N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp  959 (1034)
T KOG4190|consen  886 DKG-NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP  959 (1034)
T ss_pred             cCc-chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence            977 789999999999999999975    1222222222222222 245566777778888888 876554333333222


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc----ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR----RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY  531 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~----~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~  531 (536)
                      ....+.+.       .-|..|++....+.+.||.-...    ..+.++....-..+.+.+..-|-+ .-+..|+..|.|.
T Consensus       960 pepahflq-------svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen  960 PEPAHFLQ-------SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIA 1031 (1034)
T ss_pred             Ccchhhhh-------ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc-chhhccCCCCcee
Confidence            22111111       13456677666667777743211    122334443334445677777866 5667788888887


Q ss_pred             E
Q 009380          532 V  532 (536)
Q Consensus       532 i  532 (536)
                      +
T Consensus      1032 L 1032 (1034)
T KOG4190|consen 1032 L 1032 (1034)
T ss_pred             e
Confidence            5

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.34  E-value=1.6e-10  Score=113.74  Aligned_cols=187  Identities=11%  Similarity=0.127  Sum_probs=148.3

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEecc---CCCCEEEEEEe------c-------------CCCCEEEEEECC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT---HLGPISGIVTQ------Q-------------YCLSKIFTSCYD  304 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~~------~-------------~~~~~l~s~s~d  304 (536)
                      ...++|..+.||.+++|+...+    .....|.+   -++..++..|.      |             .+...++-|...
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~----~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~   79 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKN----QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ   79 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCc----eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence            5679999999999999999873    33333322   23445555552      1             112567888889


Q ss_pred             CeEEEEECCCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          305 GLIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      |.|.+|++..+++...+   .|.+.|.++.++.+- .+|++++.|+.+..|+......++.+......+.+++.+||+ .
T Consensus        80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~-~  157 (541)
T KOG4547|consen   80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG-K  157 (541)
T ss_pred             ccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC-C
Confidence            99999999999876655   478899999998876 799999999999999999999999999999999999999997 6


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-----CCeEEEEe-CCCcEEEEeCCC
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-----GSSLATTS-FDDTIGIWSGVN  445 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-----g~~l~t~s-~dg~I~iwd~~~  445 (536)
                      ++++++  +.|++||+.+.+    .+..+.+|.++|+++.|--+     |.+++++. .+.-|.+|-+..
T Consensus       158 ~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            888887  689999999954    67777799999999999876     67776654 445577776543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.33  E-value=7e-11  Score=123.09  Aligned_cols=197  Identities=13%  Similarity=0.107  Sum_probs=153.8

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC-----EEEEEEecCCCCEEEEEECCCe
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP-----ISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ...+.|....+.-  +...++.++.++.+.+||...    ........ +...     ..-+.++++. -++++|+.-+.
T Consensus        85 ~~s~wi~g~~l~~--e~k~i~l~~~~ns~~i~d~~~----~~~~~~i~-~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~  156 (967)
T KOG0974|consen   85 RFSDWIFGAKLFE--ENKKIALVTSRNSLLIRDSKN----SSVLSKIQ-SDERCTLYSSLIIGDSAEE-LYIASGSVFGE  156 (967)
T ss_pred             hccccccccchhh--hcceEEEEEcCceEEEEeccc----CceehhcC-CCceEEEEeEEEEeccCcE-EEEEecccccc
Confidence            3466677666655  778899999999999999985    22222222 2221     1122344444 68899999999


Q ss_pred             EEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce-eEeccCCCeEEEEEecCCCCEEE
Q 009380          307 IRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT-EWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       307 I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      |.+|+... .....+.+|++.|.++.|+.++ .++++.+.|.++++|++.+.+... +..+|...|..++|+|.   .++
T Consensus       157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~  232 (967)
T KOG0974|consen  157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RII  232 (967)
T ss_pred             EEEEeccccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeE
Confidence            99999873 3344578999999999999998 899999999999999999988765 66689999999999983   899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecc-cCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSH-KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~-~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      |++.|-+.++|+....     ....+.+| ...|+.++..++...++|++.|+.+++||+..
T Consensus       233 t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  233 TVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9999999999976652     22234455 46799999999999999999999999999864

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.31  E-value=1.8e-11  Score=122.62  Aligned_cols=293  Identities=16%  Similarity=0.185  Sum_probs=194.8

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccc--cC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT--LK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~--~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      .++..+.++|.|+.++..          ..- .+.+-|++  .. +.-+....+-.|-.+.|+|.....+-++......-
T Consensus        25 ~~~~a~si~p~grdi~lA----------sr~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qka   93 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLA----------SRQ-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKA   93 (1081)
T ss_pred             Ccccceeeccccchhhhh----------hhc-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchh
Confidence            466777888888877733          111 23333332  22 33333444667889999986666777777777788


Q ss_pred             EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE--EeecCCCceeEEEecCCCCC
Q 009380          261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD--LVYSSEYAVFSLSQQPNNVN  338 (536)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~~~~~i~~l~~~~~~~~  338 (536)
                      .+|++..... ...-..+.+|+..|+.+.|+|+.+..+++++.|-.+..||+++...-  ....-......+.|+..+++
T Consensus        94 iiwnlA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~  172 (1081)
T KOG0309|consen   94 IIWNLAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN  172 (1081)
T ss_pred             hhhhhhcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence            8999975432 45556778999999999999999999999999999999999875432  22234566788999988877


Q ss_pred             EEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCce
Q 009380          339 TLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV  417 (536)
Q Consensus       339 ~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v  417 (536)
                      .+++.. ...|.+||++.|. ++..+++|...|+.+.|+..-...+.+++.||+|+.||..+..   ...........+|
T Consensus       173 vlassh-g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt---~e~~~~vtt~~pi  248 (1081)
T KOG0309|consen  173 VLASSH-GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST---TESKRTVTTNFPI  248 (1081)
T ss_pred             hhhhcc-CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc---cccceeccccCcc
Confidence            666544 4589999999764 5788889999999999987554578999999999999988743   2333344566788


Q ss_pred             eEEEEccCCCeEEE--EeCCCcEEEEeCCCC----------CcceEEe-ccCCCCceeee--eEEEEcCC--CCEEEEEc
Q 009380          418 HSAYFSPSGSSLAT--TSFDDTIGIWSGVNF----------ENTSMIH-HNNQTGRWISS--FRAIWGWD--DSCVFIGN  480 (536)
Q Consensus       418 ~~l~~sp~g~~l~t--~s~dg~I~iwd~~~~----------~~~~~~~-~~~~~~~~~~~--~~~~~s~~--g~~l~~gs  480 (536)
                      +...|-|-|.-.++  .-.+..+.+++.++.          .+++.+. |.......+..  -.+.+..+  .-.|++-+
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS  328 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS  328 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence            88888885542222  222334444443322          3344442 22211100000  00111222  22489999


Q ss_pred             CCCcEEEEcCCc
Q 009380          481 MTRTVEVISPAQ  492 (536)
Q Consensus       481 ~dg~I~v~d~~~  492 (536)
                      .|..+++|.+.+
T Consensus       329 kD~~lrlWpI~~  340 (1081)
T KOG0309|consen  329 KDQTLRLWPIDS  340 (1081)
T ss_pred             cCCceEeeeccH
Confidence            999999998865

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=1.9e-11  Score=132.95  Aligned_cols=223  Identities=12%  Similarity=0.213  Sum_probs=172.3

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK  358 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~  358 (536)
                      |-..|.++.-+|.. .+.+||+.||.|++|....+.....+.  ....|+.+.|+.+| +.+.++..||.+.+|... .+
T Consensus      2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred             ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccC-Cc
Confidence            34567788888887 899999999999999988776554442  34789999999998 888999999999999987 77


Q ss_pred             cceeEeccCCCeEEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC
Q 009380          359 SATEWLLHEARINTIDFNPRNPNIMATSS---TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD  435 (536)
Q Consensus       359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d  435 (536)
                      +...++.|......+.|..   ..+++++   .++.+.+||.-...  ....+. ..|...++++++-|..++|++|+.+
T Consensus      2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~--~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPP--MNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCc--ccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence            7888889999999999985   4677765   46899999976532  112222 6899999999999999999999999


Q ss_pred             CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeee-----eee
Q 009380          436 DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAI-----PCR  510 (536)
Q Consensus       436 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~-----~~~  510 (536)
                      |.|++||++..+..+.+..              +. ...+|++|+..|.|+||++.....+.++...|...-     ...
T Consensus      2358 G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q 2422 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQ 2422 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCce
Confidence            9999999987666655522              23 456899999999999999999988888887552211     011


Q ss_pred             EeecCCCCCEEEEEccCCe
Q 009380          511 FHAHPHQVGTLAGATGGGQ  529 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg~  529 (536)
                      +...+  .+.|.+|+.||.
T Consensus      2423 ~~v~~--~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2423 INVGQ--CNRIFSCGADGT 2439 (2439)
T ss_pred             eeecc--CceEEEecCCCC
Confidence            11222  356777777763

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=8.8e-10  Score=112.15  Aligned_cols=224  Identities=11%  Similarity=0.046  Sum_probs=131.5

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccE---EEEEeCCC--cEEEEECCCCCCCCCceEEeccCCCCEEEEE
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRM---VVAGSKLG--NITFWNLDSQQDEDNGIYLFRTHLGPISGIV  289 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~---l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  289 (536)
                      +.|.+.|.+......+......+.+-+|+|  ||+.   +++...+|  .|.+.++..+.  ...+..+   .+......
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSP--DG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~---~g~~~~p~  237 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMH--IGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILAL---QGNQLMPT  237 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEcc--CCCceEEEEEEccCCCceEEEEECCCCC--ceEeecC---CCCccceE
Confidence            345555543332222333455678889999  8864   23444444  57777777532  2333333   34455689


Q ss_pred             EecCCCCEEEEEEC-CC----eEEEEECCC---CeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEE--ECCC-C
Q 009380          290 TQQYCLSKIFTSCY-DG----LIRLMDAEK---EVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIW--DVRS-R  357 (536)
Q Consensus       290 ~~~~~~~~l~s~s~-dg----~I~vwd~~~---~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~--d~~~-~  357 (536)
                      |+||| +.|+..+. +|    .+..|++..   +....+.... ......+|+|+|..++++...+|...+|  ++.. +
T Consensus       238 wSPDG-~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g  316 (428)
T PRK01029        238 FSPRK-KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG  316 (428)
T ss_pred             ECCCC-CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc
Confidence            99999 66665542 23    344577764   2333444332 3456789999994344444456654444  5432 2


Q ss_pred             ccceeEeccCCCeEEEEEecCCCCEEEEEeCC--CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC-
Q 009380          358 KSATEWLLHEARINTIDFNPRNPNIMATSSTD--GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF-  434 (536)
Q Consensus       358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d--g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~-  434 (536)
                      .....+..+...+....|+|+|..+++++..+  ..|.+||+.+++     ...+......+....|+|||+.|+.... 
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-----~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-----DYQLTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-----eEEccCCCCCccceEECCCCCEEEEEECC
Confidence            33444544556678899999985444444333  368999998763     2222223345678999999998875543 


Q ss_pred             --CCcEEEEeCCCCCcceE
Q 009380          435 --DDTIGIWSGVNFENTSM  451 (536)
Q Consensus       435 --dg~I~iwd~~~~~~~~~  451 (536)
                        ...|.+||+.+++....
T Consensus       392 ~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        392 SNESELYLISLITKKTRKI  410 (428)
T ss_pred             CCCceEEEEECCCCCEEEe
Confidence              34688889877654433

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=9.7e-09  Score=95.96  Aligned_cols=276  Identities=13%  Similarity=0.118  Sum_probs=179.6

Q ss_pred             cccccceEEecccccCcccc----ccccCCceEEEEEEecCCccEEEEEeC---CCcEEEEECCCCCCCCCceEEeccCC
Q 009380          210 KIEVGSCVDIGSLTLKPENI----ARIMPGRITQMKFLPCSDVRMVVAGSK---LGNITFWNLDSQQDEDNGIYLFRTHL  282 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~----~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg~v~iwd~~~~~~~~~~~~~~~~h~  282 (536)
                      +.+.+..|..|++......+    .-...+..+-|+|+|  +++.|.++-.   +|.|..|.++........+.....-.
T Consensus        11 T~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~--~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g   88 (346)
T COG2706          11 TKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP--DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPG   88 (346)
T ss_pred             cccCCCceEEEEEeCcccccchhhhccccCCCceEEECC--CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCC
Confidence            34446689999986332221    223478899999999  8888888755   47888888875311111222222223


Q ss_pred             CCEEEEEEecCCCCEEEEEEC-CCeEEEEECCC-CeE---EEeecCCCc----------eeEEEecCCCCCEEEEEEC-C
Q 009380          283 GPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEK-EVF---DLVYSSEYA----------VFSLSQQPNNVNTLYFGEG-Q  346 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~-~~~---~~~~~~~~~----------i~~l~~~~~~~~~l~~g~~-d  346 (536)
                      .+-+.+++++++ .+|+++.+ .|.|.++-++. |.+   .....|.+.          +-+..+.|++ ++|++... -
T Consensus        89 ~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~  166 (346)
T COG2706          89 SPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGT  166 (346)
T ss_pred             CCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCC
Confidence            344889999999 89998877 58899999865 433   233344444          7888999998 67777653 2


Q ss_pred             CeEEEEECCCCccceeEe---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc--cee----ecccCce
Q 009380          347 GGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP--MKV----LSHKRAV  417 (536)
Q Consensus       347 g~i~i~d~~~~~~~~~~~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~--~~~----~~~~~~v  417 (536)
                      -.|.+|++..++....-.   .....-+.|.|||++....+.+-.+++|-+|...........+  +..    +.-..+.
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~  246 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA  246 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence            389999999776522111   3445678899999886555556678999999988742111111  111    1235577


Q ss_pred             eEEEEccCCCeEEEEeC-CCcEEEEeCCCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-CcEEEEcCC
Q 009380          418 HSAYFSPSGSSLATTSF-DDTIGIWSGVNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-RTVEVISPA  491 (536)
Q Consensus       418 ~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I~v~d~~  491 (536)
                      ..|..+|+|++|.++.. .+.|.+|.+.... .+..+......+.+-..  ..+++.|++|++++.+ ..|.+|.+.
T Consensus       247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~--F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRD--FNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCcc--ceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            88999999999988763 4478888876543 23333333333333333  4578999999998876 458888654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.30  E-value=9e-09  Score=96.19  Aligned_cols=272  Identities=13%  Similarity=0.219  Sum_probs=175.6

Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCC--CeEEEeec---CCCcee
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEK--EVFDLVYS---SEYAVF  328 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~--~~~~~~~~---~~~~i~  328 (536)
                      +..|++|++++.... ........+.+..+-|+|+|+. +.|+++-.+   |.|..|.++.  |.+..+-.   ...+.+
T Consensus        15 s~gI~v~~ld~~~g~-l~~~~~v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGE-LSLLQLVAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccc-cchhhhccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence            467999999864321 2222334566788999999998 888888654   7777777764  65544332   234458


Q ss_pred             EEEecCCCCCEEEEEE-CCCeEEEEECCC-Cccc--eeEeccCCC----------eEEEEEecCCCCEEEEEeC-CCcEE
Q 009380          329 SLSQQPNNVNTLYFGE-GQGGLNIWDVRS-RKSA--TEWLLHEAR----------INTIDFNPRNPNIMATSST-DGTAC  393 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~~~--~~~~~h~~~----------i~~i~~~p~~~~~l~s~s~-dg~i~  393 (536)
                      .+++++++ .+++++. ..|.|.++-++. |...  .....|.+.          +....+.|++ ++|++.+. --.|.
T Consensus        93 yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~  170 (346)
T COG2706          93 YVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIF  170 (346)
T ss_pred             EEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEE
Confidence            89999998 6777765 458999999976 4332  122235555          8889999988 67777653 24699


Q ss_pred             EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCC-CcceEE------eccCCCCceeeee
Q 009380          394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNF-ENTSMI------HHNNQTGRWISSF  465 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~-~~~~~~------~~~~~~~~~~~~~  465 (536)
                      +|++..+.........+ .-...-..|.|+|++++..+.+ .+++|.+|..... .....+      +..-....+... 
T Consensus       171 ~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aa-  248 (346)
T COG2706         171 LYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAA-  248 (346)
T ss_pred             EEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeE-
Confidence            99999765322222222 5566788999999999888776 5899999998763 222222      111122223333 


Q ss_pred             EEEEcCCCCEEEEEcCC-CcEEEEcCCccc-cceeccC-CceeeeeeeEeecCCCCCEEEEEccC-CeEEEEecC
Q 009380          466 RAIWGWDDSCVFIGNMT-RTVEVISPAQRR-SVATLQS-PYISAIPCRFHAHPHQVGTLAGATGG-GQVYVWTSD  536 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~d-g~I~v~d~~~~~-~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~D-g~v~iW~~d  536 (536)
                       +..++||++|++++.- ..|-+|.+.... .+..+.. ......+-.|.+.|. +++|++++.+ ..|.+|.+|
T Consensus       249 -Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         249 -IHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS-GRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             -EEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEc
Confidence             5679999999998653 467888765431 2222221 122233457888884 5777777644 468888764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.29  E-value=4.9e-09  Score=105.82  Aligned_cols=256  Identities=14%  Similarity=0.099  Sum_probs=159.8

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA  326 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~  326 (536)
                      ++..+++++.+|.|..+|..+    ++.+...... +.+.+.-.. .+ ..++.++.+|.|..||.++++....+....+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~t----G~~~W~~~~~-~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~  176 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAED----GKELWRAKLS-SEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTP  176 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCC----CcEeeeeccC-ceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCC
Confidence            556788888999999999987    4444443322 222221111 23 5778888899999999999887655543332


Q ss_pred             eeE------EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC----C------e-EEEEEecCCCCEEEEEeCC
Q 009380          327 VFS------LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA----R------I-NTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       327 i~~------l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~----~------i-~~i~~~p~~~~~l~s~s~d  389 (536)
                      ...      ....  + ..++++..+|.+..+|.++|+.+........    .      + .+..+.  + ..+++++.+
T Consensus       177 ~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~--~-~~vy~~~~~  250 (377)
T TIGR03300       177 ALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD--G-GQVYAVSYQ  250 (377)
T ss_pred             ceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE--C-CEEEEEEcC
Confidence            211      1111  2 3678888899999999999987654321100    0      1 111122  3 467777889


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      |.++.||..+++    ..... ... ......  ..+..+++++.||.|..+|..+++.+......  .......  +. 
T Consensus       251 g~l~a~d~~tG~----~~W~~-~~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~--~~~~~ss--p~-  317 (377)
T TIGR03300       251 GRVAALDLRSGR----VLWKR-DAS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL--KYRQLTA--PA-  317 (377)
T ss_pred             CEEEEEECCCCc----EEEee-ccC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc--cCCcccc--CE-
Confidence            999999998864    11111 111 111122  24667888889999999999888766544211  1111111  11 


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                       ..+..|++++.+|.|+++|..+++.+.++..+..... ..-...  + +.|+.++.||.|+.|
T Consensus       318 -i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~-~sp~~~--~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       318 -VVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIA-SPPVVV--G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             -EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccc-cCCEEE--C-CEEEEEeCCceEEEe
Confidence             1356899999999999999999999988875432221 111221  3 578899999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.27  E-value=1.5e-08  Score=98.45  Aligned_cols=255  Identities=11%  Similarity=0.111  Sum_probs=155.4

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----------CCeEEEEECCCCeEEEeecCC---
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----------DGLIRLMDAEKEVFDLVYSSE---  324 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----------dg~I~vwd~~~~~~~~~~~~~---  324 (536)
                      ++|.+.|..+    .+.+..+..-..+- .+ ++|++ +.|+.+..          +..|.+||+.+.+........   
T Consensus        27 ~~v~ViD~~~----~~v~g~i~~G~~P~-~~-~spDg-~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p   99 (352)
T TIGR02658        27 TQVYTIDGEA----GRVLGMTDGGFLPN-PV-VASDG-SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP   99 (352)
T ss_pred             ceEEEEECCC----CEEEEEEEccCCCc-ee-ECCCC-CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence            7899999987    56666665443333 24 99999 66665554          789999999998776544432   


Q ss_pred             -----CceeEEEecCCCCCEEEEEE-C-CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380          325 -----YAVFSLSQQPNNVNTLYFGE-G-QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       325 -----~~i~~l~~~~~~~~~l~~g~-~-dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                           .....++++|+| ++|++.. . +..|.++|+.+++.+.++.... ...-+..++.. ++  +-+.||......+
T Consensus       100 ~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~--~~~~Dg~~~~v~~  174 (352)
T TIGR02658       100 RFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF--MHCRDGSLAKVGY  174 (352)
T ss_pred             hhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE--EEeecCceEEEEe
Confidence                 233478999999 7777665 3 6899999999999888876422 22222222211 11  2223444444333


Q ss_pred             CCCCCCCCCcceeecc------cCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC-----cceEEeccC-----CCCc
Q 009380          398 RSMATDKPEPMKVLSH------KRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFE-----NTSMIHHNN-----QTGR  460 (536)
Q Consensus       398 ~~~~~~~~~~~~~~~~------~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~-----~~~~~~~~~-----~~~~  460 (536)
                      ............++..      ..+    .|.+ +|+++.+... |+|.+.|+....     ....+....     ..+.
T Consensus       175 d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g  249 (352)
T TIGR02658       175 GTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG  249 (352)
T ss_pred             cCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence            3211000000011100      112    4566 8887777666 999999964432     222221110     1111


Q ss_pred             eeeeeEEEEcCCCCEEEEEc----------CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEEEEc-cCC
Q 009380          461 WISSFRAIWGWDDSCVFIGN----------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGAT-GGG  528 (536)
Q Consensus       461 ~~~~~~~~~s~~g~~l~~gs----------~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~lasgs-~Dg  528 (536)
                      + ..  ++++++++.+++..          ..+.|.++|..+++.+..+...+.   +..+.++| |+. +|++.+ .++
T Consensus       250 ~-q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~---~~~iavS~-Dgkp~lyvtn~~s~  322 (352)
T TIGR02658       250 W-QQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE---IDSINVSQ-DAKPLLYALSTGDK  322 (352)
T ss_pred             c-ee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc---eeeEEECC-CCCeEEEEeCCCCC
Confidence            1 11  66899999888743          124799999999999998875432   24678888 456 777666 688


Q ss_pred             eEEEEecC
Q 009380          529 QVYVWTSD  536 (536)
Q Consensus       529 ~v~iW~~d  536 (536)
                      .|.|.|++
T Consensus       323 ~VsViD~~  330 (352)
T TIGR02658       323 TLYIFDAE  330 (352)
T ss_pred             cEEEEECc
Confidence            89999863

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.27  E-value=5e-09  Score=117.26  Aligned_cols=250  Identities=11%  Similarity=0.104  Sum_probs=163.2

Q ss_pred             EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc--------------CCCCEEEEEEecCCCCEEEEEE-
Q 009380          238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--------------HLGPISGIVTQQYCLSKIFTSC-  302 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--------------h~~~V~~l~~~~~~~~~l~s~s-  302 (536)
                      ..+++++. ++.++++-+.++.|.+||...     ..+..+.+              +-.....|++.+++ +.|+.+. 
T Consensus       571 ~gvavd~~-~g~lyVaDs~n~rI~v~d~~G-----~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-n~LYVaDt  643 (1057)
T PLN02919        571 GKLAIDLL-NNRLFISDSNHNRIVVTDLDG-----NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-NLLYVADT  643 (1057)
T ss_pred             ceEEEECC-CCeEEEEECCCCeEEEEeCCC-----CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-CEEEEEeC
Confidence            35788763 466777778888999999863     22322221              11235789999987 6666554 


Q ss_pred             CCCeEEEEECCCCeEEEeecC-----------------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380          303 YDGLIRLMDAEKEVFDLVYSS-----------------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       303 ~dg~I~vwd~~~~~~~~~~~~-----------------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                      ..+.|+++|+.++....+.+.                 -.....++++|++..++++...++.|++||..++... .+.+
T Consensus       644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G  722 (1057)
T PLN02919        644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSG  722 (1057)
T ss_pred             CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEec
Confidence            457899999988766544321                 0134679999965466677778889999998776432 2211


Q ss_pred             ---------------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC---------CCcceeec--------c
Q 009380          366 ---------------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK---------PEPMKVLS--------H  413 (536)
Q Consensus       366 ---------------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~---------~~~~~~~~--------~  413 (536)
                                     .-.....|+++|++..++++-+.++.|++||+.++....         .....+-.        .
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence                           112356799999886577777778999999998643100         00000000        1


Q ss_pred             cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC---C-----CCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN---Q-----TGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      -.....++++++|+++++-+.++.|++||..++..........   .     ....-....++++++|+.+++-+.++.|
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I  882 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI  882 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence            1134689999999988888899999999998765543332110   0     0001112236788999988888899999


Q ss_pred             EEEcCCcccc
Q 009380          486 EVISPAQRRS  495 (536)
Q Consensus       486 ~v~d~~~~~~  495 (536)
                      ++||+.+++.
T Consensus       883 rvid~~~~~~  892 (1057)
T PLN02919        883 RYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCcc
Confidence            9999988754

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.26  E-value=3.8e-09  Score=106.61  Aligned_cols=265  Identities=10%  Similarity=0.047  Sum_probs=164.8

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA  326 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~  326 (536)
                      .+..+++++.+|.|..+|..+    ++.+..+............  ++ ..++.++.+|.+..+|..+++..........
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  136 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAET----GKRLWRVDLDERLSGGVGA--DG-GLVFVGTEKGEVIALDAEDGKELWRAKLSSE  136 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccC----CcEeeeecCCCCcccceEE--cC-CEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence            456888888899999999887    4555444433322222222  34 7888899999999999999987765554444


Q ss_pred             eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-----EEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380          327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-----NTIDFNPRNPNIMATSSTDGTACIWDLRSMA  401 (536)
Q Consensus       327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-----~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~  401 (536)
                      +.+.-... + ..+++++.+|.|..||..+++.+..+......+     .+....  + ..++.+..+|.+..+|+++++
T Consensus       137 ~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~  211 (377)
T TIGR03300       137 VLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQ  211 (377)
T ss_pred             eecCCEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCC
Confidence            43222222 2 478888889999999999998877665332211     111222  2 357778888999999998875


Q ss_pred             CCCCCcceee-ccc--CceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE
Q 009380          402 TDKPEPMKVL-SHK--RAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV  476 (536)
Q Consensus       402 ~~~~~~~~~~-~~~--~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  476 (536)
                      .......... +..  .....+.-+|  .+..+++++.+|.+..||..+++.........    ...   +  ...+..|
T Consensus       212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~---p--~~~~~~v  282 (377)
T TIGR03300       212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQG---P--AVDDNRL  282 (377)
T ss_pred             EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccC---c--eEeCCEE
Confidence            2111000000 000  0000111112  35578888899999999999887665543211    111   1  1245688


Q ss_pred             EEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          477 FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++++.+|.|..+|..+++.+........... .....   .+..|++++.+|.|++||.+
T Consensus       283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~-ssp~i---~g~~l~~~~~~G~l~~~d~~  338 (377)
T TIGR03300       283 YVTDADGVVVALDRRSGSELWKNDELKYRQL-TAPAV---VGGYLVVGDFEGYLHWLSRE  338 (377)
T ss_pred             EEECCCCeEEEEECCCCcEEEccccccCCcc-ccCEE---ECCEEEEEeCCCEEEEEECC
Confidence            8888999999999999987766532111111 11111   24789999999999999863

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=4.5e-10  Score=117.20  Aligned_cols=196  Identities=15%  Similarity=0.135  Sum_probs=144.9

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee-----EEEecCCCCCEEEEEECCCeEEEEECCCCc
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-----SLSQQPNNVNTLYFGEGQGGLNIWDVRSRK  358 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-----~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~  358 (536)
                      .|....+.-.. ..++.++.+..+.+||...+....-..+...++     -+.++++. -++++|+.-+.|.+|+..-.+
T Consensus        89 wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   89 WIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEeccccC
Confidence            34444455555 788888889999999998776554444433221     12234443 678889999999999988444


Q ss_pred             cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380          359 SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                      .-..+.+|.+.|.++.|+-+| .++++.|.|+++++|++.+.+.   .....++|...|+.+.|.|+  .++|++.|-+.
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~---~~~~~fgHsaRvw~~~~~~n--~i~t~gedctc  240 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREV---LGCTGFGHSARVWACCFLPN--RIITVGEDCTC  240 (967)
T ss_pred             CcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccc---cCcccccccceeEEEEeccc--eeEEeccceEE
Confidence            334678999999999999988 7999999999999999998642   22466799999999999998  89999999999


Q ss_pred             EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      ++|+.... .+..+...  .+..+.  +++..++...+++++.|+.+++|+..+
T Consensus       241 rvW~~~~~-~l~~y~~h--~g~~iw--~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  241 RVWGVNGT-QLEVYDEH--SGKGIW--KIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEecccc-eehhhhhh--hhccee--EEEEcCCceEEEeeccCcchhhhhhhc
Confidence            99976433 33333221  222222  255677778899999999999999854

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.25  E-value=1.3e-10  Score=116.59  Aligned_cols=284  Identities=16%  Similarity=0.194  Sum_probs=186.3

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC--CEEEEEEecCC--CCEEEEEECCCeEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG--PISGIVTQQYC--LSKIFTSCYDGLIR  308 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~--~V~~l~~~~~~--~~~l~s~s~dg~I~  308 (536)
                      ..+.+..+..+|  .|+-++.++.-| +.+-|++...   ... .+..|..  .|-.+.|+|..  +..+++.+ ...-.
T Consensus        23 v~~~~~a~si~p--~grdi~lAsr~g-l~i~dld~p~---~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkai   94 (1081)
T KOG0309|consen   23 VDGGFNAVSINP--SGRDIVLASRQG-LYIIDLDDPF---TPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAI   94 (1081)
T ss_pred             ecCcccceeecc--ccchhhhhhhcC-eEEEeccCCC---CCc-eeeeccCcchhcceecccCCCCceeEEecC-cchhh
Confidence            467888999999  888888888765 5667877642   222 2222332  36677887753  13344444 34455


Q ss_pred             EEECCCC----eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEE
Q 009380          309 LMDAEKE----VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIM  383 (536)
Q Consensus       309 vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l  383 (536)
                      +|++...    .-..+.+|...|+.+-|+|..+..+++++.|-.+..||+++... +..+..-...-..|+|+-.+++.+
T Consensus        95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl  174 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL  174 (1081)
T ss_pred             hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh
Confidence            8987643    22234578899999999999999999999999999999998654 566555555667899998887777


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccCCCCc
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENT--SMIHHNNQTGR  460 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~  460 (536)
                      |+. ....|.+||++.+.   .......+|...|+.+.|.. ....+.+++.|++|+.||.......  ..+..+    .
T Consensus       175 ass-hg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~----~  246 (1081)
T KOG0309|consen  175 ASS-HGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN----F  246 (1081)
T ss_pred             hhc-cCCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc----C
Confidence            665 45679999999975   34455567999999999987 3456889999999999998643222  222111    1


Q ss_pred             eeeeeEEEEcCCCC--EEEEEcCCCcEEEEcCC----------ccccceeccCCceeeeeeeEeecCC---------CCC
Q 009380          461 WISSFRAIWGWDDS--CVFIGNMTRTVEVISPA----------QRRSVATLQSPYISAIPCRFHAHPH---------QVG  519 (536)
Q Consensus       461 ~~~~~~~~~s~~g~--~l~~gs~dg~I~v~d~~----------~~~~~~~l~~~~~~~~~~~~~~~p~---------~~~  519 (536)
                      .  +.+..+-|-|.  ++.---.+..+.+++.+          ..+.+++|.+|...++  .|.|-..         +.-
T Consensus       247 p--iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~--eFlWR~r~e~~~d~d~rdf  322 (1081)
T KOG0309|consen  247 P--IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL--EFLWRKRKECDGDYDSRDF  322 (1081)
T ss_pred             c--ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHH--HHhhhhcccccCCCCccce
Confidence            1  11233334332  22222222244444432          2346778887655443  3333211         124


Q ss_pred             EEEEEccCCeEEEEecC
Q 009380          520 TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       520 ~lasgs~Dg~v~iW~~d  536 (536)
                      +|+|-+.|..|++|-++
T Consensus       323 QLVTWSkD~~lrlWpI~  339 (1081)
T KOG0309|consen  323 QLVTWSKDQTLRLWPID  339 (1081)
T ss_pred             eEEEeecCCceEeeecc
Confidence            79999999999999874

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.25  E-value=3.6e-11  Score=130.88  Aligned_cols=197  Identities=15%  Similarity=0.235  Sum_probs=152.7

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      -..|.++.-||  ...+.+||+.||.|++|....    +..+..+.. -...|+.+.|+.+| +.+..+..||.+.+|.+
T Consensus      2208 v~~v~r~~sHp--~~~~Yltgs~dgsv~~~~w~~----~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2208 VENVRRMTSHP--SDPYYLTGSQDGSVRMFEWGH----GQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             cCceeeecCCC--CCceEEecCCCceEEEEeccC----CCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeeccc
Confidence            45677777888  778999999999999999987    445554432 23779999999999 99999999999999999


Q ss_pred             CCCeEEEeecCCCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          313 EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       313 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      ....+.....|+.....+.|-.   ..+++++   .++.+.+||..-... ...-..|.+.++++++.|.. ++|++|+.
T Consensus      2281 ~pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr 2356 (2439)
T KOG1064|consen 2281 SPKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGR 2356 (2439)
T ss_pred             CCcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCC
Confidence            8666666667888888888875   3566654   568999999764322 12226899999999999966 79999999


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN  455 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  455 (536)
                      +|.|++||++..+     ..    |.-+.    ++ ...+|++++..|.|+||++.....+..+.+.
T Consensus      2357 ~G~v~l~D~rqrq-----l~----h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQ-----LR----HTFQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             cCcEEEeehHHHH-----HH----HHhhh----hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence            9999999998732     22    22222    44 5678999999999999999988777776543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.24  E-value=3.1e-09  Score=94.76  Aligned_cols=259  Identities=15%  Similarity=0.110  Sum_probs=164.3

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEec---CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEe
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPC---SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQ  291 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~---~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~  291 (536)
                      ..+.+|++...+..+...-    ..+.|.|.   ....+||.|+..|...+|...+.   .........|...|+-+.=.
T Consensus        52 ~sv~i~~~y~N~~~iv~~y----~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn---~~h~~~cd~snn~v~~~~r~  124 (344)
T KOG4532|consen   52 ISVPINSHYSNPKGIVEFY----TGMTFTPGSFINKCVTLADGGASGQFDLFACNTN---DGHLYQCDVSNNDVTLVKRY  124 (344)
T ss_pred             eeeEeccccCCchhhEEee----ecccccchHhhccccEEEeccccceeeeecccCc---ccceeeecccccchhhhhhh
Confidence            3678888766664333322    45566652   23468999999999999999864   23333444444433322222


Q ss_pred             cCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-c-ce-eEeccC
Q 009380          292 QYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-S-AT-EWLLHE  367 (536)
Q Consensus       292 ~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~-~~-~~~~h~  367 (536)
                      .+...-+..++.|.++++.+++.+....... ..-.+.++.+++++ .++++.+....|..|.+.... . +. ......
T Consensus       125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~  203 (344)
T KOG4532|consen  125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS  203 (344)
T ss_pred             cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence            2222457778889999999887654332222 12348899999998 788888888899999887532 2 23 222445


Q ss_pred             CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCC--eEEEEeCCCcEEEEeCC
Q 009380          368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGS--SLATTSFDDTIGIWSGV  444 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~--~l~t~s~dg~I~iwd~~  444 (536)
                      +.-.+..|+..+ ..||++..||++.|||+|........ ......|.+.+..+.|++-|.  +|+..-.=+.+.+-|++
T Consensus       204 D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  204 DHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             CCceeeeeccCc-ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            566788999866 68999999999999999986421111 112225899999999998553  44444455779999999


Q ss_pred             CCCcceEEeccCCCC---ceeeeeEEEEcCCCCEEEEEcCC
Q 009380          445 NFENTSMIHHNNQTG---RWISSFRAIWGWDDSCVFIGNMT  482 (536)
Q Consensus       445 ~~~~~~~~~~~~~~~---~~~~~~~~~~s~~g~~l~~gs~d  482 (536)
                      ++.....+.......   ....++...|+.++..+.+.+.+
T Consensus       283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~  323 (344)
T KOG4532|consen  283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL  323 (344)
T ss_pred             cCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence            988776664222110   00112334566666655555543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.23  E-value=3.1e-08  Score=96.17  Aligned_cols=267  Identities=8%  Similarity=-0.005  Sum_probs=160.7

Q ss_pred             cceEEecccccCccccccccCC-ceEEEEEEecCCccEEEEEeC----------CCcEEEEECCCCCCCCCceEEeccC-
Q 009380          214 GSCVDIGSLTLKPENIARIMPG-RITQMKFLPCSDVRMVVAGSK----------LGNITFWNLDSQQDEDNGIYLFRTH-  281 (536)
Q Consensus       214 dg~v~lw~~~~~~~~~~~~~~~-~I~~v~~~p~~~~~~l~tg~~----------dg~v~iwd~~~~~~~~~~~~~~~~h-  281 (536)
                      .|.|.+.|....... ...-.+ .-..+ ++|  |++.|.++..          +..|.+||+.+    ...+..+..- 
T Consensus        26 ~~~v~ViD~~~~~v~-g~i~~G~~P~~~-~sp--Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t----~~~~~~i~~p~   97 (352)
T TIGR02658        26 TTQVYTIDGEAGRVL-GMTDGGFLPNPV-VAS--DGSFFAHASTVYSRIARGKRTDYVEVIDPQT----HLPIADIELPE   97 (352)
T ss_pred             CceEEEEECCCCEEE-EEEEccCCCcee-ECC--CCCEEEEEeccccccccCCCCCEEEEEECcc----CcEEeEEccCC
Confidence            367788876443211 111111 11224 999  8887776654          78999999998    5555555421 


Q ss_pred             ------CCCEEEEEEecCCCCEEEEEE-C-CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380          282 ------LGPISGIVTQQYCLSKIFTSC-Y-DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD  353 (536)
Q Consensus       282 ------~~~V~~l~~~~~~~~~l~s~s-~-dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d  353 (536)
                            ...-..++++|+| ++|+... . +..|.+.|+.+++............-+..+.+.   ..+-+.||......
T Consensus        98 ~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~---~~~~~~Dg~~~~v~  173 (352)
T TIGR02658        98 GPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT---FFMHCRDGSLAKVG  173 (352)
T ss_pred             CchhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc---cEEEeecCceEEEE
Confidence                  2233478999999 8888765 3 799999999999877665544433333333322   22334555555444


Q ss_pred             CCC-Cccc-eeEe-ccC--CCeE-EEEEec-CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCcee
Q 009380          354 VRS-RKSA-TEWL-LHE--ARIN-TIDFNP-RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVH  418 (536)
Q Consensus       354 ~~~-~~~~-~~~~-~h~--~~i~-~i~~~p-~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~  418 (536)
                      +.+ ++.. .... -+.  ..+. .-.|.+ ++ .++..... |+|.+.|+...............        ....+.
T Consensus       174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q  251 (352)
T TIGR02658       174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ  251 (352)
T ss_pred             ecCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence            332 2211 1100 011  0000 003455 55 45555554 99999997654322222222211        234455


Q ss_pred             EEEEccCCCeEEEEe----------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEE
Q 009380          419 SAYFSPSGSSLATTS----------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVE  486 (536)
Q Consensus       419 ~l~~sp~g~~l~t~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~  486 (536)
                      -++++|+++.+++..          ..+.|.++|..+++.+..+..    +.....  +++++|++ +|++.+ .++.|.
T Consensus       252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~--iavS~Dgkp~lyvtn~~s~~Vs  325 (352)
T TIGR02658       252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDS--INVSQDAKPLLYALSTGDKTLY  325 (352)
T ss_pred             eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceee--EEECCCCCeEEEEeCCCCCcEE
Confidence            599999998888743          124799999999988888743    222333  67899999 888777 468899


Q ss_pred             EEcCCccccceecc
Q 009380          487 VISPAQRRSVATLQ  500 (536)
Q Consensus       487 v~d~~~~~~~~~l~  500 (536)
                      ++|..+++.+.++.
T Consensus       326 ViD~~t~k~i~~i~  339 (352)
T TIGR02658       326 IFDAETGKELSSVN  339 (352)
T ss_pred             EEECcCCeEEeeec
Confidence            99999999988873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=1.5e-09  Score=108.62  Aligned_cols=282  Identities=13%  Similarity=0.129  Sum_probs=185.8

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC-----------CceEEeccCCCCEEEEEEecCCCCEEEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED-----------NGIYLFRTHLGPISGIVTQQYCLSKIFTSC  302 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~-----------~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s  302 (536)
                      .....|+.|+.  +..+||+|+.||.++|..+.+.....           ....++.+|.+.|.-+.|+... +.|-|..
T Consensus        14 nvkL~c~~WNk--e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSD   90 (1189)
T KOG2041|consen   14 NVKLHCAEWNK--ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSD   90 (1189)
T ss_pred             CceEEEEEEcc--cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccC
Confidence            34578999999  88999999999999999987643211           1234678999999999999987 8999999


Q ss_pred             CCCeEEEEECCCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380          303 YDGLIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       303 ~dg~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~  379 (536)
                      .+|.|.||-+-++....-.   ...+.|.+++|+.+| ..++....||.|.+=.+...+. .--.........+.|++|.
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDL  168 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeecccee-cchhcchheccceeecccH
Confidence            9999999999887653222   345789999999998 7888888999888766654322 1111112234478999987


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCC--Cc-cee----ecccCceeEEEEc--------cCCCeEEEEeCCCcEEEEeCC
Q 009380          380 PNIMATSSTDGTACIWDLRSMATDKP--EP-MKV----LSHKRAVHSAYFS--------PSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~~~--~~-~~~----~~~~~~v~~l~~s--------p~g~~l~t~s~dg~I~iwd~~  444 (536)
                       ..++.+-.+|.+.+||....-....  .+ +..    ......|..+.|.        |+...|+++-..|.+.|-.-.
T Consensus       169 -~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e  247 (1189)
T KOG2041|consen  169 -EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE  247 (1189)
T ss_pred             -HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence             4566666789999999764210000  00 111    1122235566664        366789999999988887655


Q ss_pred             CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---------CcEEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380          445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---------g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      +-.....+    .++  ...+.+.|+++|..|++++.+         +.|.+|..- |..+.+++.+...+  +.++|-.
T Consensus       248 ND~~Pvv~----dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~I--t~lsWEg  318 (1189)
T KOG2041|consen  248 NDPEPVVV----DTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCI--TGLSWEG  318 (1189)
T ss_pred             CCCCCeEE----ecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCcee--eeeEEcC
Confidence            44444343    222  233447899999999998764         356666543 44666666544333  3566753


Q ss_pred             CCCCEEEEEccCCeEEE
Q 009380          516 HQVGTLAGATGGGQVYV  532 (536)
Q Consensus       516 ~~~~~lasgs~Dg~v~i  532 (536)
                       . .+=+.-..|+.|++
T Consensus       319 -~-gLriA~Avdsfiyf  333 (1189)
T KOG2041|consen  319 -T-GLRIAIAVDSFIYF  333 (1189)
T ss_pred             -C-ceEEEEEecceEEE
Confidence             1 22223334555554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.22  E-value=3.8e-09  Score=95.82  Aligned_cols=242  Identities=13%  Similarity=0.162  Sum_probs=143.1

Q ss_pred             eecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC
Q 009380          189 CKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ  268 (536)
Q Consensus       189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~  268 (536)
                      +..+.+|++||...+.-+.+.+...|     |..-.....+.+--.-.=..++|+|  |+.+||.+...|+|++||+.. 
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Dd-----f~si~~kcqVpkD~~PQWRkl~WSp--D~tlLa~a~S~G~i~vfdl~g-   74 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDD-----FSSIIGKCQVPKDPNPQWRKLAWSP--DCTLLAYAESTGTIRVFDLMG-   74 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCC-----chheeEEEecCCCCCchheEEEECC--CCcEEEEEcCCCeEEEEeccc-
Confidence            34678999999886666665433222     1111111122222233456799999  999999999999999999984 


Q ss_pred             CCCCCceEEecc-------CCCCEEEEEEecCC-----CCEEEEEECCCeEEEEECCCC---eEEE--e----ecCCCce
Q 009380          269 QDEDNGIYLFRT-------HLGPISGIVTQQYC-----LSKIFTSCYDGLIRLMDAEKE---VFDL--V----YSSEYAV  327 (536)
Q Consensus       269 ~~~~~~~~~~~~-------h~~~V~~l~~~~~~-----~~~l~s~s~dg~I~vwd~~~~---~~~~--~----~~~~~~i  327 (536)
                          ..+..+.+       -...|..+.|.+..     ...|+.-.++|.++-|-+..+   ....  .    ......|
T Consensus        75 ----~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi  150 (282)
T PF15492_consen   75 ----SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGI  150 (282)
T ss_pred             ----ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCce
Confidence                23333222       23567777776542     246888889998888876321   2111  1    1246789


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC-CCc------EEEEeCCCC
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST-DGT------ACIWDLRSM  400 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~-dg~------i~iwdl~~~  400 (536)
                      .++.|+|.. ++|++|+....      ..+    ........+++-....+.+++..+.+. |+.      ..+|.+-+.
T Consensus       151 ~~~vy~p~h-~LLlVgG~~~~------~~~----~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~  219 (282)
T PF15492_consen  151 NSAVYHPKH-RLLLVGGCEQN------QDG----MSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF  219 (282)
T ss_pred             eEEEEcCCC-CEEEEeccCCC------CCc----cccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce
Confidence            999999997 78887765422      000    011122233333333333333322222 221      123332221


Q ss_pred             CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ  457 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~  457 (536)
                      .    ...........|..+..||||..|++.+.+|.|.+|++.+...........+
T Consensus       220 ~----~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq  272 (282)
T PF15492_consen  220 K----FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ  272 (282)
T ss_pred             e----eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence            0    0011123467899999999999999999999999999988776666544333

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.21  E-value=7.6e-10  Score=100.52  Aligned_cols=252  Identities=19%  Similarity=0.268  Sum_probs=170.5

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCC------------CCEEEEEEecC-CCCEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHL------------GPISGIVTQQY-CLSKIF  299 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~------------~~V~~l~~~~~-~~~~l~  299 (536)
                      .+.|++|.|..  .|.||++|.+.|.|.+|.-..... +.+....|++|.            ..|..|.|..+ +...++
T Consensus        26 ad~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          26 ADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            45699999998  899999999999999998764321 123344566664            34778888655 345688


Q ss_pred             EEECCCeEEEEECCCCeE------------------------------------------EEee--cCCCceeEEEecCC
Q 009380          300 TSCYDGLIRLMDAEKEVF------------------------------------------DLVY--SSEYAVFSLSQQPN  335 (536)
Q Consensus       300 s~s~dg~I~vwd~~~~~~------------------------------------------~~~~--~~~~~i~~l~~~~~  335 (536)
                      ..+.|.+|++|.+....+                                          ..++  .|..-|.++.|+.+
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD  183 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD  183 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence            888999999998753210                                          0111  35556788999887


Q ss_pred             CCCEEEEEECCCeEEEEECCCCcc---ceeEeccC-----CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-CC-C
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHE-----ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-DK-P  405 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~-----~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-~~-~  405 (536)
                      . ..++ ...|-.|.+|++.-...   +..++.|.     .-|++..|+|...++|.-.+..|.|++-|+|...- .. .
T Consensus       184 ~-et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~  261 (460)
T COG5170         184 K-ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK  261 (460)
T ss_pred             h-heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence            6 3444 45566899998875433   22223332     45889999998878888888899999999995320 00 0


Q ss_pred             Ccc----------eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC-CcceEEeccC----------CCCceeee
Q 009380          406 EPM----------KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF-ENTSMIHHNN----------QTGRWISS  464 (536)
Q Consensus       406 ~~~----------~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~-~~~~~~~~~~----------~~~~~~~~  464 (536)
                      ...          .+.+-...|..+.|+++|++|++-+. -+|+|||++.. .++.++....          .......-
T Consensus       262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence            000          01123467889999999999987664 57999999854 4555553211          11223344


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      +.+.||.|.+.+++|+..+..-+|-.
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEEEecCCcccccccccccceeeecc
Confidence            67889999999999988877777753

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.20  E-value=5.8e-10  Score=98.94  Aligned_cols=200  Identities=15%  Similarity=0.197  Sum_probs=124.3

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCC--------CCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDS--------QQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~--------~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      |+.+.++.   ...|+++..++.+..+....        ..........+..|+++-.+-+.+-.+ +-++++..||.+.
T Consensus        39 ~~~~~~v~---~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-t~V~~~~~dg~~~  114 (319)
T KOG4714|consen   39 LSKVSLSA---EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-NRVCIGYADGSLA  114 (319)
T ss_pred             EEEeechh---hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-CceEecCCCceEE
Confidence            55555553   34566665555544433221        111123445555666554444444445 7899999999999


Q ss_pred             EEECCCCeEEEe---ecCCCceeEEEecCCCCCEEEEEE-----CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCC
Q 009380          309 LMDAEKEVFDLV---YSSEYAVFSLSQQPNNVNTLYFGE-----GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNP  380 (536)
Q Consensus       309 vwd~~~~~~~~~---~~~~~~i~~l~~~~~~~~~l~~g~-----~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~  380 (536)
                      +++.+.- +...   ......-.+.++...+ +.+.++.     .-+..+.|+++..+.+..-......|.+++-+|...
T Consensus       115 v~s~~~~-~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq  192 (319)
T KOG4714|consen  115 VFSTDKD-LALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ  192 (319)
T ss_pred             EEechHH-Hhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccc
Confidence            9998761 1110   0011111222333333 3443322     123566777664433222222334599999999888


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      +++++|+.||.+.+||.|+..   .....+..|+..|+.+-|+| ++..|++++.||.+.-||..+
T Consensus       193 ~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  193 HLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             cEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            899999999999999999863   12333447999999999999 788999999999999999754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=1.6e-08  Score=113.29  Aligned_cols=247  Identities=11%  Similarity=0.061  Sum_probs=156.3

Q ss_pred             EEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-C-------------CCceeEEEecCCCCCEEEEEE-CCCeEE
Q 009380          286 SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-S-------------EYAVFSLSQQPNNVNTLYFGE-GQGGLN  350 (536)
Q Consensus       286 ~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~-------------~~~i~~l~~~~~~~~~l~~g~-~dg~i~  350 (536)
                      ..+++++.+..++++-+.++.|++||........+-. .             -.....+++.+++ +.|+++. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g-n~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK-NLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC-CEEEEEeCCCceEE
Confidence            4678887653677777788999999987654333222 0             0135788999887 5565554 567899


Q ss_pred             EEECCCCccceeEecc-----------------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----CCcce
Q 009380          351 IWDVRSRKSATEWLLH-----------------EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----PEPMK  409 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h-----------------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----~~~~~  409 (536)
                      ++|+.++. +.++.+.                 -..-..|+|+|++..++++.+.++.|++||..++....    .....
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~  728 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN  728 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence            99987654 3333210                 11345799999665788888888999999987642100    00000


Q ss_pred             ee------cccCceeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCcceEEec-----------cCCCC-----ceeeeeE
Q 009380          410 VL------SHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTSMIHH-----------NNQTG-----RWISSFR  466 (536)
Q Consensus       410 ~~------~~~~~v~~l~~sp~g~~l-~t~s~dg~I~iwd~~~~~~~~~~~~-----------~~~~~-----~~~~~~~  466 (536)
                      ..      ..-...+.++|+|+|..| ++-+.++.|++||+.++........           ....+     .......
T Consensus       729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G  808 (1057)
T PLN02919        729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG  808 (1057)
T ss_pred             CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence            00      011345679999998844 4555678999999987543211100           00000     0112234


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc------------eeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY------------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~------------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      ++++++|..+++-+.++.|++||..++.... +.+..            .-..+..+++++ ++.++++-+.++.|++||
T Consensus       809 vavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            6789999988888899999999998875432 22110            001234567777 568899999999999999


Q ss_pred             cC
Q 009380          535 SD  536 (536)
Q Consensus       535 ~d  536 (536)
                      ++
T Consensus       887 ~~  888 (1057)
T PLN02919        887 LN  888 (1057)
T ss_pred             CC
Confidence            74

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=5.9e-09  Score=102.86  Aligned_cols=181  Identities=15%  Similarity=0.251  Sum_probs=141.0

Q ss_pred             cccceEEecccccCcccccc----ccCCceEEEEEE------e------------cCCccEEEEEeCCCcEEEEECCCCC
Q 009380          212 EVGSCVDIGSLTLKPENIAR----IMPGRITQMKFL------P------------CSDVRMVVAGSKLGNITFWNLDSQQ  269 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~~~~~~----~~~~~I~~v~~~------p------------~~~~~~l~tg~~dg~v~iwd~~~~~  269 (536)
                      ..||.+++|+...+......    ...+..++..|.      |            ..+...++-|...|.|.+|++..  
T Consensus        12 ~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~--   89 (541)
T KOG4547|consen   12 TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAG--   89 (541)
T ss_pred             CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecC--
Confidence            56789999997554332211    114444555553      2            12456788899999999999986  


Q ss_pred             CCCCceEEe--ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECC
Q 009380          270 DEDNGIYLF--RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQ  346 (536)
Q Consensus       270 ~~~~~~~~~--~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~d  346 (536)
                        ++....+  ..|.+.|.++.++.+- ..|++++.|+.+..|+...+....... ....+.+++.+|++ .++++++  
T Consensus        90 --g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~-~~l~~as--  163 (541)
T KOG4547|consen   90 --GEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG-KILLTAS--  163 (541)
T ss_pred             --CeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCC-CEEEecc--
Confidence              4444444  4699999999999887 899999999999999999987776664 46788999999997 7887776  


Q ss_pred             CeEEEEECCCCccceeEeccCCCeEEEEEecC-----CCCEEEEEeCCCcEEEEeCCCC
Q 009380          347 GGLNIWDVRSRKSATEWLLHEARINTIDFNPR-----NPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       347 g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~-----~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      ++|.+||+++++.+.+|.+|.++|+++.|.-.     |.++|.+...+..+.+|-+...
T Consensus       164 ~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~  222 (541)
T KOG4547|consen  164 RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE  222 (541)
T ss_pred             ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence            48999999999999999999999999999876     5566666667778889987763

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.14  E-value=6.6e-08  Score=106.44  Aligned_cols=285  Identities=14%  Similarity=0.113  Sum_probs=181.6

Q ss_pred             CceEEEEEEecCCccEEEEEeCCC--cEEEEECCCCCCCCCceEEec-----cCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLG--NITFWNLDSQQDEDNGIYLFR-----THLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      ..+...+|.+..+.-+++++....  .|.+....... ....+..+.     ...+.|.++.|.++. ..++.+..+|.|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~-~~~~l~s~~~~~~~~~~~~ivs~~yl~d~-~~l~~~~~~Gdi   99 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDG-SVEVLASWDAPLPDDPNDKIVSFQYLADS-ESLCIALASGDI   99 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCC-ceeEEEeccccCCcCCCCcEEEEEeccCC-CcEEEEECCceE
Confidence            457778888743444444444333  23333333211 012233332     335679999999998 889999999999


Q ss_pred             EEE----ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC---------------C--------Cccc
Q 009380          308 RLM----DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR---------------S--------RKSA  360 (536)
Q Consensus       308 ~vw----d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~---------------~--------~~~~  360 (536)
                      .+.    +........+-..+..|.+++|+||+ .+|+..+.+|+|.+.+-.               .        |+.-
T Consensus       100 ~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe  178 (928)
T PF04762_consen  100 ILVREDPDPDEDEIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE  178 (928)
T ss_pred             EEEEccCCCCCceeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence            999    77777777777778999999999998 799999999888776421               0        0000


Q ss_pred             eeEec------------------------cCCCeEEEEEecCCCCEEEEEeC---C---CcEEEEeCCCCCCCCCCccee
Q 009380          361 TEWLL------------------------HEARINTIDFNPRNPNIMATSST---D---GTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       361 ~~~~~------------------------h~~~i~~i~~~p~~~~~l~s~s~---d---g~i~iwdl~~~~~~~~~~~~~  410 (536)
                      ..|.|                        +.+.-..|+|-.|| .+||+.+.   .   +.|+||+-. |.     ....
T Consensus       179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re-G~-----L~st  251 (928)
T PF04762_consen  179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE-GE-----LQST  251 (928)
T ss_pred             CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC-ce-----EEec
Confidence            11110                        22345678999988 68887764   2   579999955 31     2221


Q ss_pred             e-cccCceeEEEEccCCCeEEEEeC---CCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          411 L-SHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       411 ~-~~~~~v~~l~~sp~g~~l~t~s~---dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      . .-.+--.+++|.|.|++||+...   ...|.+|.- +|-....+.... ...  ..+..+.|++|+..|++.-.|. |
T Consensus       252 SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~--~~v~~l~Wn~ds~iLAv~~~~~-v  327 (928)
T PF04762_consen  252 SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEE--EKVIELAWNSDSEILAVWLEDR-V  327 (928)
T ss_pred             cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCC--ceeeEEEECCCCCEEEEEecCC-c
Confidence            1 22333457899999999988764   344777763 444333343221 122  2335588999999999987665 9


Q ss_pred             EEEcCCcccc--ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          486 EVISPAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       486 ~v~d~~~~~~--~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .+|-..+..-  -+.+........ ..+.|||.+...|...+.+|.+..++
T Consensus       328 qLWt~~NYHWYLKqei~~~~~~~~-~~~~Wdpe~p~~L~v~t~~g~~~~~~  377 (928)
T PF04762_consen  328 QLWTRSNYHWYLKQEIRFSSSESV-NFVKWDPEKPLRLHVLTSNGQYEIYD  377 (928)
T ss_pred             eEEEeeCCEEEEEEEEEccCCCCC-CceEECCCCCCEEEEEecCCcEEEEE
Confidence            9998876531  122222222222 23899998888898888888887665

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.13  E-value=1.1e-09  Score=97.18  Aligned_cols=205  Identities=16%  Similarity=0.159  Sum_probs=125.2

Q ss_pred             eeecCCCCcccccccccccccccccccceEEecccc--cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380          188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLT--LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL  265 (536)
Q Consensus       188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~--~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~  265 (536)
                      .+.++.+-.++.......+-.+.....-.+.+|+-.  .++..+...|.+.-.+-+.+-  .++-++++..||.+.+++.
T Consensus        41 ~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~--~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   41 KVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM--TDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             EeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc--cCCceEecCCCceEEEEec
Confidence            333444444444444444444444444455566532  233333344444333333443  5678999999999999998


Q ss_pred             CCCCCCCCceEEe-ccCCCCEEEEEEecCCCCEEEEEEC-----CCeEEEEECCCCeE-EEeecCCCceeEEEecCCCCC
Q 009380          266 DSQQDEDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCY-----DGLIRLMDAEKEVF-DLVYSSEYAVFSLSQQPNNVN  338 (536)
Q Consensus       266 ~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~-----dg~I~vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~  338 (536)
                      +..   ....... ..|.+.. +.++...+ +.+.++.-     -+..+.|+++..+. .........|.+++-+|...+
T Consensus       119 ~~~---~~~~~~i~~~~~~~a-s~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~  193 (319)
T KOG4714|consen  119 DKD---LALMSRIPSIHSGSA-SRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH  193 (319)
T ss_pred             hHH---Hhhhhhccccccccc-ccceeecc-cEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence            751   1111111 1122221 22222333 34443321     23345566553322 111222345999999999888


Q ss_pred             EEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          339 TLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       339 ~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      ++++|+.||.+.+||.+.... +..+..|...|..|.|||.++..|+++++||.+--||..+
T Consensus       194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999999999999999998754 5566789999999999999999999999999999999765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.5e-07  Score=95.27  Aligned_cols=195  Identities=10%  Similarity=-0.002  Sum_probs=125.1

Q ss_pred             CEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCc
Q 009380          284 PISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRK  358 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~  358 (536)
                      .+..-.|+|++...++..+.+   ..|.++|+.++....+....+......|+|++..++++.+.+  ..|.++|+.++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            778899999993335544443   569999999998877776667677889999995555555444  568888987775


Q ss_pred             cceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-
Q 009380          359 SATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-  435 (536)
Q Consensus       359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-  435 (536)
                      . ..+..+........|+|||..++++....+  .|+++|+.+++.   ..+...+.    ....|+|+|++|+..+.. 
T Consensus       269 ~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---~rlt~~g~----~~~~~SPDG~~Ia~~~~~~  340 (419)
T PRK04043        269 L-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---EQVVFHGK----NNSSVSTYKNYIVYSSRET  340 (419)
T ss_pred             E-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---EeCccCCC----cCceECCCCCEEEEEEcCC
Confidence            3 344434333345689999966666654444  577778876531   11111111    124899999988877654 


Q ss_pred             --------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCcc
Q 009380          436 --------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQR  493 (536)
Q Consensus       436 --------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~  493 (536)
                              ..|.+.|+.++... .+...   +.   ...+.|+|||+.|+..+..   ..+.++++...
T Consensus       341 ~~~~~~~~~~I~v~d~~~g~~~-~LT~~---~~---~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        341 NNEFGKNTFNLYLISTNSDYIR-RLTAN---GV---NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CcccCCCCcEEEEEECCCCCeE-ECCCC---CC---cCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence                    26888888776532 22211   11   1127799999987765543   23566666554

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=2.3e-09  Score=102.12  Aligned_cols=262  Identities=15%  Similarity=0.101  Sum_probs=182.9

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CCeEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRL  309 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~v  309 (536)
                      ..|.+.|+.+....   .+++.+++.||.++.|.-..... -..+..+..|.+.|.+++.+-++ .++.|.+. |..+++
T Consensus         6 ymhrd~i~hv~~tk---a~fiiqASlDGh~KFWkKs~isG-vEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~Kv   80 (558)
T KOG0882|consen    6 YMHRDVITHVFPTK---AKFIIQASLDGHKKFWKKSRISG-VEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKV   80 (558)
T ss_pred             hcccceeeeEeeeh---hheEEeeecchhhhhcCCCCccc-eeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeE
Confidence            45788888887764   57999999999999998764111 34566778899999999999998 88888777 999999


Q ss_pred             EECCCCeEEEeecCCCceeEEEec--CCCC-CEEEEE-ECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEE
Q 009380          310 MDAEKEVFDLVYSSEYAVFSLSQQ--PNNV-NTLYFG-EGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIM  383 (536)
Q Consensus       310 wd~~~~~~~~~~~~~~~i~~l~~~--~~~~-~~l~~g-~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l  383 (536)
                      +|+++-............-.++|.  +.+. ..++++ -.+|.+.++|-....+  ...-..|..+|.++.++|.+ ..+
T Consensus        81 fDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~  159 (558)
T KOG0882|consen   81 FDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSA  159 (558)
T ss_pred             EEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cce
Confidence            999876544333322222223332  2211 134443 3578999999876543  33344799999999999977 688


Q ss_pred             EEEeCCCcEEEEeCCC-CCCC----------CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          384 ATSSTDGTACIWDLRS-MATD----------KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~-~~~~----------~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      ++....|.|.-|.... .+..          ......+........++.|+|+|..+.+-+.|..|++++..+++..+.+
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            8888899999998773 1100          0111222234667889999999999999999999999999887766554


Q ss_pred             eccCC-----C-----------------------CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceec
Q 009380          453 HHNNQ-----T-----------------------GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       453 ~~~~~-----~-----------------------~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l  499 (536)
                      .....     .                       ........++|...|++|+-|+.=| |+|+++.++++...+
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL  313 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence            21100     0                       0011122467899999999998765 888888887665443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=7.2e-08  Score=94.42  Aligned_cols=292  Identities=14%  Similarity=0.121  Sum_probs=177.1

Q ss_pred             EEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC
Q 009380          217 VDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL  295 (536)
Q Consensus       217 v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  295 (536)
                      ...|+...+ +..+..--.-.=+-+.|||  -|.||++--..| |.+|--.+    ...+..|. |. .|.-+.|||.. 
T Consensus       192 svfwN~~~n~p~~ie~RenWTetyv~wSP--~GTYL~t~Hk~G-I~lWGG~~----f~r~~RF~-Hp-~Vq~idfSP~E-  261 (698)
T KOG2314|consen  192 SVFWNSKFNEPSLIEERENWTETYVRWSP--KGTYLVTFHKQG-IALWGGES----FDRIQRFY-HP-GVQFIDFSPNE-  261 (698)
T ss_pred             EEEccccCCchhhhhhhhcceeeeEEecC--CceEEEEEeccc-eeeecCcc----HHHHHhcc-CC-CceeeecCCcc-
Confidence            355665442 2222222233457799999  999999988765 88997665    44555543 54 48889999998 


Q ss_pred             CEEEEEEC-----------CCeEEEEECCCCeEEEeecC---CCcee-EEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380          296 SKIFTSCY-----------DGLIRLMDAEKEVFDLVYSS---EYAVF-SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA  360 (536)
Q Consensus       296 ~~l~s~s~-----------dg~I~vwd~~~~~~~~~~~~---~~~i~-~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~  360 (536)
                      ++|+|-+.           ...++|||+.+|.....+..   ...++ -+.|+.++ .+++--..+ .|.||+..+..++
T Consensus       262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~~-sisIyEtpsf~ll  339 (698)
T KOG2314|consen  262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTGN-SISIYETPSFMLL  339 (698)
T ss_pred             ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEeccc-eEEEEecCceeee
Confidence            99998764           25799999999977665543   23333 35789888 677766665 8999997764443


Q ss_pred             eeEeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC-
Q 009380          361 TEWLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF-  434 (536)
Q Consensus       361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~-  434 (536)
                      ..-...-..|....|+|.+ ++||-=...     ..+.+-.+.+..    .+....-|.-.=..+.|-.+|.+|+.--. 
T Consensus       340 d~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~----~iRt~nlfnVsDckLhWQk~gdyLcvkvdR  414 (698)
T KOG2314|consen  340 DKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKR----EIRTKNLFNVSDCKLHWQKSGDYLCVKVDR  414 (698)
T ss_pred             cccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccc----eeeeccceeeeccEEEeccCCcEEEEEEEe
Confidence            3323345678899999965 566543321     234444444321    11111112222234667778888775321 


Q ss_pred             ---------CCcEEEEeCCCCCcc-eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCcc----ccce
Q 009380          435 ---------DDTIGIWSGVNFENT-SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQR----RSVA  497 (536)
Q Consensus       435 ---------dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~----~~~~  497 (536)
                               =..+.|+.++..... ..+...      -..+..+|.|.|..+++-+.+   .++.+|.+.+.    +.+.
T Consensus       415 ~tK~~~~g~f~n~eIfrireKdIpve~velk------e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk  488 (698)
T KOG2314|consen  415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELK------ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK  488 (698)
T ss_pred             eccccccceEeeEEEEEeeccCCCceeeecc------hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence                     112555555443222 111111      134557899999886654433   57899988732    2334


Q ss_pred             eccCCceeeeeeeEeecCCCCCEEEEE---ccCCeEEEEecC
Q 009380          498 TLQSPYISAIPCRFHAHPHQVGTLAGA---TGGGQVYVWTSD  536 (536)
Q Consensus       498 ~l~~~~~~~~~~~~~~~p~~~~~lasg---s~Dg~v~iW~~d  536 (536)
                      .+..    ..+..+.|+| .|++++.+   |..|.+.++|.+
T Consensus       489 ~~dk----~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  489 ELDK----KFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             hhcc----cccceEEEcC-CCcEEEEEEecccccceEEEecc
Confidence            4432    3344678999 57887765   457889998864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.07  E-value=1.8e-07  Score=90.90  Aligned_cols=295  Identities=11%  Similarity=0.063  Sum_probs=184.1

Q ss_pred             ecccccceeeeecCCCCccccccccccc-----ccccccccceEEecccccCcccc-ccccCCc--eE-EEEEEecCCcc
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVV-----KTEKIEVGSCVDIGSLTLKPENI-ARIMPGR--IT-QMKFLPCSDVR  249 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~-----~~~~~~~dg~v~lw~~~~~~~~~-~~~~~~~--I~-~v~~~p~~~~~  249 (536)
                      ..--...|..+.|+|.+++|..-....+     ++.--..++.+.+||........ ..+...+  .+ -+.|+-  +..
T Consensus        67 ~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~--~D~  144 (561)
T COG5354          67 VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI--DDK  144 (561)
T ss_pred             eeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee--cch
Confidence            3444577889999999999986544444     22222344478999975443221 1122222  44 677887  666


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEE-----EECCCeEEEEECCCCeEEEeec-
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFT-----SCYDGLIRLMDAEKEVFDLVYS-  322 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s-----~s~dg~I~vwd~~~~~~~~~~~-  322 (536)
                      ++|-- ....+.|+++.. .-.......++  ...|....|+|.+. ..|+.     ...++.+++|.+..+....... 
T Consensus       145 y~ARv-v~~sl~i~e~t~-n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l  220 (561)
T COG5354         145 YVARV-VGSSLYIHEITD-NIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL  220 (561)
T ss_pred             hhhhh-ccCeEEEEecCC-ccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee
Confidence            66544 234799999732 21122222222  35688888998741 23332     3567889999988654433221 


Q ss_pred             CCCceeEEEecCCCCCEEEE-EE----------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE-eCCC
Q 009380          323 SEYAVFSLSQQPNNVNTLYF-GE----------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS-STDG  390 (536)
Q Consensus       323 ~~~~i~~l~~~~~~~~~l~~-g~----------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~-s~dg  390 (536)
                      ....=..+.|++.| ++|++ .-          ...++++++++...+ .......++|..++|.|.+..+.+.. -.+-
T Consensus       221 fk~~~~qLkW~~~g-~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa  298 (561)
T COG5354         221 FKVSGVQLKWQVLG-KYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPA  298 (561)
T ss_pred             EeecccEEEEecCC-ceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEeccccc
Confidence            12233467788877 44433 11          124688999874433 33325689999999999875443333 4678


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCcce-EEeccCCCCceeeeeE
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVNFENTS-MIHHNNQTGRWISSFR  466 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~  466 (536)
                      .+.++|++..       +........=+.+.|+|.++++++++.|   |.|.+||........ .+..   .+    +-.
T Consensus       299 ~~s~~~lr~N-------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~---~n----~s~  364 (561)
T COG5354         299 SVSVFDLRGN-------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG---LN----TSY  364 (561)
T ss_pred             ceeecccccc-------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec---CC----ceE
Confidence            8999999872       3444555666778999999999998876   569999976543222 2211   11    112


Q ss_pred             EEEcCCCCEEEEEc------CCCcEEEEcCCcccc
Q 009380          467 AIWGWDDSCVFIGN------MTRTVEVISPAQRRS  495 (536)
Q Consensus       467 ~~~s~~g~~l~~gs------~dg~I~v~d~~~~~~  495 (536)
                      +.|+||++++.+..      .|..|.|||+.+...
T Consensus       365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~  399 (561)
T COG5354         365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV  399 (561)
T ss_pred             eeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence            67999999988764      367899999977643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.07  E-value=3.3e-07  Score=88.28  Aligned_cols=176  Identities=14%  Similarity=0.098  Sum_probs=136.7

Q ss_pred             EEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-eEEEEECCCCeEEEe
Q 009380          242 FLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-LIRLMDAEKEVFDLV  320 (536)
Q Consensus       242 ~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-~I~vwd~~~~~~~~~  320 (536)
                      |++. +|++++..|. |...|.+...    +.  ..-.+|.+.|.-..+.-++ .-++.|..|| .+-|+|.++++...+
T Consensus       327 fa~~-~Gd~ia~VSR-GkaFi~~~~~----~~--~iqv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~  397 (668)
T COG4946         327 FAVV-NGDYIALVSR-GKAFIMRPWD----GY--SIQVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRI  397 (668)
T ss_pred             hccC-CCcEEEEEec-CcEEEECCCC----Ce--eEEcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEe
Confidence            4444 7889988885 7788877653    22  2234677779888888887 7899999999 999999999999888


Q ss_pred             ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC----cEEEEe
Q 009380          321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG----TACIWD  396 (536)
Q Consensus       321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg----~i~iwd  396 (536)
                      ...-+.|.++..+++| ..++++.....|.++|+.+++....-+...+-|+.+.|||++ .++|-+--+|    .|+++|
T Consensus       398 e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklyd  475 (668)
T COG4946         398 EKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYD  475 (668)
T ss_pred             eCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEe
Confidence            8888999999999998 789999999999999999998654444566789999999976 7888776554    689999


Q ss_pred             CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380          397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      +..++     ..........=.+-+|.|++++|.--+
T Consensus       476 m~~~K-----iy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         476 MDGGK-----IYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cCCCe-----EEEecCCcccccCcccCCCCcEEEEEe
Confidence            98853     333333333345678899998776554

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.05  E-value=8.5e-09  Score=95.17  Aligned_cols=249  Identities=12%  Similarity=0.117  Sum_probs=164.6

Q ss_pred             CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE-CCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCe
Q 009380          272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD-AEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGG  348 (536)
Q Consensus       272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd-~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~  348 (536)
                      ...+..+.+|...|++...-|.. .-+++.+.|.+++||- .+.++.-....  ...+++++.+.+.. ..|++|-.+|+
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngt   91 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGT   91 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecce
Confidence            44566788999999988888877 8899999999999995 44454433333  35789999999987 89999999999


Q ss_pred             EEEEECC----CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc
Q 009380          349 LNIWDVR----SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP  424 (536)
Q Consensus       349 i~i~d~~----~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp  424 (536)
                      +.-+.+.    ....++.+..|...|..+-|+-.. .++++.+.|..+.---.+.+........     ....+.+.|.-
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d~  165 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFDA  165 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe-----eccCCCCceee
Confidence            9998664    334466677899999999998754 6888888887765444444321111111     11111111211


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc-eeccCCc
Q 009380          425 SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV-ATLQSPY  503 (536)
Q Consensus       425 ~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~-~~l~~~~  503 (536)
                      .  +...|...|.|.+-.+....+. .+.+.......+..  ..|.+....|++|..|..|.+||+...+-+ ..+.+|+
T Consensus       166 ~--~~fvGd~~gqvt~lr~~~~~~~-~i~~~~~h~~~~~~--l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~  240 (404)
T KOG1409|consen  166 L--YAFVGDHSGQITMLKLEQNGCQ-LITTFNGHTGEVTC--LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN  240 (404)
T ss_pred             E--EEEecccccceEEEEEeecCCc-eEEEEcCcccceEE--EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence            1  4455555566555544322222 22222223333444  679999999999999999999999776543 4455555


Q ss_pred             eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          504 ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       504 ~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ..+.  .+..-+ -...|.+++.||.|.+|+++
T Consensus       241 ~kV~--~l~~~~-~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  241 DKVQ--ALSYAQ-HTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhh--hhhhhh-hheeeeeccCCCeEEEEecc
Confidence            4443  223322 23789999999999999975

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=3.1e-10  Score=110.31  Aligned_cols=245  Identities=15%  Similarity=0.152  Sum_probs=164.6

Q ss_pred             CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-------eEEEe-ecCCCceeEEEecCCCCCEEEEE
Q 009380          272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-------VFDLV-YSSEYAVFSLSQQPNNVNTLYFG  343 (536)
Q Consensus       272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-------~~~~~-~~~~~~i~~l~~~~~~~~~l~~g  343 (536)
                      ...+..|.+|...|..+.-..+. +-+++++.|++|++|.++..       .+... ..|..+|.++.|..+. +.+  +
T Consensus       725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~i--~  800 (1034)
T KOG4190|consen  725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RSI--A  800 (1034)
T ss_pred             eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-cee--e
Confidence            34566788999999988776665 88999999999999998742       23333 3588999999998875 344  5


Q ss_pred             ECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecC-CCCEEEE-EeCCCcEEEEeCCCCCCCCCCcceee---cccCc
Q 009380          344 EGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPR-NPNIMAT-SSTDGTACIWDLRSMATDKPEPMKVL---SHKRA  416 (536)
Q Consensus       344 ~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~-~~~~l~s-~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~  416 (536)
                      +.||.|.+||.--+..+..+.  ...+.+..|...|. ...++.+ ++...+|+++|.|...-..  .....   +....
T Consensus       801 ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~--E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  801 SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC--ELKVCNAPGPNAL  878 (1034)
T ss_pred             eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee--eEEeccCCCCchh
Confidence            668899999988777765332  22233344444342 2234444 4778999999999864211  11222   34567


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE-EcCCcccc
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV-ISPAQRRS  495 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v-~d~~~~~~  495 (536)
                      +.+++..+.|+.++++-..|+|.+.|.++++.+...+...   ..+..+   -.|..+.|+....|.++.| |....+..
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme---cdllql---aapsdq~L~~saldHslaVnWhaldgim  952 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME---CDLLQL---AAPSDQALAQSALDHSLAVNWHALDGIM  952 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc---chhhhh---cCchhHHHHhhcccceeEeeehhcCCee
Confidence            8999999999999999999999999999987665442211   111111   1456678888888899988 98877766


Q ss_pred             ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          496 VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       496 ~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      ..+.+.+.....   +--+  -|.-|+++.....+.||
T Consensus       953 h~q~kpppepah---flqs--vgpSLV~a~~Gn~lgVY  985 (1034)
T KOG4190|consen  953 HLQDKPPPEPAH---FLQS--VGPSLVTAQNGNILGVY  985 (1034)
T ss_pred             eeccCCCCcchh---hhhc--cCceeEEeccCcEEEEE
Confidence            655554332222   1111  24567777776677766

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.00  E-value=5e-09  Score=98.77  Aligned_cols=159  Identities=9%  Similarity=0.096  Sum_probs=116.8

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEE---EECCCeEEEEEC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFT---SCYDGLIRLMDA  312 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s---~s~dg~I~vwd~  312 (536)
                      .+..+..+|  ++.+||++..+....++++.......+....+. -...-+++.|..+. ..+..   ++....+.+|..
T Consensus        64 a~~~~~~s~--~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSD--SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIRED-TSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCC--CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeecc-ceEEEEeecCCceeeeeecc
Confidence            345556677  888888888888877887765332112222221 22223444454444 33333   344556666666


Q ss_pred             CCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          313 EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       313 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ..+....+.+|-..++.++|+||+ .+++++..|..|++-.......+..|. +|..-|..++..++  +.|++||.|++
T Consensus       140 ~~~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sGD~t  216 (390)
T KOG3914|consen  140 DSGRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSGDKT  216 (390)
T ss_pred             cccCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCCCCc
Confidence            668888899999999999999998 899999999999998887666676766 79999999999984  56999999999


Q ss_pred             EEEEeCCCCC
Q 009380          392 ACIWDLRSMA  401 (536)
Q Consensus       392 i~iwdl~~~~  401 (536)
                      |++||+++++
T Consensus       217 lr~Wd~~sgk  226 (390)
T KOG3914|consen  217 LRLWDITSGK  226 (390)
T ss_pred             EEEEecccCC
Confidence            9999999986

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.00  E-value=5.2e-07  Score=99.51  Aligned_cols=331  Identities=14%  Similarity=0.138  Sum_probs=191.5

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC---CC
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK---LG  258 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~---dg  258 (536)
                      +.+.-..+.|-+||.++|...-   ... .+.-..+++|+-...-........+--.+++|-|  .|++||+...   ..
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~---~~~-~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrP--sG~lIA~~q~~~~~~  281 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSV---EPE-TGSRRVIRVYSREGELQSTSEPVDGLEGALSWRP--SGNLIASSQRLPDRH  281 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEE---EcC-CCceeEEEEECCCceEEeccccCCCccCCccCCC--CCCEEEEEEEcCCCc
Confidence            5566778899999999995411   000 0123588999864322222233344456789999  9999998765   34


Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~  334 (536)
                      .|.+|.-... ..+.....+......|..+.|++++ ..|+..-.|. |.+|-..+-..    ...+.....+..+.|+|
T Consensus       282 ~VvFfErNGL-rhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  282 DVVFFERNGL-RHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             EEEEEecCCc-EeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence            6777765421 1122222223456789999999998 8888877665 99999887532    33344455566799999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      ..+..|.+.+.+|.+..+++.-.-     . +..     ...|++.-.+++-. ...+.+-.++......+.........
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~~v-----~-~s~-----~~~~~D~g~vaVID-G~~lllTpf~~a~VPPPMs~~~l~~~  426 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAWDV-----S-RSP-----GSSPNDNGTVAVID-GNKLLLTPFRRAVVPPPMSSYELELP  426 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEEEE-----E-ecC-----CCCccCceEEEEEe-CCeEEEecccccCCCchHhceEEcCC
Confidence            998999999998888877753110     0 000     01121212333332 23577777776542222333444677


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--------eEEecc-----CCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--------SMIHHN-----NQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                      ..|.+++|++++..+++-..||.|.+|........        ..+...     ...........++|..+..+++....
T Consensus       427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (928)
T PF04762_consen  427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS  506 (928)
T ss_pred             CCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence            89999999999888999999999999985432211        111110     00001112223566666666555544


Q ss_pred             C---CcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          482 T---RTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       482 d---g~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      +   ..+.+++.........+.. .........+...+.. ..++.-..||.|...+
T Consensus       507 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~G~v~~~~  562 (928)
T PF04762_consen  507 DSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDS-GSLYIQTNDGKVFQLS  562 (928)
T ss_pred             CcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCC-cEEEEEECCCEEEEee
Confidence            3   5677887743322111111 1111121233444322 3366666788877544

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=5.4e-08  Score=91.77  Aligned_cols=257  Identities=14%  Similarity=0.083  Sum_probs=152.5

Q ss_pred             CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380          272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI  351 (536)
Q Consensus       272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i  351 (536)
                      .+....+.+|...|..++|+|....++..++.+..|.|.|+++......+.....+++++|.-+..++|++|..+|.|.+
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEE
Confidence            34444667788899999999998558999999999999999999888888777999999999999899999999999999


Q ss_pred             EECCCCcc-ceeEec--cCCCeEEEEEec------CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEE
Q 009380          352 WDVRSRKS-ATEWLL--HEARINTIDFNP------RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYF  422 (536)
Q Consensus       352 ~d~~~~~~-~~~~~~--h~~~i~~i~~~p------~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~  422 (536)
                      ||++..+. +..+.+  ...+|..|+.-+      .+ -+++..+.+  +..|.+..... ...+....+..+.+.++.+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt~--l~f~ei~~s~~-~~p~vlele~pG~cismqy  338 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALTV--LQFYEIVFSAE-CLPCVLELEPPGICISMQY  338 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeehh--hhhhhhhcccc-CCCcccccCCCcceeeeee
Confidence            99997643 222221  233444443332      23 244444433  66777654321 1122222344566667777


Q ss_pred             ccCCCeEEEEeCC-C------cEEE-EeCCCCCcceEEecc--CCCCceeeeeEEEE-cCCCCEEE-EEcCCCcEEEEcC
Q 009380          423 SPSGSSLATTSFD-D------TIGI-WSGVNFENTSMIHHN--NQTGRWISSFRAIW-GWDDSCVF-IGNMTRTVEVISP  490 (536)
Q Consensus       423 sp~g~~l~t~s~d-g------~I~i-wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~-s~~g~~l~-~gs~dg~I~v~d~  490 (536)
                      ++..+.++..-.. -      .|-. -|..++.++...+..  ......+..-.+.+ .++..+|+ .|...+.+.+||.
T Consensus       339 ~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~  418 (463)
T KOG1645|consen  339 HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDP  418 (463)
T ss_pred             cCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEecc
Confidence            7744444443322 1      0111 111223222222110  00000111111222 34555544 4555588999999


Q ss_pred             CccccceeccCCceeeeeeeEee-cCCCCCEEEEEccCCeEEEEecC
Q 009380          491 AQRRSVATLQSPYISAIPCRFHA-HPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       491 ~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .+++.++++...  ..+ ..+.. +-+.+.+|+.-++ ..++||..+
T Consensus       419 ~s~evvQ~l~~~--epv-~Dicp~~~n~~syLa~LTd-~~v~Iyk~e  461 (463)
T KOG1645|consen  419 HSFEVVQTLALS--EPV-LDICPNDTNGSSYLALLTD-DRVHIYKNE  461 (463)
T ss_pred             chhheeeecccC--cce-eecceeecCCcchhhheec-ceEEEEecC
Confidence            999999988754  222 22222 2223356666665 578887643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.94  E-value=6.1e-07  Score=90.90  Aligned_cols=194  Identities=11%  Similarity=0.031  Sum_probs=119.7

Q ss_pred             CceEEEEEEecCCccE-EEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--CeEE
Q 009380          235 GRITQMKFLPCSDVRM-VVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--GLIR  308 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~-l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--g~I~  308 (536)
                      +.+....|+|  ||+. ++..+.+   ..|.++|+.++    .. ..+....+......|+|||..++++.+.+  ..|.
T Consensus       188 ~~~~~p~wSp--DG~~~i~y~s~~~~~~~Iyv~dl~tg----~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  260 (419)
T PRK04043        188 GLNIFPKWAN--KEQTAFYYTSYGERKPTLYKYNLYTG----KK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIY  260 (419)
T ss_pred             CCeEeEEECC--CCCcEEEEEEccCCCCEEEEEECCCC----cE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence            4778899999  8874 5544333   46888898763    22 22223455566788999994444555444  5688


Q ss_pred             EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ++|+.++....+..+........|+|+|..++++....|  .|.++|+.+++..+... ....  ...|+|+|..++++.
T Consensus       261 ~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        261 LYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSS  337 (419)
T ss_pred             EEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEE
Confidence            889888877666555444456689999944444443333  68888888776533222 1111  248999996555555


Q ss_pred             eCC--------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC---cEEEEeCC
Q 009380          387 STD--------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD---TIGIWSGV  444 (536)
Q Consensus       387 s~d--------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg---~I~iwd~~  444 (536)
                      ...        ..|.+.|+.++.     ...+... .......|+|||+.|+..+.++   .|.+.++.
T Consensus       338 ~~~~~~~~~~~~~I~v~d~~~g~-----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        338 RETNNEFGKNTFNLYLISTNSDY-----IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             cCCCcccCCCCcEEEEEECCCCC-----eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            433        367888887753     1222222 2334688999999877765432   25556654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.94  E-value=7.2e-08  Score=97.89  Aligned_cols=248  Identities=11%  Similarity=0.093  Sum_probs=172.6

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-----------CCEEEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-----------LSKIFTSC  302 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-----------~~~l~s~s  302 (536)
                      ...-.++.|+|  .| +||.|+. ..|.+-|..+    .+.+..+..|...|+.+.|.|-.           .-.|+++.
T Consensus        15 ~sN~~A~Dw~~--~G-LiAygsh-slV~VVDs~s----~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD   86 (1062)
T KOG1912|consen   15 RSNRNAADWSP--SG-LIAYGSH-SLVSVVDSRS----LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD   86 (1062)
T ss_pred             cccccccccCc--cc-eEEEecC-ceEEEEehhh----hhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc
Confidence            33467889998  54 7777775 4788888877    77888899999999999998742           12567778


Q ss_pred             CCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCC---CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380          303 YDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNN---VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       303 ~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~---~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      ..|.|.+||...+..+.. ..+..++..++|-+..   ..+|++-....+|.+|+..+|+.............|+.+.|-
T Consensus        87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPf  166 (1062)
T KOG1912|consen   87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPF  166 (1062)
T ss_pred             ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCC
Confidence            889999999988765544 4567889999997642   246777777789999999999988887766677788999997


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCC--Ccceee-cccC-------------------------ceeEEEEccCCCeEE
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKP--EPMKVL-SHKR-------------------------AVHSAYFSPSGSSLA  430 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~--~~~~~~-~~~~-------------------------~v~~l~~sp~g~~l~  430 (536)
                      +...|..-+..|.+.+.+.-..+....  ..+.+. .|..                         ....++|+|.-+.++
T Consensus       167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            777777777788888777544321110  111111 1211                         012356788766666


Q ss_pred             EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          431 TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      .......+.|+|+.-..++..+.........+.   +.-.|....|+++-.||.+.+|-...
T Consensus       247 fi~~prellv~dle~~~~l~vvpier~~akfv~---vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIERGGAKFVD---VLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEeccCCcceeE---eccCCCcceEEEEecCCeEEEEEeec
Confidence            667778899999987777766654433222222   22234455799999999999997654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.90  E-value=1.7e-07  Score=94.43  Aligned_cols=229  Identities=12%  Similarity=0.090  Sum_probs=155.8

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEeccccc----------------CccccccccCCceEEEEEEecCCc
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL----------------KPENIARIMPGRITQMKFLPCSDV  248 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~----------------~~~~~~~~~~~~I~~v~~~p~~~~  248 (536)
                      ...|+.+.....+++.          ++.||.+++-.+..                .-++.+.+|.+.|.-+.|+.  ..
T Consensus        16 kL~c~~WNke~gyIAc----------gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe--~~   83 (1189)
T KOG2041|consen   16 KLHCAEWNKESGYIAC----------GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE--NN   83 (1189)
T ss_pred             eEEEEEEcccCCeEEe----------ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc--cc
Confidence            4567777777777763          34444444443311                12345678999999999998  77


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF  328 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~  328 (536)
                      ..|-+.+.+|.|.||-+..+..  -.-..-......|.+++|+.+| ..++..-.||.|.|-.++...+--..-......
T Consensus        84 QKLTtSDt~GlIiVWmlykgsW--~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~  160 (1189)
T KOG2041|consen   84 QKLTTSDTSGLIIVWMLYKGSW--CEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA  160 (1189)
T ss_pred             ccccccCCCceEEEEeeecccH--HHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchhecc
Confidence            8899999999999999986431  1111222345678999999999 999999999999998887654321111123345


Q ss_pred             EEEecCCCCCEEEEEECCCeEEEEECCCCc-------cce----eEeccCCCeEEEEEe--------cCCCCEEEEEeCC
Q 009380          329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-------SAT----EWLLHEARINTIDFN--------PRNPNIMATSSTD  389 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-------~~~----~~~~h~~~i~~i~~~--------p~~~~~l~s~s~d  389 (536)
                      .+.|+++. ..++.+-.+|.+.+||....-       +.-    .+......|..++|.        |+. -.|+.+-.+
T Consensus       161 hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~n  238 (1189)
T KOG2041|consen  161 HVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYAN  238 (1189)
T ss_pred             ceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcC
Confidence            78899998 678888889999999975321       101    111233447777775        344 378888889


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD  435 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d  435 (536)
                      |.+.|-.-.+.    +.+. +......+..+.|+++|..|++++.+
T Consensus       239 Gr~QiMR~eND----~~Pv-v~dtgm~~vgakWnh~G~vLAvcG~~  279 (1189)
T KOG2041|consen  239 GRMQIMRSEND----PEPV-VVDTGMKIVGAKWNHNGAVLAVCGND  279 (1189)
T ss_pred             ceehhhhhcCC----CCCe-EEecccEeecceecCCCcEEEEccCc
Confidence            98888644332    2222 23344788999999999999999864

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.90  E-value=6.7e-07  Score=90.73  Aligned_cols=264  Identities=9%  Similarity=0.020  Sum_probs=154.8

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----------CCEE-EEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----------GPIS-GIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----------~~V~-~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .+..|++++.+|.|.-+|..+    ++.+.......          ..+. .+..  .+ ..++.++.+|.+..+|.+++
T Consensus        68 ~~~~vy~~~~~g~l~ald~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~-~~v~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADT----GKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AG-GKVYIGSEKGQVYALNAEDG  140 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCC----CcEeeEEcCCCcccccccccccccccccEE--EC-CEEEEEcCCCEEEEEECCCC
Confidence            345677777788888888876    33333322111          0010 1111  23 67888889999999999999


Q ss_pred             eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-----EEEEEecCCCCEEEEEeCCC
Q 009380          316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-----NTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-----~~i~~~p~~~~~l~s~s~dg  390 (536)
                      +..........+.+--...+  ..+++++.+|.|..+|..+|+.+..+......+     .+-...  + ..++.++.+|
T Consensus       141 ~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~g  215 (394)
T PRK11138        141 EVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDNG  215 (394)
T ss_pred             CCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCCC
Confidence            87666554444332111112  478888889999999999999877665321110     111111  2 2466677789


Q ss_pred             cEEEEeCCCCCCCCCCcceee--ccc-CceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          391 TACIWDLRSMATDKPEPMKVL--SHK-RAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~--~~~-~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      .+..+|..+++..........  .+. .....+..+|  .+..+++++.+|.+..+|..+++.+........    ..  
T Consensus       216 ~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~----~~--  289 (394)
T PRK11138        216 RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV----ND--  289 (394)
T ss_pred             EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc----cC--
Confidence            999999888752111100000  000 0011122233  355677788899999999999876655432111    01  


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                       +  ...+..|++++.++.+..+|..+++.+........... .....   .+..|+.++.||.|++.|.
T Consensus       290 -~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-~sp~v---~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        290 -F--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL-TAPVL---YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             -c--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc-cCCEE---ECCEEEEEeCCCEEEEEEC
Confidence             1  12456788888999999999999987665432111111 11111   1367888889999888775

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.90  E-value=4e-08  Score=89.53  Aligned_cols=245  Identities=16%  Similarity=0.216  Sum_probs=163.2

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-c-----cccccc------------CCceEEEEEE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-E-----NIARIM------------PGRITQMKFL  243 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~-----~~~~~~------------~~~I~~v~~~  243 (536)
                      ..+.|.++.|...|.++++.          ...|.|.++.-.... .     .-.+.|            ...|..+.|.
T Consensus        25 ead~ItaVefd~tg~YlatG----------DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~   94 (460)
T COG5170          25 EADKITAVEFDETGLYLATG----------DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF   94 (460)
T ss_pred             ccceeeEEEeccccceEeec----------CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence            45778899999999999944          555677777532111 0     012333            4578999998


Q ss_pred             ecCCccEEEEEeCCCcEEEEECCCCCC----------------C-----------------CCce-----EEe-ccCCCC
Q 009380          244 PCSDVRMVVAGSKLGNITFWNLDSQQD----------------E-----------------DNGI-----YLF-RTHLGP  284 (536)
Q Consensus       244 p~~~~~~l~tg~~dg~v~iwd~~~~~~----------------~-----------------~~~~-----~~~-~~h~~~  284 (536)
                      .......++..+.|.+|++|.+.....                .                 ...+     +.+ ..|.-.
T Consensus        95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh  174 (460)
T COG5170          95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH  174 (460)
T ss_pred             cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence            744445677778899999999864300                0                 0000     111 357777


Q ss_pred             EEEEEEecCCCCEEEEEECCCeEEEEECCC--CeE--EEeecC-----CCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380          285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEK--EVF--DLVYSS-----EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR  355 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~--~~~--~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~  355 (536)
                      |.++.|+.+. ..++++. |=.|.+|+++-  +.+  ..+..|     ..-|++..|+|...+.+.-.+..|.|++-|+|
T Consensus       175 iNSiS~NsD~-et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR  252 (460)
T COG5170         175 INSISFNSDK-ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR  252 (460)
T ss_pred             eeeeeecCch-heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence            9999999986 6666664 77899999874  322  222233     24688999999887888888999999999999


Q ss_pred             CCcc------cee----------EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cc-----
Q 009380          356 SRKS------ATE----------WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SH-----  413 (536)
Q Consensus       356 ~~~~------~~~----------~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~-----  413 (536)
                      ....      +..          +.+-...|..+.|++.| .++++-+. -+|+|||++..+    .++... -|     
T Consensus       253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k----~pikTi~~h~~l~~  326 (460)
T COG5170         253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAK----NPIKTIPMHCDLMD  326 (460)
T ss_pred             hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEeccccc----CCceeechHHHHHH
Confidence            4321      111          11223568899999976 67777664 589999999854    232222 22     


Q ss_pred             -------cCce---eEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          414 -------KRAV---HSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       414 -------~~~v---~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                             ...|   ..+.|+.+.+.+++|++.+..-+|-..
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                   1222   357888888999999998888887643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=4.4e-09  Score=97.08  Aligned_cols=164  Identities=18%  Similarity=0.177  Sum_probs=122.3

Q ss_pred             EEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-----ccceeE
Q 009380          289 VTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-----KSATEW  363 (536)
Q Consensus       289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~  363 (536)
                      +|+-+-..+=++.+.+..|-+-|++++....+. ..+.|.++.|...+ ++++.|+.+|.|..+|+|.+     .+...+
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl  295 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL  295 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence            555332123366677888889999988665444 77889999999877 89999999999999999975     334444


Q ss_pred             eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEE--EccCCCeEEEEeCCCcEEEE
Q 009380          364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAY--FSPSGSSLATTSFDDTIGIW  441 (536)
Q Consensus       364 ~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~--~sp~g~~l~t~s~dg~I~iw  441 (536)
                      . |...|+++.......++|++.+.+|.|++||+|..++.. .+....+|-..-.-+-  ..+....+++++.|...+||
T Consensus       296 y-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW  373 (425)
T KOG2695|consen  296 Y-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW  373 (425)
T ss_pred             E-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence            4 999999998877444789999999999999999876432 3445556654433333  34455678889999999999


Q ss_pred             eCCCCCcceEEeccC
Q 009380          442 SGVNFENTSMIHHNN  456 (536)
Q Consensus       442 d~~~~~~~~~~~~~~  456 (536)
                      .++.+..+.+++...
T Consensus       374 sl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  374 SLDSGHLLCTIPFPY  388 (425)
T ss_pred             ecccCceeeccCCCC
Confidence            999998888775443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.89  E-value=5e-09  Score=96.68  Aligned_cols=155  Identities=14%  Similarity=0.137  Sum_probs=121.6

Q ss_pred             EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380          341 YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA  420 (536)
Q Consensus       341 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l  420 (536)
                      ++.+.+-.|.+-|+.++... .|. ..+.|.++.|+..+ +++..|+.+|.|..+|+|........+.....|...|+++
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl  304 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL  304 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence            44555668999999887532 333 67789999999866 6999999999999999998765556777788899999999


Q ss_pred             EEcc-CCCeEEEEeCCCcEEEEeCCCCCc---ceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          421 YFSP-SGSSLATTSFDDTIGIWSGVNFEN---TSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       421 ~~sp-~g~~l~t~s~dg~I~iwd~~~~~~---~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      ..-. ++++|++.+.+|+|++||++-.++   +..+. |.+...    .+-+...+....+++++.|...+||.+..+..
T Consensus       305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a----~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA----YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc----ccccccccccceEEEccCeeEEEEEecccCce
Confidence            8877 788999999999999999987666   44442 333222    22244567777899999999999999999999


Q ss_pred             ceeccCC
Q 009380          496 VATLQSP  502 (536)
Q Consensus       496 ~~~l~~~  502 (536)
                      +.+++..
T Consensus       381 l~tipf~  387 (425)
T KOG2695|consen  381 LCTIPFP  387 (425)
T ss_pred             eeccCCC
Confidence            8888754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.88  E-value=4.9e-08  Score=100.84  Aligned_cols=183  Identities=18%  Similarity=0.190  Sum_probs=136.4

Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE
Q 009380          295 LSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI  373 (536)
Q Consensus       295 ~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i  373 (536)
                      +..++-|+....+..+|+++.+........ ..|.-|+.+  + +.+++|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf  223 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF  223 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence            467788888888889999998777666543 356666654  3 689999999999999999999999999999999998


Q ss_pred             EEecCCCCEEEEEeC---------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-CCeEEEEeCCCcEEEEeC
Q 009380          374 DFNPRNPNIMATSST---------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~---------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~dg~I~iwd~  443 (536)
                      ..+  | +.|++|+.         |..|+|||+|.....    ..+.-+. ...-+.|+|. ...+++++..|...+-|.
T Consensus       224 Dv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral----~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~  295 (1118)
T KOG1275|consen  224 DVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL----SPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDT  295 (1118)
T ss_pred             ecc--C-CeEEEeecccccccccccchhhhhhhhhhhcc----CCccccc-CchhhhhcccccceEEEEecccceeeccc
Confidence            886  4 78888875         567899999997522    2221122 2256788884 356888889999999995


Q ss_pred             CCCC-cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          444 VNFE-NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       444 ~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      .+.. +.....+.++.+..+..  ..+|++++.++.|..+|.|.+|.-
T Consensus       296 ~~lsNP~~~~~~v~p~~s~i~~--fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  296 ATLSNPPAGVKMVNPNGSGISA--FDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccCCCccceeEEccCCCccee--EEecCCCceEEEecccCcEeeecC
Confidence            4433 22333333444444454  557999999999999999999973

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=1.8e-06  Score=87.60  Aligned_cols=262  Identities=13%  Similarity=0.128  Sum_probs=157.2

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA  326 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~  326 (536)
                      ++..++.++.+|.+..+|..+    ++.+................  + ..++.++.++.|..+|..+++....+....+
T Consensus       119 ~~~~v~v~~~~g~l~ald~~t----G~~~W~~~~~~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~  191 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAED----GEVAWQTKVAGEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVP  191 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCC----CCCcccccCCCceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence            345677788899999999987    44444443322111111121  3 5777888899999999999987765543322


Q ss_pred             eeEEE--ecC--CCCCEEEEEECCCeEEEEECCCCccceeEeccCC-------CeEEEEEec--CCCCEEEEEeCCCcEE
Q 009380          327 VFSLS--QQP--NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA-------RINTIDFNP--RNPNIMATSSTDGTAC  393 (536)
Q Consensus       327 i~~l~--~~~--~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~-------~i~~i~~~p--~~~~~l~s~s~dg~i~  393 (536)
                      ...+.  -+|  .+ ..+++++.+|.+..+|..+++.+........       ....+..+|  .+ ..++.++.+|.+.
T Consensus       192 ~~~~~~~~sP~v~~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l~  269 (394)
T PRK11138        192 SLTLRGESAPATAF-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNLV  269 (394)
T ss_pred             cccccCCCCCEEEC-CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeEE
Confidence            11100  011  12 3677888899999999999987655431110       011111122  13 3566677799999


Q ss_pred             EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC
Q 009380          394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD  473 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  473 (536)
                      .+|+.+++.    .-.. .. .....+..  .+..|+.++.+|.+..+|..+++.+......  .......  ...  .+
T Consensus       270 ald~~tG~~----~W~~-~~-~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~s--p~v--~~  335 (394)
T PRK11138        270 ALDLRSGQI----VWKR-EY-GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTA--PVL--YN  335 (394)
T ss_pred             EEECCCCCE----EEee-cC-CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccC--CEE--EC
Confidence            999998742    1111 11 11111222  4667888889999999999888765433211  1111111  111  24


Q ss_pred             CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          474 SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       474 ~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .+|++++.+|.|.++|..+|+.+.+......... ..-...   ++.|+.++.||.|+.+++
T Consensus       336 g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~-s~P~~~---~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        336 GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFL-SEPVVA---DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcce-eCCEEE---CCEEEEEeCCceEEEEeC
Confidence            5788899999999999999998877654222111 111111   368999999999998864

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.86  E-value=7.4e-07  Score=85.89  Aligned_cols=248  Identities=13%  Similarity=0.069  Sum_probs=157.7

Q ss_pred             ccceEEecccccCccccccccCC--ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceE--Ee-----ccCCC
Q 009380          213 VGSCVDIGSLTLKPENIARIMPG--RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY--LF-----RTHLG  283 (536)
Q Consensus       213 ~dg~v~lw~~~~~~~~~~~~~~~--~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~--~~-----~~h~~  283 (536)
                      .+|.=.||..+++.... +-|++  .-++=-.+  .||+.|+.. .-|.|.+||..+...+.-.+-  ..     .....
T Consensus       244 ~eG~GnlYSvdldGkDl-rrHTnFtdYY~R~~n--sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~  319 (668)
T COG4946         244 HEGVGNLYSVDLDGKDL-RRHTNFTDYYPRNAN--SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVN  319 (668)
T ss_pred             ccCccceEEeccCCchh-hhcCCchhccccccC--CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccC
Confidence            34444555555554443 33322  11222222  388777654 458899999887432110000  00     00111


Q ss_pred             CEEEEE-EecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-eEEEEECCCCccce
Q 009380          284 PISGIV-TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-GLNIWDVRSRKSAT  361 (536)
Q Consensus       284 ~V~~l~-~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-~i~i~d~~~~~~~~  361 (536)
                      +..-+. |++..+++++..|. |...+.+...+-.. ..++.+.|.-..+..++ +-++.|..|| .|.|||.++++ +.
T Consensus       320 pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~i-qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e-~k  395 (668)
T COG4946         320 PSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSI-QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGE-VK  395 (668)
T ss_pred             HHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeE-EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCce-EE
Confidence            122222 45544488888874 55667666555443 34566678888888776 5889999998 89999998876 45


Q ss_pred             eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC----c
Q 009380          362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD----T  437 (536)
Q Consensus       362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg----~  437 (536)
                      .+...-+.|.++..+|+| .+++.+.....|-+.|+.+++    ....-....+-|+.+.|+|++++||-+--+|    .
T Consensus       396 r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~  470 (668)
T COG4946         396 RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQS  470 (668)
T ss_pred             EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCceeEEEecCcceeeee
Confidence            556677899999999988 678888878889999999974    2222334567899999999999999876655    5


Q ss_pred             EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380          438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                      |++||+.+++.....   .++.   .-+..+|.|++++|.--
T Consensus       471 Iklydm~~~Kiy~vT---T~ta---~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         471 IKLYDMDGGKIYDVT---TPTA---YDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEEEecCCCeEEEec---CCcc---cccCcccCCCCcEEEEE
Confidence            999999876544322   1221   23447788888876543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=1.4e-06  Score=81.78  Aligned_cols=220  Identities=11%  Similarity=0.097  Sum_probs=136.0

Q ss_pred             CCcEEEEECCCCCCCCCceEEeccC--CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTH--LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      +|+|..||..+    +..+.....-  .....+. ..+++ ..+++++.++.|..||..+|+....+.....+...-...
T Consensus         2 ~g~l~~~d~~t----G~~~W~~~~~~~~~~~~~~-~~~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRT----GKELWSYDLGPGIGGPVAT-AVPDG-GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD   75 (238)
T ss_dssp             TSEEEEEETTT----TEEEEEEECSSSCSSEEET-EEEET-TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred             CCEEEEEECCC----CCEEEEEECCCCCCCccce-EEEeC-CEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec
Confidence            67888899876    5566555431  1222222 23344 788888999999999999998776665544433322222


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeE-eccC---CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHE---ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~---~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                       + ..+++++.++.|..+|..+|+.+... ....   ...........+ ..++.+..++.|..+|+++++    .....
T Consensus        76 -~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~----~~w~~  148 (238)
T PF13360_consen   76 -G-GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK----LLWKY  148 (238)
T ss_dssp             -T-TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE----EEEEE
T ss_pred             -c-cccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-CEEEEEeccCcEEEEecCCCc----EEEEe
Confidence             2 47788888899999999999998774 3221   111222222224 577778779999999999875    22222


Q ss_pred             ecccC----------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380          411 LSHKR----------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       411 ~~~~~----------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                      .....          .+..-....++ .++.++.++.+..+|+.+++......   ...  ..   .....++..|++++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~--~~---~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISG--IY---SLPSVDGGTLYVTS  219 (238)
T ss_dssp             ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS---EC---ECEECCCTEEEEEE
T ss_pred             ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCC--cc---CCceeeCCEEEEEe
Confidence            22111          11222222244 77777778864444999888553221   111  11   11346778888888


Q ss_pred             CCCcEEEEcCCcccccee
Q 009380          481 MTRTVEVISPAQRRSVAT  498 (536)
Q Consensus       481 ~dg~I~v~d~~~~~~~~~  498 (536)
                      .++.|..||+.+++.+.+
T Consensus       220 ~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  220 SDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             TTTEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCCCCEEeE
Confidence            999999999999987643

...

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.85  E-value=9.1e-06  Score=76.69  Aligned_cols=223  Identities=13%  Similarity=0.100  Sum_probs=141.3

Q ss_pred             EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE
Q 009380          239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD  318 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~  318 (536)
                      ++.|.+. ++.++++--..+.|..|+..+     .....+....  ...+.+...+ ..|+.+..++ +.++|+.+++..
T Consensus         4 gp~~d~~-~g~l~~~D~~~~~i~~~~~~~-----~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPR-DGRLYWVDIPGGRIYRVDPDT-----GEVEVIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEETTT-----TEEEEEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEE
T ss_pred             ceEEECC-CCEEEEEEcCCCEEEEEECCC-----CeEEEEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEE
Confidence            4677763 566777777789999999986     2232232222  6777887333 5666666555 556699988765


Q ss_pred             EeecC------CCceeEEEecCCCCCEEEEEECC--------CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          319 LVYSS------EYAVFSLSQQPNNVNTLYFGEGQ--------GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       319 ~~~~~------~~~i~~l~~~~~~~~~l~~g~~d--------g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      .+...      ....+.+++.++| ++.++....        |.|..++.. ++. ..+...-...+.|+|+|++..+++
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEE
T ss_pred             EEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheee
Confidence            55432      3567899999998 555554433        568888877 443 333334566799999999865666


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      +-+..+.|..|++............+.   ...+..-.++++.+|++.++....+.|.++|.. ++.+..+....  . .
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~-~  226 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--P-R  226 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--S-S
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--C-C
Confidence            777888999999875321000111111   112247889999999988887788999999987 77776665431  1 2


Q ss_pred             eeeeEEEE-cCCCCEEEEEc
Q 009380          462 ISSFRAIW-GWDDSCVFIGN  480 (536)
Q Consensus       462 ~~~~~~~~-s~~g~~l~~gs  480 (536)
                      .+.  ++| .++.+.|++.+
T Consensus       227 ~t~--~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  227 PTN--CAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEE--EEEESTTSSEEEEEE
T ss_pred             EEE--EEEECCCCCEEEEEe
Confidence            333  667 46666665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.85  E-value=7.3e-06  Score=77.37  Aligned_cols=211  Identities=15%  Similarity=0.107  Sum_probs=134.6

Q ss_pred             EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-
Q 009380          287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-  365 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-  365 (536)
                      ++.|.+....++++--..+.|..|+..++.........  ...+++...+ ..|+++... .+.++|+.+++....... 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence            57898844266666667899999999998765543333  7777777333 466777665 556669988865433332 


Q ss_pred             ----cCCCeEEEEEecCCCCEEEEEeCC--------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE-EE
Q 009380          366 ----HEARINTIDFNPRNPNIMATSSTD--------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA-TT  432 (536)
Q Consensus       366 ----h~~~i~~i~~~p~~~~~l~s~s~d--------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~-t~  432 (536)
                          .....+.+++.|+| ++.++....        |.|..++.. +     ........-...+.|+|+|+++.|+ +-
T Consensus        80 ~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~-----~~~~~~~~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-G-----KVTVVADGLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S-----EEEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred             CCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-C-----eEEEEecCcccccceEECCcchheeecc
Confidence                33567899999988 566665543        457777766 2     2333334456678999999998765 55


Q ss_pred             eCCCcEEEEeCCCCCc----ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeee
Q 009380          433 SFDDTIGIWSGVNFEN----TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP  508 (536)
Q Consensus       433 s~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~  508 (536)
                      +..+.|..|++.....    ...+..........--  ++++.+|++.++....+.|.+++.. |+.+..+.......  
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG--~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~--  227 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDG--LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRP--  227 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEE--EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSE--
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCc--ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCE--
Confidence            6778899999864332    1222111111111222  5678899888887788999999988 77877777653333  


Q ss_pred             eeEee
Q 009380          509 CRFHA  513 (536)
Q Consensus       509 ~~~~~  513 (536)
                      +.++|
T Consensus       228 t~~~f  232 (246)
T PF08450_consen  228 TNCAF  232 (246)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44555

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=2.1e-09  Score=109.99  Aligned_cols=223  Identities=16%  Similarity=0.201  Sum_probs=154.7

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      +.+-..++-|....+|++|+-  +.+.|+.|+..|.|++|++.+    +.....+.+|..+|+-+.-+.+|..+|.+++.
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~--~~~hL~vG~~~Geik~~nv~s----G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG--GTNHLAVGSHAGEIKIFNVSS----GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred             cccchhhhccccceeeEEeec--CCceEEeeeccceEEEEEccC----ccccccccccccccccccccCCcceeeeeccc
Confidence            344455677788999999999  889999999999999999998    67777889999999999999999444444444


Q ss_pred             CC-eEEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe----ccCCCeEEEEEec
Q 009380          304 DG-LIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL----LHEARINTIDFNP  377 (536)
Q Consensus       304 dg-~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~h~~~i~~i~~~p  377 (536)
                      .. -..+|++.. +.....+   ..-.++.|+... ..-+.|+......+||+.++..+.++-    +....-++..|+|
T Consensus      1165 S~PlsaLW~~~s~~~~~Hsf---~ed~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPRHSF---DEDKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred             cCchHHHhccccccCccccc---cccceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence            44 567899865 2222222   234566777654 445556666689999999998876632    2223347889999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380          378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ  457 (536)
Q Consensus       378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~  457 (536)
                      ++. +++   .||  .+||+|..+    .+..+.... .--.-.|+|+|..++.-+     .|||+++++.++.++.-++
T Consensus      1241 ~D~-LIl---ndG--vLWDvR~~~----aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1241 CDT-LIL---NDG--VLWDVRIPE----AIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ 1304 (1516)
T ss_pred             Ccc-eEe---eCc--eeeeeccHH----HHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccccc
Confidence            873 443   466  589999842    333332222 222346999999888765     4999999888776643322


Q ss_pred             CCceeeeeEEEEcCCCCEEEEE
Q 009380          458 TGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       458 ~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                             .++.|+..|..++..
T Consensus      1305 -------c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1305 -------CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             -------eEEEeccCccchhhh
Confidence                   235677777665443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.82  E-value=2.6e-07  Score=93.92  Aligned_cols=246  Identities=10%  Similarity=0.052  Sum_probs=169.0

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCC-----------CCEEEEEECCCe
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNN-----------VNTLYFGEGQGG  348 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~-----------~~~l~~g~~dg~  348 (536)
                      |...-.++.|+|.|  +|+.|+ ...|.+-|..+-+.+. +..|...|+.+.|.|..           .-+|+++...|.
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr   90 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR   90 (1062)
T ss_pred             CcccccccccCccc--eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence            34446788999986  666666 5568888887765444 44577899999997742           125677778899


Q ss_pred             EEEEECCCCccceeEeccCCCeEEEEEecC---CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-
Q 009380          349 LNIWDVRSRKSATEWLLHEARINTIDFNPR---NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-  424 (536)
Q Consensus       349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~---~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-  424 (536)
                      |.+||...+..+..+..|.+++..++|-+.   ..++|++-....+|.+|+..+|+    .............++.++| 
T Consensus        91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~----k~Wk~~ys~~iLs~f~~DPf  166 (1062)
T KOG1912|consen   91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE----KFWKYDYSHEILSCFRVDPF  166 (1062)
T ss_pred             EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc----eeeccccCCcceeeeeeCCC
Confidence            999999999888899999999999999863   22567777777899999999874    3333333345667799999 


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCC----cceEEe----ccC--------CCCce-----------eeeeEEEEcCCCCEEE
Q 009380          425 SGSSLATTSFDDTIGIWSGVNFE----NTSMIH----HNN--------QTGRW-----------ISSFRAIWGWDDSCVF  477 (536)
Q Consensus       425 ~g~~l~t~s~dg~I~iwd~~~~~----~~~~~~----~~~--------~~~~~-----------~~~~~~~~s~~g~~l~  477 (536)
                      |.+.+..-+..|.+.+-+.-...    +.+.+.    |..        .++..           ..+.+.+|+|.-+.++
T Consensus       167 d~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l  246 (1062)
T KOG1912|consen  167 DSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL  246 (1062)
T ss_pred             CcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence            66777777778877776643211    112221    110        00000           0112356777655555


Q ss_pred             EEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          478 IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       478 ~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .....+.+.|+|++-..++..+.-+...+....+-..|.+ +.|.+.-.||.+.||-
T Consensus       247 fi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r-d~LfclH~nG~ltirv  302 (1062)
T KOG1912|consen  247 FITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR-DALFCLHSNGRLTIRV  302 (1062)
T ss_pred             EEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc-ceEEEEecCCeEEEEE
Confidence            5556788999999988888887765555554455555644 7899999999999995

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.82  E-value=8e-07  Score=79.69  Aligned_cols=224  Identities=10%  Similarity=0.060  Sum_probs=140.3

Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-----CCCCEEEEEECCCeEEEEECCCCeEE--EeecCCCceeE
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-----YCLSKIFTSCYDGLIRLMDAEKEVFD--LVYSSEYAVFS  329 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-----~~~~~l~s~s~dg~I~vwd~~~~~~~--~~~~~~~~i~~  329 (536)
                      ...|-+|++.+..  ...+..+       ..+.|.|     .. .+|+.|+.-|...+|...+....  ..-.+...|+-
T Consensus        51 t~sv~i~~~y~N~--~~iv~~y-------~g~~F~p~s~~~kc-~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~  120 (344)
T KOG4532|consen   51 TISVPINSHYSNP--KGIVEFY-------TGMTFTPGSFINKC-VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL  120 (344)
T ss_pred             eeeeEeccccCCc--hhhEEee-------ecccccchHhhccc-cEEEeccccceeeeecccCcccceeeecccccchhh
Confidence            3457778877632  1122222       2344444     23 68999999999999998865332  22223333322


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC--CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      +.-..+...-+..++.|.+++++++.-+..-..  .|..  .++++++++++ .++++.+....|..|.+.....   ..
T Consensus       121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~se---y~  194 (344)
T KOG4532|consen  121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESE---YI  194 (344)
T ss_pred             hhhhcccccceeeccCCcceeEEEEecCcccce--eeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccc---ee
Confidence            211122223467788888898888865433222  2333  37899999987 7999999889999999886431   22


Q ss_pred             ce--eecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe---ccCCCCceeeeeEEEEcCCCC--EEEEEc
Q 009380          408 MK--VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH---HNNQTGRWISSFRAIWGWDDS--CVFIGN  480 (536)
Q Consensus       408 ~~--~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~g~--~l~~gs  480 (536)
                      ..  .......-.+.+|+.....+|++..||++.|||++.........   .....| .+..  +.|++.|.  +|+..-
T Consensus       195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~--c~Fsl~g~lDLLf~sE  271 (344)
T KOG4532|consen  195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRV--CRFSLYGLLDLLFISE  271 (344)
T ss_pred             eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEE--EEecCCCcceEEEEec
Confidence            22  22345556778999999999999999999999998765433221   111222 2333  66887654  466665


Q ss_pred             CCCcEEEEcCCccccceec
Q 009380          481 MTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       481 ~dg~I~v~d~~~~~~~~~l  499 (536)
                      .-+.+.|.|++++...+.+
T Consensus       272 hfs~~hv~D~R~~~~~q~I  290 (344)
T KOG4532|consen  272 HFSRVHVVDTRNYVNHQVI  290 (344)
T ss_pred             CcceEEEEEcccCceeeEE
Confidence            6678999999888654443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.79  E-value=1.1e-07  Score=89.88  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=108.7

Q ss_pred             EEEEecCCCCEEEEEECCCeEEEEECCCC----eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC---CCCcc
Q 009380          287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV---RSRKS  359 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~---~~~~~  359 (536)
                      .+..++.+ .+|+.+..+....+++....    ++...+......+++.|..+. ..+.++..-|.++-+|+   ..+. 
T Consensus        67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~~-  143 (390)
T KOG3914|consen   67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADSGR-  143 (390)
T ss_pred             ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeecccccC-
Confidence            34455555 77777777777666665543    233333344455566665555 44555544444444444   3333 


Q ss_pred             ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380          360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                      ...+.+|-..+..|+|+||+ ++++++..|..|+|-......    .+..+ .+|..-|..++.-++. .|+++|.|++|
T Consensus       144 ~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f----~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tl  217 (390)
T KOG3914|consen  144 CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF----VIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTL  217 (390)
T ss_pred             cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc----chhhhccccHhheeeeeeccCc-eeeecCCCCcE
Confidence            33445799999999999988 799999999999998776531    22222 3899999999998755 48999999999


Q ss_pred             EEEeCCCCCcceEEe
Q 009380          439 GIWSGVNFENTSMIH  453 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~  453 (536)
                      ++||+.+++.+.++.
T Consensus       218 r~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  218 RLWDITSGKLLDTCD  232 (390)
T ss_pred             EEEecccCCcccccc
Confidence            999999999887664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.74  E-value=2.6e-06  Score=79.96  Aligned_cols=217  Identities=15%  Similarity=0.116  Sum_probs=132.3

Q ss_pred             CCeEEEEECCCCeEEEeecCCCceeEEE--ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          304 DGLIRLMDAEKEVFDLVYSSEYAVFSLS--QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~~~~~~~i~~l~--~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      +|+|..||..+++..........+....  ..+++ ..+++++.++.|..||..+|+.+..+.. ...+...-... + .
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~-~-~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG-GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD-G-G   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET-TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE-T-T
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC-CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec-c-c
Confidence            6899999999988776665422222222  22233 5788889999999999999998877764 22222111222 3 3


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCccee-eccc---CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKV-LSHK---RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ  457 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~---~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~  457 (536)
                      .++.++.++.|..+|..+++    ..... ....   ...........+..++++..++.|..+|+.+++.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGK----VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSC----EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcc----eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            56666678899999998875    22221 1110   1112222333478888888899999999999998877754332


Q ss_pred             CC-ceee-----eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380          458 TG-RWIS-----SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY  531 (536)
Q Consensus       458 ~~-~~~~-----~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~  531 (536)
                      .. ..+.     ...+.+. ++ .+++++.++.+..+|..+++.+.... .+. .. ..  ..+ .+..|+.++.+|.|.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~-~~-~~--~~~-~~~~l~~~~~~~~l~  225 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG-IY-SL--PSV-DGGTLYVTSSDGRLY  225 (238)
T ss_dssp             -SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-SS--EC-EC--EEC-CCTEEEEEETTTEEE
T ss_pred             CCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC-cc-CC--cee-eCCEEEEEeCCCEEE
Confidence            21 1110     0112222 34 77778778764444999998664333 111 11 11  222 357888888999999


Q ss_pred             EEecC
Q 009380          532 VWTSD  536 (536)
Q Consensus       532 iW~~d  536 (536)
                      .||+.
T Consensus       226 ~~d~~  230 (238)
T PF13360_consen  226 ALDLK  230 (238)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99974

...

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=4.9e-07  Score=92.63  Aligned_cols=187  Identities=13%  Similarity=0.109  Sum_probs=134.3

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      .+.|+|++++-    .+|+-|+.+|.|++++...     .. .....|+..      ...| .+++|||.||+|.|..+-
T Consensus        39 ~D~is~~av~~----~~~~~GtH~g~v~~~~~~~-----~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~  101 (846)
T KOG2066|consen   39 NDAISCCAVHD----KFFALGTHRGAVYLTTCQG-----NP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLF  101 (846)
T ss_pred             hhHHHHHHhhc----ceeeeccccceEEEEecCC-----cc-ccccccccc------ccCC-ceEEEecCCCcEEEeecc
Confidence            46788999964    7999999999999999874     33 444455544      4566 999999999999999999


Q ss_pred             CCeEEEeecCCCceeEEEecCC----CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          314 KEVFDLVYSSEYAVFSLSQQPN----NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       314 ~~~~~~~~~~~~~i~~l~~~~~----~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +......+....++.+++++|+    ....+++|+.-| +.++.-+-...  ...+..-.++|.+|+|.  | +++|-++
T Consensus       102 ~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWan  177 (846)
T KOG2066|consen  102 TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWAN  177 (846)
T ss_pred             CCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--C-cEEEEec
Confidence            8888788888899999999998    235789999888 87776442111  12345567899999998  4 7888888


Q ss_pred             CCCcEEEEeCCCCCCCCCC--cceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          388 TDGTACIWDLRSMATDKPE--PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      .+| |+|||+.+.+.....  +.........-..+.|.++.++  +.|...+|+|..++
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L--VIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL--VIGWGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE--EEecCCeEEEEEEe
Confidence            776 899999875421100  0111112223456788876543  34666789999887

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.74  E-value=2.4e-05  Score=71.51  Aligned_cols=236  Identities=11%  Similarity=0.060  Sum_probs=134.7

Q ss_pred             EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC---CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL---GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      ++.+.  +|++||.-. |..|.|-...++-  ...+...+-..   -.-..++|+||+ .+|+.+...|+|+++|+....
T Consensus         3 ~~~~~--~Gk~lAi~q-d~~iEiRsa~Ddf--~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~   76 (282)
T PF15492_consen    3 LALSS--DGKLLAILQ-DQCIEIRSAKDDF--SSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSE   76 (282)
T ss_pred             eeecC--CCcEEEEEe-ccEEEEEeccCCc--hheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccce
Confidence            45556  888777754 5677777665432  12222222222   235689999999 999999999999999998754


Q ss_pred             EEEeec-------CCCceeEEEecCCC-----CCEEEEEECCCeEEEEECCCC-----ccceeEe---ccCCCeEEEEEe
Q 009380          317 FDLVYS-------SEYAVFSLSQQPNN-----VNTLYFGEGQGGLNIWDVRSR-----KSATEWL---LHEARINTIDFN  376 (536)
Q Consensus       317 ~~~~~~-------~~~~i~~l~~~~~~-----~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~---~h~~~i~~i~~~  376 (536)
                      +..+-.       ....|..+.|.+..     ...|++-...|.++-|-+..+     +..+.+.   .+...|+++.++
T Consensus        77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence            433221       23567777775432     235777778888887775322     2233333   246789999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC-e-EEEEeCCCc------EEEEeCCCCCc
Q 009380          377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS-S-LATTSFDDT------IGIWSGVNFEN  448 (536)
Q Consensus       377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~-l~t~s~dg~------I~iwd~~~~~~  448 (536)
                      |.. ++|+.|+....      ..+.        .......+++-..-.+.. + .++...|+.      ..+|.+-+   
T Consensus       157 p~h-~LLlVgG~~~~------~~~~--------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~---  218 (282)
T PF15492_consen  157 PKH-RLLLVGGCEQN------QDGM--------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS---  218 (282)
T ss_pred             CCC-CEEEEeccCCC------CCcc--------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc---
Confidence            976 56666654322      0100        001111222211111111 1 112222221      12232211   


Q ss_pred             ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380          449 TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      ...+....+..  -.++++..||||..|++...+|.|.+|++.+-++...+..
T Consensus       219 ~~~fs~~~~~~--d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  219 FKFFSRQGQEQ--DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             eeeeeccccCC--CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            11111111122  2345577899999999999999999999999877776654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.65  E-value=1.8e-05  Score=85.04  Aligned_cols=237  Identities=17%  Similarity=0.123  Sum_probs=152.4

Q ss_pred             CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC----CC
Q 009380          282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR----SR  357 (536)
Q Consensus       282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~----~~  357 (536)
                      ...|.++.|..+. +.++.+..+|.|.+-|.++......-..+..|.+++|+|+. ..++..+..++|.+-+-.    ..
T Consensus        68 d~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   68 DDEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CcceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhc
Confidence            3679999999998 88999999999999999998888888888999999999998 788888888787765421    11


Q ss_pred             ccc-------------------eeEecc---------------------CCCeEEEEEecCCCCEEEEEe----CC-CcE
Q 009380          358 KSA-------------------TEWLLH---------------------EARINTIDFNPRNPNIMATSS----TD-GTA  392 (536)
Q Consensus       358 ~~~-------------------~~~~~h---------------------~~~i~~i~~~p~~~~~l~s~s----~d-g~i  392 (536)
                      +.+                   ..|.+.                     .+.=++|+|--|| .+||+..    .+ +.|
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESETGTRKI  224 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEeccCCceeE
Confidence            111                   112111                     1112358999888 5777732    23 789


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe---CCCcEEEEeCCCCCcceEE--eccCCCCceeeeeEE
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFENTSMI--HHNNQTGRWISSFRA  467 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s---~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~  467 (536)
                      +|||-. +.    .-.......+.-.+++|-|.|..+++..   .|+.|.+|.-+... ...+  +.......   +-.+
T Consensus       225 rV~drE-g~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~-hg~f~l~~p~de~~---ve~L  295 (1265)
T KOG1920|consen  225 RVYDRE-GA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR-HGEFVLPFPLDEKE---VEEL  295 (1265)
T ss_pred             EEeccc-ch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc-ccccccCCcccccc---hhee
Confidence            999976 21    1111112233446799999999988864   45679999854322 2212  11111111   3347


Q ss_pred             EEcCCCCEEEE---EcCCCcEEEEcCCccccc--eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          468 IWGWDDSCVFI---GNMTRTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       468 ~~s~~g~~l~~---gs~dg~I~v~d~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      +|+.++..|++   ......|++|-+.+..--  +.+.....    .-+.|+|.....|..-..+|...+++
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~----~~~~W~p~~~~~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQK----ALLMWDPVTEKTLHVLRESGQRLVRD  363 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccc----ccccccCCCceeEEEEecCCcEEEEE
Confidence            89999999888   444455999987664211  11111111    12678887666666666777766655

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=5e-08  Score=100.25  Aligned_cols=218  Identities=13%  Similarity=0.124  Sum_probs=152.6

Q ss_pred             CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCC-eE
Q 009380          272 DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQG-GL  349 (536)
Q Consensus       272 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg-~i  349 (536)
                      ......|..|....+|++|+-.. +.|+.|+..|.|+++++.+|.... ...|..+|+-+.-+.+|...|.+++... -.
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            34556778899999999999987 999999999999999999986554 4468899999999999855555555554 56


Q ss_pred             EEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380          350 NIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS  428 (536)
Q Consensus       350 ~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~  428 (536)
                      .+|++.. +...+.|..    -.++.|+..- +.-+.|..-....+||+.++...........+....-+.+.|+|+..+
T Consensus      1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            7899864 444555542    3567888653 333344444568999999975222112222334455588999998887


Q ss_pred             EEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeee
Q 009380          429 LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIP  508 (536)
Q Consensus       429 l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~  508 (536)
                      |+-   ||  .+||++..+.++.+......      ....|+|.|.-+++-+     .|||+.+.+.++.++.-    -.
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~------~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L----dq 1304 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDY------GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL----DQ 1304 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhhhhheec------ccccccCCCceEEeec-----hhhhhHHHHHHhcCccc----cc
Confidence            753   44  48999988777766432211      1255899999888865     59999999888777642    23


Q ss_pred             eeEeecC
Q 009380          509 CRFHAHP  515 (536)
Q Consensus       509 ~~~~~~p  515 (536)
                      |.+.|+.
T Consensus      1305 c~VtFNs 1311 (1516)
T KOG1832|consen 1305 CAVTFNS 1311 (1516)
T ss_pred             eEEEecc
Confidence            4566665

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=3.1e-06  Score=80.24  Aligned_cols=253  Identities=11%  Similarity=0.060  Sum_probs=146.1

Q ss_pred             ccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEE
Q 009380          221 SLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFT  300 (536)
Q Consensus       221 ~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  300 (536)
                      ..++.+..+...|...|..++|+|... .++..++-+..|.|.|+.+    ...+..+..| ..+++++|.-+..++|+.
T Consensus       180 ~~~fkssq~lp~~g~~IrdlafSp~~~-GLl~~asl~nkiki~dlet----~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  180 SHDFKSSQILPGEGSFIRDLAFSPFNE-GLLGLASLGNKIKIMDLET----SCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             cCCcchhhcccccchhhhhhccCcccc-ceeeeeccCceEEEEeccc----ceeeeheecc-CCceeeeeccCCcceeEE
Confidence            345566667788888999999999522 3788889999999999998    6677777777 789999999988889999


Q ss_pred             EECCCeEEEEECCCCeEE--Eeec--CCCceeEEEecC------CCCCEEEEEECCCeEEEEECCC--CccceeEe-ccC
Q 009380          301 SCYDGLIRLMDAEKEVFD--LVYS--SEYAVFSLSQQP------NNVNTLYFGEGQGGLNIWDVRS--RKSATEWL-LHE  367 (536)
Q Consensus       301 ~s~dg~I~vwd~~~~~~~--~~~~--~~~~i~~l~~~~------~~~~~l~~g~~dg~i~i~d~~~--~~~~~~~~-~h~  367 (536)
                      |...|.|.|||++...-.  ....  ...+|..++.-+      .+ .+++....  .+..|.+..  +.....+. +..
T Consensus       254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g-glLv~~lt--~l~f~ei~~s~~~~p~vlele~p  330 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG-GLLVFALT--VLQFYEIVFSAECLPCVLELEPP  330 (463)
T ss_pred             eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc-ceEEeeeh--hhhhhhhhccccCCCcccccCCC
Confidence            999999999999864321  1111  123444444332      22 23433333  355666542  22222222 234


Q ss_pred             CCeEEEEEecCCCCEEEEEeCCCc------EEE-EeCCCCCCCCCCcceeecc------cCceeEEEEc-cCCCeEEE-E
Q 009380          368 ARINTIDFNPRNPNIMATSSTDGT------ACI-WDLRSMATDKPEPMKVLSH------KRAVHSAYFS-PSGSSLAT-T  432 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s~dg~------i~i-wdl~~~~~~~~~~~~~~~~------~~~v~~l~~s-p~g~~l~t-~  432 (536)
                      +...++..++...++|++.-.+.+      |-. -|.+.+.   +.+.....+      .-.-..+.+. ++.++|+. +
T Consensus       331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~---pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g  407 (463)
T KOG1645|consen  331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF---PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG  407 (463)
T ss_pred             cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc---eeeeecccccCCcccccccccceeccccccEEEEec
Confidence            556677777755566666544211      111 1111111   000000011      0011112232 34455544 3


Q ss_pred             eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCC
Q 009380          433 SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       433 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~  491 (536)
                      ...+.+.+||..+++.+..+....    .+..++. +.-+ +.||++-. |..++||..+
T Consensus       408 d~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp-~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  408 DSTNELILQDPHSFEVVQTLALSE----PVLDICP-NDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             CCcceeEEeccchhheeeecccCc----ceeecce-eecCCcchhhhee-cceEEEEecC
Confidence            455679999999999888885542    2333222 2223 34555544 5578887654

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=2.3e-06  Score=87.84  Aligned_cols=189  Identities=13%  Similarity=0.162  Sum_probs=135.6

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE  362 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~  362 (536)
                      ..++|++++.   ..|+-|+.+|.|++++..... ...+.|...      ...| .++++|+.||.|.|..+-+.+...+
T Consensus        40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~G-ey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVHD---KFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEG-EYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhhc---ceeeeccccceEEEEecCCcc-ccccccccc------ccCC-ceEEEecCCCcEEEeeccCCcccee
Confidence            4566777764   789999999999999987654 344444332      4445 8999999999999999988887776


Q ss_pred             EeccCCCeEEEEEecC----CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380          363 WLLHEARINTIDFNPR----NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p~----~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                      +. ...++.+|+++|+    ....+++|+.-| +.++.-+-....  .........++|.+++|.  |++||=++.+| |
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v  181 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V  181 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence            65 6788999999997    235789999888 888765543321  222445678899999995  88898888877 9


Q ss_pred             EEEeCCCCCcceEEeccCCCCc-eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          439 GIWSGVNFENTSMIHHNNQTGR-WISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      +|||+...+.+..+....+..+ ........|.++. .|++|-.| +|.|..+.
T Consensus       182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK  233 (846)
T ss_pred             EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence            9999988887777654332222 1222336677654 56666544 68888776

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=4.3e-07  Score=86.94  Aligned_cols=214  Identities=13%  Similarity=0.078  Sum_probs=144.0

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecCCCCCEEEEEEC-CCeEEEEECC
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVR  355 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~  355 (536)
                      |...|+.+.....  +++.+++.||.++.|--..-..    .....|-..|.+++.+.++ .++.+.+. |..++++|+.
T Consensus         8 hrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence            7777887766554  7999999999999998654221    2233567889999999988 77888777 9999999998


Q ss_pred             CCccceeEeccCCCeEEEEEecCCC----CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE
Q 009380          356 SRKSATEWLLHEARINTIDFNPRNP----NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT  431 (536)
Q Consensus       356 ~~~~~~~~~~h~~~i~~i~~~p~~~----~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t  431 (536)
                      +-..+..+..-. .-..++|....+    .+.++.-.+|.+.|+|-+...  .+......-|..+|..+.+++.+..+++
T Consensus        85 n~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~--~q~~~fkklH~sPV~~i~y~qa~Ds~vS  161 (558)
T KOG0882|consen   85 NFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF--CQDGYFKKLHFSPVKKIRYNQAGDSAVS  161 (558)
T ss_pred             ccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc--CccceecccccCceEEEEeeccccceee
Confidence            766554433211 111223322111    123333457999999987643  1223333369999999999999999999


Q ss_pred             EeCCCcEEEEeCCC-CCcc-----eEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          432 TSFDDTIGIWSGVN-FENT-----SMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       432 ~s~dg~I~iwd~~~-~~~~-----~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      ....|-|..|.... .+..     ..+.+....    .......++.|+|+|..+.+-+.|..|+++...+++.++.+.
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD  240 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID  240 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence            99999999999762 1111     111111100    000112236789999999999999999999999987755443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.59  E-value=0.00011  Score=69.35  Aligned_cols=209  Identities=16%  Similarity=0.144  Sum_probs=130.4

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCc-EEEEECCCCCCCCCceEEeccCCCC--EEEEEEecCCCCEEEEEEC-----CC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGN-ITFWNLDSQQDEDNGIYLFRTHLGP--ISGIVTQQYCLSKIFTSCY-----DG  305 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~-v~iwd~~~~~~~~~~~~~~~~h~~~--V~~l~~~~~~~~~l~s~s~-----dg  305 (536)
                      +.+...++.+|. ....++.+-.-|+ ..+||..++    .....+....+.  --.-.|+++| .+|++.-.     .|
T Consensus         4 P~RgH~~a~~p~-~~~avafaRRPG~~~~v~D~~~g----~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G   77 (305)
T PF07433_consen    4 PARGHGVAAHPT-RPEAVAFARRPGTFALVFDCRTG----QLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRG   77 (305)
T ss_pred             CccccceeeCCC-CCeEEEEEeCCCcEEEEEEcCCC----ceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcE
Confidence            345566777774 4456666666654 567888763    333332221111  1125799999 88888644     58


Q ss_pred             eEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEEC------------------CCeEEEEECCCCccceeEe-
Q 009380          306 LIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEG------------------QGGLNIWDVRSRKSATEWL-  364 (536)
Q Consensus       306 ~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~------------------dg~i~i~d~~~~~~~~~~~-  364 (536)
                      .|-|||...+  +...+..+.-..-.+.+.|++ ..|+++..                  +-+|...|..+|+.+.... 
T Consensus        78 ~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   78 VIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             EEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            9999999933  222333444556677889988 45555421                  2356777888888877744 


Q ss_pred             ---ccCCCeEEEEEecCCCCEEEEEeCCC-------cEEEEeCCCCCCCCCCcce-----eecccCceeEEEEccCCCeE
Q 009380          365 ---LHEARINTIDFNPRNPNIMATSSTDG-------TACIWDLRSMATDKPEPMK-----VLSHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       365 ---~h~~~i~~i~~~p~~~~~l~s~s~dg-------~i~iwdl~~~~~~~~~~~~-----~~~~~~~v~~l~~sp~g~~l  429 (536)
                         .|.-.|..+++.++| ..++..-..|       .|.+++....    ...+.     .......+-+|++++++.++
T Consensus       157 p~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~~----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i  231 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGGA----LRLLPAPEEQWRRLNGYIGSIAADRDGRLI  231 (305)
T ss_pred             CccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCCc----ceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence               377889999999987 3333332222       2344443321    01111     12345788999999999877


Q ss_pred             EEEe-CCCcEEEEeCCCCCcceEEec
Q 009380          430 ATTS-FDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       430 ~t~s-~dg~I~iwd~~~~~~~~~~~~  454 (536)
                      +++| ..+.+.+||..++..+.....
T Consensus       232 a~tsPrGg~~~~~d~~tg~~~~~~~l  257 (305)
T PF07433_consen  232 AVTSPRGGRVAVWDAATGRLLGSVPL  257 (305)
T ss_pred             EEECCCCCEEEEEECCCCCEeecccc
Confidence            6655 677899999999887766543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.58  E-value=4.2e-05  Score=72.04  Aligned_cols=229  Identities=13%  Similarity=0.127  Sum_probs=140.0

Q ss_pred             EEEEEecCCCCEEEEEECCCe-EEEEECCCCeEEEeecCC-C--ceeEEEecCCCCCEEEEEEC-----CCeEEEEECC-
Q 009380          286 SGIVTQQYCLSKIFTSCYDGL-IRLMDAEKEVFDLVYSSE-Y--AVFSLSQQPNNVNTLYFGEG-----QGGLNIWDVR-  355 (536)
Q Consensus       286 ~~l~~~~~~~~~l~s~s~dg~-I~vwd~~~~~~~~~~~~~-~--~i~~l~~~~~~~~~l~~g~~-----dg~i~i~d~~-  355 (536)
                      ..++.+|..+..++.+-.-|+ ..+||..++......... +  ---.-+|++++ ++|++.-.     .|.|-|||.. 
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG-RLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC-CEEEEeccccCCCcEEEEEEECcC
Confidence            467788866567777766654 678999988765444221 1  11246799998 78887543     4889999999 


Q ss_pred             CCccceeEeccCCCeEEEEEecCCCCEEEEEe------------------CCCcEEEEeCCCCCCCCCCcceeecccCce
Q 009380          356 SRKSATEWLLHEARINTIDFNPRNPNIMATSS------------------TDGTACIWDLRSMATDKPEPMKVLSHKRAV  417 (536)
Q Consensus       356 ~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s------------------~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v  417 (536)
                      +.+.+.+|..|.-.-..+.+.|++. .|+.+.                  .+..+...|..+++-.....+.-..|..+|
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi  165 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI  165 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence            5566788887777778899999884 444442                  122344455555431111111113478899


Q ss_pred             eEEEEccCCCeEEEEeCCCc-------EEEEeCCCCCcceEEecc----CCCCceeeeeEEEEcCCCCEEEEEcCC-CcE
Q 009380          418 HSAYFSPSGSSLATTSFDDT-------IGIWSGVNFENTSMIHHN----NQTGRWISSFRAIWGWDDSCVFIGNMT-RTV  485 (536)
Q Consensus       418 ~~l~~sp~g~~l~t~s~dg~-------I~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I  485 (536)
                      ..+++.++|..++..-..|.       |.+++..  +....+...    ......+-+  ++++.++.++++.+-- +.+
T Consensus       166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gS--Ia~~~~g~~ia~tsPrGg~~  241 (305)
T PF07433_consen  166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGS--IAADRDGRLIAVTSPRGGRV  241 (305)
T ss_pred             eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEE--EEEeCCCCEEEEECCCCCEE
Confidence            99999999986665544432       4444432  222222211    111222333  7788999887666654 779


Q ss_pred             EEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380          486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG  526 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~  526 (536)
                      .+||..+++.+....-..    .|.++..+  +.++++.+.
T Consensus       242 ~~~d~~tg~~~~~~~l~D----~cGva~~~--~~f~~ssG~  276 (305)
T PF07433_consen  242 AVWDAATGRLLGSVPLPD----ACGVAPTD--DGFLVSSGQ  276 (305)
T ss_pred             EEEECCCCCEeeccccCc----eeeeeecC--CceEEeCCC
Confidence            999999998876655322    23445443  245655554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.56  E-value=2.2e-08  Score=99.70  Aligned_cols=199  Identities=19%  Similarity=0.297  Sum_probs=136.7

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----CCCeEEEEE
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----YDGLIRLMD  311 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----~dg~I~vwd  311 (536)
                      -+-|+++.-..+..++++|..+|.|.+-.+....  ........+|..+.++++|++-..+.|+.|-    .|..+.|||
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h--dSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPH--DSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcc--cccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3667776654355789999999999999887643  2234455678899999999997646666663    367899999


Q ss_pred             CCCC--eEE---Eeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          312 AEKE--VFD---LVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       312 ~~~~--~~~---~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      +.++  .+.   .+.. ......++||..+. .++.+|.....+.++|+|..... ...-.+..+..+...|-.++++++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceec
Confidence            9876  111   1112 33556689999665 78888988889999999843221 111234566778888866678887


Q ss_pred             EeCCCcEEEEe-CCCCCCCCCCcceeeccc-----CceeEEEEcc--CCCeEEEEe-CCCcEEEEeCC
Q 009380          386 SSTDGTACIWD-LRSMATDKPEPMKVLSHK-----RAVHSAYFSP--SGSSLATTS-FDDTIGIWSGV  444 (536)
Q Consensus       386 ~s~dg~i~iwd-l~~~~~~~~~~~~~~~~~-----~~v~~l~~sp--~g~~l~t~s-~dg~I~iwd~~  444 (536)
                      -. ||.|.+|| .++.+    .++....|.     ..+..++|+|  .|. +++.. ..++|++||+.
T Consensus       214 ~~-dg~iAiwD~~rnie----npl~~i~~~~N~~~~~l~~~aycPtrtgl-la~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  214 NS-DGDIAIWDTYRNIE----NPLQIILRNENKKPKQLFALAYCPTRTGL-LAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cc-cCceeeccchhhhc----cHHHHHhhCCCCcccceeeEEeccCCcch-hhhhccCcceEEEeccc
Confidence            76 99999999 55543    222222222     2489999999  444 44444 56789999975

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.52  E-value=0.00028  Score=63.58  Aligned_cols=118  Identities=17%  Similarity=0.119  Sum_probs=80.2

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      .....+|-+-+.-   -|++++.|.+.|.+++.+..+    +.....+..-..-=......+++ .+++.++.|++.+..
T Consensus        49 ~ilg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~t----Gs~~w~f~~~~~vk~~a~~d~~~-glIycgshd~~~yal  120 (354)
T KOG4649|consen   49 AILGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKT----GSQIWNFVILETVKVRAQCDFDG-GLIYCGSHDGNFYAL  120 (354)
T ss_pred             hhhCceeeeeeEE---ECCEEEEEEccCcEEEEEecc----hhheeeeeehhhhccceEEcCCC-ceEEEecCCCcEEEe
Confidence            3345566665554   357899999999999999998    55555555432222233455666 899999999999999


Q ss_pred             ECCCCeEEEeecCCCcee-EEEecCCCCCEEEEEECCCeEEEEECCCC
Q 009380          311 DAEKEVFDLVYSSEYAVF-SLSQQPNNVNTLYFGEGQGGLNIWDVRSR  357 (536)
Q Consensus       311 d~~~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~g~~dg~i~i~d~~~~  357 (536)
                      |..+..+.......+.+. +-+..+.. ..|+++...|.|.-......
T Consensus       121 D~~~~~cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  121 DPKTYGCVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             cccccceEEecccCCceeccceecCCC-ceEEEEeccceEEEEccCCC
Confidence            999887766555444433 33444433 56777888888777766554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.51  E-value=1.7e-06  Score=89.75  Aligned_cols=150  Identities=19%  Similarity=0.256  Sum_probs=118.7

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC---------CCe
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY---------DGL  306 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~---------dg~  306 (536)
                      .|+-++.    +++++++|...|+|.+-|..+    .+.++++..|++.|.++...  | ++|++|++         |..
T Consensus       179 ~v~imR~----Nnr~lf~G~t~G~V~LrD~~s----~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~F  247 (1118)
T KOG1275|consen  179 GVTIMRY----NNRNLFCGDTRGTVFLRDPNS----FETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPF  247 (1118)
T ss_pred             ceEEEEe----cCcEEEeecccceEEeecCCc----Cceeeeeeccccceeeeecc--C-CeEEEeecccccccccccch
Confidence            4666665    668999999999999999998    88999999999999876664  5 89999986         556


Q ss_pred             EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC---CCc-cceeEeccCCCeEEEEEecCCCCE
Q 009380          307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR---SRK-SATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~---~~~-~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      |+|||++.-....-........-+.|+|.-...+++.+..|...+.|..   ... .+..+......+..+++++.+ +.
T Consensus       248 vkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~a  326 (1118)
T KOG1275|consen  248 VKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DA  326 (1118)
T ss_pred             hhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC-ce
Confidence            8999998765544444444446678899887889999999999999943   331 134444556679999999976 79


Q ss_pred             EEEEeCCCcEEEEeC
Q 009380          383 MATSSTDGTACIWDL  397 (536)
Q Consensus       383 l~s~s~dg~i~iwdl  397 (536)
                      ++.|..+|.|.+|--
T Consensus       327 lafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  327 LAFGDHEGHVNLWAD  341 (1118)
T ss_pred             EEEecccCcEeeecC
Confidence            999999999999973

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.51  E-value=7.6e-05  Score=74.95  Aligned_cols=115  Identities=11%  Similarity=0.113  Sum_probs=85.9

Q ss_pred             CCCceeEEEecCCCCCEEEEEE----CCCe----EEEEECCCCcc--ceeE-eccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          323 SEYAVFSLSQQPNNVNTLYFGE----GQGG----LNIWDVRSRKS--ATEW-LLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       323 ~~~~i~~l~~~~~~~~~l~~g~----~dg~----i~i~d~~~~~~--~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      .+....++.|+...++.+.+..    .+|.    -.+|++..++.  +... -.....|.+++++|+. ..|+.|+.||.
T Consensus       204 TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgS  282 (545)
T PF11768_consen  204 TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGS  282 (545)
T ss_pred             ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCe
Confidence            4556678888876667777643    2343    35666655433  1111 1577899999999977 68999999999


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      |.+||....      ......+.-..+.++|+|+|..|++|+.-|.+.+||+.
T Consensus       283 iiLyD~~~~------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  283 IILYDTTRG------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EEEEEcCCC------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            999998773      23333556678999999999999999999999999975

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.50  E-value=3.7e-05  Score=78.98  Aligned_cols=189  Identities=13%  Similarity=0.090  Sum_probs=112.5

Q ss_pred             EecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE------------------------
Q 009380          290 TQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE------------------------  344 (536)
Q Consensus       290 ~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~------------------------  344 (536)
                      +.|+| ..+ .+.-+.+.+.+.|.++.+......-......+++++++ .++++.+                        
T Consensus       200 lpnDG-k~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDG-KDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCC-CEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            34455 333 23334566777787775554443333444556666666 4444443                        


Q ss_pred             ----------------CCCeEEEEECCC----CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC-
Q 009380          345 ----------------GQGGLNIWDVRS----RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD-  403 (536)
Q Consensus       345 ----------------~dg~i~i~d~~~----~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~-  403 (536)
                                      .++.|.++|.++    +..+..+-.-......|.++|||.++++++..+.+|.|.|+.+.+.. 
T Consensus       278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence                            124578888777    32232322345667889999999877788888999999999885410 


Q ss_pred             ------CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC----------CCcceEEeccCCCCceeeeeEE
Q 009380          404 ------KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN----------FENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       404 ------~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                            ...+.....-.......+|+++|+.+.+...|..|..||+..          ...+..+....+.++......-
T Consensus       358 ~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~  437 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE  437 (635)
T ss_pred             hccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence                  001122222344556789999999888888999999999875          2222223222333333222212


Q ss_pred             EEcCCCCEEEEEc
Q 009380          468 IWGWDDSCVFIGN  480 (536)
Q Consensus       468 ~~s~~g~~l~~gs  480 (536)
                      .-.++|++|++.+
T Consensus       438 t~~~dgk~l~~~n  450 (635)
T PRK02888        438 TKEADGKWLVSLN  450 (635)
T ss_pred             cCCCCCCEEEEcc
Confidence            2357888888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=3.9e-05  Score=79.69  Aligned_cols=200  Identities=12%  Similarity=0.093  Sum_probs=135.6

Q ss_pred             EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe-----EEEEECCCC
Q 009380          241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL-----IRLMDAEKE  315 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~-----I~vwd~~~~  315 (536)
                      +|++  .+..++.|+.+|.|.+++-.     ...++.|+.+...|...-|.-++.++|++.+.|+.     |++|+++.-
T Consensus        30 c~~s--~~~~vvigt~~G~V~~Ln~s-----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~  102 (933)
T KOG2114|consen   30 CCSS--STGSVVIGTADGRVVILNSS-----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV  102 (933)
T ss_pred             EEcC--CCceEEEeeccccEEEeccc-----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence            3455  77899999999999888765     46667888887774333444444378888887754     899998742


Q ss_pred             ------eEE---Eeec-----CCCceeEEEecCCCCCEEEEEECCCeEEEEEC--CCCcccee--EeccCCCeEEEEEec
Q 009380          316 ------VFD---LVYS-----SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV--RSRKSATE--WLLHEARINTIDFNP  377 (536)
Q Consensus       316 ------~~~---~~~~-----~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~--~~~~~~~~--~~~h~~~i~~i~~~p  377 (536)
                            .+.   .++.     ...++.+++.+.+- ..+++|-.+|.|..+.=  ...+..+.  ......+|+.+.+..
T Consensus       103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~  181 (933)
T KOG2114|consen  103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS  181 (933)
T ss_pred             CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence                  122   2333     24678899999886 89999999999998842  11111111  123467899999998


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      ++...+.++. -..|.+|.+.. +  .+.......|..+++|..|++....|++++. ..|.+||.....+...+.
T Consensus       182 d~~s~lFv~T-t~~V~~y~l~g-r--~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  182 DGKSVLFVAT-TEQVMLYSLSG-R--TPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CCceeEEEEe-cceeEEEEecC-C--CcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            8865333333 35799999884 2  1223334578889999999986554666554 459999987666555553

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.49  E-value=5.5e-05  Score=81.48  Aligned_cols=202  Identities=12%  Similarity=0.174  Sum_probs=134.7

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      .+.|.++.|.-  +..-|+.+...|.|.+-|..+.     .......-...|.+++|+||. ..++..+.++++.+.+-.
T Consensus        68 d~~i~s~~fl~--d~~~i~v~~~~G~iilvd~et~-----~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLA--DTNSICVITALGDIILVDPETL-----ELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKD  139 (1265)
T ss_pred             CcceEEEEEec--ccceEEEEecCCcEEEEccccc-----ceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecc
Confidence            47899999999  8999999999999999987752     233333346789999999998 999988888888775431


Q ss_pred             ----C-----------CeE---------EEeec---------------------CCCceeEEEecCCCCCEEEEE-----
Q 009380          314 ----K-----------EVF---------DLVYS---------------------SEYAVFSLSQQPNNVNTLYFG-----  343 (536)
Q Consensus       314 ----~-----------~~~---------~~~~~---------------------~~~~i~~l~~~~~~~~~l~~g-----  343 (536)
                          .           ++.         ..+.+                     ....=++|+|--+| .++++.     
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~fAVs~~~~~  218 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EYFAVSFVESE  218 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cEEEEEEEecc
Confidence                0           000         01110                     11122458998888 677773     


Q ss_pred             ECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe---CCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380          344 EGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS---TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA  420 (536)
Q Consensus       344 ~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l  420 (536)
                      .....|++||.+ |..-..-......-.+++|-|.| .++++-.   .|+.|.+|.-+.... ....+........|..+
T Consensus       219 ~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L  295 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEEL  295 (1265)
T ss_pred             CCceeEEEeccc-chhhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchhee
Confidence            233789999977 44322222333445689999977 5666643   356799998554321 12223333334459999


Q ss_pred             EEccCCCeEEE---EeCCCcEEEEeCCCCC
Q 009380          421 YFSPSGSSLAT---TSFDDTIGIWSGVNFE  447 (536)
Q Consensus       421 ~~sp~g~~l~t---~s~dg~I~iwd~~~~~  447 (536)
                      +|+.++..|++   ......|++|-+.+..
T Consensus       296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  296 AWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             eecCCCCceeeeecccccceEEEEEecCeE
Confidence            99999998887   4445559999887654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.45  E-value=4.7e-07  Score=58.13  Aligned_cols=38  Identities=37%  Similarity=0.709  Sum_probs=35.2

Q ss_pred             ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380          358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWD  396 (536)
Q Consensus       358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd  396 (536)
                      +++.++.+|...|++|+|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            5678899999999999999986 7999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.45  E-value=5.3e-07  Score=57.89  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=35.7

Q ss_pred             CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      +++..+.+|.+.|.+|+|+|++ .+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence            4578899999999999999998 9999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.38  E-value=0.0002  Score=69.59  Aligned_cols=287  Identities=13%  Similarity=0.025  Sum_probs=142.5

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCC---ceEEEEEEecCCccEEEEEeCCCc
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPG---RITQMKFLPCSDVRMVVAGSKLGN  259 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~---~I~~v~~~p~~~~~~l~tg~~dg~  259 (536)
                      ..-+..-+|.+||+.|..         .+..+|.-.||-+++....+.+...+   ......++|  +.+.|+--.....
T Consensus        35 ~~YF~~~~ft~dG~kllF---------~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~--~~~~~~Yv~~~~~  103 (386)
T PF14583_consen   35 RLYFYQNCFTDDGRKLLF---------ASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP--DDRALYYVKNGRS  103 (386)
T ss_dssp             ---TTS--B-TTS-EEEE---------EE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T--TSSEEEEEETTTE
T ss_pred             ceeecCCCcCCCCCEEEE---------EeccCCCcceEEEEcccCEEEECccCCCCCccceEEec--CCCeEEEEECCCe
Confidence            345555577888876663         34566777777777766666665543   244567778  6677766555568


Q ss_pred             EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC-CEEEEEEC----------------------CCeEEEEECCCCe
Q 009380          260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL-SKIFTSCY----------------------DGLIRLMDAEKEV  316 (536)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~----------------------dg~I~vwd~~~~~  316 (536)
                      |.-.|+.+    .+....+......+-...|..+.. .+++-.-.                      ...|.-.|+.+++
T Consensus       104 l~~vdL~T----~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~  179 (386)
T PF14583_consen  104 LRRVDLDT----LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE  179 (386)
T ss_dssp             EEEEETTT------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--
T ss_pred             EEEEECCc----CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc
Confidence            88888887    333344444555555566653321 34332211                      2346667888898


Q ss_pred             EEEeecCCCceeEEEecCCCCCEEEEEEC---CC-eEEEEECCC-CccceeEecc--CCCeEEEEEecCCCCEEEEEe--
Q 009380          317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEG---QG-GLNIWDVRS-RKSATEWLLH--EARINTIDFNPRNPNIMATSS--  387 (536)
Q Consensus       317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~---dg-~i~i~d~~~-~~~~~~~~~h--~~~i~~i~~~p~~~~~l~s~s--  387 (536)
                      ...++....-+..+.|+|.++.+|+.|-.   +. .-+||-+++ +.....+..+  ...+..=-|.|+|..+...+.  
T Consensus       180 ~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~  259 (386)
T PF14583_consen  180 RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP  259 (386)
T ss_dssp             EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEET
T ss_pred             eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecC
Confidence            88888888889999999999888888654   22 125565543 2223333222  233444568888866555433  


Q ss_pred             --CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC----------------cEEEEeCCCCCcc
Q 009380          388 --TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD----------------TIGIWSGVNFENT  449 (536)
Q Consensus       388 --~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg----------------~I~iwd~~~~~~~  449 (536)
                        .+..|.-+|+.+++.      ...........+..+++|++++-=+.|.                .|+++++..+...
T Consensus       260 ~~~~~~i~~~d~~t~~~------~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~  333 (386)
T PF14583_consen  260 GGQDFWIAGYDPDTGER------RRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR  333 (386)
T ss_dssp             TT--EEEEEE-TTT--E------EEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred             CCCceEEEeeCCCCCCc------eEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence              244577778877531      1112223455677788998776544442                4667777665544


Q ss_pred             eEEeccC-----CCCceeeeeEEEEcCCCCE-EEEEcCCCcEEEEcC
Q 009380          450 SMIHHNN-----QTGRWISSFRAIWGWDDSC-VFIGNMTRTVEVISP  490 (536)
Q Consensus       450 ~~~~~~~-----~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I~v~d~  490 (536)
                      ....|..     .....+.--.+.|+|||++ |+.+++.|...||-+
T Consensus       334 ~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  334 KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            3333321     0001111233779999998 556667787777643

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.33  E-value=0.00085  Score=60.54  Aligned_cols=143  Identities=14%  Similarity=0.079  Sum_probs=92.4

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA  326 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~  326 (536)
                      ...+++.|+..+.+.--|..++    ..+..- --...|.+-+.- -| ++++.|++.|.+++.+..+|.....+...+.
T Consensus        22 skT~v~igSHs~~~~avd~~sG----~~~We~-ilg~RiE~sa~v-vg-dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSG----NLIWEA-ILGVRIECSAIV-VG-DFVVLGCYSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             CceEEEEecCCceEEEecCCCC----cEEeeh-hhCceeeeeeEE-EC-CEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence            3467888888888888887763    222211 112334333333 34 7899999999999999999966555544444


Q ss_pred             eeE-EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009380          327 VFS-LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLR  398 (536)
Q Consensus       327 i~~-l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~  398 (536)
                      |.+ ....+++ .+++.|+.|++.+..|.++..++...+.....-.+-+..| +..-|..+...|.+---...
T Consensus        95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~-g~~sly~a~t~G~vlavt~~  165 (354)
T KOG4649|consen   95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP-GDGSLYAAITAGAVLAVTKN  165 (354)
T ss_pred             hccceEEcCCC-ceEEEecCCCcEEEecccccceEEecccCCceeccceecC-CCceEEEEeccceEEEEccC
Confidence            433 2334555 7999999999999999999999988774444334445555 22345555555655444433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.32  E-value=0.00011  Score=76.46  Aligned_cols=198  Identities=10%  Similarity=0.112  Sum_probs=129.2

Q ss_pred             cccccceEEecccccCccccccccCCc-eEEEEEEecCCccEEEEEeCCC-----cEEEEECCCCCCC--CCce--EEec
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIMPGR-ITQMKFLPCSDVRMVVAGSKLG-----NITFWNLDSQQDE--DNGI--YLFR  279 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~-I~~v~~~p~~~~~~l~tg~~dg-----~v~iwd~~~~~~~--~~~~--~~~~  279 (536)
                      -+..+|.|.+.+-......-.+.++.. |..+....  ...+|++-+.|+     .|+||+++.....  ..++  +...
T Consensus        40 igt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~  117 (933)
T KOG2114|consen   40 IGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIF  117 (933)
T ss_pred             EeeccccEEEecccceeeehheecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeee
Confidence            457788887777655554455677666 44444333  446788776664     4899999864221  2223  1222


Q ss_pred             c-----CCCCEEEEEEecCCCCEEEEEECCCeEEEEECC--C--C-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380          280 T-----HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE--K--E-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGL  349 (536)
Q Consensus       280 ~-----h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~--~--~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i  349 (536)
                      +     ...++.+++.+.+- ..++.|-.+|.|.++.-+  .  + +.........+|+.+.+..++...+++++.. .|
T Consensus       118 ~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~V  195 (933)
T KOG2114|consen  118 TIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-QV  195 (933)
T ss_pred             ccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc-ee
Confidence            2     35678999999986 899999999999888422  1  2 3333445578999999998885545555554 89


Q ss_pred             EEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCce
Q 009380          350 NIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAV  417 (536)
Q Consensus       350 ~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v  417 (536)
                      .+|.+....+ ...+..|...++|..+++.. ..|++++ +..|.+||....    ..+..+. +|....
T Consensus       196 ~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY~sd~~----~~cfaf~~g~kk~~  259 (933)
T KOG2114|consen  196 MLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYFYDSDGR----GPCFAFEVGEKKEM  259 (933)
T ss_pred             EEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEec-CceEEEEcCCCc----ceeeeecCCCeEEE
Confidence            9999984443 44577888999999999855 3344444 356999998753    2444444 454443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.31  E-value=0.00031  Score=73.13  Aligned_cols=263  Identities=11%  Similarity=0.149  Sum_probs=150.1

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC------CEE--EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG------PIS--GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV  320 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~------~V~--~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~  320 (536)
                      ..++.++.++.|.-.|..+    ++.+..+.....      .+.  .+... ++ ..++.++.++.|..+|.++++....
T Consensus        62 g~vy~~~~~g~l~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~-~~V~v~~~~g~v~AlD~~TG~~~W~  135 (488)
T cd00216          62 GDMYFTTSHSALFALDAAT----GKVLWRYDPKLPADRGCCDVVNRGVAYW-DP-RKVFFGTFDGRLVALDAETGKQVWK  135 (488)
T ss_pred             CEEEEeCCCCcEEEEECCC----ChhhceeCCCCCccccccccccCCcEEc-cC-CeEEEecCCCeEEEEECCCCCEeee
Confidence            4566677789999889887    333433322211      110  11111 22 5788888999999999999987766


Q ss_pred             ecCCCc------ee-EEEecCCCCCEEEEEE---------CCCeEEEEECCCCccceeEeccCCC---------------
Q 009380          321 YSSEYA------VF-SLSQQPNNVNTLYFGE---------GQGGLNIWDVRSRKSATEWLLHEAR---------------  369 (536)
Q Consensus       321 ~~~~~~------i~-~l~~~~~~~~~l~~g~---------~dg~i~i~d~~~~~~~~~~~~h~~~---------------  369 (536)
                      +.....      +. +..+.  + .++++++         .+|.|..+|..+|+.+..+......               
T Consensus       136 ~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~  212 (488)
T cd00216         136 FGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG  212 (488)
T ss_pred             ecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence            544332      11 11222  1 3566664         3678999999999987766532110               


Q ss_pred             -----e-EEEEEecCCCCEEEEEeCCC------------------cEEEEeCCCCCCCCCCcceeecccC----ceeEEE
Q 009380          370 -----I-NTIDFNPRNPNIMATSSTDG------------------TACIWDLRSMATDKPEPMKVLSHKR----AVHSAY  421 (536)
Q Consensus       370 -----i-~~i~~~p~~~~~l~s~s~dg------------------~i~iwdl~~~~~~~~~~~~~~~~~~----~v~~l~  421 (536)
                           | ....+.+.+ ..++.++.++                  .|.-+|+.+++..-  ......|..    ......
T Consensus       213 ~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W--~~~~~~~~~~~~~~~s~p~  289 (488)
T cd00216         213 PGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW--FYQTTPHDLWDYDGPNQPS  289 (488)
T ss_pred             CCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE--EeeCCCCCCcccccCCCCe
Confidence                 0 123333333 4666676554                  68888988875211  111111111    001111


Q ss_pred             Ec----cCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE---------------
Q 009380          422 FS----PSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG---------------  479 (536)
Q Consensus       422 ~s----p~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g---------------  479 (536)
                      +.    -+|.   .+++++.+|.+..+|..+++.+........ +       ...+|  ..++++               
T Consensus       290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~-~-------~~~~~--~~vyv~~~~~~~~~~~~~~~~  359 (488)
T cd00216         290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ-P-------MAYDP--GLVYLGAFHIPLGLPPQKKKR  359 (488)
T ss_pred             EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc-c-------cccCC--ceEEEccccccccCcccccCC
Confidence            11    1333   678888999999999999998876543200 0       11222  233332               


Q ss_pred             ---cCCCcEEEEcCCccccceeccCCce--------eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          480 ---NMTRTVEVISPAQRRSVATLQSPYI--------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       480 ---s~dg~I~v~d~~~~~~~~~l~~~~~--------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                         ..+|.|.-+|..+++.+.+......        ......+..   .++.|+.++.||.|+.+|.+
T Consensus       360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~  424 (488)
T cd00216         360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDAT  424 (488)
T ss_pred             CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECC
Confidence               2467888999999988877654310        000011122   34788888999999988753

The alignment model contains an 8-bladed beta-propeller.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.27  E-value=0.00016  Score=73.82  Aligned_cols=156  Identities=18%  Similarity=0.234  Sum_probs=107.5

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      ++..|.--++..  .+++++.|+.-|.|++|+-..+   ........+-.+.+..+..+++. .+++.|+..|.|.++-+
T Consensus        32 ~~~~v~lTc~ds--t~~~l~~GsS~G~lyl~~R~~~---~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql  105 (726)
T KOG3621|consen   32 FPARVKLTCVDA--TEEYLAMGSSAGSVYLYNRHTG---EMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQL  105 (726)
T ss_pred             CcceEEEEEeec--CCceEEEecccceEEEEecCch---hhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehh
Confidence            455666666666  7899999999999999998753   12223333344556667778776 88888999999999988


Q ss_pred             CCCeE---EEe----ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC----ccceeEeccCCCeEEEEEecCCCC
Q 009380          313 EKEVF---DLV----YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR----KSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       313 ~~~~~---~~~----~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      +.+..   ..+    ..|...|++++|++++ ..+++|...|.|....+.+.    ...+.+......|-.+.... + .
T Consensus       106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~-~  182 (726)
T KOG3621|consen  106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-S-Y  182 (726)
T ss_pred             hccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-c-e
Confidence            76422   111    1357899999999998 89999999999999888762    11334444567788888774 2 4


Q ss_pred             EEEEEeCCCcEEEEeCCC
Q 009380          382 IMATSSTDGTACIWDLRS  399 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~  399 (536)
                      +|++... . ..+++...
T Consensus       183 LLVStl~-r-~~Lc~tE~  198 (726)
T KOG3621|consen  183 LLVSTLT-R-CILCQTEA  198 (726)
T ss_pred             ehHhhhh-h-hheeecch
Confidence            4444432 2 34555544

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.27  E-value=0.00028  Score=70.60  Aligned_cols=236  Identities=14%  Similarity=0.167  Sum_probs=131.5

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC---------------------------------------CceE
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED---------------------------------------NGIY  276 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~---------------------------------------~~~~  276 (536)
                      .|+.+.|.+  +..-|++|...|.|.||........+                                       .+..
T Consensus         3 ~v~~vs~a~--~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    3 SVTHVSFAP--ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             -EEEEEEET--TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             eEEEEEecC--CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            588999999  87889999999999998764321100                                       0112


Q ss_pred             EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---------CCCceeEEEecC----CCC---CEE
Q 009380          277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---------SEYAVFSLSQQP----NNV---NTL  340 (536)
Q Consensus       277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---------~~~~i~~l~~~~----~~~---~~l  340 (536)
                      .+....++|++++.+.-|  +++.|..+|.+.|.|++....+....         ....++++.|.-    ++.   -++
T Consensus        81 l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             EE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             heeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            233457899999998664  99999999999999998876554321         234677887751    111   368


Q ss_pred             EEEECCCeEEEEECCC-C--ccc----eeEeccCCCeEEEEEe-cCC--------------------CCEEEEEeCCCcE
Q 009380          341 YFGEGQGGLNIWDVRS-R--KSA----TEWLLHEARINTIDFN-PRN--------------------PNIMATSSTDGTA  392 (536)
Q Consensus       341 ~~g~~dg~i~i~d~~~-~--~~~----~~~~~h~~~i~~i~~~-p~~--------------------~~~l~s~s~dg~i  392 (536)
                      ++|+..|.+.+|.+.- .  ...    .....+.++|..|... .+.                    +.++++++ +..+
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~~i  237 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ESDI  237 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-ccce
Confidence            8999999999998751 1  111    1112456676666532 211                    12455554 6679


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEc-----cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC-CceeeeeE
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFS-----PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT-GRWISSFR  466 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s-----p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~  466 (536)
                      +++.+.+.+    ...+.......+..+.+-     ..+..|++-..+|.|++|.+...+.+..+...... ...+.  .
T Consensus       238 rv~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~--~  311 (395)
T PF08596_consen  238 RVFKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS--S  311 (395)
T ss_dssp             EEE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHT--T
T ss_pred             EEEeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccc--c
Confidence            999988743    233333332333445553     35677888899999999999988887776543211 11111  2


Q ss_pred             EEEcCCCCEEEEEcCC
Q 009380          467 AIWGWDDSCVFIGNMT  482 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~d  482 (536)
                      ..++++|..++-.+..
T Consensus       312 ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  312 SSISRNGDIFYWTGPS  327 (395)
T ss_dssp             -EE-TTS-EEEE-SSS
T ss_pred             cEECCCCCEEEEeCcc
Confidence            4567888877665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=3.4e-05  Score=77.38  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=82.9

Q ss_pred             EEEEEEecCCCCEEEEEE----CCCe----EEEEECCCCeEE----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380          285 ISGIVTQQYCLSKIFTSC----YDGL----IRLMDAEKEVFD----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW  352 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s----~dg~----I~vwd~~~~~~~----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~  352 (536)
                      ..++.|+-..+..+.+..    .+|.    -++|++...+..    ........+.+++++|+. ..++.|+.||.|.+|
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E-~kLvlGC~DgSiiLy  286 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSE-DKLVLGCEDGSIILY  286 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCccc-ceEEEEecCCeEEEE
Confidence            356778776656776653    3443    346666655433    234577899999999998 899999999999999


Q ss_pred             ECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          353 DVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       353 d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      |...+..  .+....-..+.++|||+| .+|++|+..|.+.+||+.-
T Consensus       287 D~~~~~t--~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  287 DTTRGVT--LLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EcCCCee--eeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence            9876632  333345667899999988 6999999999999999865

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.26  E-value=0.00027  Score=70.48  Aligned_cols=272  Identities=12%  Similarity=0.043  Sum_probs=148.0

Q ss_pred             CCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC
Q 009380          192 EGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE  271 (536)
Q Consensus       192 s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~  271 (536)
                      |||++.+... ....+.++-+..+.+.|||+.......+......+....|+|  +|+.|+... ++.|.++++.++.  
T Consensus         1 S~d~~~~l~~-~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~~~--   74 (353)
T PF00930_consen    1 SPDGKFVLFA-TNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLATGQ--   74 (353)
T ss_dssp             -TTSSEEEEE-EEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTTSE--
T ss_pred             CCCCCeEEEE-ECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeec--CCCeeEEEe-cCceEEEECCCCC--
Confidence            4667666643 235566777888899999986644333333367899999999  999998886 5789999876531  


Q ss_pred             CCceEEecc-------C---------CCCEEEEEEecCCCCEEEEEECC-Ce----------------------------
Q 009380          272 DNGIYLFRT-------H---------LGPISGIVTQQYCLSKIFTSCYD-GL----------------------------  306 (536)
Q Consensus       272 ~~~~~~~~~-------h---------~~~V~~l~~~~~~~~~l~s~s~d-g~----------------------------  306 (536)
                       ....+..+       -         -+.-..+-|+|++ ++|+....| ..                            
T Consensus        75 -~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~-~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   75 -ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDS-KYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG  152 (353)
T ss_dssp             -EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTS-SEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred             -eEEeccccceeEEcCccceeccccccccccceEECCCC-CEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence             11111111       0         1123568899999 777765433 22                            


Q ss_pred             -------EEEEECCCCeEEEee------cCCCceeEEEecCCCCCEEEEEEC--C---CeEEEEECCCCccceeEe-ccC
Q 009380          307 -------IRLMDAEKEVFDLVY------SSEYAVFSLSQQPNNVNTLYFGEG--Q---GGLNIWDVRSRKSATEWL-LHE  367 (536)
Q Consensus       307 -------I~vwd~~~~~~~~~~------~~~~~i~~l~~~~~~~~~l~~g~~--d---g~i~i~d~~~~~~~~~~~-~h~  367 (536)
                             +.|+|+.+++...+.      ....-+..+.|.+++ ..|++.-.  +   ..+.++|..++.....+. ...
T Consensus       153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~-~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~  231 (353)
T PF00930_consen  153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG-KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD  231 (353)
T ss_dssp             S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT-EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred             CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC-cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence                   333444444322111      234457788898887 43333322  2   357778888776533332 222


Q ss_pred             CCe---EEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeE-EEEccCCCeEE-EEeCCC----c
Q 009380          368 ARI---NTIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS-AYFSPSGSSLA-TTSFDD----T  437 (536)
Q Consensus       368 ~~i---~~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~-l~~sp~g~~l~-t~s~dg----~  437 (536)
                      ..|   ..+.|. +++..++.....||.-+||-+....   ..+..+....-.|.. +.|+++++.|+ ++..++    .
T Consensus       232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~---~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~  308 (353)
T PF00930_consen  232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG---GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH  308 (353)
T ss_dssp             SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS---SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred             cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc---cceeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence            332   355665 7676777777788875555444321   122333344556644 77888766554 444422    3


Q ss_pred             EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380          438 IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       438 I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                      |..-++..+.....+......  .   ..+.|||++++++...
T Consensus       309 lY~v~~~~~~~~~~LT~~~~~--~---~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  309 LYRVSLDSGGEPKCLTCEDGD--H---YSASFSPDGKYYVDTY  346 (353)
T ss_dssp             EEEEETTETTEEEESSTTSST--T---EEEEE-TTSSEEEEEE
T ss_pred             EEEEEeCCCCCeEeccCCCCC--c---eEEEECCCCCEEEEEE
Confidence            555555512222233221111  1   4478999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.22  E-value=5.4e-07  Score=90.08  Aligned_cols=202  Identities=17%  Similarity=0.171  Sum_probs=133.1

Q ss_pred             CCCEEEEEEecCCC-CEEEEEECCCeEEEEECCCCe---EEEeecCCCceeEEEecCCCCCEEEEEE----CCCeEEEEE
Q 009380          282 LGPISGIVTQQYCL-SKIFTSCYDGLIRLMDAEKEV---FDLVYSSEYAVFSLSQQPNNVNTLYFGE----GQGGLNIWD  353 (536)
Q Consensus       282 ~~~V~~l~~~~~~~-~~l~s~s~dg~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~~~~~l~~g~----~dg~i~i~d  353 (536)
                      ...+.|++++-+.. ..++.|..+|.|.+-.++...   ...+-++..++++++|++-+.++|++|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34567777665542 578888899999998876532   3344567789999999998767888874    356799999


Q ss_pred             CCCC--ccce--eEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCC
Q 009380          354 VRSR--KSAT--EWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGS  427 (536)
Q Consensus       354 ~~~~--~~~~--~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~  427 (536)
                      +.++  .+..  .+.+ -.....++||..+. .++.+|...+.++++|+|...     .....-.+..+..+..+| .++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~-----~~~~svnTk~vqG~tVdp~~~n  209 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSL-----DSVSSVNTKYVQGITVDPFSPN  209 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhh-----hhhhhhhhhhcccceecCCCCC
Confidence            9876  2222  2222 34556789999655 789999988999999999521     111112344667788899 778


Q ss_pred             eEEEEeCCCcEEEEe-CCCCCc-ceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcC-CCcEEEEcCC
Q 009380          428 SLATTSFDDTIGIWS-GVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNM-TRTVEVISPA  491 (536)
Q Consensus       428 ~l~t~s~dg~I~iwd-~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~-dg~I~v~d~~  491 (536)
                      |+++.. ||.|.+|| .++.+. +..+.+... ...-..+.++|.|... .+++... .+.|+.|++.
T Consensus       210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N-~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNEN-KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ceeccc-cCceeeccchhhhccHHHHHhhCCC-CcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            777665 99999999 444333 222322221 1122345577888532 3444444 4789999874

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.21  E-value=0.00083  Score=70.02  Aligned_cols=234  Identities=12%  Similarity=0.105  Sum_probs=136.1

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC-----EE-EEEEecCCCCEEEEEE---------CCCeEEEEECC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP-----IS-GIVTQQYCLSKIFTSC---------YDGLIRLMDAE  313 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-----V~-~l~~~~~~~~~l~s~s---------~dg~I~vwd~~  313 (536)
                      ..++.++.+|.|.-+|..+    ++.+..+......     +. ...+.  + ..++.++         .+|.|..+|..
T Consensus       111 ~~V~v~~~~g~v~AlD~~T----G~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~  183 (488)
T cd00216         111 RKVFFGTFDGRLVALDAET----GKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVE  183 (488)
T ss_pred             CeEEEecCCCeEEEEECCC----CCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECC
Confidence            5778888899999999988    4555444332210     11 11222  1 3455553         46889999999


Q ss_pred             CCeEEEeecCCC---------------------ce-eEEEecCCCCCEEEEEECCC------------------eEEEEE
Q 009380          314 KEVFDLVYSSEY---------------------AV-FSLSQQPNNVNTLYFGEGQG------------------GLNIWD  353 (536)
Q Consensus       314 ~~~~~~~~~~~~---------------------~i-~~l~~~~~~~~~l~~g~~dg------------------~i~i~d  353 (536)
                      +++....+....                     .+ .+..+.+.+ ..+++++.++                  .|.-+|
T Consensus       184 TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald  262 (488)
T cd00216         184 TGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALD  262 (488)
T ss_pred             CCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEc
Confidence            988765543211                     01 123333334 5788887665                  799999


Q ss_pred             CCCCccceeEec--cCC----CeEEEEEec----CC--CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEE
Q 009380          354 VRSRKSATEWLL--HEA----RINTIDFNP----RN--PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAY  421 (536)
Q Consensus       354 ~~~~~~~~~~~~--h~~----~i~~i~~~p----~~--~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~  421 (536)
                      ..+++.+..++.  |..    ......+.+    ++  ..+++.++.+|.+...|.++++.    .-....   ....+.
T Consensus       263 ~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~----~W~~~~---~~~~~~  335 (488)
T cd00216         263 ADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL----ISARPE---VEQPMA  335 (488)
T ss_pred             CCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE----eeEeEe---eccccc
Confidence            999998777652  211    000111111    12  12678888899999999999752    111110   011233


Q ss_pred             EccCCCeEEEE------------------eCCCcEEEEeCCCCCcceEEeccCCC-----CceeeeeEEEEcCCCCEEEE
Q 009380          422 FSPSGSSLATT------------------SFDDTIGIWSGVNFENTSMIHHNNQT-----GRWISSFRAIWGWDDSCVFI  478 (536)
Q Consensus       422 ~sp~g~~l~t~------------------s~dg~I~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~l~~  478 (536)
                      .+|  ..++.+                  ..+|.|.-.|+.+++.+.........     +.....  ......+..|++
T Consensus       336 ~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~--~~~~~~g~~v~~  411 (488)
T cd00216         336 YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG--GSLATAGNLVFA  411 (488)
T ss_pred             cCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC--cceEecCCeEEE
Confidence            333  222221                  24677888898888877666432100     000000  000124578999


Q ss_pred             EcCCCcEEEEcCCccccceeccC
Q 009380          479 GNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       479 gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      ++.||.|+.+|..+|+.+.+++.
T Consensus       412 g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         412 GAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             ECCCCeEEEEECCCCceeeEEEC
Confidence            99999999999999999888764

The alignment model contains an 8-bladed beta-propeller.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.18  E-value=1.3e-05  Score=82.79  Aligned_cols=188  Identities=11%  Similarity=0.090  Sum_probs=119.2

Q ss_pred             EEEEEecCCCCEEEEEEC----CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce
Q 009380          286 SGIVTQQYCLSKIFTSCY----DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT  361 (536)
Q Consensus       286 ~~l~~~~~~~~~l~s~s~----dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~  361 (536)
                      +-+.|+|.. .+|+.++.    .|+|.||- ++|.+..-....-.++++||+|.. -.|+.|-.-|.+.+|...+.+.-.
T Consensus        19 ti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~ht   95 (1416)
T KOG3617|consen   19 TISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHT   95 (1416)
T ss_pred             cccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHH-HHHhhccccceeEEEecCCceeee
Confidence            345788887 78877764    57787774 334433333333456789999987 678888888999999988776655


Q ss_pred             eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc--cCcee--EEEEccCCC------eEEE
Q 009380          362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH--KRAVH--SAYFSPSGS------SLAT  431 (536)
Q Consensus       362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~--~~~v~--~l~~sp~g~------~l~t  431 (536)
                      ....|..+|..+.|+++| ..++++..-|.|.+|......  ......+..|  ...++  +...++++.      ..++
T Consensus        96 v~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~~g--~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaV  172 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDVIG--EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAV  172 (1416)
T ss_pred             eccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeeecc--ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence            556899999999999988 799999999999999876422  1122222233  23333  444455532      2344


Q ss_pred             EeCCCcEE-EEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          432 TSFDDTIG-IWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       432 ~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      ++.+..+- .++.+.........+             .=.|+|..++.++.+|+|+..|-.+
T Consensus       173 tgDe~alD~~fnwk~~~a~rs~~k-------------sgv~~g~~F~~~~~~GtVyyvdq~g  221 (1416)
T KOG3617|consen  173 TGDESALDEPFNWKESLAERSDEK-------------SGVPKGTEFLFAGKSGTVYYVDQNG  221 (1416)
T ss_pred             cCchhhhcccccCccchhhccccc-------------cCCCCCcEEEEEcCCceEEEEcCCC
Confidence            44444333 333221111111111             1146888889999999998887543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.17  E-value=0.0015  Score=63.74  Aligned_cols=277  Identities=14%  Similarity=0.086  Sum_probs=132.4

Q ss_pred             EEEecCCcc-EEEEEeCCCc--EEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          241 KFLPCSDVR-MVVAGSKLGN--ITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       241 ~~~p~~~~~-~l~tg~~dg~--v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      +|.+  +|+ +|+++..+|.  +.+.|+.+     ..+..+.... .......+++++ +.++-...+..|+-.|+.+.+
T Consensus        42 ~ft~--dG~kllF~s~~dg~~nly~lDL~t-----~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e  113 (386)
T PF14583_consen   42 CFTD--DGRKLLFASDFDGNRNLYLLDLAT-----GEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLE  113 (386)
T ss_dssp             -B-T--TS-EEEEEE-TTSS-EEEEEETTT------EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--
T ss_pred             CcCC--CCCEEEEEeccCCCcceEEEEccc-----CEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCc
Confidence            4566  775 4555555654  55556664     2333333222 222345677887 777666667789999999988


Q ss_pred             EEEeecCCCc-eeEEEecCCCCCEEEEEEC-----------------------CCeEEEEECCCCccceeEeccCCCeEE
Q 009380          317 FDLVYSSEYA-VFSLSQQPNNVNTLYFGEG-----------------------QGGLNIWDVRSRKSATEWLLHEARINT  372 (536)
Q Consensus       317 ~~~~~~~~~~-i~~l~~~~~~~~~l~~g~~-----------------------dg~i~i~d~~~~~~~~~~~~h~~~i~~  372 (536)
                      ...++..... +-...|..+.....++|..                       .+.|...|+.+|+....+. -...+..
T Consensus       114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH  192 (386)
T PF14583_consen  114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH  192 (386)
T ss_dssp             EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred             EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence            7777765433 3345554222223333321                       2346777888877543333 5678899


Q ss_pred             EEEecCCCCEEEEEeC---CC-cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-----CCCcEEEEeC
Q 009380          373 IDFNPRNPNIMATSST---DG-TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-----FDDTIGIWSG  443 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~---dg-~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-----~dg~I~iwd~  443 (536)
                      +.|+|..+.+|+-|-+   +. .-+||-+++..... .++....-...+..=-|.|+|..|.--+     .+..|.-+|+
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~  271 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP  271 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred             cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence            9999998888888764   22 13667665432111 1111112234556667999998665433     2445777888


Q ss_pred             CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC----------------cEEEEcCCccccceeccCC-----
Q 009380          444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR----------------TVEVISPAQRRSVATLQSP-----  502 (536)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg----------------~I~v~d~~~~~~~~~l~~~-----  502 (536)
                      .+++....... ..   +.   ...-++||++++-=+.|.                .|+++++..+... .+.-|     
T Consensus       272 ~t~~~~~~~~~-p~---~~---H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~  343 (386)
T PF14583_consen  272 DTGERRRLMEM-PW---CS---HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWK  343 (386)
T ss_dssp             TT--EEEEEEE--S---EE---EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE------
T ss_pred             CCCCceEEEeC-Cc---ee---eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcce
Confidence            87765432221 11   11   133478887766533332                4566777665432 11111     


Q ss_pred             ----ceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          503 ----YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       503 ----~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                          +....-...+|+|.....|.+....|...||=+
T Consensus       344 v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  344 VLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             -BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             eecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                111112356788855455667778888888754

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.0025  Score=64.09  Aligned_cols=210  Identities=13%  Similarity=0.125  Sum_probs=144.0

Q ss_pred             EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC---CCeEEEEECCCCccce
Q 009380          285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG---QGGLNIWDVRSRKSAT  361 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~  361 (536)
                      -..++.++.+...+++...++.|.+.|..+...............+++.+++ ..++++..   ++.+.+.|-.+++.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~-~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDG-KYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCC-CEEEEEecccCCceEEEEeCCCCeEEE
Confidence            4577888888445666666799999998877766666555578899999998 45555544   6899999999988877


Q ss_pred             eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcE
Q 009380          362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTI  438 (536)
Q Consensus       362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I  438 (536)
                      ....-..+ ..+++.|++...+++-..++.|.+.|................-......+.++|+|.++.+....   +.+
T Consensus       155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v  233 (381)
T COG3391         155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV  233 (381)
T ss_pred             EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence            75533334 88999999965666666789999999776421100111112333455779999999976665544   589


Q ss_pred             EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-CcEEEEcCCccccceecc
Q 009380          439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-RTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I~v~d~~~~~~~~~l~  500 (536)
                      ...|..++........   .+.. ....+..+|+|.++.+.... +.+.+.|..+......+.
T Consensus       234 ~~id~~~~~v~~~~~~---~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         234 LKIDTATGNVTATDLP---VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             EEEeCCCceEEEeccc---cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            9999877665544211   1111 11225578999998888544 889999998876665544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=0.00013  Score=75.70  Aligned_cols=110  Identities=17%  Similarity=0.117  Sum_probs=83.3

Q ss_pred             ecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC
Q 009380          190 KDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ  269 (536)
Q Consensus       190 ~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~  269 (536)
                      .+.|...+++..      .++-...|.|.||--..+|..- -.-+-.+++++|||  ..-.|+.|-.-|.+.+|...+  
T Consensus        22 SWHPsePlfAVA------~fS~er~GSVtIfadtGEPqr~-Vt~P~hatSLCWHp--e~~vLa~gwe~g~~~v~~~~~--   90 (1416)
T KOG3617|consen   22 SWHPSEPLFAVA------SFSPERGGSVTIFADTGEPQRD-VTYPVHATSLCWHP--EEFVLAQGWEMGVSDVQKTNT--   90 (1416)
T ss_pred             ccCCCCceeEEE------EecCCCCceEEEEecCCCCCcc-cccceehhhhccCh--HHHHHhhccccceeEEEecCC--
Confidence            466777776632      2244566788888644443321 22245678899999  888889998899999999886  


Q ss_pred             CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          270 DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       270 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                        .+.-.....|..+|..+.|+++| +.++|+..-|.|.+|...
T Consensus        91 --~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 --TETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             --ceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence              44555567899999999999999 999999999999999865

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.10  E-value=0.00022  Score=72.10  Aligned_cols=195  Identities=11%  Similarity=0.067  Sum_probs=119.7

Q ss_pred             eEEeccCCCCEEEEEEecCCCCEEEEEECC---CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe--E
Q 009380          275 IYLFRTHLGPISGIVTQQYCLSKIFTSCYD---GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--L  349 (536)
Q Consensus       275 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~--i  349 (536)
                      ...+..-...+..-.|+|++..+.+..-..   ..+.++|++++....+....+.-..-+|+|++..++++...||.  |
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            333444445667778999984433332222   35999999998877777777777788999999767777777775  5


Q ss_pred             EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE--eCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380          350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW--DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS  427 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw--dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~  427 (536)
                      +++|+..+.. ..+....+.-..=.|+|+|..++.+.+..|.-.||  |+...     ...........-..-.|+|+|+
T Consensus       265 y~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-----~~~riT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         265 YLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-----QVTRLTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             EEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-----ceeEeeccCCCCcCccCCCCCC
Confidence            6667776663 33442223333568999998777777777765555  44432     2222222222223788999999


Q ss_pred             eEEEEeCC-Cc--EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          428 SLATTSFD-DT--IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       428 ~l~t~s~d-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                      +|+..+.. |.  |.++|+.++.....+......      -...|.++|..++..+.
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~------e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTYLN------ESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEccccccC------CCCCcCCCCceEEEecc
Confidence            99887753 44  666776655543333211111      11457788877665543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.10  E-value=0.00034  Score=71.48  Aligned_cols=155  Identities=10%  Similarity=0.058  Sum_probs=104.5

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccc--cCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARI--MPGRITQMKFLPCSDVRMVVAGSKLGNIT  261 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~--~~~~I~~v~~~p~~~~~~l~tg~~dg~v~  261 (536)
                      ..|..-.++..+++++-          +..-|.++||+-........+.  -.+.+..+..|+  +..++|+|+..|.|.
T Consensus        34 ~~v~lTc~dst~~~l~~----------GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~  101 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAM----------GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVS  101 (726)
T ss_pred             ceEEEEEeecCCceEEE----------ecccceEEEEecCchhhhcccccCccceEEEEEecc--hhHhhhhhcCCceEE
Confidence            34444555556666662          3455788888866554444333  456677778888  788999999999999


Q ss_pred             EEECCCCCCCCCceEE---eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-----eEEEeecCCCceeEEEec
Q 009380          262 FWNLDSQQDEDNGIYL---FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-----VFDLVYSSEYAVFSLSQQ  333 (536)
Q Consensus       262 iwd~~~~~~~~~~~~~---~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-----~~~~~~~~~~~i~~l~~~  333 (536)
                      ++.+..... ......   -+.|...|++++|++++ ..|++|...|.|.+-.+...     ....+...++.|..+++.
T Consensus       102 v~ql~~~~p-~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~  179 (726)
T KOG3621|consen  102 VFQLNKELP-RDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL  179 (726)
T ss_pred             eehhhccCC-CcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence            999886322 222221   12478899999999999 99999999999999888772     234455667888888887


Q ss_pred             CCCCCEEEEEECCCeEEEEECCC
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~  356 (536)
                      ..   +|++++.- .-.+++++.
T Consensus       180 q~---~LLVStl~-r~~Lc~tE~  198 (726)
T KOG3621|consen  180 QS---YLLVSTLT-RCILCQTEA  198 (726)
T ss_pred             cc---eehHhhhh-hhheeecch
Confidence            53   44444433 234445443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=98.07  E-value=0.016  Score=58.03  Aligned_cols=278  Identities=14%  Similarity=0.145  Sum_probs=152.5

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec---CCCCEEEEEECCCeEEEEECCC--C------
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ---YCLSKIFTSCYDGLIRLMDAEK--E------  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~l~s~s~dg~I~vwd~~~--~------  315 (536)
                      +...|++|+..|.++||+..........+..-..-..+|..+..-.   ......++.-.-..+.||.+..  +      
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            4578999999999999999654322222333334467888887643   2223344445677788888732  1      


Q ss_pred             --eEEEeecCC--CceeEEEecCCC----CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          316 --VFDLVYSSE--YAVFSLSQQPNN----VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       316 --~~~~~~~~~--~~i~~l~~~~~~----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                        .+...+.|.  .....+++-|-|    ..++++-+.||.+.+|+-+.-...+.+.. ---...+++.+.- ..|++++
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t-Dsfvt~s  193 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT-DSFVTAS  193 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC-CEEEEec
Confidence              233444443  444555554432    36899999999999999665432223321 1222346777754 6888888


Q ss_pred             CCCcEEEEeCCCCCCC------------------CCCcceeecccCceeE---EEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          388 TDGTACIWDLRSMATD------------------KPEPMKVLSHKRAVHS---AYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~------------------~~~~~~~~~~~~~v~~---l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      .+..|..|........                  ...+.-.+.-...+..   +.++.....|++-+ ..++.+.+. ++
T Consensus       194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~G  271 (418)
T PF14727_consen  194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-NG  271 (418)
T ss_pred             CceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-CC
Confidence            8888998876432110                  0001111112223333   33333333344444 345666664 34


Q ss_pred             CcceEEeccCCCCceeeeeEEEEcCCC---CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          447 ENTSMIHHNNQTGRWISSFRAIWGWDD---SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g---~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      ......+. .-...+...+...+..++   ..+++++.++.+.||.-.+  .++.-...+..+ ...++..+.-..+|++
T Consensus       272 ~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PV-al~v~~~~~~~G~IV~  347 (418)
T PF14727_consen  272 SLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPV-ALSVANFNGLKGLIVS  347 (418)
T ss_pred             eEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCE-EEEecccCCCCceEEE
Confidence            33333332 222223333444233332   2588999999999997544  333333323222 2333333333479999


Q ss_pred             EccCCeEEE
Q 009380          524 ATGGGQVYV  532 (536)
Q Consensus       524 gs~Dg~v~i  532 (536)
                      -+.+|.|.+
T Consensus       348 Ls~~G~L~v  356 (418)
T PF14727_consen  348 LSDEGQLSV  356 (418)
T ss_pred             EcCCCcEEE
Confidence            999999876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0083  Score=60.37  Aligned_cols=241  Identities=12%  Similarity=0.082  Sum_probs=143.1

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE  362 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~  362 (536)
                      ....+...+++....++-.....+...+............. .....++.++.+.+..+....+..|.+.|..+......
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            45567788887333333333335555555532222222222 44567788888855666666678999999887776666


Q ss_pred             EeccCCCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEE
Q 009380          363 WLLHEARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIG  439 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~  439 (536)
                      ...- .....+.+.|++..+.++-.  .++++.+.|-.+.+    .......-..+ ..++++|+|..++++. .++.|.
T Consensus       112 ~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~----~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~  185 (381)
T COG3391         112 IPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK----VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVS  185 (381)
T ss_pred             eeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEE
Confidence            5522 26678999998866555555  36888888887753    22222222233 8899999999666655 788999


Q ss_pred             EEeCCCCCcce-EEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCccccceeccCCceeeeeeeEeecC
Q 009380          440 IWSGVNFENTS-MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       440 iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      ++|........ ........+.  ....+.++++|.++.+....   +.+.+.|..++.....-...... .+..+..+|
T Consensus       186 vi~~~~~~v~~~~~~~~~~~~~--~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p  262 (381)
T COG3391         186 VIDTSGNSVVRGSVGSLVGVGT--GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDP  262 (381)
T ss_pred             EEeCCCcceeccccccccccCC--CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECC
Confidence            99976554442 1000011111  11226689999977666544   58999999888666552211221 223456667


Q ss_pred             CCCCEEEEEc-cCCeEEEEe
Q 009380          516 HQVGTLAGAT-GGGQVYVWT  534 (536)
Q Consensus       516 ~~~~~lasgs-~Dg~v~iW~  534 (536)
                       ++..+.+.. ..+.|.+-|
T Consensus       263 -~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         263 -AGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             -CCCEEEEEecCCCeEEEEe
Confidence             456665553 335555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.98  E-value=0.013  Score=56.26  Aligned_cols=228  Identities=14%  Similarity=0.127  Sum_probs=129.6

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-------
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-------  319 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-------  319 (536)
                      .++.|+.|+.+| |.++++...   .......  +...|..+...+.- +.|++-+ |+.+.++++..-....       
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~---~~~~~i~--~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDP---SKPTRIL--KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCC---ccceeEe--ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccc
Confidence            678999999888 999999331   2222222  22339999999987 6666665 6999999987532222       


Q ss_pred             --------eecCCCceeEEE--ecCCCCCEEEEEECCCeEEEEECCCC-----ccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          320 --------VYSSEYAVFSLS--QQPNNVNTLYFGEGQGGLNIWDVRSR-----KSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       320 --------~~~~~~~i~~l~--~~~~~~~~l~~g~~dg~i~i~d~~~~-----~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                              .......+..++  -...+...|+++... .|.+|.....     +....+. -...+.+++|.+   +.++
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~  152 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKIC  152 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEE
Confidence                    122233444444  223333455555544 8888887653     3344554 458889999994   4677


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeec----------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce--EE
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLS----------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS--MI  452 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~----------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~--~~  452 (536)
                      .|..+ ...+.|+.++...  .......          ...++..+... ++.+|++  .|..-.+.|. .+++..  .+
T Consensus       153 v~~~~-~f~~idl~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~fv~~-~G~~~r~~~i  225 (275)
T PF00780_consen  153 VGTSK-GFYLIDLNTGSPS--ELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVFVNK-NGEPSRKSTI  225 (275)
T ss_pred             EEeCC-ceEEEecCCCCce--EEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEEEcC-CCCcCcccEE
Confidence            77644 4888999975421  1110011          11233333333 4555553  3443334443 443333  22


Q ss_pred             eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380          453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY  503 (536)
Q Consensus       453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~  503 (536)
                      .....    ...  +.+  ...||++.+. +.|.||++.+++.++.+....
T Consensus       226 ~W~~~----p~~--~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~  267 (275)
T PF00780_consen  226 QWSSA----PQS--VAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLPN  267 (275)
T ss_pred             EcCCc----hhE--EEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence            22211    111  222  2347777665 459999999999988887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.94  E-value=0.0047  Score=57.45  Aligned_cols=194  Identities=14%  Similarity=0.194  Sum_probs=110.7

Q ss_pred             ccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          232 IMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      +....++.+.|.|  + +.++++....+.|..++.+     +..+..+.-. .+-.-.|++..++ .++++.-.++.+.+
T Consensus        19 g~~~e~SGLTy~p--d~~tLfaV~d~~~~i~els~~-----G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   19 GILDELSGLTYNP--DTGTLFAVQDEPGEIYELSLD-----GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYI   90 (248)
T ss_dssp             T--S-EEEEEEET--TTTEEEEEETTTTEEEEEETT-------EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEE
T ss_pred             CccCCccccEEcC--CCCeEEEEECCCCEEEEEcCC-----CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEE
Confidence            3445599999999  5 4567777777888777765     4555554333 2457889998776 55555556899999


Q ss_pred             EECCCC--e--E---EE-e--e--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---CccceeE--------ecc
Q 009380          310 MDAEKE--V--F---DL-V--Y--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---RKSATEW--------LLH  366 (536)
Q Consensus       310 wd~~~~--~--~---~~-~--~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---~~~~~~~--------~~h  366 (536)
                      +++...  .  .   .. .  .  .++..+-.++|.+.+ +.|+++-...-..+|.+..   ...+...        ...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF  169 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence            988431  1  1   11 1  1  244678999999988 5666666665666666653   2111111        123


Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec-----c-----cCceeEEEEccCCCeEEEEeCCC
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-----H-----KRAVHSAYFSPSGSSLATTSFDD  436 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~-----~-----~~~v~~l~~sp~g~~l~t~s~dg  436 (536)
                      ...+.+++++|..+++++.+..+..|.++|.. +     .+.....     |     -...-.|+|.++|++. ..+.-+
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G-----~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpN  242 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-G-----RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPN  242 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT--------EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTT
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCC-C-----CEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCc
Confidence            45688999999887888888889999999944 3     2322221     1     1356789999999744 445555


Q ss_pred             cEEEE
Q 009380          437 TIGIW  441 (536)
Q Consensus       437 ~I~iw  441 (536)
                      ..++|
T Consensus       243 lfy~f  247 (248)
T PF06977_consen  243 LFYRF  247 (248)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            55544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.92  E-value=0.0019  Score=64.74  Aligned_cols=209  Identities=10%  Similarity=0.114  Sum_probs=119.8

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCe--------------------------E------------------EE
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV--------------------------F------------------DL  319 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~--------------------------~------------------~~  319 (536)
                      .|+.+.|.++. .-|+.+...|.|.+|.....+                          +                  ..
T Consensus         3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            47889999987 788999999999888653210                          0                  01


Q ss_pred             eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--c------cCCCeEEEEEec----CCC---CEEE
Q 009380          320 VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--L------HEARINTIDFNP----RNP---NIMA  384 (536)
Q Consensus       320 ~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~------h~~~i~~i~~~p----~~~---~~l~  384 (536)
                      +....++|++++.+.-|  ++++|..+|.+.|.|+|.+..++.-.  .      ....|+++.|.-    ++.   -+++
T Consensus        82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            11235789999998665  99999999999999999887766532  1      234688888862    111   3788


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcce---e-ecccCceeEEE-EccC-C-------------------CeEEEEeCCCcEE
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMK---V-LSHKRAVHSAY-FSPS-G-------------------SSLATTSFDDTIG  439 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~---~-~~~~~~v~~l~-~sp~-g-------------------~~l~t~s~dg~I~  439 (536)
                      +|...|.+.+|.+--... ......   . ..+...|..+. |+.+ |                   +-++..+.+..++
T Consensus       160 vGTn~G~v~~fkIlp~~~-g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSN-GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEETTSEEEEEEEEE-GG-G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEeCCCCEEEEEEecCCC-CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            899999999998752110 111111   1 13556665555 3221 1                   1234444467799


Q ss_pred             EEeCCCCCcceEEeccCCCCceeeeeEEEE-----cCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380          440 IWSGVNFENTSMIHHNNQTGRWISSFRAIW-----GWDDSCVFIGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      |+...+.+..+... .  .  ...+-.+.+     ...+..|++-..+|.|++|.+..-+.+..+..
T Consensus       239 v~~~~~~k~~~K~~-~--~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  239 VFKPPKSKGAHKSF-D--D--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             EE-TT---EEEEE--S--S---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             EEeCCCCcccceee-c--c--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence            99988776655443 1  1  111111222     23466788889999999999999888777654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.89  E-value=0.013  Score=59.54  Aligned_cols=174  Identities=14%  Similarity=0.092  Sum_probs=96.9

Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC---CCc-----eeEE
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS---EYA-----VFSL  330 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~---~~~-----i~~l  330 (536)
                      .|.||+..     +..+..+.--.+.|.++.|..+  ..|+....||.++++|+.... ....+.   ...     +...
T Consensus        62 ~I~iys~s-----G~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~  133 (410)
T PF04841_consen   62 SIQIYSSS-----GKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAI  133 (410)
T ss_pred             EEEEECCC-----CCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eechhhhccccCccccccccc
Confidence            48888887     4555554433488999999885  577788899999999997544 221111   112     2222


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCc-cceeEe---c-----cCC-CeEE-EEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWL---L-----HEA-RINT-IDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~---~-----h~~-~i~~-i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      .+..+|   +++-+.++.+.+..--... ....+.   .     +.. .... ..+..+. ...+....++.+.+.+-..
T Consensus       134 ~~~~~G---ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~  209 (410)
T PF04841_consen  134 WFYKNG---IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENS  209 (410)
T ss_pred             ccCCCC---EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccc
Confidence            333344   3333455555555322211 111110   0     000 0111 2233333 3344444455666444332


Q ss_pred             CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      .+       . ....+++..++.||+|++||.-..+|.+.+.+..-.+....+
T Consensus       210 ~~-------~-i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~  254 (410)
T PF04841_consen  210 FK-------Q-IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF  254 (410)
T ss_pred             cc-------c-ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence            11       0 223468999999999999999999999999886544444444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.88  E-value=0.00049  Score=70.99  Aligned_cols=188  Identities=12%  Similarity=0.040  Sum_probs=114.3

Q ss_pred             eeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCC----cEEEE
Q 009380          188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLG----NITFW  263 (536)
Q Consensus       188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg----~v~iw  263 (536)
                      .+++++||+.+..         .....+.+...|.........-...+.-..++++|  +|.++++.+.+.    ++..-
T Consensus       197 ~~PlpnDGk~l~~---------~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~sp--dGk~afvTsyNsE~G~tl~em  265 (635)
T PRK02888        197 RIPLPNDGKDLDD---------PKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDY--DGKYAFSTCYNSEEGVTLAEM  265 (635)
T ss_pred             ccccCCCCCEeec---------ccceeEEEEEEECccceEEEEEEeCCCcccceECC--CCCEEEEeccCcccCcceeee
Confidence            4567777775532         24455666666654321111111245566788888  888888776422    22222


Q ss_pred             ECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-----CeEEEeecCCCceeEEEecCCCCC
Q 009380          264 NLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-----EVFDLVYSSEYAVFSLSQQPNNVN  338 (536)
Q Consensus       264 d~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-----~~~~~~~~~~~~i~~l~~~~~~~~  338 (536)
                      +..+    ...+..|..-.  +  -.+.++| ++...  .++.|.+.|..+     ...............+.++|++..
T Consensus       266 ~a~e----~d~~vvfni~~--i--ea~vkdG-K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGky  334 (635)
T PRK02888        266 MAAE----RDWVVVFNIAR--I--EEAVKAG-KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKY  334 (635)
T ss_pred             cccc----CceEEEEchHH--H--HHhhhCC-CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCE
Confidence            2211    11111111000  0  0234466 55554  367899999988     456666677788899999999955


Q ss_pred             EEEEEECCCeEEEEECCCCcc------------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          339 TLYFGEGQGGLNIWDVRSRKS------------ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       339 ~l~~g~~dg~i~i~d~~~~~~------------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      +++++..+.+|.++|+.+.+.            +.+... ...-...+|.++| +...|-..|..|..|++..
T Consensus       335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence            555666789999999987553            233332 2233457888877 6888888899999999876

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.84  E-value=0.0043  Score=61.00  Aligned_cols=215  Identities=13%  Similarity=0.144  Sum_probs=117.2

Q ss_pred             CeEEEEECCCCeEEEee--cCCCceeEEEe---cCC---CCCEEEEEEC---------C-CeEEEEECCCC----cccee
Q 009380          305 GLIRLMDAEKEVFDLVY--SSEYAVFSLSQ---QPN---NVNTLYFGEG---------Q-GGLNIWDVRSR----KSATE  362 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~--~~~~~i~~l~~---~~~---~~~~l~~g~~---------d-g~i~i~d~~~~----~~~~~  362 (536)
                      +.|++.|..+......+  .....+.+++.   ..+   ...+|++|+.         . |.|.+|++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35777777665443322  23344554443   222   1367887764         2 89999999884    12222


Q ss_pred             E--eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC--ceeEEEEccCCCeEEEEeCCCcE
Q 009380          363 W--LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR--AVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       363 ~--~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~--~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                      +  ....++|++|+-.. + . |+++. .+.|.+|++...+    .......+..  .+.++..  .+++|++|.....+
T Consensus        82 i~~~~~~g~V~ai~~~~-~-~-lv~~~-g~~l~v~~l~~~~----~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv  151 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN-G-R-LVVAV-GNKLYVYDLDNSK----TLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSV  151 (321)
T ss_dssp             EEEEEESS-EEEEEEET-T-E-EEEEE-TTEEEEEEEETTS----SEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSE
T ss_pred             EEEEeecCcceEhhhhC-C-E-EEEee-cCEEEEEEccCcc----cchhhheecceEEEEEEec--cccEEEEEEcccCE
Confidence            2  24578899998873 3 4 44444 4789999998743    2333333333  4555544  46799999988888


Q ss_pred             EEEeCCC-CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc-------cc-cceeccCCceeeeee
Q 009380          439 GIWSGVN-FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ-------RR-SVATLQSPYISAIPC  509 (536)
Q Consensus       439 ~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~-------~~-~~~~l~~~~~~~~~~  509 (536)
                      .++..+. ...+..+... ....++..  +.+-.+++.++++..+|.|.++....       +. .+......|.+....
T Consensus       152 ~~~~~~~~~~~l~~va~d-~~~~~v~~--~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~  228 (321)
T PF03178_consen  152 SLLRYDEENNKLILVARD-YQPRWVTA--AEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVN  228 (321)
T ss_dssp             EEEEEETTTE-EEEEEEE-SS-BEEEE--EEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EE
T ss_pred             EEEEEEccCCEEEEEEec-CCCccEEE--EEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccc
Confidence            8885543 2223333322 22344444  55654556999999999999987753       11 222222212222223


Q ss_pred             eE---eecCC--CC-----CEEEEEccCCeEEE
Q 009380          510 RF---HAHPH--QV-----GTLAGATGGGQVYV  532 (536)
Q Consensus       510 ~~---~~~p~--~~-----~~lasgs~Dg~v~i  532 (536)
                      .+   +..|.  +.     ..++.++.+|.|.+
T Consensus       229 ~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  229 SFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             eEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence            33   43441  21     24888889998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.84  E-value=0.0036  Score=67.17  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=95.9

Q ss_pred             CEEEEE-ECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC------CCEEEEEECCCeEEEEECCCCc--ccee-Ee-
Q 009380          296 SKIFTS-CYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN------VNTLYFGEGQGGLNIWDVRSRK--SATE-WL-  364 (536)
Q Consensus       296 ~~l~s~-s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~------~~~l~~g~~dg~i~i~d~~~~~--~~~~-~~-  364 (536)
                      ++|+.- .....|+-.|++.|+++.-......+.-..+.|+.      +...++|-.+..|..||.|-..  ++.. .. 
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~  573 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ  573 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence            444443 34678999999999988776554433333444431      2456778888899999999643  2211 11 


Q ss_pred             -ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          365 -LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       365 -~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                       .......|++-..+|  +||+|+.+|.|++||- .+.   .....+.+...+|.+|..+.||++|++.|. ..|.|++.
T Consensus       574 Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~---~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  574 YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGK---RAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cch---hhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence             234557788877765  7999999999999993 332   123334467899999999999999888774 55777774

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.83  E-value=0.012  Score=56.52  Aligned_cols=269  Identities=11%  Similarity=0.084  Sum_probs=147.6

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEe--cc-C
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLF--RT-H  281 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~--~~-h  281 (536)
                      +.+.+.|.+... ..-..-.+-.-.+..+|  +++.+.+++          ..-.|.+||..+.    .....+  .. |
T Consensus        17 ~rv~viD~d~~k-~lGmi~~g~~~~~~~sp--dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL----~~~~EI~iP~k~   89 (342)
T PF06433_consen   17 SRVYVIDADSGK-LLGMIDTGFLGNVALSP--DGKTIYVAETFYSRGTRGERTDVVEIWDTQTL----SPTGEIEIPPKP   89 (342)
T ss_dssp             EEEEEEETTTTE-EEEEEEEESSEEEEE-T--TSSEEEEEEEEEEETTEEEEEEEEEEEETTTT----EEEEEEEETTS-
T ss_pred             ceEEEEECCCCc-EEEEeecccCCceeECC--CCCEEEEEEEEEeccccccceeEEEEEecCcC----cccceEecCCcc
Confidence            467777753321 11122234455677888  888887642          3346899999873    222211  11 1


Q ss_pred             C----CCEEEEEEecCCCCEEEEEE--CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380          282 L----GPISGIVTQQYCLSKIFTSC--YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR  355 (536)
Q Consensus       282 ~----~~V~~l~~~~~~~~~l~s~s--~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~  355 (536)
                      .    .....+.++.++ ++++..-  --.+|.|-|+..+++.......+...-   .|.++.-+.+-|.||.+..+.+.
T Consensus        90 R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~i---yP~~~~~F~~lC~DGsl~~v~Ld  165 (342)
T PF06433_consen   90 RAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLI---YPSGNRGFSMLCGDGSLLTVTLD  165 (342)
T ss_dssp             B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEE---EEEETTEEEEEETTSCEEEEEET
T ss_pred             hheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEE---EecCCCceEEEecCCceEEEEEC
Confidence            1    112345677777 7666553  346688888888887766655543332   33344568899999999999988


Q ss_pred             -CCccceeEe----ccCCCe-EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCceeEEE
Q 009380          356 -SRKSATEWL----LHEARI-NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVHSAY  421 (536)
Q Consensus       356 -~~~~~~~~~----~h~~~i-~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~~l~  421 (536)
                       .|+...+..    .-.+++ ..-.+...+ ..++--+.+|.|+-.|+............+..        -.+.-.-++
T Consensus       166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A  244 (342)
T PF06433_consen  166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA  244 (342)
T ss_dssp             STSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred             CCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence             455432211    111222 122333333 34555678899999888764311111111110        123445578


Q ss_pred             EccCCCeEEEEe---CCC-------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEE-cCCCcEEEEc
Q 009380          422 FSPSGSSLATTS---FDD-------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIG-NMTRTVEVIS  489 (536)
Q Consensus       422 ~sp~g~~l~t~s---~dg-------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~g-s~dg~I~v~d  489 (536)
                      +++..+.|++--   .++       .|-+||+.+.+.+..+.....    +..  +..+.+.+ +|++. ..++.+.+||
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~----~~S--i~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP----IDS--IAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE----ESE--EEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc----cce--EEEccCCCcEEEEEcCCCCeEEEEe
Confidence            887554444421   122       388889999888888754322    223  33355543 55544 4578999999


Q ss_pred             CCccccceeccC
Q 009380          490 PAQRRSVATLQS  501 (536)
Q Consensus       490 ~~~~~~~~~l~~  501 (536)
                      ..+|+.+..+..
T Consensus       319 ~~tGk~~~~~~~  330 (342)
T PF06433_consen  319 AATGKLVRSIEQ  330 (342)
T ss_dssp             TTT--EEEEE--
T ss_pred             CcCCcEEeehhc
Confidence            999999888764

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.82  E-value=0.00066  Score=68.60  Aligned_cols=188  Identities=19%  Similarity=0.205  Sum_probs=116.8

Q ss_pred             CCceEEEEEEecCCccEEEEEe---CC-CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe--E
Q 009380          234 PGRITQMKFLPCSDVRMVVAGS---KL-GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL--I  307 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~---~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~--I  307 (536)
                      ...+..-+|+|  ++..++.-+   .. ..+.++++.++.  ...+..+.++..   .-.|+|+|..++++...||.  |
T Consensus       192 ~~~~~~p~ws~--~~~~~~y~~f~~~~~~~i~~~~l~~g~--~~~i~~~~g~~~---~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         192 GSLILTPAWSP--DGKKLAYVSFELGGCPRIYYLDLNTGK--RPVILNFNGNNG---APAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             CcceeccccCc--CCCceEEEEEecCCCceEEEEeccCCc--cceeeccCCccC---CccCCCCCCEEEEEECCCCCccE
Confidence            55677789999  776655442   22 358899998754  344555555543   56899999666667777776  4


Q ss_pred             EEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe--EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          308 RLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       308 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      .++|+.++....+....+.-..=.|+|+|..++++.+..|.  |.++|+..+.. ..+......-..-.|+|+|..++..
T Consensus       265 y~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         265 YLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             EEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence            55577776655544444444467899999655566555664  55666655543 3333333333377899999655555


Q ss_pred             EeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC
Q 009380          386 SSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF  434 (536)
Q Consensus       386 ~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~  434 (536)
                      ...+|.  |.+.|+.++.    . .....+......-.|.|+|..+...+.
T Consensus       344 ~~~~g~~~i~~~~~~~~~----~-~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         344 SSSGGQWDIDKNDLASGG----K-IRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             eccCCceeeEEeccCCCC----c-EEEccccccCCCCCcCCCCceEEEecc
Confidence            533455  6666666542    1 444455556667778888877665553

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.81  E-value=0.013  Score=54.52  Aligned_cols=207  Identities=8%  Similarity=0.050  Sum_probs=107.9

Q ss_pred             EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380          277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR  355 (536)
Q Consensus       277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~  355 (536)
                      .+.+-...++.|+|+|+...++++....+.|..++.+......+ +...+..-.|++..++ .++++.-.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEe
Confidence            44455567999999998746677777788898888764433322 2234678889998665 444444458899999984


Q ss_pred             CCcc------ceeEe-----ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc--ee------ecccCc
Q 009380          356 SRKS------ATEWL-----LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM--KV------LSHKRA  416 (536)
Q Consensus       356 ~~~~------~~~~~-----~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~--~~------~~~~~~  416 (536)
                      ....      ...+.     .+...+-.++|.|.+..++ .+-...-..||.++.... .....  ..      ......
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPG-GFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT--SS--EEEE-HHHH-HT--SS-
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccC-ccceeeccccccccccceecc
Confidence            3211      12222     2445689999999775444 455555666776654110 00111  00      113456


Q ss_pred             eeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          417 VHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       417 v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      +.+++++| .+++++.+..+..|.++| .+++.+..+......    ......=-++|+++|.+.+++ .-+..++|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            78999999 567777777888899999 566665555422210    011111226788888655554 44444443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.81  E-value=0.0048  Score=61.56  Aligned_cols=258  Identities=11%  Similarity=0.098  Sum_probs=131.4

Q ss_pred             CccEEEEE---------eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          247 DVRMVVAG---------SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       247 ~~~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      |+++++..         +..+.+.|||+.+     ..+..+......+....|+|+| +.++... ++.|.+++..++..
T Consensus         3 d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-----~~~~~l~~~~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    3 DGKFVLFATNYTKQWRHSFKGDYYIYDIET-----GEITPLTPPPPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             TSSEEEEEEEEEEESSSEEEEEEEEEETTT-----TEEEESS-EETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCeEEEEECcEEeeeeccceeEEEEecCC-----CceEECcCCccccccceeecCC-CeeEEEe-cCceEEEECCCCCe
Confidence            77776663         2346789999986     2333333336678899999998 8877775 67899999877754


Q ss_pred             EEeecCC------------------CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC---CCeEEEEEe
Q 009380          318 DLVYSSE------------------YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE---ARINTIDFN  376 (536)
Q Consensus       318 ~~~~~~~------------------~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---~~i~~i~~~  376 (536)
                      ..+....                  ..-..+-|+|++..+++.-..+..|..+.+-.      .....   -.+..+.+-
T Consensus        76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~------~~~~~~~yp~~~~~~YP  149 (353)
T PF00930_consen   76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPD------YSPPDSQYPEVESIRYP  149 (353)
T ss_dssp             EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEE------ESSSTESS-EEEEEE--
T ss_pred             EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeec------cCCccccCCcccccccC
Confidence            4333211                  12357889999944444444455555444321      11111   123344432


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCCeEEEEe--CCC---cEEEEeCCCCCcce
Q 009380          377 PRNPNIMATSSTDGTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGSSLATTS--FDD---TIGIWSGVNFENTS  450 (536)
Q Consensus       377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg---~I~iwd~~~~~~~~  450 (536)
                      .-|.. -..    -.+.|+|+.+++..... ......-..-+..+.|.+++..|+..-  .+.   .+.++|..++....
T Consensus       150 k~G~~-np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~  224 (353)
T PF00930_consen  150 KAGDP-NPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV  224 (353)
T ss_dssp             BTTS----E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred             CCCCc-CCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence            22321 111    14778898876421000 001123456788999999998444433  222   37777877765544


Q ss_pred             EEeccCCCCceeeee-EEEEc-CCC-CEEEEEcCCCc--EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380          451 MIHHNNQTGRWISSF-RAIWG-WDD-SCVFIGNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       451 ~~~~~~~~~~~~~~~-~~~~s-~~g-~~l~~gs~dg~--I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      .....  ...|+... ...|. +++ .+|.....+|.  |.+++..++.. ..+..+.-.+ .-.+.+.+....+..+++
T Consensus       225 ~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~-~~lT~G~~~V-~~i~~~d~~~~~iyf~a~  300 (353)
T PF00930_consen  225 VLEET--SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP-RQLTSGDWEV-TSILGWDEDNNRIYFTAN  300 (353)
T ss_dssp             EEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE-EESS-SSS-E-EEEEEEECTSSEEEEEES
T ss_pred             EEEec--CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccce-eccccCceee-cccceEcCCCCEEEEEec
Confidence            44221  22233211 12333 444 45555556664  56666666643 3443322222 234566665444445555


Q ss_pred             c
Q 009380          526 G  526 (536)
Q Consensus       526 ~  526 (536)
                      .
T Consensus       301 ~  301 (353)
T PF00930_consen  301 G  301 (353)
T ss_dssp             S
T ss_pred             C
Confidence            4

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.81  E-value=0.0043  Score=63.01  Aligned_cols=223  Identities=11%  Similarity=0.086  Sum_probs=115.8

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE-ECCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM-DAEK  314 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw-d~~~  314 (536)
                      ....+.++|  +|+++++++ +|.-.|+....    ... ..    .+.-....|.+.  +.+++-...++|.++ ++..
T Consensus        34 ~p~~ls~np--ngr~v~V~g-~geY~iyt~~~----~r~-k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   34 YPQSLSHNP--NGRFVLVCG-DGEYEIYTALA----WRN-KA----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             --SEEEE-T--TSSEEEEEE-TTEEEEEETTT----TEE-EE----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTEE
T ss_pred             CCeeEEECC--CCCEEEEEc-CCEEEEEEccC----Ccc-cc----cCceeEEEEecC--ccEEEEECCCeEEEEEcCcc
Confidence            467899999  999999854 78888888442    222 11    133456889884  578888888999996 3432


Q ss_pred             CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380          315 EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI  394 (536)
Q Consensus       315 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i  394 (536)
                      .. ...+.....+..|-.   | .+|...+.+ .|.+||+.+++.+..+...  .|..|.|++++ .+++..+. ..+.|
T Consensus       100 ~~-~k~i~~~~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g-~~val~t~-~~i~i  169 (443)
T PF04053_consen  100 EV-VKSIKLPFSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDG-ELVALVTK-DSIYI  169 (443)
T ss_dssp             -T-T-----SS-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTS-SEEEEE-S--SEEE
T ss_pred             cc-ceEEcCCcccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCC-CEEEEEeC-CeEEE
Confidence            22 111222223444433   4 667766655 8999999999999988733  38999999987 57777764 47888


Q ss_pred             EeCCCC------CCCCCCcceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380          395 WDLRSM------ATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       395 wdl~~~------~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                      ++....      .......+.... ....|.+..|..+  .|+-.+.. .|+.+  -+++ ..++.+...   .+..  +
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge-~~~i~~ld~---~~yl--l  238 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGE-TGIIAHLDK---PLYL--L  238 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTE-EEEEEE-SS-----EE--E
T ss_pred             EEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCC-cceEEEcCC---ceEE--E
Confidence            875541      000001233332 2678999999865  34433433 66663  3332 233333222   2233  3


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          468 IWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       468 ~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      .+.+..+.++....++.|..+.+...
T Consensus       239 gy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  239 GYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             EEEccCCEEEEEECCCCEEEEEECHH
Confidence            34565677888888888888876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.78  E-value=0.0013  Score=70.41  Aligned_cols=143  Identities=16%  Similarity=0.161  Sum_probs=99.3

Q ss_pred             CccEEEEE-eCCCcEEEEECCCCCCCCCceEEeccCCCC-EEEEEEecC----CCCEEEEEECCCeEEEEECCCC--eEE
Q 009380          247 DVRMVVAG-SKLGNITFWNLDSQQDEDNGIYLFRTHLGP-ISGIVTQQY----CLSKIFTSCYDGLIRLMDAEKE--VFD  318 (536)
Q Consensus       247 ~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~----~~~~l~s~s~dg~I~vwd~~~~--~~~  318 (536)
                      +..+|+.. .....|+-.|+..    ++.+..+..|... |..++-...    .+...+.|-.+..|..||.+-.  ++.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~----GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v  567 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLER----GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV  567 (794)
T ss_pred             ccceEeecCCCCCceEEEecCC----CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence            44455443 3456788888887    7889999888754 555543211    1245677778889999998753  222


Q ss_pred             E----eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          319 L----VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       319 ~----~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                      .    .+.......|++-..+|  +|++|+.+|.|++||- .++. -..+.+...+|.+|+.+.||..+|+||  +..|.
T Consensus       568 ~~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLl  642 (794)
T PF08553_consen  568 DSQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLL  642 (794)
T ss_pred             eccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEE
Confidence            1    23345678888888776  8999999999999994 4433 334557789999999999996555555  56788


Q ss_pred             EEeCC
Q 009380          394 IWDLR  398 (536)
Q Consensus       394 iwdl~  398 (536)
                      +++..
T Consensus       643 Li~t~  647 (794)
T PF08553_consen  643 LIDTL  647 (794)
T ss_pred             EEEEe
Confidence            88753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.76  E-value=0.019  Score=58.36  Aligned_cols=226  Identities=15%  Similarity=0.126  Sum_probs=110.2

Q ss_pred             EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380          277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~  356 (536)
                      .+.........+.++|++ +.++.+ .||.-.++......-..    .+.....+|.+.  +.+++-..++.|.++.--.
T Consensus        27 ~lg~~~~~p~~ls~npng-r~v~V~-g~geY~iyt~~~~r~k~----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   27 ELGSCEIYPQSLSHNPNG-RFVLVC-GDGEYEIYTALAWRNKA----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             EEEE-SS--SEEEE-TTS-SEEEEE-ETTEEEEEETTTTEEEE----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTE
T ss_pred             cCCCCCcCCeeEEECCCC-CEEEEE-cCCEEEEEEccCCcccc----cCceeEEEEecC--ccEEEEECCCeEEEEEcCc
Confidence            333444557899999998 777774 47878888744333222    245667889885  4677777788999974333


Q ss_pred             CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC
Q 009380          357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD  436 (536)
Q Consensus       357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg  436 (536)
                      ......+.. ...+..|-.   | .+|+..+. +.|.+||+.++     ..+...... .|..+.|+++|.+++..+.+ 
T Consensus        99 ~~~~k~i~~-~~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~-----~~i~~i~v~-~vk~V~Ws~~g~~val~t~~-  165 (443)
T PF04053_consen   99 NEVVKSIKL-PFSVEKIFG---G-NLLGVKSS-DFICFYDWETG-----KLIRRIDVS-AVKYVIWSDDGELVALVTKD-  165 (443)
T ss_dssp             E-TT------SS-EEEEE----S-SSEEEEET-TEEEEE-TTT-------EEEEESS--E-EEEEE-TTSSEEEEE-S--
T ss_pred             cccceEEcC-CcccceEEc---C-cEEEEECC-CCEEEEEhhHc-----ceeeEEecC-CCcEEEEECCCCEEEEEeCC-
Confidence            333334432 223343332   5 56666654 48999999985     333333333 38999999999999988855 


Q ss_pred             cEEEEeCCCC----------CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceee
Q 009380          437 TIGIWSGVNF----------ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISA  506 (536)
Q Consensus       437 ~I~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~  506 (536)
                      .+.|++....          +......+.  ....+.  ..+|..+  .|+-.+.+ .|+.+--.....+..+..    .
T Consensus       166 ~i~il~~~~~~~~~~~~~g~e~~f~~~~E--~~~~Ik--Sg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld~----~  234 (443)
T PF04053_consen  166 SIYILKYNLEAVAAIPEEGVEDAFELIHE--ISERIK--SGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLDK----P  234 (443)
T ss_dssp             SEEEEEE-HHHHHHBTTTB-GGGEEEEEE--E-S--S--EEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-SS-----
T ss_pred             eEEEEEecchhcccccccCchhceEEEEE--ecceeE--EEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcCC----c
Confidence            5777764321          001111111  011122  2556655  44333333 555532222223444432    1


Q ss_pred             eeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          507 IPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      . ..+...|. .+.|.....|+.|..+.++
T Consensus       235 ~-yllgy~~~-~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  235 L-YLLGYLPK-ENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             --EEEEEETT-TTEEEEE-TT--EEEEE--
T ss_pred             e-EEEEEEcc-CCEEEEEECCCCEEEEEEC
Confidence            1 23455553 3788888888888887664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.74  E-value=0.014  Score=57.35  Aligned_cols=174  Identities=12%  Similarity=0.092  Sum_probs=105.8

Q ss_pred             cEEEEECCCCCCCCCceEEeccC-CCCEEEEEE---ecC---CCCEEEEEEC----------CCeEEEEECCCC-----e
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTH-LGPISGIVT---QQY---CLSKIFTSCY----------DGLIRLMDAEKE-----V  316 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~---~~~---~~~~l~s~s~----------dg~I~vwd~~~~-----~  316 (536)
                      .|++.|..+    ...+..+.-. ...+.+++.   ..+   ...+|+.|..          .|.|.++++...     +
T Consensus         3 ~i~l~d~~~----~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~   78 (321)
T PF03178_consen    3 SIRLVDPTT----FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK   78 (321)
T ss_dssp             EEEEEETTT----SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E
T ss_pred             EEEEEeCCC----CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE
Confidence            567777765    3344333221 223444433   221   1267776653          289999999884     4


Q ss_pred             EEEe--ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          317 FDLV--YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWL-LHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       317 ~~~~--~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      +..+  ....++|++++-. ++  .|+++.. +.|.+|++...+ ....-. .....+.++...  + ++++.|.....+
T Consensus        79 l~~i~~~~~~g~V~ai~~~-~~--~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv  151 (321)
T PF03178_consen   79 LKLIHSTEVKGPVTAICSF-NG--RLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV  151 (321)
T ss_dssp             EEEEEEEEESS-EEEEEEE-TT--EEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred             EEEEEEEeecCcceEhhhh-CC--EEEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence            4433  3457899999887 33  4555554 599999999877 332222 233467777766  3 589999888888


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      .++.++... ..-..+........++++.|-++++.++++..+|.|.++...
T Consensus       152 ~~~~~~~~~-~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  152 SLLRYDEEN-NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             EEEEEETTT-E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEccC-CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            888555411 001111222346678899998776789999999999999875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.71  E-value=0.022  Score=54.60  Aligned_cols=220  Identities=12%  Similarity=0.112  Sum_probs=122.5

Q ss_pred             CEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-----------
Q 009380          296 SKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-----------  363 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-----------  363 (536)
                      +.|+.|+.+| |.++++.. ....... ....|..+...++- +.+++-+ |+.|.++++..-......           
T Consensus         8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~   83 (275)
T PF00780_consen    8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL   83 (275)
T ss_pred             CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence            7899999898 89999933 3333322 23349999999876 4555443 489999998865443311           


Q ss_pred             ---eccCCCeEEEE--EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380          364 ---LLHEARINTID--FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       364 ---~~h~~~i~~i~--~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                         ......+..++  -...+...|+++. ...|.+|.+...................+.++.|.  ++.|+.+..++ .
T Consensus        84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f  159 (275)
T PF00780_consen   84 PTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-F  159 (275)
T ss_pred             cccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-e
Confidence               11223444444  1122333444444 56899998876421110234445567889999998  55677776554 8


Q ss_pred             EEEeCCCCCcceEEeccCCC---------CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce--eccCCceeee
Q 009380          439 GIWSGVNFENTSMIHHNNQT---------GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA--TLQSPYISAI  507 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~--~l~~~~~~~~  507 (536)
                      .+.|+.++.....+......         ...+..+   --+++.+|++-  +..-.+.|.. |+...  .+.-..   .
T Consensus       160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~---~  230 (275)
T PF00780_consen  160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIF---QLSDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSS---A  230 (275)
T ss_pred             EEEecCCCCceEEeCccCCcchhhhcccCCCceEEE---EeCCceEEEEe--cceEEEEcCC-CCcCcccEEEcCC---c
Confidence            89999876655444222111         1122222   22345666654  3333344443 32322  222111   1


Q ss_pred             eeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          508 PCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       508 ~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +..+.+.   ..+|++.+.+ .|.||++.
T Consensus       231 p~~~~~~---~pyli~~~~~-~iEV~~~~  255 (275)
T PF00780_consen  231 PQSVAYS---SPYLIAFSSN-SIEVRSLE  255 (275)
T ss_pred             hhEEEEE---CCEEEEECCC-EEEEEECc
Confidence            2234443   2577777765 49999874

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.69  E-value=0.014  Score=59.58  Aligned_cols=252  Identities=12%  Similarity=0.111  Sum_probs=125.5

Q ss_pred             cccccccc-CCceEEEEEEecCCccEEEEE-eCCC----cEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEE
Q 009380          226 PENIARIM-PGRITQMKFLPCSDVRMVVAG-SKLG----NITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKI  298 (536)
Q Consensus       226 ~~~~~~~~-~~~I~~v~~~p~~~~~~l~tg-~~dg----~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l  298 (536)
                      +....+.+ .-.+..+.++|  ++++||.+ +..|    .|+++|+.+    +..+.. +... . ...+.|.+++ ..|
T Consensus       114 ~n~l~~~~~~~~~~~~~~Sp--dg~~la~~~s~~G~e~~~l~v~Dl~t----g~~l~d~i~~~-~-~~~~~W~~d~-~~~  184 (414)
T PF02897_consen  114 PNELAKDGGYVSLGGFSVSP--DGKRLAYSLSDGGSEWYTLRVFDLET----GKFLPDGIENP-K-FSSVSWSDDG-KGF  184 (414)
T ss_dssp             GGGGSTTSS-EEEEEEEETT--TSSEEEEEEEETTSSEEEEEEEETTT----TEEEEEEEEEE-E-SEEEEECTTS-SEE
T ss_pred             chHhhccCceEEeeeeeECC--CCCEEEEEecCCCCceEEEEEEECCC----CcCcCCccccc-c-cceEEEeCCC-CEE
Confidence            34444444 23344567788  99988866 3444    499999987    433322 1211 1 1239999998 555


Q ss_pred             EEEECCC-----------eEEEEECCCCeE--EEeecC-C-Cc-eeEEEecCCCCCEEEEEE-CC---CeEEEEECCCC-
Q 009380          299 FTSCYDG-----------LIRLMDAEKEVF--DLVYSS-E-YA-VFSLSQQPNNVNTLYFGE-GQ---GGLNIWDVRSR-  357 (536)
Q Consensus       299 ~s~s~dg-----------~I~vwd~~~~~~--~~~~~~-~-~~-i~~l~~~~~~~~~l~~g~-~d---g~i~i~d~~~~-  357 (536)
                      +....+.           .|+.|.+.+...  ..++.. . .. ...+..++++ ++|+... ..   ..+.+.|+..+ 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~-~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG-RYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS-SEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc-cEEEEEEEccccCCeEEEEeccccC
Confidence            5444332           378888877543  244433 2 22 5688889988 5655433 22   35888898875 


Q ss_pred             ---ccceeEeccCCCeE-EEEEecCCCCEEEEEeC---CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEE
Q 009380          358 ---KSATEWLLHEARIN-TIDFNPRNPNIMATSST---DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       358 ---~~~~~~~~h~~~i~-~i~~~p~~~~~l~s~s~---dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~  430 (536)
                         .....+......+. .+...  +..+++....   .+.|.-.++...... .....+..+...+.-..+...+.+|+
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lv  340 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLV  340 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEE
Confidence               23444444444444 34444  3344444432   366777787764310 01123445655433334444455555


Q ss_pred             EEe-CCC--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE--EEEcCC--CcEEEEcCCccc
Q 009380          431 TTS-FDD--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV--FIGNMT--RTVEVISPAQRR  494 (536)
Q Consensus       431 t~s-~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l--~~gs~d--g~I~v~d~~~~~  494 (536)
                      ... .++  .|++|++..+.....+...  ....+..  ....+++..+  ...+..  ..+..||+.+++
T Consensus       341 l~~~~~~~~~l~v~~~~~~~~~~~~~~p--~~g~v~~--~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  341 LSYRENGSSRLRVYDLDDGKESREIPLP--EAGSVSG--VSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEEETTEEEEEEEETT-TEEEEEEESS--SSSEEEE--EES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EEEEECCccEEEEEECCCCcEEeeecCC--cceEEec--cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            544 444  4889998723333333221  1112222  2223333332  223322  567777777764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.68  E-value=0.062  Score=57.71  Aligned_cols=284  Identities=10%  Similarity=0.055  Sum_probs=147.0

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      +..|.-..|--  |..+|.++..||.+.-|.++.........+...--+.|+.=-.|+..+.+.+++++ |.-..+|..+
T Consensus       583 PRSIl~~~~e~--d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n  659 (1096)
T KOG1897|consen  583 PRSILLTTFEG--DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSN  659 (1096)
T ss_pred             chheeeEEeec--cceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecC
Confidence            44565666655  68899999999999888776532111111211223456666677776645666655 5555566554


Q ss_pred             CCeEEEeecCCCceeEEEecC-CCCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEEEEEeCC-
Q 009380          314 KEVFDLVYSSEYAVFSLSQQP-NNVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIMATSSTD-  389 (536)
Q Consensus       314 ~~~~~~~~~~~~~i~~l~~~~-~~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-  389 (536)
                      ..-...-.....--..+.|+. ..+..++.+.. +.+.+.-+..-+.  ++++. -......+++++.. .++.+.+.- 
T Consensus       660 ~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~s-l~~~v~s~r~  736 (1096)
T KOG1897|consen  660 GKLVYSPLSLKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESS-LTFGVLSNRI  736 (1096)
T ss_pred             CcEEEeccchHHhhhhcccccccCCceEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccc-eEEEEEeccc
Confidence            432221111111111122222 22234555444 3666665543221  33433 33445667777633 344443321 


Q ss_pred             -------------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-CCeEEEEeC----------CCcEEEEeCCC
Q 009380          390 -------------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSF----------DDTIGIWSGVN  445 (536)
Q Consensus       390 -------------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~----------dg~I~iwd~~~  445 (536)
                                   ..++++|-.+.+...............|.++.|..| +.++++|..          .|.|.||.+..
T Consensus       737 e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e  816 (1096)
T KOG1897|consen  737 ESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE  816 (1096)
T ss_pred             ccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec
Confidence                         136666665532000000000112235666678876 677777753          46788887776


Q ss_pred             CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380          446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      ...+..+....-.+.....  +  --+|++||.-  +..|++|+..+.+.+..-..++...+...+..   .++.++.|.
T Consensus       817 ~~~L~~v~e~~v~Gav~aL--~--~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v---~gdeI~VgD  887 (1096)
T KOG1897|consen  817 LNSLELVAETVVKGAVYAL--V--EFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQV---KGDEIAVGD  887 (1096)
T ss_pred             CCceeeeeeeeeccceeeh--h--hhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEe---cCcEEEEee
Confidence            4444444322222222221  1  1256666554  45899999998866665555555554444444   467888887


Q ss_pred             cCCeEEE
Q 009380          526 GGGQVYV  532 (536)
Q Consensus       526 ~Dg~v~i  532 (536)
                      -=+.+.+
T Consensus       888 lm~Sitl  894 (1096)
T KOG1897|consen  888 LMRSITL  894 (1096)
T ss_pred             ccceEEE
Confidence            6666554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.64  E-value=0.0032  Score=49.82  Aligned_cols=102  Identities=10%  Similarity=0.128  Sum_probs=71.3

Q ss_pred             EEEEEEe---cCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce
Q 009380          285 ISGIVTQ---QYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT  361 (536)
Q Consensus       285 V~~l~~~---~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~  361 (536)
                      |+++++.   .+|.+.|+.||.|..|++|+-+  ....-......|++++-...  ..++.+..+|+|.+|+-.  ..+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG--GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC--CEEEEEecCCEEEEEeCc--ceee
Confidence            5566554   4555899999999999999865  33444455678888888776  479999999999999853  2233


Q ss_pred             eEeccCCCeEEEEEec---CCCCEEEEEeCCCcEE
Q 009380          362 EWLLHEARINTIDFNP---RNPNIMATSSTDGTAC  393 (536)
Q Consensus       362 ~~~~h~~~i~~i~~~p---~~~~~l~s~s~dg~i~  393 (536)
                      ..+ ....+.++.+..   +|..-|++|-.+|.|-
T Consensus        76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            333 334466666553   3444788888888764

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00027  Score=71.28  Aligned_cols=96  Identities=16%  Similarity=0.192  Sum_probs=82.3

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEE-EEEEecCCCCEEEEEECCCeEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPIS-GIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~-~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      ...+-.|.-+.|+|  ..++||.+..+|.|.+..+.     .+.+.++..|...++ +++|.||| +.|+.|-.||+|++
T Consensus        17 ~~l~~~i~~~ewnP--~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L   88 (665)
T KOG4640|consen   17 MSLPINIKRIEWNP--KMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRL   88 (665)
T ss_pred             hccccceEEEEEcC--ccchhheeccCCcEEEEEec-----cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEE
Confidence            44466788999999  88999999999999999988     577888887888888 99999998 99999999999999


Q ss_pred             EECCCCeEEEe--ecCCCceeEEEecC
Q 009380          310 MDAEKEVFDLV--YSSEYAVFSLSQQP  334 (536)
Q Consensus       310 wd~~~~~~~~~--~~~~~~i~~l~~~~  334 (536)
                      .|++++.....  +.....|.++-|.+
T Consensus        89 ~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   89 HDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             EEccCCCceeccccccccchheeeccc
Confidence            99999866554  55567888888864

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.62  E-value=0.094  Score=55.08  Aligned_cols=189  Identities=11%  Similarity=0.120  Sum_probs=103.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEE----------EEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPIS----------GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~----------~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ..|++++.++.|.-.|..+    ++.+-.+.... ..+.          .+++.  + ..++.++.|+.|..+|..+++.
T Consensus        70 g~vyv~s~~g~v~AlDa~T----Gk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~  142 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKT----GKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKV  142 (527)
T ss_pred             CEEEEECCCCcEEEEECCC----CceeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCE
Confidence            4666667777888888777    44444332211 0011          12222  2 5678888999999999999987


Q ss_pred             EEeecCCC-----ceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCC------------------
Q 009380          318 DLVYSSEY-----AVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEA------------------  368 (536)
Q Consensus       318 ~~~~~~~~-----~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~------------------  368 (536)
                      ........     .+.+--...+  ..++++..      +|.|.-+|.++|+.+-.+..-..                  
T Consensus       143 ~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~  220 (527)
T TIGR03075       143 VWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA  220 (527)
T ss_pred             EeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence            65543211     1111101112  35666543      68999999999987655431100                  


Q ss_pred             -------------Ce-EEEEEecCCCCEEEEEeCC-----C-----------cEEEEeCCCCCCCCCCcceeeccc----
Q 009380          369 -------------RI-NTIDFNPRNPNIMATSSTD-----G-----------TACIWDLRSMATDKPEPMKVLSHK----  414 (536)
Q Consensus       369 -------------~i-~~i~~~p~~~~~l~s~s~d-----g-----------~i~iwdl~~~~~~~~~~~~~~~~~----  414 (536)
                                   .+ ..+++.|.. .++..+..+     +           .|.-.|+++++..  -..+...|.    
T Consensus       221 ~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~--W~~Q~~~~D~wD~  297 (527)
T TIGR03075       221 KTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIK--WHYQTTPHDEWDY  297 (527)
T ss_pred             CCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEE--EeeeCCCCCCccc
Confidence                         01 123555533 344444311     2           4666677776521  111111221    


Q ss_pred             ---CceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcc
Q 009380          415 ---RAVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENT  449 (536)
Q Consensus       415 ---~~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~  449 (536)
                         ....-+.+..+|+   .++.+..+|.+.+.|-.+++.+
T Consensus       298 d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       298 DGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence               1112222334665   7888999999999999988775

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.55  E-value=0.032  Score=53.62  Aligned_cols=263  Identities=12%  Similarity=0.087  Sum_probs=145.3

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----------CCeEEEEECCCCeEEE--eecCC-
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----------DGLIRLMDAEKEVFDL--VYSSE-  324 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----------dg~I~vwd~~~~~~~~--~~~~~-  324 (536)
                      +.+.|+|.++    .+.+-.+..  +-.-.+..+|++ +.+++++.          .-.|.+||..+-....  ..... 
T Consensus        17 ~rv~viD~d~----~k~lGmi~~--g~~~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~   89 (342)
T PF06433_consen   17 SRVYVIDADS----GKLLGMIDT--GFLGNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKP   89 (342)
T ss_dssp             EEEEEEETTT----TEEEEEEEE--ESSEEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-
T ss_pred             ceEEEEECCC----CcEEEEeec--ccCCceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcc
Confidence            4688888876    444444432  223346788998 77776542          4468999999865432  22211 


Q ss_pred             -----CceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380          325 -----YAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       325 -----~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                           .....++++.++ +++++...  --.|.|.|+..++.+.++... +   |....|.++.-|.+-|.||.+.-..+
T Consensus        90 R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~L  164 (342)
T PF06433_consen   90 RAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTL  164 (342)
T ss_dssp             B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             hheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEE
Confidence                 123446777777 66666543  357899999888887777632 1   33334545566888888999999988


Q ss_pred             CCCCCCCCCcceee-c-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC-----Cceeee-e-EEE
Q 009380          398 RSMATDKPEPMKVL-S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT-----GRWISS-F-RAI  468 (536)
Q Consensus       398 ~~~~~~~~~~~~~~-~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-----~~~~~~-~-~~~  468 (536)
                      .............+ . ....+..-.+...+..++-.+.+|.|+-.|+........-.....+     ..|--. . -++
T Consensus       165 d~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A  244 (342)
T PF06433_consen  165 DADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA  244 (342)
T ss_dssp             TSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred             CCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence            85321110111111 1 1222334455555555666789999999888655432221111000     011000 0 034


Q ss_pred             EcCCCCEEEEEcC---C-------CcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE-ccCCeEEEEec
Q 009380          469 WGWDDSCVFIGNM---T-------RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA-TGGGQVYVWTS  535 (536)
Q Consensus       469 ~s~~g~~l~~gs~---d-------g~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg-s~Dg~v~iW~~  535 (536)
                      +++....|++--.   +       ..|-+||+.+++.+..+...+. +  .++..+-.+..+|.+. ..++.|.|||.
T Consensus       245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~--~Si~Vsqd~~P~L~~~~~~~~~l~v~D~  319 (342)
T PF06433_consen  245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-I--DSIAVSQDDKPLLYALSAGDGTLDVYDA  319 (342)
T ss_dssp             EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-E--SEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred             eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-c--ceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence            5554444443211   1       2488889999999999875432 2  1344444444577654 56899999985

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.53  E-value=0.032  Score=57.05  Aligned_cols=246  Identities=11%  Similarity=0.045  Sum_probs=130.0

Q ss_pred             eeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCc-eEEEEEEecCCccEEEEEeCCC------
Q 009380          186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGR-ITQMKFLPCSDVRMVVAGSKLG------  258 (536)
Q Consensus       186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~-I~~v~~~p~~~~~~l~tg~~dg------  258 (536)
                      +....++|+|+.++...+..     ++....+++.|+..... +....... -..+.|.+  ++..|+....+.      
T Consensus       126 ~~~~~~Spdg~~la~~~s~~-----G~e~~~l~v~Dl~tg~~-l~d~i~~~~~~~~~W~~--d~~~~~y~~~~~~~~~~~  197 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDG-----GSEWYTLRVFDLETGKF-LPDGIENPKFSSVSWSD--DGKGFFYTRFDEDQRTSD  197 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEET-----TSSEEEEEEEETTTTEE-EEEEEEEEESEEEEECT--TSSEEEEEECSTTTSS-C
T ss_pred             eeeeeECCCCCEEEEEecCC-----CCceEEEEEEECCCCcC-cCCcccccccceEEEeC--CCCEEEEEEeCccccccc
Confidence            34678999999999663222     12223688888755422 22222222 23399999  877666554332      


Q ss_pred             -----cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE-ECC---CeEEEEECCCC-----eEEEeecCC
Q 009380          259 -----NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYD---GLIRLMDAEKE-----VFDLVYSSE  324 (536)
Q Consensus       259 -----~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~-s~d---g~I~vwd~~~~-----~~~~~~~~~  324 (536)
                           .|+.|.+.+.......+.....+......+..++++ .+|+.. ...   ..+.+.++..+     ....+....
T Consensus       198 ~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~-~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  198 SGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG-RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             CGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS-SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             CCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc-cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence                 378888877432112233322222226688899998 666543 332   35788888874     555555544


Q ss_pred             CceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCcc---ceeEeccCC--CeEEEEEecCCCCEEEEEeCCC--cEEE
Q 009380          325 YAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKS---ATEWLLHEA--RINTIDFNPRNPNIMATSSTDG--TACI  394 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~---~~~~~~h~~--~i~~i~~~p~~~~~l~s~s~dg--~i~i  394 (536)
                      ..+....-+..+ .+++...   .++.|...++.....   ...+..+..  .+..+...  +..+++....++  .|++
T Consensus       277 ~~~~~~v~~~~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v  353 (414)
T PF02897_consen  277 DGVEYYVDHHGD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRV  353 (414)
T ss_dssp             SS-EEEEEEETT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred             CceEEEEEccCC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEE
Confidence            444433333333 3443332   246788888887764   224455665  45555554  435666665554  4788


Q ss_pred             EeCC-CCCCCCCCcceee-cccCceeEEEEccCCCeEE-E-EeC--CCcEEEEeCCCCCc
Q 009380          395 WDLR-SMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLA-T-TSF--DDTIGIWSGVNFEN  448 (536)
Q Consensus       395 wdl~-~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~-t-~s~--dg~I~iwd~~~~~~  448 (536)
                      +|+. ..     ...... .-.+.|..+...++++.+. + .|.  -+++..||+.+++.
T Consensus       354 ~~~~~~~-----~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  354 YDLDDGK-----ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             EETT-TE-----EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             EECCCCc-----EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            8988 32     122222 2334455665555554332 2 222  34577777776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.51  E-value=0.084  Score=53.61  Aligned_cols=182  Identities=12%  Similarity=0.096  Sum_probs=89.7

Q ss_pred             eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc------cceeEeccCCCeEEEEEecCC
Q 009380          306 LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK------SATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~------~~~~~~~h~~~i~~i~~~p~~  379 (536)
                      .|.+|+.....+..+.-..+.|.++.|..+.  .|++-..||.+++||+....      .+.........+..+.+...|
T Consensus        62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCCCCEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            3666665554443332222789999998864  67777899999999986322      111111122223333333334


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCC----CCCcceee-cccC-ceeE-EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          380 PNIMATSSTDGTACIWDLRSMATD----KPEPMKVL-SHKR-AVHS-AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~----~~~~~~~~-~~~~-~v~~-l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                       -.++++  ++.+.+..--.....    ...+.... .+.. .... ..++.+....+....++.+.+.+-...+.   +
T Consensus       140 -ivvLt~--~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  140 -IVVLTG--NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             -EEEECC--CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence             333333  444443322111000    00000000 0000 1111 23444455555555555566444332211   1


Q ss_pred             eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380          453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      .   ..+   ....++.||+|++||.-+.+|.+.|.+..-.+.+..+..
T Consensus       214 ~---~~~---~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  214 D---SDG---PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             c---CCC---CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence            0   112   123377899999999999999998887665555555443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.46  E-value=0.011  Score=46.79  Aligned_cols=104  Identities=14%  Similarity=0.207  Sum_probs=72.3

Q ss_pred             eEEEEEEecC-Cc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          237 ITQMKFLPCS-DV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       237 I~~v~~~p~~-~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      |+++++.... +| +.|++|+.|..|++|+-+      ..+..+.. ...|+++.-...  ..|+.+..+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD------EIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC------cEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc
Confidence            6778877642 22 689999999999999865      34555544 456777777665  6899999999999998754


Q ss_pred             CeEEEeecCCCceeEEEecC---CCCCEEEEEECCCeEEE
Q 009380          315 EVFDLVYSSEYAVFSLSQQP---NNVNTLYFGEGQGGLNI  351 (536)
Q Consensus       315 ~~~~~~~~~~~~i~~l~~~~---~~~~~l~~g~~dg~i~i  351 (536)
                      ....  ......+.++++..   ++..-|++|-.+|.|-+
T Consensus        73 RlWR--iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   73 RLWR--IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             eeee--eccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            4332  23344466666543   44457899999988753

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.46  E-value=0.073  Score=51.41  Aligned_cols=200  Identities=12%  Similarity=0.090  Sum_probs=115.6

Q ss_pred             EEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-E
Q 009380          241 KFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-D  318 (536)
Q Consensus       241 ~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-~  318 (536)
                      .|.+  +.. ++.+--..+.|.-|+..++     ....+.. ...+.++.....+ ..|+++...  +.+++.+++.. .
T Consensus        31 ~w~~--~~~~L~w~DI~~~~i~r~~~~~g-----~~~~~~~-p~~~~~~~~~d~~-g~Lv~~~~g--~~~~~~~~~~~~t   99 (307)
T COG3386          31 VWDP--DRGALLWVDILGGRIHRLDPETG-----KKRVFPS-PGGFSSGALIDAG-GRLIACEHG--VRLLDPDTGGKIT   99 (307)
T ss_pred             cCcC--CCCEEEEEeCCCCeEEEecCCcC-----ceEEEEC-CCCcccceeecCC-CeEEEEccc--cEEEeccCCceeE
Confidence            3555  443 5555556677888887642     2223322 2334555544444 566666433  56777766555 2


Q ss_pred             Eeec-----CCCceeEEEecCCCCCEEEEEECC------------CeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          319 LVYS-----SEYAVFSLSQQPNNVNTLYFGEGQ------------GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       319 ~~~~-----~~~~i~~l~~~~~~~~~l~~g~~d------------g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      .+..     .....+.+...|+| . +++++..            |.|+.+|. .+..+..+..+-..-+.|+|+||+..
T Consensus       100 ~~~~~~~~~~~~r~ND~~v~pdG-~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386         100 LLAEPEDGLPLNRPNDGVVDPDG-R-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             EeccccCCCCcCCCCceeEcCCC-C-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence            2221     12456678888887 3 4444333            44555554 45555555555566789999999954


Q ss_pred             EEEEEeCCCcEEEEeCCC--CCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCC-cEEEEeCCCCCcceEEecc
Q 009380          382 IMATSSTDGTACIWDLRS--MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDD-TIGIWSGVNFENTSMIHHN  455 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~--~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg-~I~iwd~~~~~~~~~~~~~  455 (536)
                      ++++=+..+.|.-|++..  +........... ...+..-.++...+|++.+++..+| .|.+|+.. ++.+..+...
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            444444558888887763  221111111111 3456677788888898776555554 89999987 7777776543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.45  E-value=0.18  Score=53.05  Aligned_cols=240  Identities=13%  Similarity=0.115  Sum_probs=135.0

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEecc--CC--CCEEEEEEecCCCCEEEEEEC------CCeEEEEECCCCeEE
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--HL--GPISGIVTQQYCLSKIFTSCY------DGLIRLMDAEKEVFD  318 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--h~--~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~~~  318 (536)
                      ..|+.++.++.|.-.|..+    ++.+-.+..  +.  ..+++--..-+  ..++.+..      +|.|..+|.++++..
T Consensus       121 ~~v~v~t~dg~l~ALDa~T----Gk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKT----GKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKTGKLV  194 (527)
T ss_pred             CEEEEEcCCCEEEEEECCC----CCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCCCcee
Confidence            4567778889999999887    444443321  11  11111111112  35555542      689999999998765


Q ss_pred             EeecCC--------------------------------Ccee-EEEecCCCCCEEEEEECC-----C-----------eE
Q 009380          319 LVYSSE--------------------------------YAVF-SLSQQPNNVNTLYFGEGQ-----G-----------GL  349 (536)
Q Consensus       319 ~~~~~~--------------------------------~~i~-~l~~~~~~~~~l~~g~~d-----g-----------~i  349 (536)
                      ..+...                                ..++ .+.+.+.. ++++.+..+     +           .|
T Consensus       195 W~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~  273 (527)
T TIGR03075       195 WRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSI  273 (527)
T ss_pred             EeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence            443211                                1111 33556655 577777632     2           67


Q ss_pred             EEEECCCCccceeEeccCCCe---------EEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCC------cc--ee
Q 009380          350 NIWDVRSRKSATEWLLHEARI---------NTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPE------PM--KV  410 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~h~~~i---------~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~------~~--~~  410 (536)
                      .-.|+++|+..-.++.....+         .-+.+..++.  ..++.+..+|.+++.|-++++.....      ..  .+
T Consensus       274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~  353 (527)
T TIGR03075       274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV  353 (527)
T ss_pred             EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence            888999999877776322211         1122223443  47889999999999999987632100      00  00


Q ss_pred             e---------------------------cccC--ceeEEEEccCCCeEEEEeCC--------------------------
Q 009380          411 L---------------------------SHKR--AVHSAYFSPSGSSLATTSFD--------------------------  435 (536)
Q Consensus       411 ~---------------------------~~~~--~v~~l~~sp~g~~l~t~s~d--------------------------  435 (536)
                      .                           +..+  .-..++++|...+++....+                          
T Consensus       354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  433 (527)
T TIGR03075       354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK  433 (527)
T ss_pred             CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence            0                           0000  00125667765555544333                          


Q ss_pred             -------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380          436 -------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       436 -------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                             |.|.-+|+.+++.............  ..    ..-.+..+++++.+|.++.+|..+|+.+..+..
T Consensus       434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~--~~----l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWG--GV----LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             CCCCCCceeEEEEeCCCCceeeEecCCCCCCC--cc----eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence                   3455666666655554432211100  00    111455788888999999999999999988765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.33  E-value=0.0081  Score=59.80  Aligned_cols=139  Identities=9%  Similarity=0.061  Sum_probs=97.6

Q ss_pred             EEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC------CEEEEEECCCeEEEEECCCCcc--ceeEeccC--
Q 009380          298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV------NTLYFGEGQGGLNIWDVRSRKS--ATEWLLHE--  367 (536)
Q Consensus       298 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~------~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~--  367 (536)
                      |.++..-..|+-.|++.|+++........|.-+.+.|+..      ..-++|-.+..|.-||+|-...  +...++|.  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            4455556778899999999888777666688888877641      2245577888999999985332  22222332  


Q ss_pred             --CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          368 --ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       368 --~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                        ....|++-..+|  ++++||.+|.|++||- .+.   .....+.+...+|..|..+.+|++|++.| +..+.+.++
T Consensus       429 ~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~---~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  429 TKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGR---RAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             cccccceeeecCCc--eEEEeecCCcEEeehh-hhh---hhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence              334566655544  8999999999999996 332   23334557888999999999999887766 556777664

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.33  E-value=0.31  Score=52.63  Aligned_cols=289  Identities=11%  Similarity=0.077  Sum_probs=152.1

Q ss_pred             cccCCceEEEEEEecCCc----cEEEEEeCCCcEEEEECCCCCCCCCceEEe--cc--CCCCEEEEEEecCCCCEEEEEE
Q 009380          231 RIMPGRITQMKFLPCSDV----RMVVAGSKLGNITFWNLDSQQDEDNGIYLF--RT--HLGPISGIVTQQYCLSKIFTSC  302 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~----~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~--~~--h~~~V~~l~~~~~~~~~l~s~s  302 (536)
                      +.....|.|+.++|..++    ++++.|..+..+.+.-....   ...+...  .+  -...|.-..|-.+. .+|+++.
T Consensus       527 ~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd---~~~~~~~~l~~~~iPRSIl~~~~e~d~-~yLlval  602 (1096)
T KOG1897|consen  527 KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD---LILITHEQLSGEIIPRSILLTTFEGDI-HYLLVAL  602 (1096)
T ss_pred             heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC---cceeeeeccCCCccchheeeEEeeccc-eEEEEEc
Confidence            445789999999985444    37888888777666544431   1222111  11  12345555666666 8999999


Q ss_pred             CCCeEEEEEC--CCCeEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEE-EEe
Q 009380          303 YDGLIRLMDA--EKEVFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI-DFN  376 (536)
Q Consensus       303 ~dg~I~vwd~--~~~~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i-~~~  376 (536)
                      .||.+..+-+  .++......   -...++.=-.|+..+.+.+ .+..|.-..+|.-+ ++.+.+-- .-..+..+ .|+
T Consensus       603 gdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~v-fa~sdrP~viY~~n-~kLv~spl-s~kev~~~c~f~  679 (1096)
T KOG1897|consen  603 GDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAV-FALSDRPTVIYSSN-GKLVYSPL-SLKEVNHMCPFN  679 (1096)
T ss_pred             CCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEE-EEeCCCCEEEEecC-CcEEEecc-chHHhhhhcccc
Confidence            9999876654  455433222   2334555556666653344 34445555555533 22221110 11111111 122


Q ss_pred             -cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC--------------CcEEEE
Q 009380          377 -PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD--------------DTIGIW  441 (536)
Q Consensus       377 -p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d--------------g~I~iw  441 (536)
                       +..+..++++. .+.+++.-+.....   .-.....-......+++.+....+.+.+.-              ..++++
T Consensus       680 s~a~~d~l~~~~-~~~l~i~tid~iqk---l~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl  755 (1096)
T KOG1897|consen  680 SDAYPDSLASAN-GGALTIGTIDEIQK---LHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVL  755 (1096)
T ss_pred             cccCCceEEEec-CCceEEEEecchhh---cceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEe
Confidence             22334566665 45677776665431   112223444566777777755545444321              136777


Q ss_pred             eCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeee
Q 009380          442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      |-++.+.+...... ......+++.+.|..| +.++++|+.          .|.|.||....++.+..+..+.....+.+
T Consensus       756 D~nTf~vl~~hef~-~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~a  834 (1096)
T KOG1897|consen  756 DQNTFEVLSSHEFE-RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYA  834 (1096)
T ss_pred             cCCceeEEeecccc-ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceee
Confidence            76665544433221 1122233444668777 778888852          47888888877545544443332222232


Q ss_pred             EeecCCCCCEEEEEccCCeEEEEec
Q 009380          511 FHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +..  .++.+||+-+.  .|++|+.
T Consensus       835 L~~--fngkllA~In~--~vrLye~  855 (1096)
T KOG1897|consen  835 LVE--FNGKLLAGINQ--SVRLYEW  855 (1096)
T ss_pred             hhh--hCCeEEEecCc--EEEEEEc
Confidence            322  25667766654  5777653

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.12  Score=50.04  Aligned_cols=205  Identities=14%  Similarity=0.041  Sum_probs=112.9

Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---  364 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---  364 (536)
                      -.|.++...++.+--..+.|.-|+..++...... ....+.++.....+ ..|++ +.. .+.+++..++..+..+.   
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~p~~~~~~~~~d~~-g~Lv~-~~~-g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-SPGGFSSGALIDAG-GRLIA-CEH-GVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-CCCCcccceeecCC-CeEEE-Ecc-ccEEEeccCCceeEEecccc
Confidence            3567776345666667888999998877554433 33344444444333 24443 333 46677766555422222   


Q ss_pred             --ccCCCeEEEEEecCCCCEEEEEe-----C-----CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE
Q 009380          365 --LHEARINTIDFNPRNPNIMATSS-----T-----DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       365 --~h~~~i~~i~~~p~~~~~l~s~s-----~-----dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~  432 (536)
                        ......+.+...|+|..++-+-+     .     -|.|+.+|. .+.    .......+-..-+.|+||||++.|+.+
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~----~~~l~~~~~~~~NGla~SpDg~tly~a  180 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG----VVRLLDDDLTIPNGLAFSPDGKTLYVA  180 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC----EEEeecCcEEecCceEECCCCCEEEEE
Confidence              11245678888898843333322     1     133444443 211    222223445566889999999877776


Q ss_pred             eC-CCcEEEEeCCC--CC---cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-cEEEEcCCccccceeccCCcee
Q 009380          433 SF-DDTIGIWSGVN--FE---NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-TVEVISPAQRRSVATLQSPYIS  505 (536)
Q Consensus       433 s~-dg~I~iwd~~~--~~---~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-~I~v~d~~~~~~~~~l~~~~~~  505 (536)
                      .. .+.|.-|++..  +.   ....+......+..-.   ++...+|.+.+++-.+| .|.+|+.. ++++..+..+...
T Consensus       181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG---~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~  256 (307)
T COG3386         181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG---MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR  256 (307)
T ss_pred             eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc---eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCC
Confidence            65 47788887752  11   1111111111121111   33456777765555554 89999999 8888887765433

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.0014  Score=66.40  Aligned_cols=94  Identities=18%  Similarity=0.103  Sum_probs=76.4

Q ss_pred             CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee-EEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380          282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA  360 (536)
Q Consensus       282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~  360 (536)
                      ...|.-+.|+|.- .++|.+..+|.|.+..++-.+...+--++..++ ++||.|+| ++|++|-.||+|++.|+.++..+
T Consensus        20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCcc-chhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCce
Confidence            3568889999998 999999999999999888544444433666777 99999998 99999999999999999998877


Q ss_pred             eeEe-ccCCCeEEEEEec
Q 009380          361 TEWL-LHEARINTIDFNP  377 (536)
Q Consensus       361 ~~~~-~h~~~i~~i~~~p  377 (536)
                      ..+. .-...|.++.|.+
T Consensus        98 ~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eccccccccchheeeccc
Confidence            6632 3456788888875

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.20  E-value=0.17  Score=47.03  Aligned_cols=196  Identities=12%  Similarity=0.058  Sum_probs=112.2

Q ss_pred             EEeecCCC--ceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          318 DLVYSSEY--AVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       318 ~~~~~~~~--~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      ...+.|+.  -...+.|..++ .++-+.+.-|  .|+.+|+.+++......... ----.|+...  ..++.-.=.++..
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~  112 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTG  112 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEE
T ss_pred             EEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeE
Confidence            34455543  34567776555 4555666555  79999999998766655322 2234455553  2455555568899


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEcC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWGW  471 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~  471 (536)
                      .+||..+.+     ........+.=+.++  .++..|+.+.....|.++|..+++....+.... .+..+..+ .+.|- 
T Consensus       113 f~yd~~tl~-----~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i-  183 (264)
T PF05096_consen  113 FVYDPNTLK-----KIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYI-  183 (264)
T ss_dssp             EEEETTTTE-----EEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEE-
T ss_pred             EEEccccce-----EEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEE-
Confidence            999998753     334444455666777  467778888778889999999888777664322 12222211 12232 


Q ss_pred             CCCEEEEEcCCCcEEEEcCCccccceeccC---------Cc----eeeeeeeEeecCCCCCEEEEEc
Q 009380          472 DDSCVFIGNMTRTVEVISPAQRRSVATLQS---------PY----ISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~---------~~----~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      +|...|=.-....|...|..+|+++..+..         ..    ...+-.-++++|..+.+++||=
T Consensus       184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            565555555566777888888877554421         01    1234467899887767777763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.23  Score=46.25  Aligned_cols=327  Identities=12%  Similarity=0.110  Sum_probs=174.4

Q ss_pred             cccceecccc-cceeeeecCCCCcccccccccccccccccccceEEecccccCcc--ccccc-cCCceEEEEEEecCCcc
Q 009380          174 NLGFVIKDEF-NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE--NIARI-MPGRITQMKFLPCSDVR  249 (536)
Q Consensus       174 ~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~--~~~~~-~~~~I~~v~~~p~~~~~  249 (536)
                      .....+.||. ..|..+.....-......          ..---+.+|+......  .+... ..+-+..+.++.    +
T Consensus        32 ~v~~~~vghfg~~vsavdv~~~ya~v~qG----------~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse----~   97 (370)
T COG5276          32 HVGYAYVGHFGKGVSAVDVRGAYAYVGQG----------FILAILDITNVSLQTHDVLLSVINARDLFADVRVSE----E   97 (370)
T ss_pred             ccceEEeeeccCCcccccccccccccccC----------ceEeeccccCcccccCcceEEEEehhhhhheeEecc----c
Confidence            3445677777 666666665554444322          0000234455432221  12222 256677888865    6


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe---ec-CCC
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV---YS-SEY  325 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~---~~-~~~  325 (536)
                      ++..+..+.-++|.|+.+...  .....+-.-.+--.++..  .| ++.+.+..|.-+.+.|+.+...-.+   +. ...
T Consensus        98 yvyvad~ssGL~IvDIS~P~s--P~~~~~lnt~gyaygv~v--sG-n~aYVadlddgfLivdvsdpssP~lagrya~~~~  172 (370)
T COG5276          98 YVYVADWSSGLRIVDISTPDS--PTLIGFLNTDGYAYGVYV--SG-NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG  172 (370)
T ss_pred             EEEEEcCCCceEEEeccCCCC--cceeccccCCceEEEEEe--cC-CEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence            777777888899999997542  222222222233344444  45 7888888666677889876432222   22 223


Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD  403 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~  403 (536)
                      ....++.+  | ++.+++..|+.+.+.|+.....-.-+.  .....+.++..+++. -+++..  +--+.+-|....+  
T Consensus       173 d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr-~y~vvy--~egvlivd~s~~s--  244 (370)
T COG5276         173 DTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNR-AYLVVY--DEGVLIVDVSGPS--  244 (370)
T ss_pred             CceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCe-eEEEEc--ccceEEEecCCCC--
Confidence            33556665  3 688889999999999998764322111  123367888888733 233333  3447777877643  


Q ss_pred             CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          404 KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       404 ~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                      .+..+.......++.--.+.-.+++......+.-+.+-|+.+........+-...+.....+    .-.+.++..+..+ 
T Consensus       245 sp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi----~ay~~y~yiadkn-  319 (370)
T COG5276         245 SPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGI----RAYGNYNYIADKN-  319 (370)
T ss_pred             CceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccce----EEecCeeEeccCC-
Confidence            12233333333332221233357777777777778888877654443332222111111111    1134455555544 


Q ss_pred             cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          484 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       484 ~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ...+.+....+.+....+.......+.+...   .+.+.+...+|-+.||+.
T Consensus       320 ~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~---~q~~y~~d~~~gl~i~~~  368 (370)
T COG5276         320 TGAVVDASPPSMMDKRPGRPTIGQSCDVSVD---TQIIYSTDYNGGLSIIEY  368 (370)
T ss_pred             ceEEEeCCChhhcccccCcceEeeecceEEE---eeEEEEeecCCCEEEEEe
Confidence            4444555444333333332222223344442   357888899999999974

>smart00320 WD40 WD40 repeats

Probab=97.10  E-value=0.0012  Score=40.76  Aligned_cols=38  Identities=21%  Similarity=0.373  Sum_probs=33.7

Q ss_pred             CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      .....+..|...|.++.|++.+ ..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            4566777899999999999988 8999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.09  E-value=0.0013  Score=40.60  Aligned_cols=38  Identities=26%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380          358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWD  396 (536)
Q Consensus       358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd  396 (536)
                      +++..+..|...|.++.|++.+ .++++++.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence            3456667788999999999976 7999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PHA02713 hypothetical protein; Provisional

Probab=97.09  E-value=0.032  Score=59.08  Aligned_cols=184  Identities=8%  Similarity=0.023  Sum_probs=92.6

Q ss_pred             CEEEEEECC------CeEEEEECCCCeEEEeecCCCc--eeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccc--
Q 009380          296 SKIFTSCYD------GLIRLMDAEKEVFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSA--  360 (536)
Q Consensus       296 ~~l~s~s~d------g~I~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~--  360 (536)
                      ..++.|+.+      ..+..||..+........-..+  -.+++.. ++ .+.+.|+.++     .+..||..+.+-.  
T Consensus       305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-DD-TIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-CC-EEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            666777753      3477889888765443322111  1122222 23 5677777654     4888998865321  


Q ss_pred             eeEeccCCCeEEEEEecCCCCEEEEEeCCC-----------------------cEEEEeCCCCCCCCCCcceeecccCce
Q 009380          361 TEWLLHEARINTIDFNPRNPNIMATSSTDG-----------------------TACIWDLRSMATDKPEPMKVLSHKRAV  417 (536)
Q Consensus       361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-----------------------~i~iwdl~~~~~~~~~~~~~~~~~~~v  417 (536)
                      ..+.........+.+  ++ .+.+.|+.++                       .+..||..+.+-..  ...........
T Consensus       383 ~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~--v~~m~~~r~~~  457 (557)
T PHA02713        383 PDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET--LPNFWTGTIRP  457 (557)
T ss_pred             CCCCcccccccEEEE--CC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee--cCCCCcccccC
Confidence            111111111122222  24 6777777553                       47778877643111  11111111111


Q ss_pred             eEEEEccCCCeEEEEeCCC------cEEEEeCCC-C--CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC--cEE
Q 009380          418 HSAYFSPSGSSLATTSFDD------TIGIWSGVN-F--ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR--TVE  486 (536)
Q Consensus       418 ~~l~~sp~g~~l~t~s~dg------~I~iwd~~~-~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg--~I~  486 (536)
                      ..+.+  +|+..+.|+.++      .+..||..+ .  .....+...    +....  + -.-+|.+.++|+.++  .+.
T Consensus       458 ~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~----r~~~~--~-~~~~~~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        458 GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR----LSALH--T-ILHDNTIMMLHCYESYMLQD  528 (557)
T ss_pred             cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc----cccce--e-EEECCEEEEEeeecceeehh
Confidence            12222  567777777542      367888775 2  222222111    11111  1 122678888998887  788


Q ss_pred             EEcCCcccc
Q 009380          487 VISPAQRRS  495 (536)
Q Consensus       487 v~d~~~~~~  495 (536)
                      .||..+.+-
T Consensus       529 ~yd~~~~~W  537 (557)
T PHA02713        529 TFNVYTYEW  537 (557)
T ss_pred             hcCcccccc
Confidence            888877643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.09  E-value=0.051  Score=53.72  Aligned_cols=204  Identities=11%  Similarity=0.070  Sum_probs=97.1

Q ss_pred             CccEEEEEe-CCCcEEEEECCCCCCCCCceEEecc---CC----CCEEEEEEecCCCCEEEEEEC------CCeEEEEEC
Q 009380          247 DVRMVVAGS-KLGNITFWNLDSQQDEDNGIYLFRT---HL----GPISGIVTQQYCLSKIFTSCY------DGLIRLMDA  312 (536)
Q Consensus       247 ~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~~---h~----~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~  312 (536)
                      +.++|+..+ ..+.|+|.|+.+........+.+..   +.    ..-..+...|+| ..++|+-.      -|-+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence            456777666 6789999999865443344444432   11    112334455777 78887633      255777787


Q ss_pred             CCCeEEEeecC----CCceeEEEecCCCCCEEEEEEC--------------------CCeEEEEECCCCccceeEeccCC
Q 009380          313 EKEVFDLVYSS----EYAVFSLSQQPNNVNTLYFGEG--------------------QGGLNIWDVRSRKSATEWLLHEA  368 (536)
Q Consensus       313 ~~~~~~~~~~~----~~~i~~l~~~~~~~~~l~~g~~--------------------dg~i~i~d~~~~~~~~~~~~h~~  368 (536)
                      ++-.+.-....    ..--..+-|.|.. +.+++...                    ..++.+||+.+.+.++++..-..
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            76544433322    2334566777876 67777543                    34799999999999999884432


Q ss_pred             --CeEEEEEe--cCCCCEEEEEeCCCcEEEEeC-CCCCCCCCCcceee-----------------cccCceeEEEEccCC
Q 009380          369 --RINTIDFN--PRNPNIMATSSTDGTACIWDL-RSMATDKPEPMKVL-----------------SHKRAVHSAYFSPSG  426 (536)
Q Consensus       369 --~i~~i~~~--p~~~~~l~s~s~dg~i~iwdl-~~~~~~~~~~~~~~-----------------~~~~~v~~l~~sp~g  426 (536)
                        ....|.|.  |+...-|+.+....+|..|-- ..++-....+..+.                 .-..-|+.|..|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence              24456665  434334555555555555533 22210001111111                 113457999999999


Q ss_pred             CeEEEEe-CCCcEEEEeCCCCCcceEE
Q 009380          427 SSLATTS-FDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       427 ~~l~t~s-~dg~I~iwd~~~~~~~~~~  452 (536)
                      ++|..++ .+|.|+.||+.+.......
T Consensus       324 rfLYvs~W~~GdvrqYDISDP~~Pkl~  350 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISDPFNPKLV  350 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred             CEEEEEcccCCcEEEEecCCCCCCcEE
Confidence            9998887 5899999999876554443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.07  E-value=0.41  Score=48.22  Aligned_cols=147  Identities=15%  Similarity=0.163  Sum_probs=92.9

Q ss_pred             cCCCCEEEEEECCCeEEEEECCCCe-----EEEeecCCCceeEEEecC---C-CCCEEEEEECCCeEEEEECCC--Cc--
Q 009380          292 QYCLSKIFTSCYDGLIRLMDAEKEV-----FDLVYSSEYAVFSLSQQP---N-NVNTLYFGEGQGGLNIWDVRS--RK--  358 (536)
Q Consensus       292 ~~~~~~l~s~s~dg~I~vwd~~~~~-----~~~~~~~~~~i~~l~~~~---~-~~~~l~~g~~dg~i~i~d~~~--~~--  358 (536)
                      +++...|++||..|.++||+.....     .........+|..+..-.   . ..+.|++ -.-..+.+|.+..  +.  
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            4455799999999999999986543     223334567888887643   2 2234444 5556888888742  11  


Q ss_pred             -----cceeEeccC--CCeEEEEEecCC----CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380          359 -----SATEWLLHE--ARINTIDFNPRN----PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS  427 (536)
Q Consensus       359 -----~~~~~~~h~--~~i~~i~~~p~~----~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~  427 (536)
                           .+..+..|.  .....+++-|-|    ..++..-+.||.+.+|+-+..     ........---.-.+.|.+.-.
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-----~f~~~lp~~llPgPl~Y~~~tD  187 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-----AFSRFLPDFLLPGPLCYCPRTD  187 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-----EEEEEcCCCCCCcCeEEeecCC
Confidence                 112222232  334445554432    368889999999999997652     1112222222334478888888


Q ss_pred             eEEEEeCCCcEEEEeCC
Q 009380          428 SLATTSFDDTIGIWSGV  444 (536)
Q Consensus       428 ~l~t~s~dg~I~iwd~~  444 (536)
                      .|++++.+..|..|...
T Consensus       188 sfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  188 SFVTASSSWTLECYKYQ  204 (418)
T ss_pred             EEEEecCceeEEEecHH
Confidence            89999999999999753

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.03  E-value=0.33  Score=48.75  Aligned_cols=88  Identities=22%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEE-------c----C-CCCEEEE-
Q 009380          413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIW-------G----W-DDSCVFI-  478 (536)
Q Consensus       413 ~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------s----~-~g~~l~~-  478 (536)
                      ....+.+++.+|++++.++...=|.|.++|+.++..++..+.- .....|+......-       +    + ...+|++ 
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy  385 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY  385 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence            4456889999999998888878899999999887766655311 11111221110000       0    0 0123333 


Q ss_pred             EcCCCcEEEEcCCccccceecc
Q 009380          479 GNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       479 gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      .-.-|.|.||.+..|..+..+.
T Consensus       386 aprRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  386 APRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             eccCCeEEEEecCCCCEEEEEE
Confidence            4556889999999987776664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.32  Score=45.16  Aligned_cols=236  Identities=12%  Similarity=0.119  Sum_probs=124.4

Q ss_pred             EEEEecCCCCEEEEEECCCe-EEEEECCCCeEEEeec-CC--CceeEEEecCCCCCEEEEEECC-----CeEEEEECCCC
Q 009380          287 GIVTQQYCLSKIFTSCYDGL-IRLMDAEKEVFDLVYS-SE--YAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSR  357 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg~-I~vwd~~~~~~~~~~~-~~--~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~  357 (536)
                      .|.|+|..+.-++.+-.-|+ ..++|.++.....+.. .+  .---.=+|+|++ .+|+..-.|     |.|-|||.+.+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG-~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG-RLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC-cEEEeecCCCCCCCceEEEEecccc
Confidence            57777776666666666554 4577887654322221 10  111123689998 788776543     78999999854


Q ss_pred             -ccceeEeccCCCeEEEEEecCCCCEEEEEeC------------------CCcEEEEeCCCCCCCCCCcceeecccCcee
Q 009380          358 -KSATEWLLHEARINTIDFNPRNPNIMATSST------------------DGTACIWDLRSMATDKPEPMKVLSHKRAVH  418 (536)
Q Consensus       358 -~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~------------------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~  418 (536)
                       +.+.++..|.-.-..+.|.+|| ..++.+..                  .-.+.+.|..+++-.....+....+..+|.
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DG-rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR  229 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADG-RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR  229 (366)
T ss_pred             cceecccccCCcCcceeEEecCC-cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence             3467788888888899999998 45555431                  112333343333211111222223566789


Q ss_pred             EEEEccCCCeEEEEeCCCc-----EEEEeCCCCCcceEEeccCC----CCceeeeeEEEEcCCCCEEEEEcC-CCcEEEE
Q 009380          419 SAYFSPSGSSLATTSFDDT-----IGIWSGVNFENTSMIHHNNQ----TGRWISSFRAIWGWDDSCVFIGNM-TRTVEVI  488 (536)
Q Consensus       419 ~l~~sp~g~~l~t~s~dg~-----I~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~  488 (536)
                      .++..+||..++.+-+.|.     --+=-...++++..+.....    ....+..  ++.+.+..+++..+. .+...+|
T Consensus       230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs--iA~n~~~glV~lTSP~GN~~vi~  307 (366)
T COG3490         230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS--IAANRRDGLVALTSPRGNRAVIW  307 (366)
T ss_pred             eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh--eeecccCCeEEEecCCCCeEEEE
Confidence            9999999986655544332     00111122233322211100    0011122  222333345444444 4567899


Q ss_pred             cCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          489 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       489 d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      |..+|..+..-.-.....    +..   ...-++..+.+|.+.++
T Consensus       308 da~tG~vv~~a~l~daaG----va~---~~~gf~vssg~G~~~~~  345 (366)
T COG3490         308 DAATGAVVSEAALPDAAG----VAA---AKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             EcCCCcEEeccccccccc----cee---ccCceEEecCCceEEec
Confidence            999997765433221111    111   12445555666777654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.94  E-value=0.091  Score=55.65  Aligned_cols=232  Identities=13%  Similarity=0.101  Sum_probs=120.4

Q ss_pred             CccEEEEEeCCC------cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC------CeEEEEECCC
Q 009380          247 DVRMVVAGSKLG------NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD------GLIRLMDAEK  314 (536)
Q Consensus       247 ~~~~l~tg~~dg------~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d------g~I~vwd~~~  314 (536)
                      .+.+++.|+.++      .+..||..+..  ......+. +...-.+++...+  ...++|+.|      .++..||..+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~--w~~~a~m~-~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNE--WSSLAPMP-SPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCc--EeecCCCC-cccccccEEEECC--EEEEEccccCCCcccceEEEecCCC
Confidence            456777777764      56777777632  12222222 2333445555543  678888888      3577888888


Q ss_pred             CeEEEeecCCCceeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380          315 EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       315 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      .+......-...=..+....-++.+.++|+.||     +|-.||..+.+--..-. ......+.....-++.+.++|+.+
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~  437 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGD  437 (571)
T ss_pred             CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcC
Confidence            776554332221111222112236788888886     47788887654321111 111222222222234788888855


Q ss_pred             C------cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCc-----EEEEeCCCCCcceEEeccCCC
Q 009380          390 G------TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-----IGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       390 g------~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-----I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      +      ++..||..+..-....+....  ......+.+  ++.+.+.||.|+.     |..||..+.+-...-.-  ..
T Consensus       438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~--R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m--~~  511 (571)
T KOG4441|consen  438 GSSNCLNSVECYDPETNTWTLIAPMNTR--RSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM--TS  511 (571)
T ss_pred             CCccccceEEEEcCCCCceeecCCcccc--cccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccC--cc
Confidence            4      467888887642222222211  111112222  5778888887763     77788765443222100  01


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCcc
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQR  493 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~  493 (536)
                      .+...   ....-++...++|+.|+     +|..||..+.
T Consensus       512 ~rs~~---g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  512 PRSAV---GVVVLGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             ccccc---cEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence            10000   01123567788888775     4677766554

>PHA02713 hypothetical protein; Provisional

Probab=96.92  E-value=0.045  Score=58.02  Aligned_cols=187  Identities=8%  Similarity=0.086  Sum_probs=94.3

Q ss_pred             CccEEEEEeCC------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-----eEEEEECCCC
Q 009380          247 DVRMVVAGSKL------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-----LIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~~~  315 (536)
                      ++.+++.|+.+      ..+..||..+..  ...+..+....... +++. -++ ...+.||.++     ++..||..+.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~-~~~~-~~g-~IYviGG~~~~~~~~sve~Ydp~~~  377 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRF-SLAV-IDD-TIYAIGGQNGTNVERTIECYTMGDD  377 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhce-eEEE-ECC-EEEEECCcCCCCCCceEEEEECCCC
Confidence            66788888754      246778876532  11111111111111 2222 234 6667777654     4888999887


Q ss_pred             eEEEeecCCCcee--EEEecCCCCCEEEEEECCC-----------------------eEEEEECCCCccc--eeEeccCC
Q 009380          316 VFDLVYSSEYAVF--SLSQQPNNVNTLYFGEGQG-----------------------GLNIWDVRSRKSA--TEWLLHEA  368 (536)
Q Consensus       316 ~~~~~~~~~~~i~--~l~~~~~~~~~l~~g~~dg-----------------------~i~i~d~~~~~~~--~~~~~h~~  368 (536)
                      ..........+..  +++.. ++ .+.++|+.++                       .+..||..+.+-.  ..+.....
T Consensus       378 ~W~~~~~mp~~r~~~~~~~~-~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~  455 (557)
T PHA02713        378 KWKMLPDMPIALSSYGMCVL-DQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI  455 (557)
T ss_pred             eEEECCCCCcccccccEEEE-CC-EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence            7655433222111  11211 33 5666676542                       4777888765432  11111111


Q ss_pred             CeEEEEEecCCCCEEEEEeCC------CcEEEEeCCC-CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--cEE
Q 009380          369 RINTIDFNPRNPNIMATSSTD------GTACIWDLRS-MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIG  439 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~d------g~i~iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--~I~  439 (536)
                      . .+++... + .+.+.|+.+      ..+..||..+ .+-.  ....+.........+.+  +|++.++|+.|+  .+.
T Consensus       456 ~-~~~~~~~-~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~--~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e  528 (557)
T PHA02713        456 R-PGVVSHK-D-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWE--LITTTESRLSALHTILH--DNTIMMLHCYESYMLQD  528 (557)
T ss_pred             c-CcEEEEC-C-EEEEEeCCCCCCccceeEEEecCCCCCCee--EccccCcccccceeEEE--CCEEEEEeeecceeehh
Confidence            1 1233332 3 577777654      2467899886 3311  11111122223333333  688889999888  677


Q ss_pred             EEeCCCCC
Q 009380          440 IWSGVNFE  447 (536)
Q Consensus       440 iwd~~~~~  447 (536)
                      .||..+.+
T Consensus       529 ~yd~~~~~  536 (557)
T PHA02713        529 TFNVYTYE  536 (557)
T ss_pred             hcCccccc
Confidence            77765543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.89  E-value=0.32  Score=52.72  Aligned_cols=74  Identities=15%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCC----------Ccc---ceeE--------eccCCCeEEEEEecCC--CC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----------RKS---ATEW--------LLHEARINTIDFNPRN--PN  381 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----------~~~---~~~~--------~~h~~~i~~i~~~p~~--~~  381 (536)
                      -.|..+.++++| .+++..+..| |.|..+..          ++.   .+++        ..+...|..+.|||.+  ..
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            468889999999 6777777654 55554421          111   1111        1234578999999974  35


Q ss_pred             EEEEEeCCCcEEEEeCCCC
Q 009380          382 IMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~  400 (536)
                      .|+.-..|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            6777777999999999764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.88  E-value=0.0014  Score=58.29  Aligned_cols=144  Identities=15%  Similarity=0.116  Sum_probs=80.0

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTID  374 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~  374 (536)
                      ..|..-+.||.|+-+++...+.....  ...+.+..--+.....+++|+.+|.|.+|...-. .....+..-...|-++-
T Consensus        31 ~~l~~~sa~~~v~~~~~~k~k~s~rs--e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   31 HLLRATSADGLVRERKVRKHKESCRS--ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hhhccccCCcccccchhhhhhhhhhh--hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            34555567888888887654321111  1111111112222367999999999999988632 21112222223343333


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc-CceeEEEEccCCCeEEEE--eCCCcEEEEeCCC
Q 009380          375 FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK-RAVHSAYFSPSGSSLATT--SFDDTIGIWSGVN  445 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~-~~v~~l~~sp~g~~l~t~--s~dg~I~iwd~~~  445 (536)
                      -.-+...+..+++.||.|+.|++.-.+    ..-....|. .++..+..+..+..++.+  |.|..++.|++..
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k----~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNK----VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCc----eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            332233589999999999999987642    222222454 455555555555556655  6666666676653

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.80  E-value=0.2  Score=54.75  Aligned_cols=194  Identities=11%  Similarity=0.082  Sum_probs=108.8

Q ss_pred             CEEEEEECCCeEEEEECCCCccceeEeccCCC--------eEEEEEecC---------------CCCEEEEEeCCCcEEE
Q 009380          338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR--------INTIDFNPR---------------NPNIMATSSTDGTACI  394 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~--------i~~i~~~p~---------------~~~~l~s~s~dg~i~i  394 (536)
                      ..+++++.++.|.-+|..+|+.+.++......        ...+.+...               ....++.++.|+.|.-
T Consensus       195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA  274 (764)
T TIGR03074       195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA  274 (764)
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence            47788888888888898888877666532210        122333211               1136777888999999


Q ss_pred             EeCCCCCCCCCCcceeecccCce-------------eEEEEcc--CCCeEEEEeC----------CCcEEEEeCCCCCcc
Q 009380          395 WDLRSMATDKPEPMKVLSHKRAV-------------HSAYFSP--SGSSLATTSF----------DDTIGIWSGVNFENT  449 (536)
Q Consensus       395 wdl~~~~~~~~~~~~~~~~~~~v-------------~~l~~sp--~g~~l~t~s~----------dg~I~iwd~~~~~~~  449 (536)
                      .|.++++    .+ -.++..+.|             ..+.-.|  .+..+++++.          +|.|+-||..+++..
T Consensus       275 LDA~TGk----~~-W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       275 LDADTGK----LC-EDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             EECCCCC----EE-EEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            9999875    22 111211111             1122223  2445666643          688999999999988


Q ss_pred             eEEeccCCC-------Cc-eeee-----eEEEEcCCCCEEEEEc------------------CCCcEEEEcCCcccccee
Q 009380          450 SMIHHNNQT-------GR-WISS-----FRAIWGWDDSCVFIGN------------------MTRTVEVISPAQRRSVAT  498 (536)
Q Consensus       450 ~~~~~~~~~-------~~-~~~~-----~~~~~s~~g~~l~~gs------------------~dg~I~v~d~~~~~~~~~  498 (536)
                      ..+....+.       +. +...     ...++++....++.+.                  ..+.|.-.|..+|+....
T Consensus       350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~  429 (764)
T TIGR03074       350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV  429 (764)
T ss_pred             eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence            776532111       00 0000     0133444444444432                  124577778889988887


Q ss_pred             ccCCceeeee-------eeEeecCCCC---CEEEEEccCCeEEEEecC
Q 009380          499 LQSPYISAIP-------CRFHAHPHQV---GTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       499 l~~~~~~~~~-------~~~~~~p~~~---~~lasgs~Dg~v~iW~~d  536 (536)
                      ++..|.....       .-+...-.++   ..++.++.+|.+++.|.+
T Consensus       430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~  477 (764)
T TIGR03074       430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRR  477 (764)
T ss_pred             ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECC
Confidence            7763322211       1111111133   278999999999998853

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.77  E-value=0.019  Score=57.23  Aligned_cols=139  Identities=12%  Similarity=0.136  Sum_probs=95.9

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC------CEEEEEECCCeEEEEECCCC---eEEEe
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL------SKIFTSCYDGLIRLMDAEKE---VFDLV  320 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~------~~l~s~s~dg~I~vwd~~~~---~~~~~  320 (536)
                      +|.++.....|+-.|++.    ++.+..+.-|.. |+-+.+.|+..      ..-+.|-.|..|.-||.+-.   ++...
T Consensus       348 il~~~~~~~~l~klDIE~----GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIER----GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             EeeCCCCcCcceeeeccc----ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            344555556677777776    788888888877 77777877641      22345666888999998732   22222


Q ss_pred             e----cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          321 Y----SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       321 ~----~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                      .    .......|++-..+|  ++++|+.+|.|++||- .+.. -..+.+...+|..|..+.+|..+|+||  +..+.+-
T Consensus       423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi  497 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLI  497 (644)
T ss_pred             eccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEE
Confidence            2    233456676666665  8999999999999997 4444 445667889999999999996555554  5677777


Q ss_pred             eCC
Q 009380          396 DLR  398 (536)
Q Consensus       396 dl~  398 (536)
                      ++.
T Consensus       498 ~t~  500 (644)
T KOG2395|consen  498 DTL  500 (644)
T ss_pred             EEe
Confidence            754

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.69  E-value=0.2  Score=53.21  Aligned_cols=152  Identities=11%  Similarity=0.055  Sum_probs=84.6

Q ss_pred             CCCEEEEEEecCCCCEEEEEE------CC--CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC--------
Q 009380          282 LGPISGIVTQQYCLSKIFTSC------YD--GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG--------  345 (536)
Q Consensus       282 ~~~V~~l~~~~~~~~~l~s~s------~d--g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~--------  345 (536)
                      ...+...+++|++ ..++..-      .|  ..|.+++..... ..+.. ....+.-.|+|++ ..|++...        
T Consensus       349 ~~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWspDG-~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        349 MGNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWSLDA-DAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceECCCC-CceEEEecCcceEEEe
Confidence            3467889999999 6555443      23  356666653333 33322 2347888999997 44444432        


Q ss_pred             ----CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE---EeCCCCCCCCCCcceee-cccCce
Q 009380          346 ----QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI---WDLRSMATDKPEPMKVL-SHKRAV  417 (536)
Q Consensus       346 ----dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i---wdl~~~~~~~~~~~~~~-~~~~~v  417 (536)
                          .+.+.+.++..+....   .....|..+.|+|||..+++..  +|.|++   -....+......+..+. .....+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                2344444554443322   2356799999999996544444  477776   33233221111112222 233446


Q ss_pred             eEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          418 HSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       418 ~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                      .++.|..++.++ ++..++...+|.+
T Consensus       500 ~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        500 VSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             ccceEecCCEEE-EEecCCCCceEEE
Confidence            889999988854 5554444444543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.67  E-value=0.04  Score=59.59  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEY  325 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~  325 (536)
                      -+..++.|+..|+|...|+...   -.....-..-.++|++++|+.+| ..++.|-.+|.|.+||+..++....+ .+..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n---L~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN---LGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc---cchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            3457999999999999888752   11122223346889999999999 99999999999999999987655443 3333


Q ss_pred             ---ceeEEEecCCCCCEEEEEECCCe
Q 009380          326 ---AVFSLSQQPNNVNTLYFGEGQGG  348 (536)
Q Consensus       326 ---~i~~l~~~~~~~~~l~~g~~dg~  348 (536)
                         .|..+.+..++ ..++++...|.
T Consensus       174 p~t~vi~v~~t~~n-S~llt~D~~Gs  198 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQN-SKLLTSDTGGS  198 (1206)
T ss_pred             ccceEEEEEEeCCC-cEEEEccCCCc
Confidence               34444444444 46777777776

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.66  E-value=0.0023  Score=56.96  Aligned_cols=103  Identities=15%  Similarity=0.155  Sum_probs=63.2

Q ss_pred             CEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeEE
Q 009380          296 SKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINT  372 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~  372 (536)
                      ..++.|+.+|.|.+|.....  .+.........|.++--.-+...+.++++.+|.|+.|++.-++.+.....|. ..+..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~  150 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE  150 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence            78999999999999998732  1111222233444433333333689999999999999998877766666666 33333


Q ss_pred             EEEecCCCCEEEEE--eCCCcEEEEeCCC
Q 009380          373 IDFNPRNPNIMATS--STDGTACIWDLRS  399 (536)
Q Consensus       373 i~~~p~~~~~l~s~--s~dg~i~iwdl~~  399 (536)
                      ......+ .+++.+  |.|..++.|++..
T Consensus       151 ~ivv~sd-~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  151 LIVVGSD-EFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eEEecCC-ceEEeeccccchhhhhcchhh
Confidence            3333323 344444  5555566666554

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.66  E-value=0.18  Score=53.56  Aligned_cols=188  Identities=11%  Similarity=0.083  Sum_probs=101.6

Q ss_pred             CceEEEEEEecCCccEEEEEe------CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----
Q 009380          235 GRITQMKFLPCSDVRMVVAGS------KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----  304 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~------~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----  304 (536)
                      ..+.+.+++|  +|..++...      .|+.-.||-...+   ........+.  ..+.-.|+|+| ..|++.+..    
T Consensus       350 ~~vsspaiSp--dG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g~--~~t~PsWspDG-~~lw~v~dg~~~~  421 (591)
T PRK13616        350 GNITSAALSR--SGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEGH--SLTRPSWSLDA-DAVWVVVDGNTVV  421 (591)
T ss_pred             cCcccceECC--CCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecCC--CCCCceECCCC-CceEEEecCcceE
Confidence            4678999999  888887665      2443344433321   2222222332  37788999998 666666432    


Q ss_pred             --------CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEE---EECCCCcc-c---eeEe-ccCC
Q 009380          305 --------GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI---WDVRSRKS-A---TEWL-LHEA  368 (536)
Q Consensus       305 --------g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i---~d~~~~~~-~---~~~~-~h~~  368 (536)
                              +.+.+.++..+....  .....|..+.|+|+| ..++... +|.|++   -....|.. +   ..+. .-..
T Consensus       422 ~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~  497 (591)
T PRK13616        422 RVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD  497 (591)
T ss_pred             EEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence                    233333444443322  335679999999999 4544444 477877   44334431 1   1122 2233


Q ss_pred             CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380          369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG  439 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~  439 (536)
                      .+.++.|.+++.  |+++..++...+|.+.-... .............+.+|+-+++  .|+....++.+.
T Consensus       498 ~~~~l~W~~~~~--L~V~~~~~~~~v~~v~vDG~-~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        498 TAVSLDWRTGDS--LVVGRSDPEHPVWYVNLDGS-NSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             ccccceEecCCE--EEEEecCCCCceEEEecCCc-cccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            468899999773  44555555445555433211 1111111123566777777763  355556666333

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.58  E-value=0.44  Score=44.61  Aligned_cols=159  Identities=13%  Similarity=0.131  Sum_probs=102.1

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      ....|.++.|+|  +.+.|++......-.||=...    +..+.++.-. -.---.|.+..++ .+.++--.++.+.++.
T Consensus        84 ~~~nvS~LTynp--~~rtLFav~n~p~~iVElt~~----GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~  156 (316)
T COG3204          84 ETANVSSLTYNP--DTRTLFAVTNKPAAIVELTKE----GDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFT  156 (316)
T ss_pred             ccccccceeeCC--CcceEEEecCCCceEEEEecC----CceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEE
Confidence            344599999999  777777777666655554433    5555544321 1223467787776 7777777788888887


Q ss_pred             CCCCeEE-------Ee---ecC-CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeEecc-------CCCe
Q 009380          312 AEKEVFD-------LV---YSS-EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLH-------EARI  370 (536)
Q Consensus       312 ~~~~~~~-------~~---~~~-~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h-------~~~i  370 (536)
                      +......       ..   ..+ +...-.++|.|.+ ..|+++-.-.-+.||.+.....   +.....+       -..|
T Consensus       157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            7644111       11   122 5678899999998 6777777766777777653321   1111111       2357


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          371 NTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       371 ~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      .++.|++...++++-+.+++.+.-.|...
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecCC
Confidence            78888887767888888888888887765

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.58  E-value=0.1  Score=55.26  Aligned_cols=215  Identities=12%  Similarity=0.074  Sum_probs=114.7

Q ss_pred             CEEEEEECC------CeEEEEECCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECC------CeEEEEECCCCccce
Q 009380          296 SKIFTSCYD------GLIRLMDAEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSAT  361 (536)
Q Consensus       296 ~~l~s~s~d------g~I~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~  361 (536)
                      .+++.|+.+      ..+..+|..++.......  ....-.+++...+  .+.++|+.|      .++..||.++.+-..
T Consensus       286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~--~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG--KLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             eEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC--EEEEEccccCCCcccceEEEecCCCCceec
Confidence            567777776      367888988886554433  3333455555544  577888888      357889988776322


Q ss_pred             --eEeccCCCeEEEEEecCCCCEEEEEeCCCc-----EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC
Q 009380          362 --EWLLHEARINTIDFNPRNPNIMATSSTDGT-----ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF  434 (536)
Q Consensus       362 --~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~-----i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~  434 (536)
                        .+....... +++..  ++.+.|+|+.||.     |-.||..+.+-..  ...........-.+.+  +|.+.++||.
T Consensus       364 ~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~--va~m~~~r~~~gv~~~--~g~iYi~GG~  436 (571)
T KOG4441|consen  364 VAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP--VAPMLTRRSGHGVAVL--GGKLYIIGGG  436 (571)
T ss_pred             cCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccc--cCCCCcceeeeEEEEE--CCEEEEEcCc
Confidence              111111111 22222  3478899998864     7778887753111  1111111122222222  6888888886


Q ss_pred             CC------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCcccccee--ccC
Q 009380          435 DD------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQRRSVAT--LQS  501 (536)
Q Consensus       435 dg------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~~~~~~--l~~  501 (536)
                      ++      ++..||..+..-...-.-  ...+.-..  + -.-++.++++|+.|+     .|..||..+.+-...  +..
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M--~~~R~~~g--~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPM--NTRRSGFG--V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCc--ccccccce--E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            54      467888765432221111  11111111  1 123677888888776     378899877643221  221


Q ss_pred             CceeeeeeeEeecCCCCCEEEEEccCCe
Q 009380          502 PYISAIPCRFHAHPHQVGTLAGATGGGQ  529 (536)
Q Consensus       502 ~~~~~~~~~~~~~p~~~~~lasgs~Dg~  529 (536)
                      ......  ....   ++...+.|+.||.
T Consensus       512 ~rs~~g--~~~~---~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  512 PRSAVG--VVVL---GGKLYAVGGFDGN  534 (571)
T ss_pred             cccccc--EEEE---CCEEEEEecccCc
Confidence            111111  1222   4577788887775

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.45  E-value=0.18  Score=46.69  Aligned_cols=186  Identities=17%  Similarity=0.108  Sum_probs=108.0

Q ss_pred             EEEecCCccEEEEEeC-----CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE------
Q 009380          241 KFLPCSDVRMVVAGSK-----LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL------  309 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v------  309 (536)
                      .|||  ||.+|.+.-.     -|.|.|||....   ...+-.+..|.-.-..+.|.+|| ..++.+.  |-|..      
T Consensus       120 vfs~--dG~~LYATEndfd~~rGViGvYd~r~~---fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIethpdfgR  191 (366)
T COG3490         120 VFSP--DGRLLYATENDFDPNRGVIGVYDAREG---FQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETHPDFGR  191 (366)
T ss_pred             ccCC--CCcEEEeecCCCCCCCceEEEEecccc---cceecccccCCcCcceeEEecCC-cEEEEeC--CceecccccCc
Confidence            6899  9999887643     378999999854   56778888888888899999999 7777663  32333      


Q ss_pred             --------------EECCCCeEEEee-----cCCCceeEEEecCCCCCEEEEEECCCe-----EEEEECCCCccceeEe-
Q 009380          310 --------------MDAEKEVFDLVY-----SSEYAVFSLSQQPNNVNTLYFGEGQGG-----LNIWDVRSRKSATEWL-  364 (536)
Q Consensus       310 --------------wd~~~~~~~~~~-----~~~~~i~~l~~~~~~~~~l~~g~~dg~-----i~i~d~~~~~~~~~~~-  364 (536)
                                    .|..++.++...     .+...|..++..+++ ..++.+-..|.     -.+=-.+.++.+.-+. 
T Consensus       192 ~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~  270 (366)
T COG3490         192 TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL  270 (366)
T ss_pred             cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCCcCcccCC
Confidence                          332333221111     123456777777776 33333322221     1111112333333332 


Q ss_pred             ------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380          365 ------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       365 ------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                            .....|-+|+.+.+...+.+|+=.-+...+||..++.     +.... .-..+..+.-  ...-|++.+.+|.+
T Consensus       271 pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~-----vv~~a-~l~daaGva~--~~~gf~vssg~G~~  342 (366)
T COG3490         271 PEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA-----VVSEA-ALPDAAGVAA--AKGGFAVSSGQGRI  342 (366)
T ss_pred             CHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc-----EEecc-ccccccccee--ccCceEEecCCceE
Confidence                  2335678889887664445555455667899999874     21111 1112222333  33447777888999


Q ss_pred             EEEeC
Q 009380          439 GIWSG  443 (536)
Q Consensus       439 ~iwd~  443 (536)
                      .++.-
T Consensus       343 ~~~s~  347 (366)
T COG3490         343 IFYSR  347 (366)
T ss_pred             Eeccc
Confidence            88853

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.43  E-value=0.71  Score=50.51  Aligned_cols=190  Identities=9%  Similarity=0.077  Sum_probs=96.6

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCCCcee-------------EEEecC--CCCCEEEEEEC----------CCeEE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-------------SLSQQP--NNVNTLYFGEG----------QGGLN  350 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-------------~l~~~~--~~~~~l~~g~~----------dg~i~  350 (536)
                      ..|+.++.|+.|.-.|.++|+....+..++.|.             .+.-.|  .+ ..+++|+.          +|.|+
T Consensus       261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcEEE
Confidence            588899999999999999998877665444331             011111  12 46777753          68899


Q ss_pred             EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE
Q 009380          351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l  429 (536)
                      -+|.++|+.+..+..-.......  .+.+ .....++.+. ...-+|...+     .+  .......  +..+....+..
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~--~~~g-~~~~~gg~n~W~~~s~D~~~g-----lv--y~ptGn~--~pd~~g~~r~~  407 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAP--PAPG-ETYTRNTPNSWSVASYDEKLG-----LV--YLPMGNQ--TPDQWGGDRTP  407 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccC--CCCC-CEeccCCCCccCceEEcCCCC-----eE--EEeCCCc--cccccCCcccc
Confidence            99999999987776211111110  0112 2222121111 2223333321     11  1110000  00010000000


Q ss_pred             EEEeCCCcEEEEeCCCCCcceEEeccCC------CCceeeeeEEEEcC-CCC---EEEEEcCCCcEEEEcCCccccceec
Q 009380          430 ATTSFDDTIGIWSGVNFENTSMIHHNNQ------TGRWISSFRAIWGW-DDS---CVFIGNMTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~-~g~---~l~~gs~dg~I~v~d~~~~~~~~~l  499 (536)
                      ...-..+.|.-.|..+++....+.....      .......  +.... +|+   .++.++.+|.+.++|..+|+.+...
T Consensus       408 ~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L--~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       408 ADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSL--VDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             CcccccceEEEEeCCCCceEEEecccCCccccccccCCceE--EeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            0112245577777777776665542110      0000111  11222 553   7999999999999999999887664


Q ss_pred             c
Q 009380          500 Q  500 (536)
Q Consensus       500 ~  500 (536)
                      +
T Consensus       486 ~  486 (764)
T TIGR03074       486 E  486 (764)
T ss_pred             e
Confidence            3

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.33  E-value=1.1  Score=44.81  Aligned_cols=185  Identities=9%  Similarity=0.004  Sum_probs=88.7

Q ss_pred             cccccceEEecccccCccc--cccccC----------CceEEEEEEecCCccEEEEE--eCC----CcEEEEECCCCCCC
Q 009380          210 KIEVGSCVDIGSLTLKPEN--IARIMP----------GRITQMKFLPCSDVRMVVAG--SKL----GNITFWNLDSQQDE  271 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~--~~~~~~----------~~I~~v~~~p~~~~~~l~tg--~~d----g~v~iwd~~~~~~~  271 (536)
                      -+-.++.|.+.|...+|..  +.+...          ..-..+-.-|  +|.+++++  +.+    |.+.+.|-++    
T Consensus        93 PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp--~G~imIS~lGd~~G~g~Ggf~llD~~t----  166 (461)
T PF05694_consen   93 PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP--DGRIMISALGDADGNGPGGFVLLDGET----  166 (461)
T ss_dssp             EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S--S--EEEEEEEETTS-S--EEEEE-TTT----
T ss_pred             eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC--CccEEEEeccCCCCCCCCcEEEEcCcc----
Confidence            3446678999998655432  222221          1223344446  88888875  222    4577777665    


Q ss_pred             CCceEEeccCC---CCEEEEEEecCCCCEEEEEE--------------------CCCeEEEEECCCCeEEEeecCC---C
Q 009380          272 DNGIYLFRTHL---GPISGIVTQQYCLSKIFTSC--------------------YDGLIRLMDAEKEVFDLVYSSE---Y  325 (536)
Q Consensus       272 ~~~~~~~~~h~---~~V~~l~~~~~~~~~l~s~s--------------------~dg~I~vwd~~~~~~~~~~~~~---~  325 (536)
                      ...........   .--..+-|.|.. +.++|..                    +..++.+||+.+.+..+.+...   .
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             --EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            44444443322   234567778876 7787765                    3478999999999888776543   3


Q ss_pred             ceeEEEecCC--CCCEEEEEECCCeEEEEEC-CCCcc----ceeEe-----------------ccCCCeEEEEEecCCCC
Q 009380          326 AVFSLSQQPN--NVNTLYFGEGQGGLNIWDV-RSRKS----ATEWL-----------------LHEARINTIDFNPRNPN  381 (536)
Q Consensus       326 ~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~-~~~~~----~~~~~-----------------~h~~~i~~i~~~p~~~~  381 (536)
                      ....+.|..+  ...-++.+...++|..|-- ..++-    +..+.                 .-..-|+.|.++.|+..
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            4667777544  3223444445556666643 33321    11111                 01345899999998865


Q ss_pred             EEEEEeCCCcEEEEeCCCCC
Q 009380          382 IMATSSTDGTACIWDLRSMA  401 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~  401 (536)
                      +.+++-.+|.|+.||+....
T Consensus       326 LYvs~W~~GdvrqYDISDP~  345 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDPF  345 (461)
T ss_dssp             EEEEETTTTEEEEEE-SSTT
T ss_pred             EEEEcccCCcEEEEecCCCC
Confidence            55666679999999998753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.32  E-value=0.46  Score=48.66  Aligned_cols=143  Identities=8%  Similarity=0.044  Sum_probs=84.1

Q ss_pred             cCCCCEEEEEEecCC---CCEEEEEECCCeEEEEECCC-----CeEEEee--cC--CCc--eeEEEecCCCCCEEEEEEC
Q 009380          280 THLGPISGIVTQQYC---LSKIFTSCYDGLIRLMDAEK-----EVFDLVY--SS--EYA--VFSLSQQPNNVNTLYFGEG  345 (536)
Q Consensus       280 ~h~~~V~~l~~~~~~---~~~l~s~s~dg~I~vwd~~~-----~~~~~~~--~~--~~~--i~~l~~~~~~~~~l~~g~~  345 (536)
                      +.-..|..+.|.|-+   ...|++......|.||-+.-     .+.....  ..  .-+  ...+.|+|.. .+|++-+.
T Consensus        54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-~iL~VLT~  132 (671)
T PF15390_consen   54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-AILTVLTA  132 (671)
T ss_pred             eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-ceEEEEec
Confidence            334568999999863   13577777889999999862     2221111  11  112  2467899988 57766666


Q ss_pred             CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380          346 QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS  423 (536)
Q Consensus       346 dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s  423 (536)
                      ...-.+++++.....-... ...+.|.|.||.+||.+++++.+..=.-+|||-............++.-.+.|.++.-.
T Consensus       133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT  211 (671)
T PF15390_consen  133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEAT  211 (671)
T ss_pred             CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEe
Confidence            5454566666443322222 45688999999999977666666555567888543221111222333444555555443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.24  E-value=1.2  Score=42.85  Aligned_cols=276  Identities=11%  Similarity=0.047  Sum_probs=121.4

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC---CCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH---LGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      ....+.+|.|..  +..-+++|.. |.  |+...++........ ....   .-...+|.|..+  ..++ ++..+. .+
T Consensus        15 t~~~l~dV~F~d--~~~G~~VG~~-g~--il~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~~--~g~i-vG~~g~-ll   84 (302)
T PF14870_consen   15 TDKPLLDVAFVD--PNHGWAVGAY-GT--ILKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDGN--EGWI-VGEPGL-LL   84 (302)
T ss_dssp             -SS-EEEEEESS--SS-EEEEETT-TE--EEEESSTTSS-EE------S-----EEEEEEEETT--EEEE-EEETTE-EE
T ss_pred             CCCceEEEEEec--CCEEEEEecC-CE--EEEECCCCccccccc-cCCCccceeeEEEEEecCC--ceEE-EcCCce-EE
Confidence            345789999985  5566666654 53  344444322111111 1111   123567777543  3444 455553 34


Q ss_pred             EECCCCe-EEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEE
Q 009380          310 MDAEKEV-FDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       310 wd~~~~~-~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      ...+.+. ...+.   ........+....++  .+...+..|.|+.=. ..++. ..........+..+.-.+++ .+++
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG-~~va  160 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDG-RYVA  160 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS--EEE
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCC-cEEE
Confidence            4444442 22221   122333444444333  444455555544322 22332 22223445778888888987 6777


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe--ccCCCCcee
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH--HNNQTGRWI  462 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~  462 (536)
                      +++.-....-||--..    .-..........|.++.|+|++.+.+++ ..|.|+.=+...  ......  .........
T Consensus       161 vs~~G~~~~s~~~G~~----~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~~~~~~~~~~  233 (302)
T PF14870_consen  161 VSSRGNFYSSWDPGQT----TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEPIIPIKTNGY  233 (302)
T ss_dssp             EETTSSEEEEE-TT-S----S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---B-TTSS--S
T ss_pred             EECcccEEEEecCCCc----cceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--CccccccccCCcccCce
Confidence            7765444557775431    1222223456899999999998865544 788888876211  111111  111112233


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      ..+.++|.+++...++|+. |.+ +...+.|+.-..-.. .........+.|.+.  +.-...+.+|.|.-|
T Consensus       234 ~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~--~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  234 GILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP--DKGFVLGQDGVLLRY  301 (302)
T ss_dssp             -EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET--TEEEEE-STTEEEEE
T ss_pred             eeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC--CceEEECCCcEEEEe
Confidence            4566889988877777654 433 445555544333321 111112234455432  455556677888766

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.21  E-value=0.029  Score=60.64  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=73.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR  460 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  460 (536)
                      -+++.|+..|.+-..|++..-   .....-..-.++|++++|+.+|..++.|-.+|.|.+||+...+..+.+......+.
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL---~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNL---GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhccc---chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            478888888999999988631   11223334578999999999999999999999999999999888888865444333


Q ss_pred             eeeeeEEEEcCCCCEEEEEcCCCc
Q 009380          461 WISSFRAIWGWDDSCVFIGNMTRT  484 (536)
Q Consensus       461 ~~~~~~~~~s~~g~~l~~gs~dg~  484 (536)
                      .  .+.+.|..++..++++...|.
T Consensus       177 ~--vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  177 G--VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             e--EEEEEEeCCCcEEEEccCCCc
Confidence            2  233556666667888777675

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.08  E-value=0.45  Score=42.89  Aligned_cols=144  Identities=15%  Similarity=0.156  Sum_probs=89.0

Q ss_pred             CCceEEEEEEecCCccEEEEEeC---------CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSK---------LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD  304 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~---------dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d  304 (536)
                      ..+.+.-..+|  +|++++---.         .|.++.|-...      .+..+...-+--+.++|+.+...+.++-+.+
T Consensus       108 knR~NDgkvdP--~Gryy~GtMad~~~~le~~~g~Ly~~~~~h------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  108 KNRLNDGKVDP--DGRYYGGTMADFGDDLEPIGGELYSWLAGH------QVELIWNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             hcccccCccCC--CCceeeeeeccccccccccccEEEEeccCC------CceeeehhccCCccccccccCcEEEEEccCc
Confidence            45677778889  8988432222         23455554432      1222222223345788988774455666778


Q ss_pred             CeEEEEE--CCCCeEE---Eee---c---CC-CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEE
Q 009380          305 GLIRLMD--AEKEVFD---LVY---S---SE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINT  372 (536)
Q Consensus       305 g~I~vwd--~~~~~~~---~~~---~---~~-~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~  372 (536)
                      -+|.-||  ..+|...   .++   .   .+ ...-.++....| ++.++.-..|+|..+|..+|+.+.++......|+|
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits  258 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS  258 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence            8887787  5555321   111   1   11 122334555555 67777777889999999999999999988999999


Q ss_pred             EEEecCCCCEEEEE
Q 009380          373 IDFNPRNPNIMATS  386 (536)
Q Consensus       373 i~~~p~~~~~l~s~  386 (536)
                      +||---+-.+|++.
T Consensus       259 ccFgGkn~d~~yvT  272 (310)
T KOG4499|consen  259 CCFGGKNLDILYVT  272 (310)
T ss_pred             EEecCCCccEEEEE
Confidence            99974332344433

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.03  E-value=0.018  Score=38.13  Aligned_cols=34  Identities=21%  Similarity=0.619  Sum_probs=30.1

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECC
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLD  266 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~  266 (536)
                      +.....|.+++|+|  ..++||.|+.+|.|.||.+.
T Consensus         8 k~l~~~v~~~~w~P--~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen    8 KNLPSRVSCMSWCP--TMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cCCCCcEEEEEECC--CCCEEEEEECCCeEEEEECC
Confidence            34466799999999  89999999999999999994

>PHA03098 kelch-like protein; Provisional

Probab=95.95  E-value=0.36  Score=51.19  Aligned_cols=185  Identities=5%  Similarity=-0.029  Sum_probs=86.6

Q ss_pred             CccEEEEEeCCC------cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCC
Q 009380          247 DVRMVVAGSKLG------NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~tg~~dg------~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~  315 (536)
                      ++.+++.|+.++      .+..||..+..  ...+..+.........+.+  ++ ..++.|+.+     ..+..||..+.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~  368 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGES  368 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCC
Confidence            567777777543      46677776532  1111111111111222222  34 677777765     35778888877


Q ss_pred             eEEEeecCCCc--eeEEEecCCCCCEEEEEECC------CeEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEEE
Q 009380          316 VFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       316 ~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      ..........+  -.+++.. ++ .+.+.|+.+      ..+..||+.+.+-..  .+..... -.++... ++ .+++.
T Consensus       369 ~W~~~~~lp~~r~~~~~~~~-~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~-~~-~iyv~  443 (534)
T PHA03098        369 KWREEPPLIFPRYNPCVVNV-NN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYH-DG-KIYVI  443 (534)
T ss_pred             ceeeCCCcCcCCccceEEEE-CC-EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEE-CC-EEEEE
Confidence            66543321111  1122222 33 566666632      358889987654321  1111111 1122333 23 56777


Q ss_pred             EeCCC--------cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCC
Q 009380          386 SSTDG--------TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVN  445 (536)
Q Consensus       386 ~s~dg--------~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~  445 (536)
                      |+.++        .+.+||..+.+-.......  ........+.+  ++..++.|+.+     +.|.+||..+
T Consensus       444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLN--FPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCccCCCCCcccceEEEecCCCCceeeCCCCC--cccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence            76432        3888998875311111111  11111112222  56666676654     3466666543

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.90  E-value=0.099  Score=57.05  Aligned_cols=147  Identities=10%  Similarity=0.027  Sum_probs=92.4

Q ss_pred             CCEEEEEEecCCCCEE--EEEECCCeEEEEECCCCe------EE------EeecCCCceeEEEecCCCCCEEEEEECCCe
Q 009380          283 GPISGIVTQQYCLSKI--FTSCYDGLIRLMDAEKEV------FD------LVYSSEYAVFSLSQQPNNVNTLYFGEGQGG  348 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l--~s~s~dg~I~vwd~~~~~------~~------~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~  348 (536)
                      -+|..+...+|+ ...  +..+.+-.|..||+++-.      ..      ..+.......++.|+|.-+...++...|+.
T Consensus       101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            346666666775 433  333445578899987521      11      111223456788899987777888889999


Q ss_pred             EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380          349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS  428 (536)
Q Consensus       349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~  428 (536)
                      |.+..+........-.......++++|+|.| ..++.|-..|++.-|-..-.- +......-......|.+|+|-....+
T Consensus       180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhhcccCcccceeeEEecccc-ceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecceeE
Confidence            9998776433322222356778999999988 688899999999988754310 00011111112578999999876665


Q ss_pred             EEEE
Q 009380          429 LATT  432 (536)
Q Consensus       429 l~t~  432 (536)
                      +++-
T Consensus       258 lvvy  261 (1405)
T KOG3630|consen  258 LVVY  261 (1405)
T ss_pred             EEEe
Confidence            5553

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=95.82  E-value=1.7  Score=40.82  Aligned_cols=196  Identities=13%  Similarity=0.137  Sum_probs=119.4

Q ss_pred             cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380          280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       280 ~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~  356 (536)
                      .-.+-+..+.++.   ++.+.+..+.-++|.|+.+...   .-.+..++--.++..+  | ++++++..+.-+.++|+.+
T Consensus        84 ~~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsd  157 (370)
T COG5276          84 NARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSD  157 (370)
T ss_pred             ehhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCC
Confidence            3345567777775   6788888888899999987532   2233333444444443  4 7999999787888999987


Q ss_pred             Ccc---ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380          357 RKS---ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       357 ~~~---~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      ...   ...+.........++.+  | ++...+..|+-+.|-|+....  .+..+........+.++..+++.-+++.. 
T Consensus       158 pssP~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~--sPvli~~~n~g~g~~sv~vsdnr~y~vvy-  231 (370)
T COG5276         158 PSSPQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPH--SPVLIGSYNTGPGTYSVSVSDNRAYLVVY-  231 (370)
T ss_pred             CCCceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCC--CCeEEEEEecCCceEEEEecCCeeEEEEc-
Confidence            543   33344444445667776  4 577777789999999998853  22333333444578888888776555543 


Q ss_pred             CCCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          434 FDDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       434 ~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                       +--+.+-|..+.+....+..-. .....++.    +.-.+++..+...+..+-+.|+.+
T Consensus       232 -~egvlivd~s~~ssp~~~gsyet~~p~~~s~----v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         232 -DEGVLIVDVSGPSSPTVFGSYETSNPVSIST----VPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             -ccceEEEecCCCCCceEeeccccCCcccccc----eecccceeeeeccccCceeEeccC
Confidence             3447788887776666554221 11111211    122345555555555555555543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.80  E-value=0.034  Score=36.76  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=30.3

Q ss_pred             ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       413 ~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      ....|..++|+|...+||.++.+|.|.+|.+ +++.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4457999999999999999999999999998 5443

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.79  E-value=2.1  Score=43.00  Aligned_cols=195  Identities=10%  Similarity=0.072  Sum_probs=106.0

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCC---CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE---YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARIN  371 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~---~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~  371 (536)
                      ..++.+..+|.|.-.|.+++.........   ..+.+-.+..+|  .+++++.+|.++.+|.++|+.+....... -.+.
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~  146 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA  146 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence            46777788888888888888754332222   122222222254  58999999999999998898877776544 1111


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc----ceeecccCceeEEEEccCCCeEEEEeC--CCcEEEEeCCC
Q 009380          372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP----MKVLSHKRAVHSAYFSPSGSSLATTSF--DDTIGIWSGVN  445 (536)
Q Consensus       372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~----~~~~~~~~~v~~l~~sp~g~~l~t~s~--dg~I~iwd~~~  445 (536)
                      .-..-.++  .+..++.++.+...|..++...-...    ........++     ..++ .++.+..  ++.+.-+|..+
T Consensus       147 ~~~v~~~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-----~~~~-~vy~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         147 SPPVVGDG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-----IASG-TVYVGSDGYDGILYALNAED  218 (370)
T ss_pred             cCcEEcCc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-----eecc-eEEEecCCCcceEEEEEccC
Confidence            21222222  44444467777777777654110000    1111111111     1133 3444444  55677777777


Q ss_pred             CCcceEEeccCCCCceee----e--eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          446 FENTSMIHHNNQTGRWIS----S--FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~----~--~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      +............+....    .  ......  +..++.++.++.+..++..+++.+..+...
T Consensus       219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v--~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYV--DGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             CcEeeeeeeecccCcccccccccccCceEEE--CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            776655432222221100    0  000111  223466777788888999999888887653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.70  E-value=2.6  Score=42.21  Aligned_cols=144  Identities=13%  Similarity=0.150  Sum_probs=78.9

Q ss_pred             ceEEEEEEecCCccEEEEEe-----------CCC-cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          236 RITQMKFLPCSDVRMVVAGS-----------KLG-NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~-----------~dg-~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      ....|+|.+  +|+++++-.           ..+ .|.+++-.+..........+.........+++.+++   |+.++.
T Consensus        15 ~P~~ia~d~--~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G---lyV~~~   89 (367)
T TIGR02604        15 NPIAVCFDE--RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG---VYVATP   89 (367)
T ss_pred             CCceeeECC--CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC---EEEeCC
Confidence            466789988  888777753           223 677776543322123334444444456889998875   444554


Q ss_pred             CCeEEEEECCCC-----eEEEe---ecC-----CCceeEEEecCCCCCEEEEEEC-------------------CCeEEE
Q 009380          304 DGLIRLMDAEKE-----VFDLV---YSS-----EYAVFSLSQQPNNVNTLYFGEG-------------------QGGLNI  351 (536)
Q Consensus       304 dg~I~vwd~~~~-----~~~~~---~~~-----~~~i~~l~~~~~~~~~l~~g~~-------------------dg~i~i  351 (536)
                      ....++.|....     +...+   +..     ......++|.|++ .+.++-+.                   .|.|..
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r  168 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR  168 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEE
Confidence            543344455321     22212   111     3447789999998 44443331                   145666


Q ss_pred             EECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       352 ~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +|..+++. ..+...-.....++|+|++ .++++-.
T Consensus       169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G-~l~~tdn  202 (367)
T TIGR02604       169 YNPDGGKL-RVVAHGFQNPYGHSVDSWG-DVFFCDN  202 (367)
T ss_pred             EecCCCeE-EEEecCcCCCccceECCCC-CEEEEcc
Confidence            66654432 2332222345689999977 5665544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=0.14  Score=55.88  Aligned_cols=146  Identities=11%  Similarity=0.067  Sum_probs=88.6

Q ss_pred             CceeEEEecCCCCCEEEE-EE-CCCeEEEEECCCCccce-----eEe------ccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          325 YAVFSLSQQPNNVNTLYF-GE-GQGGLNIWDVRSRKSAT-----EWL------LHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~-g~-~dg~i~i~d~~~~~~~~-----~~~------~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      -+|..+...++. ...++ -+ .+-.|..||+++-....     -+.      .......++.|+|.-+...+.+..|+.
T Consensus       101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            455566666664 33322 22 33478899998643211     111      122345678999876667788888999


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW  471 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  471 (536)
                      |.+..+....    ...........+++++|+|.|+.++.|-..|++.-|... ++....+.. .+......+++++|-.
T Consensus       180 l~V~~~~~~~----~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~-Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLA----QNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE-PPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhh----hhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccC-CCcCCCcceeEEEEec
Confidence            9988776532    233334567788999999999999999999999988753 222222221 1111134445566654


Q ss_pred             CCCEEE
Q 009380          472 DDSCVF  477 (536)
Q Consensus       472 ~g~~l~  477 (536)
                      ...+++
T Consensus       254 t~eflv  259 (1405)
T KOG3630|consen  254 TQEFLV  259 (1405)
T ss_pred             ceeEEE
Confidence            444443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.66  E-value=2.2  Score=41.09  Aligned_cols=236  Identities=12%  Similarity=0.104  Sum_probs=101.6

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      ..++|.|..  + ..+++|. .| +.+...+. ......+..-..-.+....+....++  ....++..|.|.. ..+.+
T Consensus        63 ~l~~I~f~~--~-~g~ivG~-~g-~ll~T~Dg-G~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~~~~G~iy~-T~DgG  133 (302)
T PF14870_consen   63 HLNSISFDG--N-EGWIVGE-PG-LLLHTTDG-GKTWERVPLSSKLPGSPFGITALGDG--SAELAGDRGAIYR-TTDGG  133 (302)
T ss_dssp             EEEEEEEET--T-EEEEEEE-TT-EEEEESST-TSS-EE----TT-SS-EEEEEEEETT--EEEEEETT--EEE-ESSTT
T ss_pred             eEEEEEecC--C-ceEEEcC-Cc-eEEEecCC-CCCcEEeecCCCCCCCeeEEEEcCCC--cEEEEcCCCcEEE-eCCCC
Confidence            367777764  3 4455554 44 33333332 21122221111112233444444443  4444455555433 22222


Q ss_pred             -eEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          316 -VFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       316 -~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                       .... .......+..+..++++ .+++++.....+.-||.-...-...-......|..|.|.|++ .+.+.+ ..|.|+
T Consensus       134 ~tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~  210 (302)
T PF14870_consen  134 KTWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQ  210 (302)
T ss_dssp             SSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEE
T ss_pred             CCeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC-CEEEEe-CCcEEE
Confidence             3332 23445778888889988 677776555555677754322222223356889999999986 444433 788888


Q ss_pred             EEeCCC-CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          394 IWDLRS-MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       394 iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                      +=+... ...-.............+..++|.+++...++|+ .|.+ +.....++.-...........  ..+++.|..+
T Consensus       211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~--n~~~i~f~~~  286 (302)
T PF14870_consen  211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPS--NLYRIVFVNP  286 (302)
T ss_dssp             EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS-----EEEEEET
T ss_pred             EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCC--ceEEEEEcCC
Confidence            877221 1100001111112334588999999877666555 4533 344445554444332222221  2233556555


Q ss_pred             CCEEEEEcCCCcEEEE
Q 009380          473 DSCVFIGNMTRTVEVI  488 (536)
Q Consensus       473 g~~l~~gs~dg~I~v~  488 (536)
                      .+-++.| .+|.|.-|
T Consensus       287 ~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  287 DKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             TEEEEE--STTEEEEE
T ss_pred             CceEEEC-CCcEEEEe
Confidence            5555555 46766444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=0.7  Score=48.67  Aligned_cols=182  Identities=12%  Similarity=0.007  Sum_probs=98.5

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-e---cCCCceeEEEec
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-Y---SSEYAVFSLSQQ  333 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~---~~~~~i~~l~~~  333 (536)
                      -.|+||+..     +..+....-..+.+-.+.|+.+  ..|+....+|++++|++-....... .   .....|..+.+.
T Consensus        64 ~~I~If~~s-----G~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f  136 (829)
T KOG2280|consen   64 PYIRIFNIS-----GQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFF  136 (829)
T ss_pred             eeEEEEecc-----ccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEe
Confidence            458888887     4444433333347788999987  5788889999999999876543321 1   123446666666


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEec---cCCCeEEEEEecCC--CCEEEEEe-CCCcEEEEeCCCCCCCCCCc
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL---HEARINTIDFNPRN--PNIMATSS-TDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~i~~~p~~--~~~l~s~s-~dg~i~iwdl~~~~~~~~~~  407 (536)
                      .+|   +++-..+|.+.+.+-.....+.++..   ..-.-.|-...+.+  ..+++-.. ..+ ..++-....   ....
T Consensus       137 ~~G---Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~---~~q~  209 (829)
T KOG2280|consen  137 HNG---VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES---RVQL  209 (829)
T ss_pred             cCc---eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecc---cccc
Confidence            555   44445556665543222111222221   11111222222221  11111111 000 011111111   1222


Q ss_pred             ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      ..+......+..+..||+.++|+.-..+|.|.+-+....+....+.
T Consensus       210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            2332334678889999999999999999999999887666655553

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.50  E-value=3.2  Score=41.87  Aligned_cols=53  Identities=21%  Similarity=0.283  Sum_probs=41.9

Q ss_pred             CceEEEEEEec---------CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec
Q 009380          235 GRITQMKFLPC---------SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ  292 (536)
Q Consensus       235 ~~I~~v~~~p~---------~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~  292 (536)
                      +.|+++.|-|.         .|...|++|..+|.|++|...     +..+..-.-|..+|..|.+..
T Consensus        57 e~ITsi~clpl~s~~~s~~~~dw~~I~VG~ssG~vrfyte~-----G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   57 ECITSILCLPLSSQKRSTGGPDWTCIAVGTSSGYVRFYTEN-----GVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             CEEEEEEEEEeecccccCCCCCcEEEEEEecccEEEEEecc-----chHHHHHhcCccceEEEEecc
Confidence            57888888874         356789999999999999975     566666667888888887754

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.39  E-value=3.8  Score=42.31  Aligned_cols=151  Identities=8%  Similarity=0.003  Sum_probs=90.0

Q ss_pred             cccccceeeeecCCCCcccc-cccccccccccccccceEEecccccCcccccccc-----------CCceEEEEEEecCC
Q 009380          180 KDEFNGFKTCKDEGLGVGSC-DLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIM-----------PGRITQMKFLPCSD  247 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~-~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~-----------~~~I~~v~~~p~~~  247 (536)
                      -|....|..+.|.|-+..-. .+       +.-.....|.+|.+........+..           +---..+.|||  .
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paL-------LAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k  123 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPAL-------LAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--K  123 (671)
T ss_pred             eeccceeeeeeecCcccCCCCce-------EEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--C
Confidence            45556777888877653222 11       1224556889998753322211211           11224578999  8


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-----eEEEeec
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-----VFDLVYS  322 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-----~~~~~~~  322 (536)
                      ...|++-.....-.++++...   ...+..-....+-|.|.+|.+||..++++.+..=.-++||-...     .+..++.
T Consensus       124 ~~iL~VLT~~dvSV~~sV~~d---~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFd  200 (671)
T PF15390_consen  124 KAILTVLTARDVSVLPSVHCD---SSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFD  200 (671)
T ss_pred             CceEEEEecCceeEeeeeeeC---CceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeec
Confidence            888887776655566676643   33333333456789999999999555555565556788985543     2344556


Q ss_pred             CCCceeEEEecCCCCCEEEEEE
Q 009380          323 SEYAVFSLSQQPNNVNTLYFGE  344 (536)
Q Consensus       323 ~~~~i~~l~~~~~~~~~l~~g~  344 (536)
                      .++.|.+|.-.-+  ..+++++
T Consensus       201 v~~~Icsi~AT~d--sqVAvaT  220 (671)
T PF15390_consen  201 VGGYICSIEATVD--SQVAVAT  220 (671)
T ss_pred             CCCceEEEEEecc--ceEEEEe
Confidence            6667776665544  3555555

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.37  E-value=2.3  Score=44.99  Aligned_cols=184  Identities=9%  Similarity=0.023  Sum_probs=89.9

Q ss_pred             CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--E--eccCCCeEEEEEecCC
Q 009380          304 DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--W--LLHEARINTIDFNPRN  379 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~--~~h~~~i~~i~~~p~~  379 (536)
                      --.|+|+++.......+.-....+..+.|+.+.  .|++...+|++++|++-. ..+..  .  ......|..+.+...|
T Consensus        63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             ceeEEEEeccccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence            345888887765544444334488899999874  788889999999999853 22222  1  2223344444444434


Q ss_pred             CCEEEEEeCCCcE-EEEeCCCCCCCCCCcceeecccCceeEEEEccCCC---eEEEEe-CCCcEEEEeCCCCCcceEEec
Q 009380          380 PNIMATSSTDGTA-CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS---SLATTS-FDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       380 ~~~l~s~s~dg~i-~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~---~l~t~s-~dg~I~iwd~~~~~~~~~~~~  454 (536)
                       -.+.+.  +|.+ .+-+.............  .....-+|-...+++.   .++-.. ..+ ..++-.... .......
T Consensus       140 -Vavlt~--~g~v~~i~~~~~~~~~~~~diP--~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~-~~q~~~~  212 (829)
T KOG2280|consen  140 -VAVLTV--SGQVILINGVEEPKLRKMPDIP--YNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEES-RVQLHAL  212 (829)
T ss_pred             -eEEEec--CCcEEEEcCCCcchhhhCCCCC--CccCCCcceeEecCCCcceeEEeechhhh-hcccceecc-ccccccc
Confidence             333333  3444 34343332100000001  1111112222222211   111111 000 011111110 1111111


Q ss_pred             cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          455 NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      .....   ...++..||+.++|+--++.|.|.+-+.+..+.+..+.
T Consensus       213 ~~~~~---~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  213 SWPNS---SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             CCCCc---eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            11112   22346679999999999999999999888877776665

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.37  E-value=0.012  Score=62.06  Aligned_cols=122  Identities=14%  Similarity=0.112  Sum_probs=76.0

Q ss_pred             ccccceEEecccccC--ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC---CceEEeccCCCCE
Q 009380          211 IEVGSCVDIGSLTLK--PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED---NGIYLFRTHLGPI  285 (536)
Q Consensus       211 ~~~dg~v~lw~~~~~--~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~---~~~~~~~~h~~~V  285 (536)
                      .++.+.+++-+....  ...+.+++++.|-.+.|... +...+.  ..-|.+.||+++.-+.+-   -.++....-...+
T Consensus       107 ~~~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~-~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~  183 (1283)
T KOG1916|consen  107 NGMENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHT-KCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP  183 (1283)
T ss_pred             hchhhhhhhccCcchhHHHHHHhcCCCCccccccccc-CChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence            345556666554222  23567899999999999764 333333  334788999987532111   1222233334445


Q ss_pred             EEEEEec---CCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380          286 SGIVTQQ---YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN  336 (536)
Q Consensus       286 ~~l~~~~---~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  336 (536)
                      .-|.|.|   .. .++..+-.+++|++..+++.....+..|...+..++|...|
T Consensus       184 ~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g  236 (1283)
T KOG1916|consen  184 QLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEG  236 (1283)
T ss_pred             ceeeeccccccc-ceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhc
Confidence            5556655   33 56777778899999988876555555688888888776665

>PHA03098 kelch-like protein; Provisional

Probab=95.31  E-value=0.65  Score=49.24  Aligned_cols=184  Identities=13%  Similarity=0.092  Sum_probs=87.3

Q ss_pred             CEEEEEECCC------eEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCccce-
Q 009380          296 SKIFTSCYDG------LIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSAT-  361 (536)
Q Consensus       296 ~~l~s~s~dg------~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~-  361 (536)
                      ..++.|+.++      .+..||..+..........  ..-.+++.. ++ .+++.|+.+     ..+..||..+++-.. 
T Consensus       296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NN-RIYVIGGIYNSISLNTVESWKPGESKWREE  373 (534)
T ss_pred             EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence            5666666542      5778888887765443211  111122222 33 577777765     357788887654321 


Q ss_pred             -eEeccCCCeEEEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC
Q 009380          362 -EWLLHEARINTIDFNPRNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF  434 (536)
Q Consensus       362 -~~~~h~~~i~~i~~~p~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~  434 (536)
                       .+. +...-.+++..  ++.+++.|+.+      ..+..||+.+.+-......  ...... .++. ..++..++.|+.
T Consensus       374 ~~lp-~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~--p~~r~~-~~~~-~~~~~iyv~GG~  446 (534)
T PHA03098        374 PPLI-FPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL--PISHYG-GCAI-YHDGKIYVIGGI  446 (534)
T ss_pred             CCcC-cCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC--CccccC-ceEE-EECCEEEEECCc
Confidence             111 11111122222  33677777732      3578899876431111111  101111 1222 225666666664


Q ss_pred             CC--------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380          435 DD--------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR  493 (536)
Q Consensus       435 dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~  493 (536)
                      ++        .+.+||..+.+-...-..  ...+..... +.  .++..++.|+.+     +.|.+||..+.
T Consensus       447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~~~r~~~~~-~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        447 SYIDNIKVYNIVESYNPVTNKWTELSSL--NFPRINASL-CI--FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             cCCCCCcccceEEEecCCCCceeeCCCC--CcccccceE-EE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence            32        388888775432211111  111111111 11  256677777654     46778877665

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.30  E-value=1.5  Score=43.27  Aligned_cols=241  Identities=13%  Similarity=0.091  Sum_probs=111.2

Q ss_pred             eeeecCCCCcccccccccccccccccccceE--EecccccCccccccccCCceEEEEEEec--CCccEEEEEeCC-----
Q 009380          187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCV--DIGSLTLKPENIARIMPGRITQMKFLPC--SDVRMVVAGSKL-----  257 (536)
Q Consensus       187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v--~lw~~~~~~~~~~~~~~~~I~~v~~~p~--~~~~~l~tg~~d-----  257 (536)
                      ..+.|.|||++++....+.+.++.  .+|..  .+-++    ..+..........++++|.  .++.+.++.+..     
T Consensus         5 ~~~a~~pdG~l~v~e~~G~i~~~~--~~g~~~~~v~~~----~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    5 RSMAFLPDGRLLVAERSGRIWVVD--KDGSLKTPVADL----PEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             EEEEEETTSCEEEEETTTEEEEEE--TTTEECEEEEE-----TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             eEEEEeCCCcEEEEeCCceEEEEe--CCCcCcceeccc----ccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            567888999888865333443332  22222  11111    1222334567899999992  224444444421     


Q ss_pred             ---CcEEEEECCCCCCC---CC-ceEEecc---CCCCEEEEEEecCCCCEEEEEECCC-------------eEEEEECCC
Q 009380          258 ---GNITFWNLDSQQDE---DN-GIYLFRT---HLGPISGIVTQQYCLSKIFTSCYDG-------------LIRLMDAEK  314 (536)
Q Consensus       258 ---g~v~iwd~~~~~~~---~~-~~~~~~~---h~~~V~~l~~~~~~~~~l~s~s~dg-------------~I~vwd~~~  314 (536)
                         ..|.-|.+......   .. .+..+..   ....-..|.|.|++ .++++.+..+             .|.-.+...
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccC
Confidence               23444444432000   01 1112222   23345679999998 6666655432             233333322


Q ss_pred             Ce------------EEEee-cCCCceeEEEecCCCCCEEEEEE--CCC--eEEEEECCCCc-------------------
Q 009380          315 EV------------FDLVY-SSEYAVFSLSQQPNNVNTLYFGE--GQG--GLNIWDVRSRK-------------------  358 (536)
Q Consensus       315 ~~------------~~~~~-~~~~~i~~l~~~~~~~~~l~~g~--~dg--~i~i~d~~~~~-------------------  358 (536)
                      ..            ...++ ..-.....++|+|.... |+++.  .++  .|.+.  ..+.                   
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~-l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGR-LWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTE-EEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-EC
T ss_pred             cCCCCCccccCCCceEEEEEeCCCccccEEEECCCCc-EEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCccc
Confidence            10            00011 11134567899998323 44432  222  23322  2111                   


Q ss_pred             ----------cceeEeccCCCeEEEEEecCC------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEE
Q 009380          359 ----------SATEWLLHEARINTIDFNPRN------PNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAY  421 (536)
Q Consensus       359 ----------~~~~~~~h~~~i~~i~~~p~~------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~  421 (536)
                                ++..+. +...+..+.|....      ..+|++.-..+.|....+...... .....+. .....+..++
T Consensus       235 ~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~r~~~v~  312 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-TEEEEFLGGFGGRPRDVA  312 (331)
T ss_dssp             TGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-EEEEEECTTSSS-EEEEE
T ss_pred             cccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-cceEEccccCCCCceEEE
Confidence                      122233 33556677776422      135555555567777777543210 0111111 3444799999


Q ss_pred             EccCCCeEEEEeCCCcEE
Q 009380          422 FSPSGSSLATTSFDDTIG  439 (536)
Q Consensus       422 ~sp~g~~l~t~s~dg~I~  439 (536)
                      +.|||.++++...+|.|.
T Consensus       313 ~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EETTSEEEEEE-TTTTEE
T ss_pred             EcCCCeEEEEECCCCeEe
Confidence            999999888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.18  E-value=0.74  Score=48.63  Aligned_cols=111  Identities=10%  Similarity=0.077  Sum_probs=69.3

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe--ecCCCceeEEEec--CCCCCEEEEEECCCeEEEEECC---
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV--YSSEYAVFSLSQQ--PNNVNTLYFGEGQGGLNIWDVR---  355 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~--~~~~~~i~~l~~~--~~~~~~l~~g~~dg~i~i~d~~---  355 (536)
                      ..+.-+.-+..+ ..-++-+....+.|||...+.....  +...+.|.+++|.  |++ +.+++.+..+.|.+|--.   
T Consensus        30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchh
Confidence            344445444443 3333334456799999998865433  3457899999995  566 566666667788888532   


Q ss_pred             --CC----ccceeEe--ccC-CCeEEEEEecCCCCEEEEEeCCCcEEEEeCC
Q 009380          356 --SR----KSATEWL--LHE-ARINTIDFNPRNPNIMATSSTDGTACIWDLR  398 (536)
Q Consensus       356 --~~----~~~~~~~--~h~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~  398 (536)
                        ..    ..+..+.  .|+ .+|.+..|.++|  .|++|+ ...+.|+|-.
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~s-GNqlfv~dk~  156 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGS-GNQLFVFDKW  156 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEe-CCEEEEECCC
Confidence              11    2233332  344 689999999977  344444 3578888743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.16  E-value=2.9  Score=39.35  Aligned_cols=163  Identities=8%  Similarity=0.028  Sum_probs=102.3

Q ss_pred             ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--CCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380          279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS--EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~  356 (536)
                      .+-...|.++.|+|+. +.|++......-.|+=...|.+.....-  -...-.|.|..++ .++++--.++.+.++.+..
T Consensus        82 ~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          82 LGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             ccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcC
Confidence            3445569999999998 7777777666666665555655544432  3445667777665 5666666788888887765


Q ss_pred             Cccce-----eEe----cc-CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc-------cCceeE
Q 009380          357 RKSAT-----EWL----LH-EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH-------KRAVHS  419 (536)
Q Consensus       357 ~~~~~-----~~~----~h-~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~-------~~~v~~  419 (536)
                      ...+.     .+.    .+ ....-.++|.|.+ +.|..+=+-.-+.||.+....... .......+       -..|.+
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeecccc
Confidence            43211     111    12 4567789999977 455566566667777766432100 01111111       235788


Q ss_pred             EEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 009380          420 AYFSP-SGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       420 l~~sp-~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      +.|++ .+.+++.+..++.+.-.|...
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecCC
Confidence            89998 667777777888888888643

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.88  E-value=7.9  Score=42.97  Aligned_cols=165  Identities=11%  Similarity=0.106  Sum_probs=92.4

Q ss_pred             cCCCceeEEEec---CC---CCCEEEEEECCCeEEEEECCCC---------------ccceeEe---ccCCCeEEEEEec
Q 009380          322 SSEYAVFSLSQQ---PN---NVNTLYFGEGQGGLNIWDVRSR---------------KSATEWL---LHEARINTIDFNP  377 (536)
Q Consensus       322 ~~~~~i~~l~~~---~~---~~~~l~~g~~dg~i~i~d~~~~---------------~~~~~~~---~h~~~i~~i~~~p  377 (536)
                      ....+|..|+|.   ..   ..++|++=.. ..+.|+...-.               .++..+.   ....+...|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788888887   21   1235555444 46777762111               2233333   1234678899999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-ccc----------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHK----------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~----------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      .....||.....|...|||+.............. .+.          ..-..|.|.++.+.|++++. ..+.++|+.+.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence            8888999999999999999932211111111111 111          23347889888777877764 45899999876


Q ss_pred             CcceEEeccCCCCceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcCCc
Q 009380          447 ENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~~~  492 (536)
                      .....+..   ...+-.++.+.-++. ..++++-+ ...|..+++..
T Consensus       235 ~~~~~l~~---~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~  277 (765)
T PF10214_consen  235 WQTEYLVT---AKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS  277 (765)
T ss_pred             Cccchhcc---CCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence            55332211   122333344444554 12333222 24566666655

These proteins are found in fungi.

>PHA02790 Kelch-like protein; Provisional

Probab=94.82  E-value=1.2  Score=46.51  Aligned_cols=141  Identities=9%  Similarity=-0.129  Sum_probs=67.9

Q ss_pred             CccEEEEEeCCC-----cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--CeEEEEECCCCeEEE
Q 009380          247 DVRMVVAGSKLG-----NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--GLIRLMDAEKEVFDL  319 (536)
Q Consensus       247 ~~~~l~tg~~dg-----~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--g~I~vwd~~~~~~~~  319 (536)
                      ++.++++|+.++     .+..||..+..  ...+..+....... +++. -++ ...+.|+.+  .++..||..++....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~--W~~~~~m~~~r~~~-~~v~-~~~-~iYviGG~~~~~sve~ydp~~n~W~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNN--WIPIPPMNSPRLYA-SGVP-ANN-KLYVVGGLPNPTSVERWFHGDAAWVN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCE--EEECCCCCchhhcc-eEEE-ECC-EEEEECCcCCCCceEEEECCCCeEEE
Confidence            556778887653     45667766521  11111111111111 2222 244 566667653  457888887776654


Q ss_pred             eecCCCcee--EEEecCCCCCEEEEEECCC---eEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          320 VYSSEYAVF--SLSQQPNNVNTLYFGEGQG---GLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       320 ~~~~~~~i~--~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      ...-..+..  +++.. ++ .+.+.|+.++   .+..||.++.+-..  .+....... +++..  ++.+.+.|+   .+
T Consensus       346 ~~~l~~~r~~~~~~~~-~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~~~--~~~IYv~GG---~~  417 (480)
T PHA02790        346 MPSLLKPRCNPAVASI-NN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CALVF--GRRLFLVGR---NA  417 (480)
T ss_pred             CCCCCCCCcccEEEEE-CC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEEEE--CCEEEEECC---ce
Confidence            433222221  22222 33 5666776543   46788887654321  111111111 22222  335666663   57


Q ss_pred             EEEeCCCC
Q 009380          393 CIWDLRSM  400 (536)
Q Consensus       393 ~iwdl~~~  400 (536)
                      .+||..+.
T Consensus       418 e~ydp~~~  425 (480)
T PHA02790        418 EFYCESSN  425 (480)
T ss_pred             EEecCCCC
Confidence            78998764

>PRK10115 protease 2; Provisional

Probab=94.69  E-value=8.2  Score=42.21  Aligned_cols=193  Identities=8%  Similarity=0.025  Sum_probs=96.0

Q ss_pred             CceEEEEEEecCCccEEEEEeC-----CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----
Q 009380          235 GRITQMKFLPCSDVRMVVAGSK-----LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----  304 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----  304 (536)
                      -.+..+.|+|  |+++|+.+..     .-.|++.|+.++    ..+........  ..++|.+++..++++...+     
T Consensus       127 ~~l~~~~~Sp--dg~~la~~~d~~G~E~~~l~v~d~~tg----~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~  198 (686)
T PRK10115        127 YTLGGMAITP--DNTIMALAEDFLSRRQYGIRFRNLETG----NWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLP  198 (686)
T ss_pred             EEEeEEEECC--CCCEEEEEecCCCcEEEEEEEEECCCC----CCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCC
Confidence            3467788899  9998887633     235888888763    22211111111  4589999983344444322     


Q ss_pred             CeEEEEECCCC--eEEEeecC-CCceeEEEecC-CCCCEEEEEEC---CCeEEEEECC--CCccceeEeccCCCeEEEEE
Q 009380          305 GLIRLMDAEKE--VFDLVYSS-EYAVFSLSQQP-NNVNTLYFGEG---QGGLNIWDVR--SRKSATEWLLHEARINTIDF  375 (536)
Q Consensus       305 g~I~vwd~~~~--~~~~~~~~-~~~i~~l~~~~-~~~~~l~~g~~---dg~i~i~d~~--~~~~~~~~~~h~~~i~~i~~  375 (536)
                      ..|..+++.++  .-..++.. +....-..+.+ ++ .+++..+.   ++.+.+++..  .+.....+....+....+. 
T Consensus       199 ~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-  276 (686)
T PRK10115        199 YQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-  276 (686)
T ss_pred             CEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence            36888888877  33444432 23333223333 55 55544433   3578888853  3332222222222222222 


Q ss_pred             ecCCCCEEEEEeCC-Cc--EEEEeCCCCCCCCCCcceeecc--cCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          376 NPRNPNIMATSSTD-GT--ACIWDLRSMATDKPEPMKVLSH--KRAVHSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       376 ~p~~~~~l~s~s~d-g~--i~iwdl~~~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                      +..+ .+++....+ ..  |...++...    .....+..+  ...|..+.+. .+.++++...++.-+++-+
T Consensus       277 ~~~~-~ly~~tn~~~~~~~l~~~~~~~~----~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        277 HYQH-RFYLRSNRHGKNFGLYRTRVRDE----QQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             eCCC-EEEEEEcCCCCCceEEEecCCCc----ccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            3322 333333222 23  333344321    122334444  2467888887 3345555566776444433

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=94.58  E-value=0.32  Score=51.26  Aligned_cols=100  Identities=17%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             EEEEEEecCCCCEEEEEECCC-----eEEEEECC---CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC
Q 009380          285 ISGIVTQQYCLSKIFTSCYDG-----LIRLMDAE---KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~---~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~  356 (536)
                      -..+.|-|+| ..++|-+.||     .|..+..+   .|.+....+.+..+..++|+-.. ..++++.. ..|.+|-..+
T Consensus       249 e~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s-~vlav~~~-n~~~lwttkN  325 (1243)
T COG5290         249 EHQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS-TVLAVAEG-NLLKLWTTKN  325 (1243)
T ss_pred             hhccccccCC-ceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH-HHHHHhhc-ceEEEEEccc
Confidence            3458899999 8898877554     35555433   34555555666777888887665 44554444 4899997655


Q ss_pred             CccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          357 RKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      -..-......-..+.-|.|+|...+.+...+
T Consensus       326 yhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d  356 (1243)
T COG5290         326 YHWYLKVERQIPGISYVKWHPEEKNTLLFRD  356 (1243)
T ss_pred             eEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence            4332222234455667889987666555444

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.55  E-value=2.5  Score=39.77  Aligned_cols=149  Identities=12%  Similarity=0.115  Sum_probs=88.3

Q ss_pred             CEEEEEEecCCCCEEEEEE---CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE-CCCCcc
Q 009380          284 PISGIVTQQYCLSKIFTSC---YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD-VRSRKS  359 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s---~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d-~~~~~~  359 (536)
                      .+.+.++++++ ..++...   ....+.++..........  ....+..-.|.+++ .+.++...+....++. ...+..
T Consensus        25 ~~~s~AvS~dg-~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDG-SRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCC-CeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCC-CEEEEEcCCCceEEEEecCCCcc
Confidence            68899999998 6665554   334555555444333222  33478888999996 6666666666666663 333332


Q ss_pred             c-eeEec--cCCCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCC-C---CCcceee-cccCceeEEEEccCCCeE
Q 009380          360 A-TEWLL--HEARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATD-K---PEPMKVL-SHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       360 ~-~~~~~--h~~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~-~---~~~~~~~-~~~~~v~~l~~sp~g~~l  429 (536)
                      . ..+..  ....|..+.++|||.++.+...  .++.|.+--+...... .   ....... .....+..+.|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            1 12221  1128999999999966555442  3466776655432211 0   1111121 235688999999999877


Q ss_pred             EEEeCCC
Q 009380          430 ATTSFDD  436 (536)
Q Consensus       430 ~t~s~dg  436 (536)
                      +.+...+
T Consensus       181 V~~~~~~  187 (253)
T PF10647_consen  181 VLGRSAG  187 (253)
T ss_pred             EEeCCCC
Confidence            7766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.37  E-value=6.9  Score=41.14  Aligned_cols=229  Identities=12%  Similarity=0.029  Sum_probs=108.4

Q ss_pred             CEEEEEECCCeEEEEECCCCe---EEEeecC-CCceeEEEecCCCCCEEEEEECCCe--EEEEECCCCccceeEeccCCC
Q 009380          296 SKIFTSCYDGLIRLMDAEKEV---FDLVYSS-EYAVFSLSQQPNNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEAR  369 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~---~~~~~~~-~~~i~~l~~~~~~~~~l~~g~~dg~--i~i~d~~~~~~~~~~~~h~~~  369 (536)
                      ..++-+..+|.+....+....   ....++. .....++++..++..+|++|+.-|.  +..|....-+.+..+. .-++
T Consensus       223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~P  301 (504)
T PF10433_consen  223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGP  301 (504)
T ss_dssp             SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----S
T ss_pred             CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCC
Confidence            789999999999998877533   2233333 5566778887665458888886554  4445533333344444 5678


Q ss_pred             eEEEEEecC---CCC------EEEEEe---CCCcEEEEeCCCCCCCCCCcceeecc--cCceeEEEEcc-CCCeEEEEeC
Q 009380          370 INTIDFNPR---NPN------IMATSS---TDGTACIWDLRSMATDKPEPMKVLSH--KRAVHSAYFSP-SGSSLATTSF  434 (536)
Q Consensus       370 i~~i~~~p~---~~~------~l~s~s---~dg~i~iwdl~~~~~~~~~~~~~~~~--~~~v~~l~~sp-~g~~l~t~s~  434 (536)
                      |..+++.+.   +..      .+++++   .+|.+++..  .+-............  -..++.+.... ++.+|+.+..
T Consensus       302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~  379 (504)
T PF10433_consen  302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFP  379 (504)
T ss_dssp             EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEES
T ss_pred             ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcC
Confidence            988888642   111      344443   467888764  221000001111122  33445555433 2456666555


Q ss_pred             CCcEEEEeCC---CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeE
Q 009380          435 DDTIGIWSGV---NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRF  511 (536)
Q Consensus       435 dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~  511 (536)
                      + .-+++.+.   ..+.+..+... .......++.+..-. +..++=... ..|++.+...++....+.......+ ...
T Consensus       380 ~-~T~vl~~~~~d~~e~~~e~~~~-~f~~~~~Tl~~~~~~-~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I-~~a  454 (504)
T PF10433_consen  380 N-ETRVLQISEGDDGEEVEEVEED-GFDTDEPTLAAGNVG-DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSII-VAA  454 (504)
T ss_dssp             S-EEEEEEES----SSEEEEE----TS-SSS-EEEEEEET-TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS----SEE
T ss_pred             C-ceEEEEEecccCCcchhhhhhc-cCCCCCCCeEEEEcC-CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeE-EEE
Confidence            4 44555553   23333222111 111111111122222 334444433 3488888777766666544333333 233


Q ss_pred             eecCCCCCEEEEEccCCeEEEEec
Q 009380          512 HAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       512 ~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +..   +.+++.+-.+|.+.++.+
T Consensus       455 ~~~---~~~v~v~~~~~~~~~~~~  475 (504)
T PF10433_consen  455 SIN---DPQVLVALSGGELVYFEL  475 (504)
T ss_dssp             EES---SSEEEEEE-TTEEEEEEE
T ss_pred             EEC---CCEEEEEEeCCcEEEEEE
Confidence            342   367777777788887765

...

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=2.4  Score=37.71  Aligned_cols=178  Identities=13%  Similarity=0.085  Sum_probs=89.9

Q ss_pred             CEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380          338 NTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR  415 (536)
Q Consensus       338 ~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~  415 (536)
                      .++.+.+.  ...|++||+++++.+..-......+..=-...-+..+.+-.-.+|.-.++|.++.+     .+..+...+
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~-----~lg~~~y~G  131 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE-----ELGRFSYEG  131 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhh-----hhcccccCC
Confidence            45555543  34799999999987655442212221111111122333333457888899988753     333333344


Q ss_pred             ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      .=+.++.  ++..|+.+....+++.-|..+.....++.... .+.++..+ .+.|- +|...+-.-.+..|-..+..+|+
T Consensus       132 eGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~-~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         132 EGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTD-DGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             cceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEE-CCeecccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence            4455554  45557777666778888877665555443211 11111111 01111 34344433334445555555555


Q ss_pred             cceecc-----------CCceeeeeeeEeecCCCCCEEEEEc
Q 009380          495 SVATLQ-----------SPYISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       495 ~~~~l~-----------~~~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      .+..+.           ..+ ..+...+++.|..+.++++|-
T Consensus       208 V~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEEEEccCCchhcCccccc-cccccceeecCcCCeEEEecC
Confidence            443332           222 223356778886656777763

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.09  E-value=1.9  Score=46.10  Aligned_cols=101  Identities=10%  Similarity=0.126  Sum_probs=71.1

Q ss_pred             CEEEEEECCCeEEEEECCC-------C-------------eEEEeecCCCceeEEEec--CCCCCEEEEEECCCeEEEEE
Q 009380          296 SKIFTSCYDGLIRLMDAEK-------E-------------VFDLVYSSEYAVFSLSQQ--PNNVNTLYFGEGQGGLNIWD  353 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~-------~-------------~~~~~~~~~~~i~~l~~~--~~~~~~l~~g~~dg~i~i~d  353 (536)
                      ..|+.|..||.|.+|.++.       .             ++...+.....+++++++  ... ++||+++....|.||-
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-RLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-eEEEEecCCceEEEEE
Confidence            6789999999999997632       0             012233455689999998  555 7888888888888876


Q ss_pred             CCCC--cc-ceeEeccCCCeEEEEEecCC--CC---EEEEEeCCCcEEEEeC
Q 009380          354 VRSR--KS-ATEWLLHEARINTIDFNPRN--PN---IMATSSTDGTACIWDL  397 (536)
Q Consensus       354 ~~~~--~~-~~~~~~h~~~i~~i~~~p~~--~~---~l~s~s~dg~i~iwdl  397 (536)
                      ....  +. ...-..|...|.+|+|.++.  +.   .+++++-.|.+.+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            5432  11 11111367789999998754  22   7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.06  E-value=5.6  Score=37.78  Aligned_cols=207  Identities=17%  Similarity=0.180  Sum_probs=111.7

Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECC------CCcc-ceeEec-----cCCCeEEEEEecCC-----------CCE
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVR------SRKS-ATEWLL-----HEARINTIDFNPRN-----------PNI  382 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~------~~~~-~~~~~~-----h~~~i~~i~~~p~~-----------~~~  382 (536)
                      .-+.|+++|.+ .+.++....+...+||..      ..+. +-++..     .....+.+.|+...           .-.
T Consensus        24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            46789999988 566666677899999986      2222 222221     23457788887532           123


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCC-CCcceee-cccCce-eEEEEcc--CCCeEEEEe-CCCcEEEEeCCCCCcceE---Ee
Q 009380          383 MATSSTDGTACIWDLRSMATDK-PEPMKVL-SHKRAV-HSAYFSP--SGSSLATTS-FDDTIGIWSGVNFENTSM---IH  453 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~-~~~~~~~-~~~~~v-~~l~~sp--~g~~l~t~s-~dg~I~iwd~~~~~~~~~---~~  453 (536)
                      |+.+++||+|.-|...-..... ...+.+. .....| ..+++..  .+.+|+.+. ..++|.|||-. ..++..   +.
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~  181 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFI  181 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCcc
Confidence            6788899999999854321100 0111111 112333 3455554  355665554 67889999853 222211   00


Q ss_pred             cc-C----------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecC-----CC
Q 009380          454 HN-N----------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP-----HQ  517 (536)
Q Consensus       454 ~~-~----------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p-----~~  517 (536)
                      .. .          ..+..+.+.-+.-.++...=+.|..-|.|.+||.... .++++.....-..+.-++..|     ..
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCC
Confidence            00 0          0011111111222334444445556689999998764 666664322111122233222     23


Q ss_pred             CCEEEEEccCCeEEEEec
Q 009380          518 VGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       518 ~~~lasgs~Dg~v~iW~~  535 (536)
                      +.+|+.--.||+|..||.
T Consensus       261 g~lLVGNFGDG~InaFD~  278 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDP  278 (336)
T ss_pred             CCeEEeecCCceeEEecC
Confidence            567877778999999985

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.00  E-value=1.7  Score=46.09  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCC---
Q 009380          370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGV---  444 (536)
Q Consensus       370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~---  444 (536)
                      ..-+.-+.-+ ...++-+....+.|||.+.+.   ..-...+.....|..+.|..  +|+.+++.|..+.|.+|.-.   
T Consensus        32 ~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~---lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   32 PSLISGSSIK-KIAVVDSSRSELTIWDTRSGV---LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             cceEeecccC-cEEEEECCCCEEEEEEcCCcE---EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3334444433 333344444579999998753   11111224578999999875  88999999999999998642   


Q ss_pred             ------CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          445 ------NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       445 ------~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                            ...++..+.....+.+.+..  ..|.++|.+++..  .+.+.|++-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igd--s~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGD--SIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccc--eeEecCCeEEEEe--CCEEEEECC
Confidence                  22334444333333344433  6788888655444  346888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=93.98  E-value=2.1  Score=44.68  Aligned_cols=139  Identities=6%  Similarity=-0.112  Sum_probs=66.7

Q ss_pred             CEEEEEECCC-----eEEEEECCCCeEEEeecCCCc--eeEEEecCCCCCEEEEEECC--CeEEEEECCCCccc--eeEe
Q 009380          296 SKIFTSCYDG-----LIRLMDAEKEVFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSA--TEWL  364 (536)
Q Consensus       296 ~~l~s~s~dg-----~I~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~--~~~~  364 (536)
                      .+++.|+.++     .+..||..+...........+  -.+++. -++ .+.++|+.+  ..+..||..+++-.  ..+.
T Consensus       273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l~  350 (480)
T PHA02790        273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSLL  350 (480)
T ss_pred             EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE-ECC-EEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence            5566676543     577788888766544332111  112222 233 566667653  35788887655321  1111


Q ss_pred             ccCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380          365 LHEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW  441 (536)
Q Consensus       365 ~h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw  441 (536)
                      ...... +++..  ++.+.+.|+.++   .+..||.++..-.......  ........+.  -+|...+.|+   .+.+|
T Consensus       351 ~~r~~~-~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~--~~r~~~~~~~--~~~~IYv~GG---~~e~y  420 (480)
T PHA02790        351 KPRCNP-AVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY--YPHYKSCALV--FGRRLFLVGR---NAEFY  420 (480)
T ss_pred             CCCccc-EEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC--CccccceEEE--ECCEEEEECC---ceEEe
Confidence            111111 22222  236777777653   4678888764311111111  0111111222  2566555553   57788


Q ss_pred             eCCCC
Q 009380          442 SGVNF  446 (536)
Q Consensus       442 d~~~~  446 (536)
                      |..+.
T Consensus       421 dp~~~  425 (480)
T PHA02790        421 CESSN  425 (480)
T ss_pred             cCCCC
Confidence            87654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.68  E-value=7.6  Score=38.04  Aligned_cols=101  Identities=5%  Similarity=0.081  Sum_probs=49.4

Q ss_pred             CEEEEEECC-----CeEEEEECCCCeE----EEeecCCCce--eEEEecCCCCCEEEEEEC-----CCeEEEEECCCCcc
Q 009380          296 SKIFTSCYD-----GLIRLMDAEKEVF----DLVYSSEYAV--FSLSQQPNNVNTLYFGEG-----QGGLNIWDVRSRKS  359 (536)
Q Consensus       296 ~~l~s~s~d-----g~I~vwd~~~~~~----~~~~~~~~~i--~~l~~~~~~~~~l~~g~~-----dg~i~i~d~~~~~~  359 (536)
                      .+++.|+.+     ..+..+|+.+...    ...-....+.  .+++.. ++ .+.+.|+.     ...+..||+.+.+-
T Consensus        74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~-~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DG-TLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CC-EEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            566667654     3566777776553    1111111111  122222 23 56666664     23688899886543


Q ss_pred             ce--eEeccCCCeEEEEEecCCCCEEEEEeCCC----cEEEEeCCCC
Q 009380          360 AT--EWLLHEARINTIDFNPRNPNIMATSSTDG----TACIWDLRSM  400 (536)
Q Consensus       360 ~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg----~i~iwdl~~~  400 (536)
                      ..  .+.. .......+..-++ ++.+.|+.++    .+.+||+.+.
T Consensus       152 ~~~~~~p~-~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       152 FELPDFPG-EPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eECCCCCC-CCCCcceEEEECC-EEEEEcCCCCccccceEEEecCCC
Confidence            21  1111 1111122222223 6777787654    2568888764

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.67  E-value=6.3  Score=37.08  Aligned_cols=148  Identities=11%  Similarity=0.006  Sum_probs=85.0

Q ss_pred             ceEEEEEEecCCccEEEEEe---CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE-
Q 009380          236 RITQMKFLPCSDVRMVVAGS---KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD-  311 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~---~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd-  311 (536)
                      .+.+.++++  ++..++.-.   ....++++....     .....+.  ...+..-.|.+++ ...+....+...+++. 
T Consensus        25 ~~~s~AvS~--dg~~~A~v~~~~~~~~L~~~~~~~-----~~~~~~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSP--DGSRVAAVSEGDGGRSLYVGPAGG-----PVRPVLT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECC--CCCeEEEEEEcCCCCEEEEEcCCC-----cceeecc--CCccccccccCCC-CEEEEEcCCCceEEEEe
Confidence            688999999  888776655   333455554432     2222222  2367788999997 6666656566666663 


Q ss_pred             CCCCeE--EEeec--CCCceeEEEecCCCCCEEEEEE--CCCeEEEEECCC---C--c----cceeEeccCCCeEEEEEe
Q 009380          312 AEKEVF--DLVYS--SEYAVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRS---R--K----SATEWLLHEARINTIDFN  376 (536)
Q Consensus       312 ~~~~~~--~~~~~--~~~~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~---~--~----~~~~~~~h~~~i~~i~~~  376 (536)
                      ...+..  ..+..  ....|..+.++|+|.+..++..  .++.|.+--+..   +  .    .+.........+.++.|.
T Consensus        95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen   95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            333322  22211  1128999999999955544442  346777765542   2  1    111112335688999999


Q ss_pred             cCCCCEEEEEe-CCCcEEE
Q 009380          377 PRNPNIMATSS-TDGTACI  394 (536)
Q Consensus       377 p~~~~~l~s~s-~dg~i~i  394 (536)
                      +++. +++.+. .++.+..
T Consensus       175 ~~~~-L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  175 DDST-LVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCE-EEEEeCCCCCceeE
Confidence            9774 444444 3443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.28  E-value=0.29  Score=31.43  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=27.1

Q ss_pred             CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCC
Q 009380          368 ARINTIDFNPRNP--NIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       368 ~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~  399 (536)
                      +.|.++.|+|...  .+|+.+-.-|.|.|+|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999998654  6888888889999999995

It contains a characteristic DLL sequence motif.

>PLN02193 nitrile-specifier protein

Probab=93.20  E-value=9.5  Score=39.67  Aligned_cols=101  Identities=10%  Similarity=0.105  Sum_probs=52.6

Q ss_pred             CEEEEEECC-----CeEEEEECCCCeEEEeecC---CCc--eeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccc
Q 009380          296 SKIFTSCYD-----GLIRLMDAEKEVFDLVYSS---EYA--VFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSA  360 (536)
Q Consensus       296 ~~l~s~s~d-----g~I~vwd~~~~~~~~~~~~---~~~--i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~  360 (536)
                      .+++.|+.+     ..+.+||+.+.....+...   ..+  -.+++.. ++ .+++.|+.++     .+..||+.+.+-.
T Consensus       230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~-~iYv~GG~~~~~~~~~~~~yd~~t~~W~  307 (470)
T PLN02193        230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EE-NVYVFGGVSATARLKTLDSYNIVDKKWF  307 (470)
T ss_pred             EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CC-EEEEECCCCCCCCcceEEEEECCCCEEE
Confidence            566666654     3588899988776654322   111  1122222 23 5666776543     4678887765421


Q ss_pred             eeE-----eccCCCeEEEEEecCCCCEEEEEeCC----CcEEEEeCCCCC
Q 009380          361 TEW-----LLHEARINTIDFNPRNPNIMATSSTD----GTACIWDLRSMA  401 (536)
Q Consensus       361 ~~~-----~~h~~~i~~i~~~p~~~~~l~s~s~d----g~i~iwdl~~~~  401 (536)
                      ..-     ...... .++... ++ .+++.++.+    ..+.+||+.+.+
T Consensus       308 ~~~~~~~~~~~R~~-~~~~~~-~g-kiyviGG~~g~~~~dv~~yD~~t~~  354 (470)
T PLN02193        308 HCSTPGDSFSIRGG-AGLEVV-QG-KVWVVYGFNGCEVDDVHYYDPVQDK  354 (470)
T ss_pred             eCCCCCCCCCCCCC-cEEEEE-CC-cEEEEECCCCCccCceEEEECCCCE
Confidence            110     001111 122222 24 566766655    458899988753

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.18  E-value=0.033  Score=59.02  Aligned_cols=70  Identities=16%  Similarity=0.164  Sum_probs=49.8

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE-----------ecCCCCEEEEEECC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT-----------QQYCLSKIFTSCYD  304 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~-----------~~~~~~~l~s~s~d  304 (536)
                      .|..+-|-+  +.-++..+.+++.|++.+.+.     .....+.+|+..+..++|           +||| ..|++++.|
T Consensus       185 ~V~wcp~~~--~~~~ic~~~~~~~i~lL~~~r-----a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG-tv~a~a~~d  256 (1283)
T KOG1916|consen  185 LVSWCPIAV--NKVYICYGLKGGEIRLLNINR-----ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG-TVFAWAISD  256 (1283)
T ss_pred             eeeeccccc--ccceeeeccCCCceeEeeech-----HHHHHHHhcCCCcccHHHHhhchhhheeeCCCC-cEEEEeecC
Confidence            344444555  557888999999999988875     233556668877766654           6777 788888888


Q ss_pred             CeEEEEECC
Q 009380          305 GLIRLMDAE  313 (536)
Q Consensus       305 g~I~vwd~~  313 (536)
                      |.++.|.+.
T Consensus       257 G~v~f~Qiy  265 (1283)
T KOG1916|consen  257 GSVGFYQIY  265 (1283)
T ss_pred             Cccceeeee
Confidence            888877653

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.01  E-value=3.9  Score=33.78  Aligned_cols=108  Identities=9%  Similarity=0.042  Sum_probs=68.6

Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCC--------eEEEeecCCCceeEEEecC----CCCCEEEEEECCCeEEEEECC
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKE--------VFDLVYSSEYAVFSLSQQP----NNVNTLYFGEGQGGLNIWDVR  355 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~--------~~~~~~~~~~~i~~l~~~~----~~~~~l~~g~~dg~i~i~d~~  355 (536)
                      -.|.... ..|+.++.-|.|.|++....        ...........|++|+-.+    ++...|+.|+.. .|..||+.
T Consensus         4 GkfDG~~-pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~   81 (136)
T PF14781_consen    4 GKFDGVH-PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE   81 (136)
T ss_pred             EEeCCCc-eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence            3455555 56778888889999987643        2344556677888886654    234678888776 89999998


Q ss_pred             CCccceeEeccCCCeEEEEEecC---CCCEEEEEeCCCcEEEEeCCC
Q 009380          356 SRKSATEWLLHEARINTIDFNPR---NPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       356 ~~~~~~~~~~h~~~i~~i~~~p~---~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      ...-+..-. -.+.|++|.+-.-   ...++++|+ +..|.-||...
T Consensus        82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G  126 (136)
T PF14781_consen   82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEG  126 (136)
T ss_pred             cCchhhhhh-CccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCC
Confidence            766543322 3467777776321   113455544 55666666543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.91  E-value=11  Score=37.53  Aligned_cols=190  Identities=10%  Similarity=0.144  Sum_probs=108.6

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec----CCCCE-EEEEEC-C---CeEEEEECC--CC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ----YCLSK-IFTSCY-D---GLIRLMDAE--KE  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~~-l~s~s~-d---g~I~vwd~~--~~  315 (536)
                      ...+|+...+++-+.+||++     ++.+..+.  .+.++.+....    .+... |+.++. +   .+|++|.+.  ++
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-----Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-----GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-----S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             ccceEEEEeCCCCEEEEcCC-----CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence            55688888999999999998     56666653  23444444321    23121 444443 2   479999775  45


Q ss_pred             eEEEeec-------CCCceeEEEec--C-CCCCEEEEEECCCeEEEEECC---CC----ccceeEeccCCCeEEEEEecC
Q 009380          316 VFDLVYS-------SEYAVFSLSQQ--P-NNVNTLYFGEGQGGLNIWDVR---SR----KSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       316 ~~~~~~~-------~~~~i~~l~~~--~-~~~~~l~~g~~dg~i~i~d~~---~~----~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      .+..+..       .-..+..+|+.  + ++.-++++...+|.+..|-+.   .+    +.+++|.. ...+..+.....
T Consensus       140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe  218 (381)
T PF02333_consen  140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDE  218 (381)
T ss_dssp             EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETT
T ss_pred             cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecc
Confidence            5544322       11346677764  3 343467778899998888775   23    23666663 457888888875


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEcc--CC-CeEEEEe-CCCcEEEEeCCC
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSP--SG-SSLATTS-FDDTIGIWSGVN  445 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp--~g-~~l~t~s-~dg~I~iwd~~~  445 (536)
                      . ..|..+-++.-|.-|+..-........+...   .....|-.|++-.  ++ .||++++ .+++..||+...
T Consensus       219 ~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  219 T-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             T-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred             c-CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence            5 5888898887676677653322122222121   2345677777653  43 3555555 577899999764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN02153 epithiospecifier protein

Probab=92.88  E-value=11  Score=37.37  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             CEEEEEECC-----CeEEEEECCCCeEEEeecC-----C--CceeEEEecCCCCCEEEEEECC-----------CeEEEE
Q 009380          296 SKIFTSCYD-----GLIRLMDAEKEVFDLVYSS-----E--YAVFSLSQQPNNVNTLYFGEGQ-----------GGLNIW  352 (536)
Q Consensus       296 ~~l~s~s~d-----g~I~vwd~~~~~~~~~~~~-----~--~~i~~l~~~~~~~~~l~~g~~d-----------g~i~i~  352 (536)
                      .+++.|+.+     ..+.+||+.+.....+...     .  ..-.+++.. ++ .+++.|+.+           ..|.+|
T Consensus        87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~v~~y  164 (341)
T PLN02153         87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-EN-HVYVFGGVSKGGLMKTPERFRTIEAY  164 (341)
T ss_pred             EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CC-EEEEECCccCCCccCCCcccceEEEE
Confidence            566666653     3578899988766544321     1  111122222 33 566666643           247788


Q ss_pred             ECCCCc
Q 009380          353 DVRSRK  358 (536)
Q Consensus       353 d~~~~~  358 (536)
                      |+.+.+
T Consensus       165 d~~~~~  170 (341)
T PLN02153        165 NIADGK  170 (341)
T ss_pred             ECCCCe
Confidence            887653

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.77  E-value=6.3  Score=39.48  Aligned_cols=153  Identities=10%  Similarity=0.041  Sum_probs=72.8

Q ss_pred             CCeEEEEEecCCCCEEEEEe-----------CCC-cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC
Q 009380          368 ARINTIDFNPRNPNIMATSS-----------TDG-TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD  435 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s-----------~dg-~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d  435 (536)
                      .....|+|.++| +++++-.           ..+ .|.+++-..+.........+...-...+.+++.++|  |++++..
T Consensus        14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP   90 (367)
T ss_pred             CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence            345678888877 4555432           123 677776544322111222222333456889999988  4444544


Q ss_pred             CcEEEEeCCCCC----cceEE-eccCCC-C-ceeeeeEEEEcCCCCEEEEEcCC-------------------CcEEEEc
Q 009380          436 DTIGIWSGVNFE----NTSMI-HHNNQT-G-RWISSFRAIWGWDDSCVFIGNMT-------------------RTVEVIS  489 (536)
Q Consensus       436 g~I~iwd~~~~~----~~~~~-~~~~~~-~-~~~~~~~~~~s~~g~~l~~gs~d-------------------g~I~v~d  489 (536)
                      ...++.|.....    ....+ ...... . .......+.|.|||.+.++-+..                   +.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            433344543211    11222 111111 0 01112236789999775544421                   3455555


Q ss_pred             CCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380          490 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG  527 (536)
Q Consensus       490 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D  527 (536)
                      ..+++ +..+....  ..+..++|+| ++.++++-+.+
T Consensus       171 pdg~~-~e~~a~G~--rnp~Gl~~d~-~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGK-LRVVAHGF--QNPYGHSVDS-WGDVFFCDNDD  204 (367)
T ss_pred             cCCCe-EEEEecCc--CCCccceECC-CCCEEEEccCC
Confidence            55443 22222222  2224678888 56776664433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.75  E-value=4.2  Score=41.14  Aligned_cols=151  Identities=12%  Similarity=0.138  Sum_probs=92.5

Q ss_pred             EEEEEEecCCccEEE-EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC------CCEEEEEECCCeEEEE
Q 009380          238 TQMKFLPCSDVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC------LSKIFTSCYDGLIRLM  310 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~------~~~l~s~s~dg~I~vw  310 (536)
                      ..+..+.. +..+|. .|+....++-.|+..    ++.+..+..|...  -+.|.|+.      +..-+.|-.+..|.-.
T Consensus       470 ~K~mlh~~-dssli~~dg~~~~kLykmDIEr----GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrI  542 (776)
T COG5167         470 EKIMLHDN-DSSLIYLDGGERDKLYKMDIER----GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRI  542 (776)
T ss_pred             hhceeecC-CcceEEecCCCcccceeeeccc----ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEe
Confidence            33444432 444444 455555666667665    7788888888765  46777753      1223344445555555


Q ss_pred             ECCC-C-eEEEe----ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          311 DAEK-E-VFDLV----YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       311 d~~~-~-~~~~~----~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      |.+- + ++...    +.......|..-..+|  ++++++..|.|++||.-.-..-..+.+....|..|....+|..+|+
T Consensus       543 DPR~~gNKi~v~esKdY~tKn~Fss~~tTesG--yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ila  620 (776)
T COG5167         543 DPRARGNKIKVVESKDYKTKNKFSSGMTTESG--YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILA  620 (776)
T ss_pred             cccccCCceeeeeehhccccccccccccccCc--eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEE
Confidence            6542 2 22111    1223344444444444  8999999999999996543434455677888999999998876666


Q ss_pred             EEeCCCcEEEEeCCC
Q 009380          385 TSSTDGTACIWDLRS  399 (536)
Q Consensus       385 s~s~dg~i~iwdl~~  399 (536)
                      ||  ...+.+-|++-
T Consensus       621 TC--k~yllL~d~~i  633 (776)
T COG5167         621 TC--KNYLLLTDVPI  633 (776)
T ss_pred             ee--cceEEEEeccc
Confidence            66  45778888763

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.72  E-value=2.8  Score=42.28  Aligned_cols=141  Identities=13%  Similarity=0.060  Sum_probs=89.4

Q ss_pred             CEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC------CCEEEEEECCCeEEEEECCCCc-cceeEe---
Q 009380          296 SKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN------VNTLYFGEGQGGLNIWDVRSRK-SATEWL---  364 (536)
Q Consensus       296 ~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~------~~~l~~g~~dg~i~i~d~~~~~-~~~~~~---  364 (536)
                      ++|+ .+..-..++-.|++.|+..........+ -+.|.|..      +..-++|-.+..|.-.|.|-.. .+....   
T Consensus       480 sli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd  558 (776)
T COG5167         480 SLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD  558 (776)
T ss_pred             ceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence            5544 4555677888899999887776655555 56676643      1234456666677777877432 222111   


Q ss_pred             -ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          365 -LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       365 -~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                       .......|..-...  -++|.+|..|-|++||--...    ....+.+....|..|..+.+|.++++.|. ..|-+-|+
T Consensus       559 Y~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         559 YKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             ccccccccccccccC--ceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence             11122233333332  389999999999999954321    22334466788999999999998888774 45777775


Q ss_pred             C
Q 009380          444 V  444 (536)
Q Consensus       444 ~  444 (536)
                      .
T Consensus       632 ~  632 (776)
T COG5167         632 P  632 (776)
T ss_pred             c
Confidence            4

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.48  E-value=9.2  Score=35.71  Aligned_cols=150  Identities=16%  Similarity=0.197  Sum_probs=93.3

Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK  404 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~  404 (536)
                      .....++-.+++ ...+++...|.|--.|.++++....--+....-..|..-||+..++.-.+.  -|.-.|-+++... 
T Consensus        62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt~evt-  137 (353)
T COG4257          62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKTLEVT-  137 (353)
T ss_pred             CCccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc--eeEEecCcccceE-
Confidence            455677888888 788888888999999999998654444556666778888988655543332  4666666554311 


Q ss_pred             CCcceeecccCceeEEEEccCCCeEEEEeC---------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380          405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC  475 (536)
Q Consensus       405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  475 (536)
                      ...+....-........|++.|++-+|+..         .+.|++|+...+.-        ..+       ++-.|+|..
T Consensus       138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~g--------pyG-------i~atpdGsv  202 (353)
T COG4257         138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGG--------PYG-------ICATPDGSV  202 (353)
T ss_pred             EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCC--------Ccc-------eEECCCCcE
Confidence            112222234567888999999998888752         13355555432111        111       334677777


Q ss_pred             EEEEcCCCcEEEEcCCcc
Q 009380          476 VFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~~~  493 (536)
                      .++.-.++.|-..|..++
T Consensus       203 wyaslagnaiaridp~~~  220 (353)
T COG4257         203 WYASLAGNAIARIDPFAG  220 (353)
T ss_pred             EEEeccccceEEcccccC
Confidence            666555555665565554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.47  E-value=10  Score=36.13  Aligned_cols=223  Identities=10%  Similarity=0.075  Sum_probs=118.2

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCC------C-eEEEeec------CCCceeEEEecCCC-----------CC
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK------E-VFDLVYS------SEYAVFSLSQQPNN-----------VN  338 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~------~-~~~~~~~------~~~~i~~l~~~~~~-----------~~  338 (536)
                      ..-+.|+++|.+ .+.++...-+...+||...      . .+.....      .....+.+.|+...           ..
T Consensus        23 ~N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        23 RNAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             cccceeEecCCC-CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            345789999988 7777777788999999871      1 1221111      23456777776432           23


Q ss_pred             EEEEEECCCeEEEEECCCCcc-----ceeEe-ccCCCe-EEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCC-----
Q 009380          339 TLYFGEGQGGLNIWDVRSRKS-----ATEWL-LHEARI-NTIDFNPR--NPNIMATSSTDGTACIWDLRSMATDK-----  404 (536)
Q Consensus       339 ~l~~g~~dg~i~i~d~~~~~~-----~~~~~-~h~~~i-~~i~~~p~--~~~~l~s~s~dg~i~iwdl~~~~~~~-----  404 (536)
                      .++.+++||+|.-|...-...     ...+. .....| ..+++...  +..+.++--..++|.|||-.-.....     
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            468889999999998543322     11222 112333 34555432  33344444567999999855421000     


Q ss_pred             -C------Ccc--eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC-ceeeeeE-EEEcC-C
Q 009380          405 -P------EPM--KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG-RWISSFR-AIWGW-D  472 (536)
Q Consensus       405 -~------~~~--~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~-~~~s~-~  472 (536)
                       +      .+.  ...+..--|+-..-.++++.=+.+..-|.|-+||+. +..++.+....... .|-..+. ..|.. .
T Consensus       182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~s  260 (336)
T TIGR03118       182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLS  260 (336)
T ss_pred             CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCC
Confidence             0      000  000111112222223333333333445689999974 55555553322111 1111110 12322 3


Q ss_pred             CCEEEEEcCCCcEEEEcCCccccceeccCCceeee
Q 009380          473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAI  507 (536)
Q Consensus       473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~  507 (536)
                      |.+|+---.||+|.+||..+++.+..+.......+
T Consensus       261 g~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi  295 (336)
T TIGR03118       261 GALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPV  295 (336)
T ss_pred             CCeEEeecCCceeEEecCCCCceeeeecCCCCCeE
Confidence            44555445689999999999988888876544444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.46  E-value=13  Score=37.36  Aligned_cols=26  Identities=4%  Similarity=-0.052  Sum_probs=16.9

Q ss_pred             CEEEEEECC-----------CeEEEEECCCCeEEEee
Q 009380          296 SKIFTSCYD-----------GLIRLMDAEKEVFDLVY  321 (536)
Q Consensus       296 ~~l~s~s~d-----------g~I~vwd~~~~~~~~~~  321 (536)
                      .+++.|+..           ..+..||..+.....+.
T Consensus        86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~  122 (376)
T PRK14131         86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLD  122 (376)
T ss_pred             EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCC
Confidence            566666653           24778898887665543

>PRK13684 Ycf48-like protein; Provisional

Probab=92.42  E-value=12  Score=36.89  Aligned_cols=278  Identities=9%  Similarity=-0.032  Sum_probs=124.7

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceE-EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY-LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      ...+++|.|..  +..-+++|. +|.  ||...+.......+. .+......+.++.|.+.  ..++ ++..|.|.. ..
T Consensus        45 ~~~l~~v~F~d--~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~--~~~~-~G~~g~i~~-S~  115 (334)
T PRK13684         45 EANLLDIAFTD--PNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD--EGWI-VGQPSLLLH-TT  115 (334)
T ss_pred             CCceEEEEEeC--CCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC--cEEE-eCCCceEEE-EC
Confidence            45789999986  566677775 453  444433211111111 11112234777888643  3344 344554332 22


Q ss_pred             CCC-eEEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEe
Q 009380          313 EKE-VFDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       313 ~~~-~~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +.+ ......   ........+.....+  .++.++..|.|..=+ ..++.=..+. .-...+.++.+.|++ .+++++ 
T Consensus       116 DgG~tW~~~~~~~~~~~~~~~i~~~~~~--~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g-~~v~~g-  190 (334)
T PRK13684        116 DGGKNWTRIPLSEKLPGSPYLITALGPG--TAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG-KYVAVS-  190 (334)
T ss_pred             CCCCCCeEccCCcCCCCCceEEEEECCC--cceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC-eEEEEe-
Confidence            222 222211   011111222222222  233344455443322 1233211111 224568899999966 455554 


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                      ..|.+..- .+.+.  .............++++.+.+++..++++ ..|.+.+=....+..-..+.... .......+.+
T Consensus       191 ~~G~i~~s-~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~-~~~~~~l~~v  265 (334)
T PRK13684        191 SRGNFYST-WEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPE-ITNGYGYLDL  265 (334)
T ss_pred             CCceEEEE-cCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCc-cccccceeeE
Confidence            46655432 11211  00111122345688999999998876654 46765432233333222221110 1011123346


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          468 IWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       468 ~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .+.+++..+++| .+|.|. .....++.-..+.. .........+.+.. + +.....+..|.|.-|+
T Consensus       266 ~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~-~~~~~~G~~G~il~~~  329 (334)
T PRK13684        266 AYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-P-EKGFVLGQRGVLLRYV  329 (334)
T ss_pred             EEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-C-CceEEECCCceEEEec
Confidence            678877766555 466554 44555544333321 11111112333332 2 3445566678887775

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.31  E-value=0.71  Score=29.65  Aligned_cols=32  Identities=34%  Similarity=0.340  Sum_probs=27.4

Q ss_pred             CceeEEEecCCCC--CEEEEEECCCeEEEEECCC
Q 009380          325 YAVFSLSQQPNNV--NTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       325 ~~i~~l~~~~~~~--~~l~~g~~dg~i~i~d~~~  356 (536)
                      +.|.++.|+|...  .+|+.+-..|.|.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3688999998764  6888888899999999995

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.20  E-value=21  Score=39.11  Aligned_cols=74  Identities=12%  Similarity=0.115  Sum_probs=52.2

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCC----------Ce----EEEe--------ecCCCceeEEEecCCC--CC
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----------EV----FDLV--------YSSEYAVFSLSQQPNN--VN  338 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~----------~~----~~~~--------~~~~~~i~~l~~~~~~--~~  338 (536)
                      -.|..|.++|+| .+|+..|..| |.|..+..          +.    +...        ......|..+.|+|.+  ..
T Consensus        85 f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            468899999999 8888888766 44544421          11    1111        1234678999999974  46


Q ss_pred             EEEEEECCCeEEEEECCCCc
Q 009380          339 TLYFGEGQGGLNIWDVRSRK  358 (536)
Q Consensus       339 ~l~~g~~dg~i~i~d~~~~~  358 (536)
                      .|++=+.|+++++||+....
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            88888999999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=92.09  E-value=13  Score=36.69  Aligned_cols=72  Identities=8%  Similarity=-0.090  Sum_probs=34.1

Q ss_pred             CccEEEEEeCC-CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----------CeEEEEECCC
Q 009380          247 DVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----------GLIRLMDAEK  314 (536)
Q Consensus       247 ~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----------g~I~vwd~~~  314 (536)
                      ++.+.++|+.. ..+..+|+.........+..+......-.+++. -++ .+.+.|+.+           ..+..||..+
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~~~-~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~   94 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-IDG-KLYVFGGIGKANSEGSPQVFDDVYRYDPKK   94 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE-ECC-EEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence            44566666543 456667764321112222222111111112222 234 666667653           2477889888


Q ss_pred             CeEEEe
Q 009380          315 EVFDLV  320 (536)
Q Consensus       315 ~~~~~~  320 (536)
                      .....+
T Consensus        95 ~~W~~~  100 (346)
T TIGR03547        95 NSWQKL  100 (346)
T ss_pred             CEEecC
Confidence            776554

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK10115 protease 2; Provisional

Probab=91.84  E-value=23  Score=38.83  Aligned_cols=244  Identities=11%  Similarity=0.009  Sum_probs=120.3

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC------C
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL------G  258 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d------g  258 (536)
                      .+..+.++|||+.++...+..-     .....|.+.++.... .+.....+.-..++|++  |++.|+....+      .
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G-----~E~~~l~v~d~~tg~-~l~~~i~~~~~~~~w~~--D~~~~~y~~~~~~~~~~~  199 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLS-----RRQYGIRFRNLETGN-WYPELLDNVEPSFVWAN--DSWTFYYVRKHPVTLLPY  199 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCC-----cEEEEEEEEECCCCC-CCCccccCcceEEEEee--CCCEEEEEEecCCCCCCC
Confidence            3456778999999987633222     222356666764332 11222222225699999  77766555432      3


Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEEC---CCeEEEEECC--CCeEEEeecCCCce-eEEE
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCY---DGLIRLMDAE--KEVFDLVYSSEYAV-FSLS  331 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~---dg~I~vwd~~--~~~~~~~~~~~~~i-~~l~  331 (536)
                      .|..+++.+.......+  +........-..+.+ ++ .+++..+.   ++.+.+++..  .+....+......+ ..+.
T Consensus       200 ~v~~h~lgt~~~~d~lv--~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  276 (686)
T PRK10115        200 QVWRHTIGTPASQDELV--YEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD  276 (686)
T ss_pred             EEEEEECCCChhHCeEE--EeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE
Confidence            67788888743222333  333223333223333 55 65554433   4578888853  33333333333222 2222


Q ss_pred             ecCCCCCEEEEEECC----CeEEEEECCCCccceeEecc-C-CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          332 QQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATEWLLH-E-ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       332 ~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~h-~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                       +..  ..|+.-+..    ..|...++........+..+ . ..|..+.+..  ..++++...+|.-+++-+....   .
T Consensus       277 -~~~--~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~~~~~~---~  348 (686)
T PRK10115        277 -HYQ--HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQINRKT---R  348 (686)
T ss_pred             -eCC--CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEEEcCCC---C
Confidence             222  344444432    24555555532223344445 3 3688888873  3677777777776655443211   0


Q ss_pred             Ccceee-cccCceeEEEEc--cCCC-eEEEEeC---CCcEEEEeCCCCC
Q 009380          406 EPMKVL-SHKRAVHSAYFS--PSGS-SLATTSF---DDTIGIWSGVNFE  447 (536)
Q Consensus       406 ~~~~~~-~~~~~v~~l~~s--p~g~-~l~t~s~---dg~I~iwd~~~~~  447 (536)
                      ....+. .....+..+.++  +++. ++++.+.   -+.+..||+.+.+
T Consensus       349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        349 EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            112211 222223333444  3333 4444332   3568888887654

>PRK13684 Ycf48-like protein; Provisional

Probab=91.32  E-value=16  Score=36.02  Aligned_cols=157  Identities=9%  Similarity=0.019  Sum_probs=78.9

Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeE-eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEW-LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA  401 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~  401 (536)
                      ...+.++.+.+++  .++..+..|.+..- ...+ +.-... ..-...++++.+.+++ ..++++ ..|.+.+=....+.
T Consensus       172 ~g~~~~i~~~~~g--~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDG--KYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCC--eEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCC-CEEEEe-cCCEEEEccCCCCC
Confidence            4578899999876  44455556655542 1122 211112 2334678999999977 455554 46766532233322


Q ss_pred             CCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          402 TDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       402 ~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                      .-.............+.++.+.|++..+ .++.+|.|. .....++.-..........  -....+.|..++..++ .+.
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~-~~G~~G~v~-~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~-~G~  321 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIW-AGGGNGTLL-VSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFV-LGQ  321 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEE-EEcCCCeEE-EeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEE-ECC
Confidence            1010111101123457889999987754 455667554 3444444333332101111  1222345555555555 445


Q ss_pred             CCcEEEEcC
Q 009380          482 TRTVEVISP  490 (536)
Q Consensus       482 dg~I~v~d~  490 (536)
                      .|.|-.|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            677776653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.27  E-value=11  Score=34.07  Aligned_cols=102  Identities=15%  Similarity=0.139  Sum_probs=65.4

Q ss_pred             CEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECC---C---eEEEE-ECCCC----ccce-
Q 009380          296 SKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ---G---GLNIW-DVRSR----KSAT-  361 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d---g---~i~i~-d~~~~----~~~~-  361 (536)
                      +.|+.+...+.|.+|++...  .....+..-+.|..+.++..| ++|++--.+   .   .+++| +.+..    .++. 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            45655567888999999843  445556667899999999998 788875432   2   55665 22211    1111 


Q ss_pred             --------------------eEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          362 --------------------EWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       362 --------------------~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                                          .+. .-...+.+|+..|..+++++.+  ++.+.+|.+...
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence                                111 1234677888888776655544  468999988764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.17  E-value=16  Score=35.89  Aligned_cols=241  Identities=13%  Similarity=0.049  Sum_probs=113.3

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe----ccCCCCEEEEEEecC--CCCEEEEEECC-----
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF----RTHLGPISGIVTQQY--CLSKIFTSCYD-----  304 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~~~~--~~~~l~s~s~d-----  304 (536)
                      .-++|+|.|  +|.++++ ...|.|++++... .. ...+..+    .........++++|+  ...+|+.....     
T Consensus         3 ~P~~~a~~p--dG~l~v~-e~~G~i~~~~~~g-~~-~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    3 NPRSMAFLP--DGRLLVA-ERSGRIWVVDKDG-SL-KTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             SEEEEEEET--TSCEEEE-ETTTEEEEEETTT-EE-CEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             CceEEEEeC--CCcEEEE-eCCceEEEEeCCC-cC-cceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            357899999  8877665 5599999999332 10 1122222    233456899999995  11344444331     


Q ss_pred             ----CeEEEEECCCC--e---EEE---ee-c---CCCceeEEEecCCCCCEEEEEECC-------------CeEEEEECC
Q 009380          305 ----GLIRLMDAEKE--V---FDL---VY-S---SEYAVFSLSQQPNNVNTLYFGEGQ-------------GGLNIWDVR  355 (536)
Q Consensus       305 ----g~I~vwd~~~~--~---~~~---~~-~---~~~~i~~l~~~~~~~~~l~~g~~d-------------g~i~i~d~~  355 (536)
                          ..|.-|....+  .   ...   .. .   ....-..|.|.|++ .+.++.+..             |.|.-.+..
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEeccc
Confidence                23444544332  1   111   11 1   23456679999998 444443322             334444432


Q ss_pred             CCc-------------cceeEe-ccCCCeEEEEEecCCCCEEEE-EeCCCcEEEEeCCCCCC------------------
Q 009380          356 SRK-------------SATEWL-LHEARINTIDFNPRNPNIMAT-SSTDGTACIWDLRSMAT------------------  402 (536)
Q Consensus       356 ~~~-------------~~~~~~-~h~~~i~~i~~~p~~~~~l~s-~s~dg~i~iwdl~~~~~------------------  402 (536)
                       ++             ....+. ++ .....++|+|....++++ .+.++.=.|.-+..+..                  
T Consensus       157 -G~~p~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~  234 (331)
T PF07995_consen  157 -GSIPADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG  234 (331)
T ss_dssp             -SSB-TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred             -CcCCCCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence             21             111121 22 234579999972234333 22333223332333210                  


Q ss_pred             ------CCCCcceeecccCceeEEEEcc-------CCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCceeeeeEEE
Q 009380          403 ------DKPEPMKVLSHKRAVHSAYFSP-------SGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGRWISSFRAI  468 (536)
Q Consensus       403 ------~~~~~~~~~~~~~~v~~l~~sp-------~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~  468 (536)
                            ....+.....+...+..+.|..       .|.+|++.-..+.|....+.....+.... .....+..  ...+.
T Consensus       235 ~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r--~~~v~  312 (331)
T PF07995_consen  235 DAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGR--PRDVA  312 (331)
T ss_dssp             TGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS---EEEEE
T ss_pred             cccCCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCC--ceEEE
Confidence                  0011222334556777777764       34456555556677777775443322211 11222212  22366


Q ss_pred             EcCCCCEEEEEcCCCcEE
Q 009380          469 WGWDDSCVFIGNMTRTVE  486 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~  486 (536)
                      +.|||.++++-..+|.|.
T Consensus       313 ~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  313 QGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EETTSEEEEEE-TTTTEE
T ss_pred             EcCCCeEEEEECCCCeEe
Confidence            788888877777777663

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.89  E-value=1.4  Score=47.10  Aligned_cols=119  Identities=12%  Similarity=0.106  Sum_probs=80.7

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC----------CC------CCCceEEeccCCCCEEEEEEe--cCCC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ----------QD------EDNGIYLFRTHLGPISGIVTQ--QYCL  295 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~----------~~------~~~~~~~~~~h~~~V~~l~~~--~~~~  295 (536)
                      +..|+.|...-..+...|+.+..||.|.+|.+..-          ..      ...+...+. ....+++++++  ... 
T Consensus       100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~-  177 (717)
T PF08728_consen  100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS-  177 (717)
T ss_pred             CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc-
Confidence            34577777766557789999999999999976420          00      001122222 34578999998  665 


Q ss_pred             CEEEEEECCCeEEEEECCC--CeEEE--eecCCCceeEEEecCCC--CC---EEEEEECCCeEEEEEC
Q 009380          296 SKIFTSCYDGLIRLMDAEK--EVFDL--VYSSEYAVFSLSQQPNN--VN---TLYFGEGQGGLNIWDV  354 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~--~~~~~--~~~~~~~i~~l~~~~~~--~~---~l~~g~~dg~i~i~d~  354 (536)
                      .+||+++....|.||-...  .+...  ...+...|-+|+|.++.  +.   .+++++-.|.+.+|++
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7888888888888886543  22111  22356789999997754  22   6778889999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=90.63  E-value=15  Score=34.47  Aligned_cols=179  Identities=12%  Similarity=0.099  Sum_probs=102.9

Q ss_pred             eEEEEEEecCCccEEEEEeCCC--cEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLG--NITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...+.|..  ++.++-+.+.-|  .|+.+|+.+    ++......- ..----.++...+  ....-.=.++...+||..
T Consensus        47 TQGL~~~~--~g~LyESTG~yG~S~l~~~d~~t----g~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   47 TQGLEFLD--DGTLYESTGLYGQSSLRKVDLET----GKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             EEEEEEEE--TTEEEEEECSTTEEEEEEEETTT----SSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETT
T ss_pred             CccEEecC--CCEEEEeCCCCCcEEEEEEECCC----CcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccc
Confidence            45677766  788888877777  688899887    443332221 1112234444432  333333457889999999


Q ss_pred             CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc-----CCCeEEEEEecCCCCEEEEEeC
Q 009380          314 KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-----EARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       314 ~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-----~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      +-+....+.....=+.++.  ++ ..|+.......|+++|..+.+....+...     -..++-+.|.. | .+.|=.=.
T Consensus       119 tl~~~~~~~y~~EGWGLt~--dg-~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~-G-~IyANVW~  193 (264)
T PF05096_consen  119 TLKKIGTFPYPGEGWGLTS--DG-KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYIN-G-KIYANVWQ  193 (264)
T ss_dssp             TTEEEEEEE-SSS--EEEE--CS-SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEET-T-EEEEEETT
T ss_pred             cceEEEEEecCCcceEEEc--CC-CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEc-C-EEEEEeCC
Confidence            8877777776677788884  34 45565666669999999888776665522     23466677763 3 44444444


Q ss_pred             CCcEEEEeCCCCCCCCCCcceee----------------cccCceeEEEEccCCCeEEEEe
Q 009380          389 DGTACIWDLRSMATDKPEPMKVL----------------SHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~----------------~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      ...|...|..++.     +....                ....-.+.|+|+|....|+..+
T Consensus       194 td~I~~Idp~tG~-----V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  194 TDRIVRIDPETGK-----VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             SSEEEEEETTT-B-----EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEeCCCCe-----EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            5566666776653     11111                1134678999999766665555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.43  E-value=13  Score=33.53  Aligned_cols=139  Identities=13%  Similarity=0.159  Sum_probs=82.5

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---C---eEEEE-ECCCC------
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---G---LIRLM-DAEKE------  315 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---g---~I~vw-d~~~~------  315 (536)
                      +.|+.+...+.|.+|++....  ......|..- +.|..+.++..| ++|+|--.+   .   .+|+| +++..      
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~--~~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~  104 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEE--CPLLCTFSTV-GRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP  104 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCC--CceeEEEcch-hheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence            455444566789999998432  5666677655 789999999998 999987443   2   56665 22211      


Q ss_pred             eEEEee---------------------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ce-----eE-----
Q 009380          316 VFDLVY---------------------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-AT-----EW-----  363 (536)
Q Consensus       316 ~~~~~~---------------------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~-----~~-----  363 (536)
                      ....+.                     ....++.+++..|..++ |++|+.+ .+.+|.+..... ..     .|     
T Consensus       105 v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~~~-~l~lf~l~~~~~~~~~~~~lDFe~~l~  182 (215)
T PF14761_consen  105 VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGCGN-KLVLFTLKYQTIQSEKFSFLDFERSLI  182 (215)
T ss_pred             EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEcCC-EEEEEEEEEEEEecccccEEechhhhh
Confidence            111111                     22346778888887655 4455554 888887764322 11     11     


Q ss_pred             eccC-CCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380          364 LLHE-ARINTIDFNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       364 ~~h~-~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                      ..|. -....+++..   .++|..+ +-.++++.+
T Consensus       183 ~~~~~~~p~~v~ic~---~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  183 DHIDNFKPTQVAICE---GYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             heecCceEEEEEEEe---eEEEEec-CCEEEEEEE
Confidence            1122 2256677763   4777776 446666654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.01  E-value=9.9  Score=31.46  Aligned_cols=116  Identities=12%  Similarity=0.061  Sum_probs=70.2

Q ss_pred             EEEEecCCccEEEEEeCCCcEEEEECCCCCC----CCCceEEeccCCCCEEEEEEec----CCCCEEEEEECCCeEEEEE
Q 009380          240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQD----EDNGIYLFRTHLGPISGIVTQQ----YCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~----~~~~~~~~~~h~~~V~~l~~~~----~~~~~l~s~s~dg~I~vwd  311 (536)
                      -.|..  ...-|++++.-|.|.|++......    ....+ .+..-...|++|+-.+    ++.+.|+.|+ ...|..||
T Consensus         4 GkfDG--~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    4 GKFDG--VHPCLACATTGGKVFIHNPHERGQRTGRQDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             EEeCC--CceeEEEEecCCEEEEECCCccccccccccCce-eEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            34544  456788888899999998765321    01222 2333456788887554    2335666666 56689999


Q ss_pred             CCCCeEEEeecCCCceeEEEecCCC--CCEEEEEECCCeEEEEECCCCcc
Q 009380          312 AEKEVFDLVYSSEYAVFSLSQQPNN--VNTLYFGEGQGGLNIWDVRSRKS  359 (536)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~l~~~~~~--~~~l~~g~~dg~i~i~d~~~~~~  359 (536)
                      +....-.........|.++.+-.-+  +.-++..+.+..|.-||..-.+.
T Consensus        80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             cccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            9887655444555677777663211  12344444456888888654443

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=9.3  Score=38.23  Aligned_cols=139  Identities=14%  Similarity=0.167  Sum_probs=85.5

Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-----CCCceeEE
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSL  330 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l  330 (536)
                      ..|.+.=|-+..... ...+..-....++|.+|.|++|+ +.|+.--.|.+|.+++...........     ....|...
T Consensus        41 rSggatgvvvkgpnd-DVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF  118 (657)
T KOG2377|consen   41 RSGGATGVVVKGPND-DVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGF  118 (657)
T ss_pred             ecCCeeEEEEeCCCC-CCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEE
Confidence            345566666654331 22333333456799999999998 999999999999999985443322221     23458899


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCC
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRS  399 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~  399 (536)
                      +|..+  .-++.-+..| +-+|-.... ..++..+.|.-.|+-..|+++-.-.|++.+ ..+++.=+-+++
T Consensus       119 ~W~~s--~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  119 CWTSS--TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             EEecC--eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence            99876  3455555553 555554432 335556678888888899986643344433 333333333333

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.87  E-value=0.042  Score=54.50  Aligned_cols=143  Identities=13%  Similarity=0.110  Sum_probs=98.0

Q ss_pred             EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ....|-|  .+.-++.++.+..|..||-..     +..... .-++....++|..+++..++.+-..+.+.+||+.+...
T Consensus        38 i~~~w~~--e~~nlavaca~tiv~~YD~ag-----q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt  109 (615)
T KOG2247|consen   38 IIHRWRP--EGHNLAVACANTIVIYYDKAG-----QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT  109 (615)
T ss_pred             ceeeEec--CCCceehhhhhhHHHhhhhhc-----ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence            3456777  554577777788888888652     222222 23455667889888866777778889999999987643


Q ss_pred             EEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          318 DLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       318 ~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ..+. +....-.-+.|++.. ..++.|...|.+.|++..+.+.+-....|...+.+++|.+.+  +.+.++.|..
T Consensus       110 qqLE~gg~~s~sll~wsKg~-~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~~  181 (615)
T KOG2247|consen  110 QQLESGGTSSKSLLAWSKGT-PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILCDCDNT  181 (615)
T ss_pred             HHHhccCcchHHHHhhccCC-ccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeecCcHHH
Confidence            3222 222222226788776 577888899999999988877665555599999999999965  5666655544

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.83  E-value=24  Score=39.13  Aligned_cols=67  Identities=10%  Similarity=0.150  Sum_probs=41.5

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceE-----Eec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIY-----LFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-----~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .|+.|..|+.+|.+.+|.+...........     .+.  -+..+|..+...+.- ..++.- .|+.|.++++.+-
T Consensus        25 ~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~-~~ll~l-~dsqi~~~~l~~~   98 (877)
T KOG2063|consen   25 YGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASL-ELLLIL-SDSQIAVHKLPEL   98 (877)
T ss_pred             hCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchh-cchhee-cCCcceeeecCcc
Confidence            568999999999999999986422111100     011  124667777666654 444444 4777888887654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=89.50  E-value=16  Score=33.27  Aligned_cols=197  Identities=11%  Similarity=0.087  Sum_probs=104.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEec-CCCCCEEEEEECC-CeEEEEECCC--CccceeEe-----cc
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ-PNNVNTLYFGEGQ-GGLNIWDVRS--RKSATEWL-----LH  366 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~-~~~~~~l~~g~~d-g~i~i~d~~~--~~~~~~~~-----~h  366 (536)
                      .+++.--..|.|.-||+.+.+.....-...+..++.+- .+++..++++... -.|.-||...  -....++.     ..
T Consensus        28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k  107 (310)
T KOG4499|consen   28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK  107 (310)
T ss_pred             eEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence            56666666777888998876543332222223333332 2233344444433 2344566332  22222211     11


Q ss_pred             CCCeEEEEEecCCCCEEEEEeC----------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE-EeCC
Q 009380          367 EARINTIDFNPRNPNIMATSST----------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT-TSFD  435 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~----------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t-~s~d  435 (536)
                      ....+.-..+|+| +++ .|..          .|.++.|-...      ++..+...-.--+.++|+.+.+.+.. -+.+
T Consensus       108 knR~NDgkvdP~G-ryy-~GtMad~~~~le~~~g~Ly~~~~~h------~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln  179 (310)
T KOG4499|consen  108 KNRLNDGKVDPDG-RYY-GGTMADFGDDLEPIGGELYSWLAGH------QVELIWNCVGISNGLAWDSDAKKFYYIDSLN  179 (310)
T ss_pred             hcccccCccCCCC-cee-eeeeccccccccccccEEEEeccCC------CceeeehhccCCccccccccCcEEEEEccCc
Confidence            3445666778887 443 2321          14455554432      22233333344467889887665544 4566


Q ss_pred             CcEEEEe--CCCCC-----cceEEec------cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          436 DTIGIWS--GVNFE-----NTSMIHH------NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       436 g~I~iwd--~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      -.|.-||  ..++.     .+..++.      ..+.+       .+...+|.+.++.-..++|..+|..+|+.+.++.-+
T Consensus       180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDG-------m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP  252 (310)
T KOG4499|consen  180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDG-------MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP  252 (310)
T ss_pred             eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCc-------ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence            6787787  44432     2222222      11222       222457777777777789999999999999998876


Q ss_pred             ceeee
Q 009380          503 YISAI  507 (536)
Q Consensus       503 ~~~~~  507 (536)
                      .....
T Consensus       253 t~qit  257 (310)
T KOG4499|consen  253 TPQIT  257 (310)
T ss_pred             CCceE
Confidence            54444

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.48  E-value=7.1  Score=38.95  Aligned_cols=193  Identities=13%  Similarity=0.099  Sum_probs=0.0

Q ss_pred             ecCCccEEEEEeCCCcEEEEECC---------------------------------------------------------
Q 009380          244 PCSDVRMVVAGSKLGNITFWNLD---------------------------------------------------------  266 (536)
Q Consensus       244 p~~~~~~l~tg~~dg~v~iwd~~---------------------------------------------------------  266 (536)
                      |  ...+++.|..||.+.+...+                                                         
T Consensus       125 ~--gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L  202 (733)
T COG4590         125 P--GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQIL  202 (733)
T ss_pred             C--CCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhh


Q ss_pred             --CCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee--------EEEecCCC
Q 009380          267 --SQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF--------SLSQQPNN  336 (536)
Q Consensus       267 --~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~--------~l~~~~~~  336 (536)
                        +.....+.+..+..--..|..+-..|++ +.|+.-+. ..+.++++.+.......-.+....        .+.....+
T Consensus       203 ~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg  280 (733)
T COG4590         203 RGDRTTQQEIIRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGG  280 (733)
T ss_pred             hcccCchhhhhhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCc


Q ss_pred             CCEEEEEECCCeEEEE-ECCCCcc-----ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380          337 VNTLYFGEGQGGLNIW-DVRSRKS-----ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       337 ~~~l~~g~~dg~i~i~-d~~~~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                       ..+.++..||-|.-| |.+.+..     ++.++.....+..+.-.... +-|++-+..|++.++.-..     ...+-.
T Consensus       281 -~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~r-kgF~~l~~~G~L~~f~st~-----~~~lL~  353 (733)
T COG4590         281 -FSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNR-KGFYSLYRNGTLQSFYSTS-----EKLLLF  353 (733)
T ss_pred             -eeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccccc-ceEEEEcCCCceeeeeccc-----Ccceeh


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      ...-..+..+++||++.++++-...+ |+++.+.+..+
T Consensus       354 ~~~~~~~~~~~~Sp~~~~Ll~e~~gk-i~~~~l~Nr~P  390 (733)
T COG4590         354 ERAYQAPQLVAMSPNQAYLLSEDQGK-IRLAQLENRNP  390 (733)
T ss_pred             hhhhcCcceeeeCcccchheeecCCc-eEEEEecCCCC

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.26  E-value=2.8  Score=38.48  Aligned_cols=63  Identities=17%  Similarity=0.078  Sum_probs=41.4

Q ss_pred             EecCCCCEEEEEECCCeEEEEECCCCeEEEee---------------cCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380          290 TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY---------------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV  354 (536)
Q Consensus       290 ~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~---------------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~  354 (536)
                      +...+ ++|++.+.+|.+++||+.+++.....               .....|..+.+..+| .-++ .-.+|..+.||.
T Consensus        18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV-~lsng~~y~y~~   94 (219)
T PF07569_consen   18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIV-TLSNGDSYSYSP   94 (219)
T ss_pred             EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEE-EEeCCCEEEecc
Confidence            33445 88999999999999999987653221               234566777777665 3333 334566777765


Q ss_pred             C
Q 009380          355 R  355 (536)
Q Consensus       355 ~  355 (536)
                      .
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PLN02193 nitrile-specifier protein

Probab=89.13  E-value=31  Score=35.92  Aligned_cols=190  Identities=9%  Similarity=0.055  Sum_probs=88.5

Q ss_pred             CEEEEEECC-------CeEEEEECCCCeEEEeecCC-Cc----ee-EEEecCCCCCEEEEEECC-----CeEEEEECCCC
Q 009380          296 SKIFTSCYD-------GLIRLMDAEKEVFDLVYSSE-YA----VF-SLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSR  357 (536)
Q Consensus       296 ~~l~s~s~d-------g~I~vwd~~~~~~~~~~~~~-~~----i~-~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~  357 (536)
                      .+++.|+.+       ..+.+||+.+.......... .+    .. +++.. ++ .+++.|+.+     ..+..||+.+.
T Consensus       177 ~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-~~-~lYvfGG~~~~~~~ndv~~yD~~t~  254 (470)
T PLN02193        177 KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-GS-TLYVFGGRDASRQYNGFYSFDTTTN  254 (470)
T ss_pred             EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-CC-EEEEECCCCCCCCCccEEEEECCCC
Confidence            555666643       34778898887665432111 11    11 12222 22 566667654     35888998875


Q ss_pred             ccce--eEe--ccCCCeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCcc-eeecccCceeEEEEccCCC
Q 009380          358 KSAT--EWL--LHEARINTIDFNPRNPNIMATSSTDG-----TACIWDLRSMATDKPEPM-KVLSHKRAVHSAYFSPSGS  427 (536)
Q Consensus       358 ~~~~--~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg-----~i~iwdl~~~~~~~~~~~-~~~~~~~~v~~l~~sp~g~  427 (536)
                      +-..  .+.  .....-.++...  +.++++.|+.++     .+..||+.+.+-...... ...........+.  -+++
T Consensus       255 ~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~--~~gk  330 (470)
T PLN02193        255 EWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV--VQGK  330 (470)
T ss_pred             EEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--ECCc
Confidence            4321  110  011111223222  335777777543     466788766421000000 0001111111222  2567


Q ss_pred             eEEEEeCC----CcEEEEeCCCCCcceEEec-cCCCCceeeeeEEEEcCCCCEEEEEcCC--------------CcEEEE
Q 009380          428 SLATTSFD----DTIGIWSGVNFENTSMIHH-NNQTGRWISSFRAIWGWDDSCVFIGNMT--------------RTVEVI  488 (536)
Q Consensus       428 ~l~t~s~d----g~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~~gs~d--------------g~I~v~  488 (536)
                      +++.++.+    ..+.+||+.+.+-...-.. ..+..+....  + ..-++++++.|+.+              ..+.+|
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~--~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~  407 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFA--S-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL  407 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeE--E-EEECCEEEEECCccCCccccccCccceeccEEEE
Confidence            77777755    4588999876543222111 0111111111  1 12255677777743              247888


Q ss_pred             cCCccc
Q 009380          489 SPAQRR  494 (536)
Q Consensus       489 d~~~~~  494 (536)
                      |..+.+
T Consensus       408 D~~t~~  413 (470)
T PLN02193        408 DTETLQ  413 (470)
T ss_pred             EcCcCE
Confidence            887653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.08  E-value=3.6  Score=40.99  Aligned_cols=118  Identities=19%  Similarity=0.191  Sum_probs=76.7

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      -.|+|.++.|++  |.+.||+--.+.+|.+++....+........-+..+..|....|+..  .-++..+..| +-+|-.
T Consensus        65 d~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s--~e~A~i~~~G-~e~y~v  139 (657)
T KOG2377|consen   65 DKGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS--TEIAFITDQG-IEFYQV  139 (657)
T ss_pred             CCCceeEEEecc--CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC--eeEEEEecCC-eEEEEE
Confidence            367999999999  99999999999999999986432212223333444566899999876  4555555444 555554


Q ss_pred             C--CCeEEEeecCCCceeEEEecCCCCCEEEEE-E-CCCeEEEEECCC
Q 009380          313 E--KEVFDLVYSSEYAVFSLSQQPNNVNTLYFG-E-GQGGLNIWDVRS  356 (536)
Q Consensus       313 ~--~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g-~-~dg~i~i~d~~~  356 (536)
                      .  ......+..+...|.-..|.++. +.++.+ + ....+.=+.+++
T Consensus       140 ~pekrslRlVks~~~nvnWy~yc~et-~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  140 LPEKRSLRLVKSHNLNVNWYMYCPET-AVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             chhhhhhhhhhhcccCccEEEEcccc-ceEeeeccccccccccEEEee
Confidence            3  34445555677788888888876 443333 3 233444444443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.07  E-value=0.077  Score=52.71  Aligned_cols=145  Identities=10%  Similarity=0.135  Sum_probs=98.7

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW  363 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  363 (536)
                      .-....|.+.+ .-++.++.+..+..||-....... ....+....++|..+++..++.+-..+.+.+||+.+.... ++
T Consensus        36 ~pi~~~w~~e~-~nlavaca~tiv~~YD~agq~~le-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qL  112 (615)
T KOG2247|consen   36 GPIIHRWRPEG-HNLAVACANTIVIYYDKAGQVILE-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QL  112 (615)
T ss_pred             ccceeeEecCC-CceehhhhhhHHHhhhhhcceecc-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HH
Confidence            33456788887 457777778888888866544332 2344667788998888777788888899999999864321 11


Q ss_pred             e---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380          364 L---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG  439 (536)
Q Consensus       364 ~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~  439 (536)
                      .   .|....  +.|++.. ..++.+...|.+.|+...+..    .....-.|...++++++.+.+. .+.++.|..+.
T Consensus       113 E~gg~~s~sl--l~wsKg~-~el~ig~~~gn~viynhgtsR----~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~  183 (615)
T KOG2247|consen  113 ESGGTSSKSL--LAWSKGT-PELVIGNNAGNIVIYNHGTSR----RIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS  183 (615)
T ss_pred             hccCcchHHH--HhhccCC-ccccccccccceEEEeccchh----hhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence            1   122222  6788844 577888888999999987732    3333334999999999999775 44555554443

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.64  E-value=34  Score=38.15  Aligned_cols=174  Identities=9%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             eEEEEECCCCeEEEeecCC-----CceeEEEecCCCCC-EEEEEEC-----------CCeEEEEECCC-CccceeEe--c
Q 009380          306 LIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVN-TLYFGEG-----------QGGLNIWDVRS-RKSATEWL--L  365 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~~-----~~i~~l~~~~~~~~-~l~~g~~-----------dg~i~i~d~~~-~~~~~~~~--~  365 (536)
                      .|++.|..+++......+.     -.+..+.|+..+.. ++++|..           +|.++.|++-. ++.+.-+.  .
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            4778888777665554433     24566666655433 3444332           34466666543 33222221  1


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      -.+.|.  +.+|-.+ ++++|- ...+++||+.+.+...  ..........|+++.+.  +..+++|..-..+.++-.+.
T Consensus       934 ~~~~v~--Ai~~f~~-~~Lagv-G~~l~~YdlG~K~lLR--k~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQG-RVLAGV-GRFLRLYDLGKKKLLR--KCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred             CCccce--EEeccCC-EEEEec-ccEEEEeeCChHHHHh--hhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEec
Confidence            123343  4455454 455443 4689999997642111  01111135567777774  66788887666666655544


Q ss_pred             CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      ..............+|++.+.   --|-..++.+..=|.+.+..+
T Consensus      1006 ~~n~l~~fadD~~pR~Vt~~~---~lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1006 EDNQLIVFADDPVPRHVTALE---LLDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             CCCeEEEEeCCCccceeeEEE---EecCCceeeccccCcEEEEEC
Confidence            433333334455666776533   234456777766677766654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=88.58  E-value=9.7  Score=36.31  Aligned_cols=115  Identities=13%  Similarity=0.056  Sum_probs=67.0

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE------CCCeEEEEECCCCeEEEeecC-----CCc
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC------YDGLIRLMDAEKEVFDLVYSS-----EYA  326 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s------~dg~I~vwd~~~~~~~~~~~~-----~~~  326 (536)
                      ..|++||.....    -...-.+-.+.|+++.|..+. .+++.|.      ....+..||+.+.....+...     .++
T Consensus        16 ~~lC~yd~~~~q----W~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp   90 (281)
T PF12768_consen   16 PGLCLYDTDNSQ----WSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP   90 (281)
T ss_pred             CEEEEEECCCCE----eecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc
Confidence            468999987632    111222345789999998654 6666664      356788999998877655542     378


Q ss_pred             eeEEEecCCCCC-EEEEEE-CC--CeEEEEECCCCcccee-EeccCCCeEEEEEec
Q 009380          327 VFSLSQQPNNVN-TLYFGE-GQ--GGLNIWDVRSRKSATE-WLLHEARINTIDFNP  377 (536)
Q Consensus       327 i~~l~~~~~~~~-~l~~g~-~d--g~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p  377 (536)
                      |..+.+...+.. +.+.|. .+  ..|..||=.+-..+.. .......|..+.+-|
T Consensus        91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~  146 (281)
T PF12768_consen   91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP  146 (281)
T ss_pred             EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence            888887544433 444443 22  3466666443333322 222234555555544

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.27  E-value=27  Score=34.24  Aligned_cols=146  Identities=10%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             CCCEEEEEEecCCCCEEEEEECCCe------EEEEECCC--C---eE-----EEeecCCC--------ceeEEEecCCCC
Q 009380          282 LGPISGIVTQQYCLSKIFTSCYDGL------IRLMDAEK--E---VF-----DLVYSSEY--------AVFSLSQQPNNV  337 (536)
Q Consensus       282 ~~~V~~l~~~~~~~~~l~s~s~dg~------I~vwd~~~--~---~~-----~~~~~~~~--------~i~~l~~~~~~~  337 (536)
                      -+.++.|.+.+++ ..+++.+.+|.      +..+++..  +   ..     ..+....+        ..-+|++.+++ 
T Consensus        19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-   96 (326)
T PF13449_consen   19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-   96 (326)
T ss_pred             cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-
Confidence            3567889998766 67888888887      66666543  1   11     11111111        44578885555 


Q ss_pred             CEEEEEECC------CeEEEEECCCCccceeEe---------------ccCCCeEEEEEecCCCCEEEEEeC-----CC-
Q 009380          338 NTLYFGEGQ------GGLNIWDVRSRKSATEWL---------------LHEARINTIDFNPRNPNIMATSST-----DG-  390 (536)
Q Consensus       338 ~~l~~g~~d------g~i~i~d~~~~~~~~~~~---------------~h~~~i~~i~~~p~~~~~l~s~s~-----dg-  390 (536)
                      .++++.-.+      ..|..++.. |+.+..+.               ......-+|+++|+| +.|+++.+     |+ 
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGP  174 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCc
Confidence            566665556      688888866 65544431               133567899999988 44444433     22 


Q ss_pred             -c-------EEEEeCCCCC---CCCCCcceeec-----ccCceeEEEEccCCCeEEE
Q 009380          391 -T-------ACIWDLRSMA---TDKPEPMKVLS-----HKRAVHSAYFSPSGSSLAT  431 (536)
Q Consensus       391 -~-------i~iwdl~~~~---~~~~~~~~~~~-----~~~~v~~l~~sp~g~~l~t  431 (536)
                       .       ++|+......   ........+..     ....|..+.+-+++++|+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence             1       4554443221   00111111111     3567888888888885554

>PLN02153 epithiospecifier protein

Probab=88.08  E-value=29  Score=34.27  Aligned_cols=101  Identities=7%  Similarity=0.058  Sum_probs=49.5

Q ss_pred             CEEEEEECC-------CeEEEEECCCCeEEEeecCCC--c--e--eEEEecCCCCCEEEEEECC-----CeEEEEECCCC
Q 009380          296 SKIFTSCYD-------GLIRLMDAEKEVFDLVYSSEY--A--V--FSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSR  357 (536)
Q Consensus       296 ~~l~s~s~d-------g~I~vwd~~~~~~~~~~~~~~--~--i--~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~  357 (536)
                      .+++.|+.+       ..+.+||+.+...........  .  .  .+++.. ++ .+++.|+.+     ..+.+||+.+.
T Consensus        34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-GT-KLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             EEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-CC-EEEEECCCCCCCccCcEEEEECCCC
Confidence            455555542       357788888776654332110  0  0  111222 22 566777653     35788898765


Q ss_pred             ccc--eeEe----ccCCCeEEEEEecCCCCEEEEEeCC-----------CcEEEEeCCCC
Q 009380          358 KSA--TEWL----LHEARINTIDFNPRNPNIMATSSTD-----------GTACIWDLRSM  400 (536)
Q Consensus       358 ~~~--~~~~----~h~~~i~~i~~~p~~~~~l~s~s~d-----------g~i~iwdl~~~  400 (536)
                      +-.  ..+.    .....-.+++... + .+++.|+.+           ..|.+||+.+.
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~~~-~-~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~  169 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMASDE-N-HVYVFGGVSKGGLMKTPERFRTIEAYNIADG  169 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEEEC-C-EEEEECCccCCCccCCCcccceEEEEECCCC
Confidence            322  1110    0011112233332 3 567777753           24778888764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=87.79  E-value=29  Score=33.95  Aligned_cols=104  Identities=6%  Similarity=-0.020  Sum_probs=50.0

Q ss_pred             CEEEEEECC-----CeEEEEECCCCccc---eeEeccCCC--eEEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCCC
Q 009380          338 NTLYFGEGQ-----GGLNIWDVRSRKSA---TEWLLHEAR--INTIDFNPRNPNIMATSST-----DGTACIWDLRSMAT  402 (536)
Q Consensus       338 ~~l~~g~~d-----g~i~i~d~~~~~~~---~~~~~h~~~--i~~i~~~p~~~~~l~s~s~-----dg~i~iwdl~~~~~  402 (536)
                      .++++|+.+     ..+..||+.+.+..   ..+..-..+  -.+++... + .+.+.|+.     ...+..||+.+.+-
T Consensus        74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~-~-~iYv~GG~~~~~~~~~v~~yd~~~~~W  151 (323)
T TIGR03548        74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD-G-TLYVGGGNRNGKPSNKSYLFNLETQEW  151 (323)
T ss_pred             EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC-C-EEEEEeCcCCCccCceEEEEcCCCCCe
Confidence            566667654     35777787765431   111111111  12233332 3 56677764     23588889886431


Q ss_pred             CCCCcceeecccCceeEEEEccCCCeEEEEeCCCc----EEEEeCCCC
Q 009380          403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT----IGIWSGVNF  446 (536)
Q Consensus       403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~----I~iwd~~~~  446 (536)
                      ..  ...+. ........+...++++++.|+.++.    +.+||..+.
T Consensus       152 ~~--~~~~p-~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       152 FE--LPDFP-GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             eE--CCCCC-CCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            11  11111 1111122222335777777776542    567887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=87.59  E-value=51  Score=36.59  Aligned_cols=179  Identities=10%  Similarity=0.075  Sum_probs=0.0

Q ss_pred             ccceEEecccccCccccccc---------cCCceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCC------CC--
Q 009380          213 VGSCVDIGSLTLKPENIARI---------MPGRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQD------ED--  272 (536)
Q Consensus       213 ~dg~v~lw~~~~~~~~~~~~---------~~~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~------~~--  272 (536)
                      ..|.+.+|-...+.......         -.+.|+..++.+..+|..+++++.+   +.|++|.+.-.-.      ..  
T Consensus        70 ~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~~~d~q~  149 (753)
T PF11635_consen   70 RNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQQIDPQK  149 (753)
T ss_pred             cCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCccCCCCc


Q ss_pred             -CceEEeccCCC--------------------CEEEEEEec------CCCCEEEEEECCC----eEEEEECCCCeE----
Q 009380          273 -NGIYLFRTHLG--------------------PISGIVTQQ------YCLSKIFTSCYDG----LIRLMDAEKEVF----  317 (536)
Q Consensus       273 -~~~~~~~~h~~--------------------~V~~l~~~~------~~~~~l~s~s~dg----~I~vwd~~~~~~----  317 (536)
                       ..+.....+..                    .++.+.|-+      ..+..|++.+..+    .|..|.+.....    
T Consensus       150 ~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~  229 (753)
T PF11635_consen  150 LPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHP  229 (753)
T ss_pred             CCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccch


Q ss_pred             -----------------------EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE----ec-----
Q 009380          318 -----------------------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW----LL-----  365 (536)
Q Consensus       318 -----------------------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~----~~-----  365 (536)
                                             .........|.+++...-+ ..++....||+|.++|..+.+.+...    ..     
T Consensus       230 ~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~  308 (753)
T PF11635_consen  230 AFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVT  308 (753)
T ss_pred             hhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccc


Q ss_pred             ----------cCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          366 ----------HEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       366 ----------h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                                +...+..++|+|.+ ..++.-..+|.+.
T Consensus       309 s~~~~Gf~fp~~~~~~~vafSPt~-c~~v~~~~~~~~~  345 (753)
T PF11635_consen  309 SLFQAGFHFPCIQPPLHVAFSPTM-CSLVQIDEDGKTK  345 (753)
T ss_pred             cccccccccccCCCCceEEECccc-ceEEEEecCCCce

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.54  E-value=33  Score=34.33  Aligned_cols=196  Identities=14%  Similarity=0.107  Sum_probs=101.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccC--CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC-
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH--LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY-  325 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~-  325 (536)
                      ..+.++..+|.|.-.|..+.    ..+.....-  ...+.+-.+..+|  .|+.++.+|.+..+|..++.....+.... 
T Consensus        69 g~v~~~~~~G~i~A~d~~~g----~~~W~~~~~~~~~~~~~~~~~~~G--~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTG----LVKWSYPLLGAVAQLSGPILGSDG--KIYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCC----cEEecccCcCcceeccCceEEeCC--eEEEecccceEEEEECCCCcEEEEEecCCC
Confidence            34555577777777777663    222211111  1122222233354  58899999999999998887776665544 


Q ss_pred             -ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC---CCeEEEEEecCCCCEEEEEeC--CCcEEEEeCCC
Q 009380          326 -AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE---ARINTIDFNPRNPNIMATSST--DGTACIWDLRS  399 (536)
Q Consensus       326 -~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~---~~i~~i~~~p~~~~~l~s~s~--dg~i~iwdl~~  399 (536)
                       .+..-....+  ..++.++.+|.+...|..++..........   ..+..--... . ..+..+..  ++.+.-.|..+
T Consensus       143 ~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~-~-~~vy~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         143 PYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA-S-GTVYVGSDGYDGILYALNAED  218 (370)
T ss_pred             eEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee-c-ceEEEecCCCcceEEEEEccC
Confidence             1222222223  356666678999999998888765544211   1111111112 2 24444544  55566667766


Q ss_pred             CCCCCCCcc-eeecccCc--eeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEec
Q 009380          400 MATDKPEPM-KVLSHKRA--VHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       400 ~~~~~~~~~-~~~~~~~~--v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~  454 (536)
                      +........ ...+....  ...+..-+  .+..++.++.++.+...|..+++.+..+..
T Consensus       219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            542211100 01111100  00111111  122346667778888888888888777754

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=87.31  E-value=32  Score=33.98  Aligned_cols=12  Identities=8%  Similarity=0.047  Sum_probs=8.3

Q ss_pred             CcEEEEeCCCCC
Q 009380          390 GTACIWDLRSMA  401 (536)
Q Consensus       390 g~i~iwdl~~~~  401 (536)
                      ..+.+||..+.+
T Consensus       168 ~~v~~YDp~t~~  179 (346)
T TIGR03547       168 KNVLSYDPSTNQ  179 (346)
T ss_pred             ceEEEEECCCCc
Confidence            457888887643

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.11  E-value=3.7  Score=37.70  Aligned_cols=63  Identities=17%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCC--cceee--------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPE--PMKVL--------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~--~~~~~--------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      +++++-+.+|.+++||+.+.+.....  +..+.        .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus        23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            67888889999999999987632211  11111        3557788999998898777665 5788999864

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.32  E-value=35  Score=35.54  Aligned_cols=106  Identities=20%  Similarity=0.247  Sum_probs=55.4

Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc----eeEEEecCCCCCEEEEEE--------------CCCeE
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA----VFSLSQQPNNVNTLYFGE--------------GQGGL  349 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~----i~~l~~~~~~~~~l~~g~--------------~dg~i  349 (536)
                      +...++| .+++..+  ..+..+|+...... .+.....    -..+...|+| ++|+.+.              .| .|
T Consensus       153 ~~~l~nG-~ll~~~~--~~~~e~D~~G~v~~-~~~l~~~~~~~HHD~~~l~nG-n~L~l~~~~~~~~~~~~~~~~~D-~I  226 (477)
T PF05935_consen  153 FKQLPNG-NLLIGSG--NRLYEIDLLGKVIW-EYDLPGGYYDFHHDIDELPNG-NLLILASETKYVDEDKDVDTVED-VI  226 (477)
T ss_dssp             EEE-TTS--EEEEEB--TEEEEE-TT--EEE-EEE--TTEE-B-S-EEE-TTS--EEEEEEETTEE-TS-EE---S--EE
T ss_pred             eeEcCCC-CEEEecC--CceEEEcCCCCEEE-eeecCCcccccccccEECCCC-CEEEEEeecccccCCCCccEecC-EE
Confidence            5667776 5555444  77888888755332 2322221    2456677887 7777776              23 46


Q ss_pred             EEEECCCCccceeEec--cC-------------------------CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          350 NIWDVRSRKSATEWLL--HE-------------------------ARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~--h~-------------------------~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      ..+| .+|+.+..+..  |-                         -.+++|.+.+.+..+++++-.-..|...|.+++
T Consensus       227 vevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  227 VEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             EEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             EEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence            6667 67766555431  10                         137899999955456666655557888886664

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.01  E-value=11  Score=42.80  Aligned_cols=152  Identities=16%  Similarity=0.204  Sum_probs=87.6

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE--------ecCCCCEEEEEECCCeEE
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT--------QQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~--------~~~~~~~l~s~s~dg~I~  308 (536)
                      -+.+-+.|  .-.... -+.|+.+.+|+.++    ......+.+-...|..+..        .|.= ++++..+.--.|.
T Consensus        81 ~~~mGiFp--eI~RaW-iTiDn~L~lWny~~----~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I-qhlLvvaT~~ei~  152 (1311)
T KOG1900|consen   81 KTDMGIFP--EIGRAW-ITIDNNLFLWNYES----DNELAEYDGLSHTILKVGLVKPKPGVFVPEI-QHLLVVATPVEIV  152 (1311)
T ss_pred             eeeeccch--hhcceE-EEeCCeEEEEEcCC----CCccccccchhhhheeeeeecCCCCcchhhh-heeEEecccceEE
Confidence            34455556  222222 23577999999998    4455556665666666653        2332 3444444455566


Q ss_pred             EEECCC----CeEEE------eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC--CC---c-c-------------
Q 009380          309 LMDAEK----EVFDL------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR--SR---K-S-------------  359 (536)
Q Consensus       309 vwd~~~----~~~~~------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~--~~---~-~-------------  359 (536)
                      ++-+.-    +....      +-.....|.|+....+| + ++.++.||.|+-+-..  .+   + +             
T Consensus       153 ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-R-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l  230 (1311)
T KOG1900|consen  153 ILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG-R-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSL  230 (1311)
T ss_pred             EEEEEeccccCcccccccceeeecCCceEEEEEeccCC-c-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHh
Confidence            665432    11111      11234578888866666 4 4555666655432221  11   1 0             


Q ss_pred             ---ceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          360 ---ATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       360 ---~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                         +..+. .+.++|..|...... +++.+-+..|+|.+||+..
T Consensus       231 vPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  231 VPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence               11122 467789999998754 7999999999999999987

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=85.79  E-value=36  Score=33.01  Aligned_cols=102  Identities=5%  Similarity=0.035  Sum_probs=57.6

Q ss_pred             CEEEEEECCCeEEEEECCC--CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc--------------
Q 009380          296 SKIFTSCYDGLIRLMDAEK--EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS--------------  359 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~--~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~--------------  359 (536)
                      .+|+.|+.+| |.+.++..  .....+. +...|.++...+...-+++.++....++.+++..-..              
T Consensus        14 ~~lL~GTe~G-ly~~~~~~~~~~~~kl~-~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~   91 (302)
T smart00036       14 KWLLVGTEEG-LYVLNISDQPGTLEKLI-GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRK   91 (302)
T ss_pred             cEEEEEeCCc-eEEEEcccCCCCeEEec-CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccc
Confidence            5899999888 55556654  3344443 3458999999988733344444555699999843221              


Q ss_pred             -ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          360 -ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       360 -~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                       ......|.......+........++++....+|.++....
T Consensus        92 ~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~  132 (302)
T smart00036       92 NVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN  132 (302)
T ss_pred             cceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
Confidence             0111234443333333322223445555567788765543

Unpublished observations.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=85.53  E-value=37  Score=32.93  Aligned_cols=235  Identities=8%  Similarity=-0.017  Sum_probs=108.5

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECCCCeE---------
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKEVF---------  317 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~~~---------  317 (536)
                      +++|+.|+.+|...+ ++....  .....  ..+...|+++...+.- +.|++-+ ....++++++..-..         
T Consensus        13 ~~~lL~GTe~Gly~~-~~~~~~--~~~~k--l~~~~~v~q~~v~~~~-~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~   86 (302)
T smart00036       13 GKWLLVGTEEGLYVL-NISDQP--GTLEK--LIGRRSVTQIWVLEEN-NVLLMISGKKPQLYSHPLSALVEKKEALGSAR   86 (302)
T ss_pred             CcEEEEEeCCceEEE-EcccCC--CCeEE--ecCcCceEEEEEEhhh-CEEEEEeCCcceEEEEEHHHhhhhhhccCCcc
Confidence            368999999885554 454311  11222  2346789999999887 6666555 334499999842110         


Q ss_pred             -------EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC--c--cceeE---e-ccCCCeEEEEEecCC-CC
Q 009380          318 -------DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR--K--SATEW---L-LHEARINTIDFNPRN-PN  381 (536)
Q Consensus       318 -------~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~--~--~~~~~---~-~h~~~i~~i~~~p~~-~~  381 (536)
                             .....+.....-++........++++....+|.++.....  +  ....+   . ....++..+..+++. ..
T Consensus        87 ~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  166 (302)
T smart00036       87 LVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERP  166 (302)
T ss_pred             ccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccce
Confidence                   1122333333333333222123444445557777654322  1  11110   0 111233333333321 23


Q ss_pred             EEEEEeCCCcEEEEeCCC--CCCCCCC-cceeeccc-CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEecc
Q 009380          382 IMATSSTDGTACIWDLRS--MATDKPE-PMKVLSHK-RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHN  455 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~--~~~~~~~-~~~~~~~~-~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~  455 (536)
                      .+..|+..+...++++..  ....... ........ .++.... -+++.+|+ + .|....+.|.......  ..+...
T Consensus       167 ~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e~Ll-c-~~~~~v~Vn~~G~~~~r~~~l~w~  243 (302)
T smart00036      167 GICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDEFLL-C-YDEFGVFVNLYGKRRSRNPILHWE  243 (302)
T ss_pred             EEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCeEEE-E-ECcEEEEEeCCCCccccceEEEcC
Confidence            566666542345555543  2111100 00011111 2333333 33444443 3 3444555555431211  122211


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      .   ..   ..+++.  ..||++-. +..|.|+++.+++.++.+.
T Consensus       244 ~---~p---~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~  279 (302)
T smart00036      244 F---MP---ESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA  279 (302)
T ss_pred             C---cc---cEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence            1   11   113333  35766665 4569999999998877775

Unpublished observations.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=85.22  E-value=44  Score=33.55  Aligned_cols=11  Identities=9%  Similarity=0.066  Sum_probs=7.9

Q ss_pred             cEEEEeCCCCC
Q 009380          391 TACIWDLRSMA  401 (536)
Q Consensus       391 ~i~iwdl~~~~  401 (536)
                      .+.+||..+..
T Consensus       190 ~v~~YD~~t~~  200 (376)
T PRK14131        190 EVLSYDPSTNQ  200 (376)
T ss_pred             eEEEEECCCCe
Confidence            47888987743

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=84.84  E-value=60  Score=34.83  Aligned_cols=213  Identities=13%  Similarity=0.147  Sum_probs=0.0

Q ss_pred             ecccccCccccccccCCceEEEEEEecCC-ccEEEEE-eCCCcEEEEECCCC---------CCCCCceEEeccCCCCEEE
Q 009380          219 IGSLTLKPENIARIMPGRITQMKFLPCSD-VRMVVAG-SKLGNITFWNLDSQ---------QDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       219 lw~~~~~~~~~~~~~~~~I~~v~~~p~~~-~~~l~tg-~~dg~v~iwd~~~~---------~~~~~~~~~~~~h~~~V~~  287 (536)
                      +|+....+..+       |.||......+ ..+.++| ...+.-++-.+...         ..+......+.- ...|..
T Consensus        63 iwsypi~pt~i-------V~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl-~~kvv~  134 (670)
T PF10395_consen   63 IWSYPISPTTI-------VECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL-DDKVVG  134 (670)
T ss_pred             eEeeccCcCce-------EEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc-ccceEE


Q ss_pred             EEEecCCCCEEEEEECCCeEEEEEC----------CCCeEEEeecCCCceeEEEecCCCCCEEEEEE---CCCeEEEEEC
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDA----------EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDV  354 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~----------~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~  354 (536)
                      |.|.+++ ..+++...+|.|.+||.          .+.....-..+..-|.....-.....++..+.   ..-..+++.+
T Consensus       135 Ik~~~~~-~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l  213 (670)
T PF10395_consen  135 IKFSSDG-KIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISL  213 (670)
T ss_pred             EEEecCC-CEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEe


Q ss_pred             -CCCccceeEe---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce-eecccCceeEEEEccCCCeE
Q 009380          355 -RSRKSATEWL---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK-VLSHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       355 -~~~~~~~~~~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~-~~~~~~~v~~l~~sp~g~~l  429 (536)
                       .....+..+.   .+........|+-..+.+..-  .++.|.+|++...+......+. +..... -.-+++.|-..-=
T Consensus       214 ~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~-~~~vSl~~~s~nR  290 (670)
T PF10395_consen  214 SNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKES-DDLVSLKPPSPNR  290 (670)
T ss_pred             ccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhcccc-ccceEeecCCCCe


Q ss_pred             EEEeCCCcEEEEeC
Q 009380          430 ATTSFDDTIGIWSG  443 (536)
Q Consensus       430 ~t~s~dg~I~iwd~  443 (536)
                      +.-+.++.|++.|+
T Consensus       291 vLLs~~nkIyLld~  304 (670)
T PF10395_consen  291 VLLSVNNKIYLLDL  304 (670)
T ss_pred             EEEEcCCEEEEEee

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=84.76  E-value=31  Score=37.23  Aligned_cols=67  Identities=10%  Similarity=0.037  Sum_probs=37.4

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV  354 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~  354 (536)
                      |-+.++.+.|.-++ .-++..-.|.+     ........+-.....|...+|+.+. ..++....+.+|.++|-
T Consensus        75 hf~~~~~~~f~~~~-gDii~~~~dp~-----p~e~~~eivG~v~nGIvaa~wS~DE-~~~cvvt~~r~il~~~k  141 (1243)
T COG5290          75 HFHVLTFEYFLIDE-GDIIHLVNDPT-----PAELEMEIVGKVSNGIVAASWSADE-KTWCVVTSTREILLFDK  141 (1243)
T ss_pred             hhhhhheeeEEecC-CcEEEEEcCCC-----cccchhhhhccccCceEEEeeccCC-ceEEEEEcCceEEEEec
Confidence            44556666666655 33333333332     0111112222345778888999887 66666666778877763

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.67  E-value=16  Score=41.62  Aligned_cols=35  Identities=17%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECC
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLD  266 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~  266 (536)
                      ..+.+.....++|+|  ...++|.|+..|.|.+|-..
T Consensus        31 ~~G~~~~~~~~afD~--~q~llai~t~tg~i~~yg~~   65 (993)
T KOG1983|consen   31 RHGFPSTPSALAFDP--TQGLLAIGTRTGAIKIYGQP   65 (993)
T ss_pred             ecCCCCCCcceeecc--ccceEEEEEecccEEEeccc
Confidence            355677788899999  88999999999999999765

>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed

Probab=84.37  E-value=0.82  Score=34.51  Aligned_cols=15  Identities=53%  Similarity=0.855  Sum_probs=14.1

Q ss_pred             CCHHHHHHHHhHHHH
Q 009380            6 LTEYERKRLENIKRN   20 (536)
Q Consensus         6 ~~~~e~~r~~~i~~n   20 (536)
                      |||+||+||+.|.|+
T Consensus         3 LSe~E~r~L~eiEr~   17 (82)
T PF11239_consen    3 LSEHEQRRLEEIERQ   17 (82)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            899999999999986

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.26  E-value=13  Score=37.89  Aligned_cols=88  Identities=11%  Similarity=0.089  Sum_probs=57.5

Q ss_pred             cCceeEEEEccCCCeEEEEeCCCcEEEEeCC---------CCCcceEEeccC------CCCceeeeeEEEEcCCC---CE
Q 009380          414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGV---------NFENTSMIHHNN------QTGRWISSFRAIWGWDD---SC  475 (536)
Q Consensus       414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~---------~~~~~~~~~~~~------~~~~~~~~~~~~~s~~g---~~  475 (536)
                      ...|..+..++.|..++..+.+|.+.++=.+         +++.....+...      .....++...+.|+|+.   ..
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            3467888999999999999999966554322         233222221110      11133555668899975   56


Q ss_pred             EEEEcCCCcEEEEcCCccccceeccC
Q 009380          476 VFIGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      |..-+.|+.|++||......++...+
T Consensus       183 L~iL~sdnviRiy~lS~~telylqpg  208 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTELYLQPG  208 (741)
T ss_pred             EEEEecCcEEEEEecCCcchhhccCC
Confidence            77788899999999987766654443

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=84.24  E-value=33  Score=34.20  Aligned_cols=125  Identities=16%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeec-----CCCceeEEEecCCCCCEEEEE-------ECCCeEEEEECCCCccceeE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSLSQQPNNVNTLYFG-------EGQGGLNIWDVRSRKSATEW  363 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~~l~~g-------~~dg~i~i~d~~~~~~~~~~  363 (536)
                      +.+..-+.-+.|-+|+..+++....+.     ......-+.|.+.. ++++..       ..++.|.+||.+...     
T Consensus       236 ~~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~-~~li~~~~fp~~~kdN~~i~~~d~Rd~n-----  309 (465)
T KOG2714|consen  236 TQLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGS-NLLIDSQKFPLRMKDNDLIVTEDFRDRN-----  309 (465)
T ss_pred             hhhhhccccccccccchhhhceeeeeeccCccccCChhhhccccCc-eeEEEEeeccccccCCceEEEeeccCCC-----
Confidence            344555667889999998874433322     23345556676654 444432       246789999998766     


Q ss_pred             eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC-CC-cceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380          364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK-PE-PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW  441 (536)
Q Consensus       364 ~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~-~~-~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw  441 (536)
                             ++..|.     .++.+...+.+++-|.-...... .. ...+..|..+.        + ++=.+...+.+++|
T Consensus       310 -------~~~~W~-----~i~~gt~~~~vrv~~~~~~~~~~~~~l~~~f~~~~~~L--------~-~idv~~~~~~~~~~  368 (465)
T KOG2714|consen  310 -------TSGNWI-----EIAYGTSSGEVRVIDQHPETVGVGPCLFQTFEVHGSPL--------G-LIDVCSDGGHVRVW  368 (465)
T ss_pred             -------ccceEE-----EecCCccccceEeeeccccccCCCCeEEEEEEecCCCc--------c-eeehhhhCCcceEE
Confidence                   123443     24445556677776654322111 11 11222344331        1 23334455679999


Q ss_pred             eCCCCC
Q 009380          442 SGVNFE  447 (536)
Q Consensus       442 d~~~~~  447 (536)
                      ......
T Consensus       369 ~~tr~r  374 (465)
T KOG2714|consen  369 NSTRFR  374 (465)
T ss_pred             eecccc
Confidence            876543

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=83.65  E-value=8.8  Score=41.36  Aligned_cols=155  Identities=13%  Similarity=0.111  Sum_probs=93.4

Q ss_pred             CCceEEEEEEec-------------------CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380          234 PGRITQMKFLPC-------------------SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC  294 (536)
Q Consensus       234 ~~~I~~v~~~p~-------------------~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  294 (536)
                      ..+++|+.+.|.                   .+...+..|+.++.|.|+.-............+......+.++.+++. 
T Consensus       514 ~~r~lcm~y~Ps~ee~~~sp~a~P~~~~~~as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~-  592 (925)
T KOG3522|consen  514 GGRNLCMSYLPSLEELTQSPTAVPETPDTQASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG-  592 (925)
T ss_pred             cccccchhhCcchhhccCCCCCCCCCcccccCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-
Confidence            567777777771                   123467888999999999876322111122223334456777777764 


Q ss_pred             CCEEEEEECCCeEEEE--------ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--
Q 009380          295 LSKIFTSCYDGLIRLM--------DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--  364 (536)
Q Consensus       295 ~~~l~s~s~dg~I~vw--------d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--  364 (536)
                        -+..|.-||++-.+        |.+  -.+.+.....+|.+..+..+    ++.++.+|.|.++...+......+.  
T Consensus       593 --Slgagl~dgt~a~y~rap~gSwd~e--p~~~~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~leah  664 (925)
T KOG3522|consen  593 --SLGAGLIDGTLAVYGRAPSGSWDGE--PNISIPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEAH  664 (925)
T ss_pred             --ccccCccCCccccccCCCCCCCCCC--CccccccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHHH
Confidence              36666666666544        433  11112234467888888754    5778889999999988765544443  


Q ss_pred             -ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          365 -LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       365 -~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                       .|...|+++.....+ -+++.++.| .+++++..+
T Consensus       665 qee~~~Vthm~~~~~g-VwvafasG~-~~rlfhtet  698 (925)
T KOG3522|consen  665 QEEAHSVTHMLYLDNG-VWVAFASGD-EERLFHTET  698 (925)
T ss_pred             HhhcceEEEEEeeCCc-eEEEEcCCC-EEEEecccc
Confidence             456678888888644 444444433 455555544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.44  E-value=40  Score=31.69  Aligned_cols=196  Identities=13%  Similarity=0.020  Sum_probs=119.3

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .-..|+-.|  ||..-+++...|.|.-.|..+    ++....-.+....-..|..-|++ ..-++-+.. -|.-.|-++.
T Consensus        63 ap~dvapap--dG~VWft~qg~gaiGhLdP~t----Gev~~ypLg~Ga~Phgiv~gpdg-~~Witd~~~-aI~R~dpkt~  134 (353)
T COG4257          63 APFDVAPAP--DGAVWFTAQGTGAIGHLDPAT----GEVETYPLGSGASPHGIVVGPDG-SAWITDTGL-AIGRLDPKTL  134 (353)
T ss_pred             CccccccCC--CCceEEecCccccceecCCCC----CceEEEecCCCCCCceEEECCCC-CeeEecCcc-eeEEecCccc
Confidence            345677777  998899988888888888877    34444334445556678888988 444433322 5666677665


Q ss_pred             eEEEee---c-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          316 VFDLVY---S-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       316 ~~~~~~---~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      ....+.   . .........|.+.+ ++.+++. .|.---.|..+ ..+..+. .....-+.||..|+|. +.++.-.+.
T Consensus       135 evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q-~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagn  210 (353)
T COG4257         135 EVTRFPLPLEHADANLETAVFDPWG-NLWFTGQ-IGAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGS-VWYASLAGN  210 (353)
T ss_pred             ceEEeecccccCCCcccceeeCCCc-cEEEeec-cccceecCccc-CceeeeccCCCCCCcceEECCCCc-EEEEecccc
Confidence            544332   2 24677888899988 6777665 33322223222 1233443 2334567899999885 444444566


Q ss_pred             cEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          391 TACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      .|-..|...+..   ..+... .....-..+--+|.|..-++....+.+.-||..+.
T Consensus       211 aiaridp~~~~a---ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~  264 (353)
T COG4257         211 AIARIDPFAGHA---EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             ceEEcccccCCc---ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence            777777766531   111111 22334455666788888888777788888886543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=83.09  E-value=15  Score=39.20  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      .-++++.-+|  .+.-++.+..||.|.+|+.....  ...+..   ...+-..+.|...|   |+++..|..+.-|.-+
T Consensus        15 e~~~aiqshp--~~~s~v~~~~d~si~lfn~~~r~--qski~~---~~~p~~nlv~tnhg---l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   15 EFTTAIQSHP--GGQSFVLAHQDGSIILFNFIPRR--QSKICE---EAKPKENLVFTNHG---LVTATSDRRALAWKED   83 (1636)
T ss_pred             ceeeeeeecC--CCceEEEEecCCcEEEEeecccc--hhhhhh---hcCCccceeeeccc---eEEEeccchhheeecc
Confidence            3477888889  99999999999999999987522  111111   22333445666554   7777778877777644

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.08  E-value=60  Score=33.43  Aligned_cols=75  Identities=12%  Similarity=0.159  Sum_probs=47.2

Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEE---------CCCCcccee---E------e--ccCCCeEEEEEecCC--CCEE
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWD---------VRSRKSATE---W------L--LHEARINTIDFNPRN--PNIM  383 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d---------~~~~~~~~~---~------~--~h~~~i~~i~~~p~~--~~~l  383 (536)
                      .|..+..++.| ..++..+.+|-+.++=         +..|+.+-.   +      .  ...-.+..++|||+.  ...|
T Consensus       105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            46677788888 6777777777554442         123332111   1      1  111235678999976  4566


Q ss_pred             EEEeCCCcEEEEeCCCCC
Q 009380          384 ATSSTDGTACIWDLRSMA  401 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~  401 (536)
                      ..-+.|.+|++||+....
T Consensus       184 ~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEecCcEEEEEecCCcc
Confidence            667779999999998754

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=82.75  E-value=47  Score=31.93  Aligned_cols=170  Identities=15%  Similarity=0.194  Sum_probs=88.2

Q ss_pred             eEEEEECCCCeEEEeec-------CCCceeEEEecCCCC----CEEEEEE-CCCeEEEEECCCCccceeEec--------
Q 009380          306 LIRLMDAEKEVFDLVYS-------SEYAVFSLSQQPNNV----NTLYFGE-GQGGLNIWDVRSRKSATEWLL--------  365 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~-------~~~~i~~l~~~~~~~----~~l~~g~-~dg~i~i~d~~~~~~~~~~~~--------  365 (536)
                      .|.+||+.+.+....+.       ..+.+..+.+.....    .+++... ..+.|.++|+.+++.-+.+..        
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            45667777765544432       345667777766332    2455444 346899999998764333221        


Q ss_pred             -----------cCCCeEEEEEec---CCCCEEEEEeCCCcEEEEeCCC-----CCCCCCC----cceeeccc-CceeEEE
Q 009380          366 -----------HEARINTIDFNP---RNPNIMATSSTDGTACIWDLRS-----MATDKPE----PMKVLSHK-RAVHSAY  421 (536)
Q Consensus       366 -----------h~~~i~~i~~~p---~~~~~l~s~s~dg~i~iwdl~~-----~~~~~~~----~~~~~~~~-~~v~~l~  421 (536)
                                 ....+..++.+|   ++ .+|.-....+. ++|.+.+     .......    .....+.. .....++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~  192 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA  192 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence                       123366677766   44 45555543332 3333322     1110001    11222332 4667889


Q ss_pred             EccCCCeEEEEeCCCcEEEEeCCCC---CcceEEeccCCCCceeeeeEEEEcC--CCCEEEEE
Q 009380          422 FSPSGSSLATTSFDDTIGIWSGVNF---ENTSMIHHNNQTGRWISSFRAIWGW--DDSCVFIG  479 (536)
Q Consensus       422 ~sp~g~~l~t~s~dg~I~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~--~g~~l~~g  479 (536)
                      ++++|.++++--..+.|..|+....   +....+......-.|...  +.+.+  +|.+.+..
T Consensus       193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~--~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG--LKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE--EEE-T--TS-EEEEE
T ss_pred             ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce--eeeccccCceEEEEE
Confidence            9999998888889999999998752   233344444433445554  33555  55444333

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=82.37  E-value=43  Score=34.38  Aligned_cols=60  Identities=8%  Similarity=0.098  Sum_probs=37.4

Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc-eee--cccCceeEEEEccCC
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM-KVL--SHKRAVHSAYFSPSG  426 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~--~~~~~v~~l~~sp~g  426 (536)
                      .-.....|+|.|++ .+|++--..|.|++++...........+ ...  ........|+++|+-
T Consensus        28 GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            34566889999987 5666654469999998655321100000 111  135778999999875

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=82.16  E-value=10  Score=33.21  Aligned_cols=30  Identities=30%  Similarity=0.408  Sum_probs=25.0

Q ss_pred             CceeEEEEccCC------CeEEEEeCCCcEEEEeCC
Q 009380          415 RAVHSAYFSPSG------SSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       415 ~~v~~l~~sp~g------~~l~t~s~dg~I~iwd~~  444 (536)
                      ..|.+++|||.|      .+|++.+.++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            488999999954      378888999999999754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG2006 consensus WD40 repeat protein [General function prediction only]

Probab=82.05  E-value=12  Score=41.24  Aligned_cols=66  Identities=9%  Similarity=0.195  Sum_probs=47.7

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceE---EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIY---LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~---~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      ...++++|...|.+.+++.....  .....   .-.+|+.++.-+.|.|++ ..++.+-..|...+|.....
T Consensus       159 e~~lla~G~~~g~v~~y~~~~~~--ssl~~s~~~~~~~ti~~~~~~~~p~~-~~~av~~~~g~ls~wS~~g~  227 (1023)
T KOG2006|consen  159 EFQLLAYGTPVGEVLLYSIDEAN--SSLVFSNRDDDTLTVPDNNSSWRPDQ-NGFAVTWEKGFLAFWSNQGN  227 (1023)
T ss_pred             hhhhheecccccceeehhhhhhc--cceeeecccCccccccccccCcCCcc-ceeeeeecccceEEeccccc
Confidence            78899999999999999987532  11111   112344477788899988 88888888888888886543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=81.43  E-value=73  Score=33.26  Aligned_cols=270  Identities=13%  Similarity=0.141  Sum_probs=127.4

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      ..+|..+.+.-  .| .+.+|+.|| +..||..+    ++.+..-.... ..|..+...-.  ..|..|+.+| |.+.+.
T Consensus       164 d~~V~aLv~D~--~g-~lWvgT~dG-L~~fd~~~----gkalql~s~~~dk~I~al~~d~q--g~LWVGTdqG-v~~~e~  232 (671)
T COG3292         164 DTPVVALVFDA--NG-RLWVGTPDG-LSYFDAGR----GKALQLASPPLDKAINALIADVQ--GRLWVGTDQG-VYLQEA  232 (671)
T ss_pred             Cccceeeeeec--cC-cEEEecCCc-ceEEcccc----ceEEEcCCCcchhhHHHHHHHhc--CcEEEEeccc-eEEEch
Confidence            45788888876  54 566777776 44555544    33333222222 45555554444  4678888777 677776


Q ss_pred             CCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc--CCCeEEEEEecCCCCEEEEEeC
Q 009380          313 EKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH--EARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       313 ~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h--~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      +........  -....|..+.-..++  .+..|+.+|-.+.--.+.+-.......|  -..|+++....+|.  +-+++.
T Consensus       233 ~G~~~sn~~~~lp~~~I~ll~qD~qG--~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs--LWv~t~  308 (671)
T COG3292         233 EGWRASNWGPMLPSGNILLLVQDAQG--ELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS--LWVGTY  308 (671)
T ss_pred             hhccccccCCCCcchheeeeecccCC--CEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC--Eeeecc
Confidence            663322211  123455555555554  6777888875544333322222222222  24566666666663  666666


Q ss_pred             CCcEEEEeCCCCCCCCCCcce-eecc-cCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          389 DGTACIWDLRSMATDKPEPMK-VLSH-KRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~-~~~~-~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                      +|.+++-+-.-      .... +... ...+..++..|  .+..+--...-|.+.+-+-.++........  ..+..++.
T Consensus       309 ~giv~~~~a~w------~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q--~Rg~nit~  380 (671)
T COG3292         309 GGIVRYLTADW------KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQ--LRGMNITT  380 (671)
T ss_pred             CceEEEecchh------hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeee--ccccccch
Confidence            66555433211      0101 1111 01111111111  111111111112222222233333332211  11222333


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCc-cccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~-~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                        .++.. +..+..|+++.-+..|+..+ +-.+....+...+.+ +.+.-.|.+ + |..|+.+|.++.
T Consensus       381 --~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V-~aived~dn-s-LWIGTs~Glvk~  443 (671)
T COG3292         381 --TLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEV-SAIVEDPDN-S-LWIGTSGGLVKR  443 (671)
T ss_pred             --hhhcc-CCcEEEEecccchhhhccCCcccccccccCCcccce-eeeeecCCC-C-EEEeccCCeEec
Confidence              22344 44567777776677777766 434444444444444 445566633 3 888888887653

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.95  E-value=16  Score=41.58  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=90.6

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeecCCCceeEEEe--------cCCCCCEEEEEECCCeEEE
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQ--------QPNNVNTLYFGEGQGGLNI  351 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~~~~~i~~l~~--------~~~~~~~l~~g~~dg~i~i  351 (536)
                      |...-+.+-+.|.=+..-+  +-|+.+.+|+.++ +.+...-+....|..+..        .|.=.++|++++.- .|.+
T Consensus        77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~-ei~i  153 (1311)
T KOG1900|consen   77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPV-EIVI  153 (1311)
T ss_pred             CcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccc-eEEE
Confidence            4443444555554313333  3488899999998 444444444555555543        22222345555543 5666


Q ss_pred             EECCC----Ccc-----ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC--CC------C------------
Q 009380          352 WDVRS----RKS-----ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS--MA------T------------  402 (536)
Q Consensus       352 ~d~~~----~~~-----~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~--~~------~------------  402 (536)
                      +-+.-    +..     ..++....-.|+||....+| ++|.+|- ||  .+|.+.-  ..      +            
T Consensus       154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~  229 (1311)
T KOG1900|consen  154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSS  229 (1311)
T ss_pred             EEEEeccccCcccccccceeeecCCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHH
Confidence            54332    111     11222335668889866655 6776664 66  4444321  10      0            


Q ss_pred             CCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          403 DKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       403 ~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      .-+....+. .+..+|..+.....-..+.+-+..++|.+||+..
T Consensus       230 lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  230 LVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             hhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            001222333 5677999999998888999999999999999875

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.33  E-value=68  Score=32.78  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=25.1

Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      ..|.++...+..+.+++.+.+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            3488999999889999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=80.32  E-value=1.1e+02  Score=34.60  Aligned_cols=170  Identities=13%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             EEEEECCCCccceeEeccC----CCeEEEEEecCCCC-EEEEEeC-----------CCcEEEEeCCCCCCCCCCcceee-
Q 009380          349 LNIWDVRSRKSATEWLLHE----ARINTIDFNPRNPN-IMATSST-----------DGTACIWDLRSMATDKPEPMKVL-  411 (536)
Q Consensus       349 i~i~d~~~~~~~~~~~~h~----~~i~~i~~~p~~~~-~l~s~s~-----------dg~i~iwdl~~~~~~~~~~~~~~-  411 (536)
                      |+++|..+++.+..+....    -.+..+.|+..+.. ++++|..           +|.++.|++-...    ..+.+. 
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g----~~lellh  930 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG----DKLELLH  930 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecC----ceeeeee
Confidence            6777777666655554222    23566666654433 3343332           3456666654432    122222 


Q ss_pred             --cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE--
Q 009380          412 --SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV--  487 (536)
Q Consensus       412 --~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v--  487 (536)
                        .-.+.|  .+..|...++++ +....+++||+-..+.+....... ....++.+  .  ..+..+++|...-.|.+  
T Consensus       931 ~T~~~~~v--~Ai~~f~~~~La-gvG~~l~~YdlG~K~lLRk~e~k~-~p~~Is~i--q--t~~~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen  931 KTEIPGPV--GAICPFQGRVLA-GVGRFLRLYDLGKKKLLRKCELKF-IPNRISSI--Q--TYGARIVVGDIQESVHFVR 1002 (1205)
T ss_pred             ccCCCccc--eEEeccCCEEEE-ecccEEEEeeCChHHHHhhhhhcc-CceEEEEE--e--ecceEEEEeeccceEEEEE
Confidence              122233  456675555554 456789999997766655543222 12223332  2  24557778766655554  


Q ss_pred             EcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      |+.... .+..+.........+...+-  |.+.+|.+..=|.+.+-
T Consensus      1003 y~~~~n-~l~~fadD~~pR~Vt~~~~l--D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1003 YRREDN-QLIVFADDPVPRHVTALELL--DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred             EecCCC-eEEEEeCCCccceeeEEEEe--cCCceeeccccCcEEEE
Confidence            443333 44555444333332333333  44678888777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	536
4a08_B	382	Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup		2e-13
3ei1_B	383	Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho		2e-13
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		3e-11
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		5e-11
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		5e-11
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-07
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		3e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		3e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-06
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-06
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-06
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-06
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-06
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-06
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		6e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-06
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-06
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-06
2h9l_A	329	Wdr5delta23 Length = 329		5e-06
2h9l_A	329	Wdr5delta23 Length = 329		6e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-06
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-06
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		5e-06
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-06
2gnq_A	336	Structure Of Wdr5 Length = 336		6e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-06
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		6e-06
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-05
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		6e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-04
4i79_A	399	Crystal Structure Of Human Nup43 Length = 399		7e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		6e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		6e-04

>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 382

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 25/246 (10%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP---ISGIVTQQ 292
           R+T +++ P     + V GSK G+I  W+ D Q         F   +GP   I+G+   Q
Sbjct: 74  RVTSLEWHPTHPTTVAV-GSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQ 127
Query: 293 YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-------SLSQQPNNVNTLYFGEG 345
           +  +++F S   G   L D    V  +   ++   +       S+S+Q      L  G+ 
Sbjct: 128 FNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ-----MLATGDS 182
Query: 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
            G L +  +   +   E  LH+A++   +FNPR   +MATSS D T  +WDLR++  DK 
Sbjct: 183 TGRLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-DKN 240
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWIS 463
             +  + H++ V++AYF+P+ S+ L TT   + I ++S  ++     +I H ++  + ++
Sbjct: 241 SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 300
Query: 464 SFRAIW 469
             +A W
Sbjct: 301 PIKATW 306

>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 383

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 25/246 (10%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP---ISGIVTQQ 292
           R+T +++ P     + V GSK G+I  W+ D Q         F   +GP   I+G+   Q
Sbjct: 75  RVTSLEWHPTHPTTVAV-GSKGGDIILWDYDVQNKTS-----FIQGMGPGDAITGMKFNQ 128
Query: 293 YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-------SLSQQPNNVNTLYFGEG 345
           +  +++F S   G   L D    V  +   ++   +       S+S+Q      L  G+ 
Sbjct: 129 FNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQ-----MLATGDS 183
Query: 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
            G L +  +   +   E  LH+A++   +FNPR   +MATSS D T  +WDLR++  DK 
Sbjct: 184 TGRLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-DKN 241
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWIS 463
             +  + H++ V++AYF+P+ S+ L TT   + I ++S  ++     +I H ++  + ++
Sbjct: 242 SYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301
Query: 464 SFRAIW 469
             +A W
Sbjct: 302 PIKATW 307

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 44/327 (13%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295
           R T + + P +    V  GSK G+I  WN    +D+   I       G I+G+       
Sbjct: 122 RATSLAWHP-THPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIGAG-GSITGLKFNPLNT 178
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEGQG--- 347
           ++ + S  +G  RL D +  +  +  SS+     +    +S     V T   G+  G   
Sbjct: 179 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT---GDNVGNVI 235
Query: 348 -----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402
                G  +W++R         +H+ ++  +  NP     +AT+S D T  IWDLR +  
Sbjct: 236 LLNMDGKELWNLR---------MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV-R 285
Query: 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRW 461
            K   +  L H+  V++A FSP G+ L TT     I ++S   ++    +I H ++  + 
Sbjct: 286 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 345
Query: 462 ISSFRAIWGWDDSCVFIGNMT------------RTVEVISPAQRRSVATLQSPYISAIPC 509
           ++  +A W    + + +G               RT++V      + +  L  P  S I  
Sbjct: 346 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 405
Query: 510 RFHAHPHQVGTLAGATGGGQVYVWTSD 536
               +P  +G    +  G  + +W+ +
Sbjct: 406 LNEFNP--MGDTLASAMGYHILIWSQE 430

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 44/325 (13%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295
           R T + + P +    V  GSK G+I  WN    +D+   I       G I+G+       
Sbjct: 121 RATSLAWHP-THPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIGAG-GSITGLKFNPLNT 177
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEGQG--- 347
           ++ + S  +G  RL D +  +  +  SS+     +    +S     V T   G+  G   
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT---GDNVGNVI 234
Query: 348 -----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402
                G  +W++R         +H+ ++  +  NP     +AT+S D T  IWDLR +  
Sbjct: 235 LLNMDGKELWNLR---------MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV-R 284
Query: 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRW 461
            K   +  L H+  V++A FSP G+ L TT     I ++S   ++    +I H ++  + 
Sbjct: 285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344
Query: 462 ISSFRAIWGWDDSCVFIGNMT------------RTVEVISPAQRRSVATLQSPYISAIPC 509
           ++  +A W    + + +G               RT++V      + +  L  P  S I  
Sbjct: 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404
Query: 510 RFHAHPHQVGTLAGATGGGQVYVWT 534
               +P  +G    +  G  + +W+
Sbjct: 405 LNEFNP--MGDTLASAMGYHILIWS 427

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 133/325 (40%), Gaps = 44/325 (13%)
Query: 236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL 295
           R T + + P +    V  GSK G+I  WN    +D+   I       G I+G+       
Sbjct: 121 RATSLAWHP-THPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIGAG-GSITGLKFNPLNT 177
Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEGQG--- 347
           ++ + S  +G  RL D +  +  +  SS+     +    +S     V T   G+  G   
Sbjct: 178 NQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVT---GDNVGNVI 234
Query: 348 -----GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT 402
                G  +W++R         +H+ ++  +  NP     +AT+S D T  IWDLR +  
Sbjct: 235 LLNMDGKELWNLR---------MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV-R 284
Query: 403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQTGRW 461
            K   +  L H+  V++A FSP G+ L TT     I ++S   ++    +I H ++  + 
Sbjct: 285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH 344
Query: 462 ISSFRAIWGWDDSCVFIGNMT------------RTVEVISPAQRRSVATLQSPYISAIPC 509
           ++  +A W    + + +G               RT++V      + +  L  P  S I  
Sbjct: 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISS 404
Query: 510 RFHAHPHQVGTLAGATGGGQVYVWT 534
               +P  +G    +  G  + +W+
Sbjct: 405 LNEFNP--MGDTLASAMGYHILIWS 427

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSRKSATEWLL---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           L IWD RS  ++    L   H A +N + FNP +  I+AT S D T  +WDLR++   K 
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 310
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
           +     SHK  +   ++SP   + LA++  D  + +W
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 278 FRTHLGPISGIVTQQYCLSK----IFTSCYDGLIRLMDAE-KEVFDLVYSSEYAVFSLSQ 332
             T   P S +  +  C S     + T   D LIR+ D E +++  ++   E  ++SL  
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDY 173
Query: 333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA 392
            P+  + L  G G   + IWD+R+ + +   L  E  + T+  +P +   +A  S D   
Sbjct: 174 FPSG-DKLVSGSGDRTVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 393 CIWDLRS---MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT 449
            +WD  +   +     E      HK +V+S  F+  G S+ + S D ++ +W+  N  N 
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 450 S 450
           S
Sbjct: 292 S 292

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSRKSATEWLL---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           L IWD RS  ++    L   H A +N + FNP +  I+AT S D T  +WDLR++   K 
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 310
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
           +     SHK  +   ++SP   + LA++  D  + +W
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           L IWD RS    K +     H A +N + FNP +  I+AT S D T  +WDLR++   K 
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 308
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
           +     SHK  +    +SP   + LA++  D  + +W
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           L IWD R+    K +     H A +N + FNP +  I+AT S D T  +WDLR++   K 
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 316
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
           +     SHK  +    +SP   + LA++  D  + +W
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           L IWD R+    K +     H A +N + FNP +  I+AT S D T  +WDLR++   K 
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 314
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
           +     SHK  +    +SP   + LA++  D  + +W
Sbjct: 315 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 349 LNIWDVRSR---KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
           L IWD R+    K +     H A +N + FNP +  I+AT S D T  +WDLR++   K 
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL---KL 312
Query: 406 EPMKVLSHKRAVHSAYFSPSGSS-LATTSFDDTIGIW 441
           +     SHK  +    +SP   + LA++  D  + +W
Sbjct: 313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 43  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
              Q
Sbjct: 276 QKLQ 279

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 43  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
              Q
Sbjct: 276 QKLQ 279

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 46  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIW 182

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 116 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 173
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 224
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 278
Query: 489 SPAQ 492
              Q
Sbjct: 279 QKLQ 282

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357
           + +S  D LI++  A    F+   S      S     ++ N L        L IWDV S 
Sbjct: 60  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV 417
           K       H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPV 174
Query: 418 HSAYFSPSGSSLATTSFDDTIGIW 441
            + +F+  GS + ++S+D    IW
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIW 198

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 132 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 189
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 240
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 294
Query: 489 SPAQ 492
              Q
Sbjct: 295 QKLQ 298

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 36  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 95
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 96  LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 150
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIW 172

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 106 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 163
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 164 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 214
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 268
Query: 489 SPAQ 492
              Q
Sbjct: 269 QKLQ 272

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 39  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 98
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 99  LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 153
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIW 175

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 109 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 166
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 167 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 217
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 271
Query: 489 SPAQ 492
              Q
Sbjct: 272 QKLQ 275

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 46  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIW 182

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 116 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 173
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 224
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 278
Query: 489 SPAQ 492
              Q
Sbjct: 279 QKLQ 282

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 40  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 154
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIW 176

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 110 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 167
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 218
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 272
Query: 489 SPAQ 492
              Q
Sbjct: 273 QKLQ 276

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 57  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 116
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 117 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 171
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIW 193

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 127 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 184
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 185 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 235
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 289
Query: 489 SPAQ 492
              Q
Sbjct: 290 QKLQ 293

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 41  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 100
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 101 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 155
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 156 VHFNRDGSLIVSSSYDGLCRIW 177

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 111 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 168
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 169 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 219
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 273
Query: 489 SPAQ 492
              Q
Sbjct: 274 QKLQ 277

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 46  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 105
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIW 182

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 116 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 173
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 174 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 224
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 278
Query: 489 SPAQ 492
              Q
Sbjct: 279 QKLQ 282

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 45  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 104
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 105 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 159
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 160 VHFNRDGSLIVSSSYDGLCRIW 181

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 115 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 172
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 173 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 223
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 277
Query: 489 SPAQ 492
              Q
Sbjct: 278 QKLQ 281

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 304 DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW 363
           D LI++  A    F+   S      S     ++ N L        L IWDV S K     
Sbjct: 47  DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS 423
             H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V + +F+
Sbjct: 107 KGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSAVHFN 161
Query: 424 PSGSSLATTSFDDTIGIW 441
             GS + ++S+D    IW
Sbjct: 162 RDGSLIVSSSYDGLCRIW 179

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
              Q
Sbjct: 276 QKLQ 279

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357
           + +S  D LI++  A    F+   S      S     ++ N L        L IWDV S 
Sbjct: 62  LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAV 417
           K       H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPV 176
Query: 418 HSAYFSPSGSSLATTSFDDTIGIW 441
            + +F+  GS + ++S+D    IW
Sbjct: 177 SAVHFNRDGSLIVSSSYDGLCRIW 200

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 134 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 191
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 192 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 242
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 296
Query: 489 SPAQ 492
              Q
Sbjct: 297 QKLQ 300

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 40  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 99
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 100 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 154
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++ K       H   ++ + FN R+ +++ +S
Sbjct: 110 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN-RDGSLIVSS 167
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 218
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNLVYIWNL-QTKEIV 272
Query: 489 SPAQ 492
              Q
Sbjct: 273 QKLQ 276

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 43  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++         H   ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+T+ +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNTLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNMVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
              Q
Sbjct: 276 QKLQ 279

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 300 TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS 359
           +S  D LI++  A    F+   S      S     ++ N L        L IWDV S K 
Sbjct: 43  SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 102
Query: 360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHS 419
                 H   +   +FNP++ N++ + S D +  IWD+++    K  P    +H   V +
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSA 157
Query: 420 AYFSPSGSSLATTSFDDTIGIW 441
            +F+  GS + ++S+D    IW
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 35/184 (19%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           VF  +  P + N +  G     + IWDV++         H   ++ + FN R+ +++ +S
Sbjct: 113 VFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN-RDGSLIVSS 170
Query: 387 STDGTACIWD------LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI 440
           S DG   IWD      L+++  D   P+  +          FSP+G  +   + D+ + +
Sbjct: 171 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK---------FSPNGKYILAATLDNDLKL 221
Query: 441 W--SGVNFENTSMIHHNNQT----------GRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           W  S      T   H N +           G+WI S     G +D+ V+I N+ +T E++
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-----GSEDNMVYIWNL-QTKEIV 275
Query: 489 SPAQ 492
              Q
Sbjct: 276 QKLQ 279

>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 44/256 (17%)
Query: 235 GRITQMKFLPCSDVRMVVAGSKLGNITFW-------NLDSQQDEDNGIYLFRTHLGPISG 287
           G +  ++F    D   +VA S  G +T +        L   Q      Y    H GP S 
Sbjct: 94  GDVMDLQFF---DQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHY----HTGPGSP 146
Query: 288 IVTQQYCLS------KIFTSCYDGLIRLMDAEKE----VFDLVYSSEYAVFSLSQQPN-- 335
             +   C        +I T   DG I L  A+ +      D   SS     +  + P   
Sbjct: 147 SYSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEIL 206
Query: 336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLL----HEARINTIDFNPRNPNIMATSSTDGT 391
            VN++      G L IWD R + +    +L        ++ +D +P   +++AT   DG 
Sbjct: 207 TVNSI------GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGM 260
Query: 392 ACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNF--E 447
             IWD+R        P+ +L +H+  +   +F PS    L T S D ++  W       E
Sbjct: 261 LSIWDVRQGTM----PVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPE 316
Query: 448 NTSMIHHNNQTGRWIS 463
            +S+ H   ++  ++S
Sbjct: 317 KSSLFHQGGRSSTFLS 332

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           V SLS  P+       G       +WDVR       +  HE+ IN I F P N N  AT 
Sbjct: 198 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 255
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
           S D T  ++DLR+      + +   SH      + S  FS SG  L     D    +W  
Sbjct: 256 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 310
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
           +  +   ++  H+N+              TG W  SF  IW
Sbjct: 311 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 350

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           V SLS  P+       G       +WDVR       +  HE+ IN I F P N N  AT 
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
           S D T  ++DLR+      + +   SH      + S  FS SG  L     D    +W  
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
           +  +   ++  H+N+              TG W  SF  IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           V SLS  P+       G       +WDVR       +  HE+ IN I F P N N  AT 
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
           S D T  ++DLR+      + +   SH      + S  FS SG  L     D    +W  
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
           +  +   ++  H+N+              TG W  SF  IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           V SLS  P+       G       +WDVR       +  HE+ IN I F P N N  AT 
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
           S D T  ++DLR+      + +   SH      + S  FS SG  L     D    +W  
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
           +  +   ++  H+N+              TG W  SF  IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 26/161 (16%)
Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
           V SLS  P+       G       +WDVR       +  HE+ IN I F P N N  AT 
Sbjct: 187 VMSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATG 244
Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATTSFDDTIGIWSG 443
           S D T  ++DLR+      + +   SH      + S  FS SG  L     D    +W  
Sbjct: 245 SDDATCRLFDLRA-----DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Query: 444 VNFENTSMIH-HNNQ--------------TGRWISSFRAIW 469
           +  +   ++  H+N+              TG W  SF  IW
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-DSFLKIW 339

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 91/222 (40%), Gaps = 16/222 (7%)
Query: 221 SLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT 280
           +LT +  +  ++    + +  F P  + + V  G      + +NL SQ D D  + + R 
Sbjct: 95  ALTSQKTHAIKLHCPWVMECAFAP--NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRV 152
Query: 281 HLGPISGIVTQQYC---LSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA------VFSLS 331
             G      + QY     +++ T   D    L D        ++ SE+       V SLS
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 332 QQPNNVNTLYFGEGQGGLNIWDVR-SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390
               N N    G     + +WD+R + ++   +  HE  IN++ F P +     T S DG
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDG 271
Query: 391 TACIWDLRS---MATDKPEPMKVLSHKRAVHSAYFSPSGSSL 429
           T  ++D+R+   +     EP +  +    V S  FS SG  L
Sbjct: 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 24/233 (10%)
Query: 219 IGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF 278
           +G   +K     +    ++  M +  C D R +V+ S+ G +  W+     ++++ + + 
Sbjct: 49  LGQFVMKTRRTLKGHGNKVLCMDW--CKDKRRIVSSSQDGKVIVWD-SFTTNKEHAVTM- 104
Query: 279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVN 338
                P + ++   Y  S    +C  GL          FD   +      S++   N ++
Sbjct: 105 -----PCTWVMACAYAPSGCAIAC-GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS 158
Query: 339 TLYF---------GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP-RNPNIMATSST 388
              F           G G   +WDV S +    +  H A +  +D  P    N   +   
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
           D  A +WD+RS    +       +H+  V+S  + PSG + A+ S D T  ++
Sbjct: 219 DKKAMVWDMRSGQCVQA----FETHESDVNSVRYYPSGDAFASGSDDATCRLY 267

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 297 KIFTSCYDGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDV 354
           +I T+  DG   L D E  ++    +     V  L   P+   NT   G       +WD+
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 355 RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414
           RS +    +  HE+ +N++ + P + +  A+ S D T  ++DLR+        + + S +
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRA-----DREVAIYSKE 281
Query: 415 RAVHSAY---FSPSGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQ 457
             +  A    FS SG  L     D TI +W  +     S++  H N+
Sbjct: 282 SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR 328

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 28/250 (11%)
Query: 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT---- 280
           K  ++ RI  G I  +   P     M+  GS  G I  ++L++   +    Y  +     
Sbjct: 34  KDRDVERIHGGGINTLDIEPVEGRYMLSGGSD-GVIVLYDLENSSRQ--SYYTCKAVCSI 90
Query: 281 -------HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ 333
                  H   +  +    +      +S +D  +++ D        V++ E  V+S    
Sbjct: 91  GRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS 150
Query: 334 PNNVNTLYFGEGQGG--LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT 391
           P +        G  G  + + D++S   +     H   I  + ++PR   I+AT+S D  
Sbjct: 151 PVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 392 ACIWDLRS-----MATDKPEPMKV-------LSHKRAVHSAYFSPSGSSLATTSFDDTIG 439
             +WD+R      +  D+    K         +H   V+   F+  G  L T   D+ + 
Sbjct: 211 VKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270
Query: 440 IWSGVNFENT 449
           +W+  N ENT
Sbjct: 271 LWNSSNGENT 280

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDF-NPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
           + IWD  + K    +  H  ++N   F N  N  ++AT S D    +WDL      K   
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECR 743
Query: 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
             +  H  +V+   FSP    LA+ S D T+ +W
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 349 LNIWDVRSRKSATEWLLHEARINTIDF-NPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
           + IWD  + K    +  H  ++N   F N  N  ++AT S D    +WDL      K   
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ----KECR 736
Query: 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
             +  H  +V+   FSP    LA+ S D T+ +W
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 14/185 (7%)
Query: 252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLM 310
           V+GSK   I  W+L  Q      +  +R H   ++ +    +    +F SC  D  I L 
Sbjct: 143 VSGSKDICIKVWDLAQQV----VLSSYRAHAAQVTCVAASPH-KDSVFLSCSEDNRILLW 197
Query: 311 D--AEKEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE 367
           D    K    +  S+  Y   SL+  P       FG+  G +++ D +S        +H 
Sbjct: 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHS 257
Query: 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS 427
             +  + F+P +   +A+ S D +  + D     +   E  +  +H+  V  A +SP   
Sbjct: 258 QCVTGLVFSPHSVPFLASLSEDCSLAVLD-----SSLSELFRSQAHRDFVRDATWSPLNH 312
Query: 428 SLATT 432
           SL TT
Sbjct: 313 SLLTT 317

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 364 LLHEAR-INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS----HKRAVH 418
           L  +AR +N++DF P  P  + + S D T  I++          P K  S    H + VH
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE--------GPPFKFKSTFGEHTKFVH 194
Query: 419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN--QTGRWISSFRAIWGWDDSCV 476
           S  ++P GS  A+T  D TI +++GV+   T +   ++        S F   W  D + +
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 254
Query: 477 FIGNMTRTVEV 487
              +  +T+++
Sbjct: 255 ASASADKTIKI 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	536
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.79
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.72
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.71
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.6
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.52
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.47
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.47
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.41
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.38
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.35
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.34
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.31
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.27
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.27
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.26
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.25
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.21
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.2
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.19
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.17
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.15
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.11
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.1
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.99
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.97
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.89
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.85
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.84
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.82
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.8
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.79
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.78
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.76
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.75
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.73
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.71
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.71
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.68
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.68
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.67
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.64
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.59
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.57
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.56
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.56
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.55
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.54
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.54
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.52
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.49
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.49
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.48
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.45
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.41
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.35
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.34
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.33
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.32
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.31
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.3
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.26
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.23
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.21
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.21
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.19
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.15
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.97
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.95
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.94
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.88
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.86
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.86
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.81
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.65
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.54
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.43
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.38
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.36
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.35
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.34
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.27
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.18
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.17
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.14
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.02
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.99
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.95
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.91
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.89
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.88
3ott_A	758	Two-component system sensor histidine kinase; beta	96.85
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.83
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.77
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.77
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.76
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.71
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.68
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.54
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.46
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.44
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.37
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.36
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.19
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.08
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.08
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.97
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.79
3ott_A	758	Two-component system sensor histidine kinase; beta	95.69
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.48
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.31
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.25
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.99
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	94.73
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.42
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	94.24
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.23
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.2
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	93.24
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.36
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.91
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.89
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	85.21
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	82.08

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-43  Score=377.16  Aligned_cols=345  Identities=14%  Similarity=0.127  Sum_probs=265.0

Q ss_pred             cccceecccccceeeeecCCCCcccccc-ccccccccccc---------------------------------c----cc
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDL-IKGVVKTEKIE---------------------------------V----GS  215 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~~---------------------------------~----dg  215 (536)
                      .....+.+|.+.|.++.|+|+|++++.. .++.+++|...                                 .    .+
T Consensus        50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG  129 (611)
T ss_dssp             SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred             ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence            3456789999999999999999999854 12223333210                                 0    02


Q ss_pred             eEEecccccCccccccccCCceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380          216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC  294 (536)
Q Consensus       216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  294 (536)
                      .|.+|+. ......+.+|.+.|++++|+|  ++. .|++|+.|++|++||...    ......+.+|...|.+++|+|++
T Consensus       130 ~v~~wd~-~~~~~~l~gh~~~v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~----~~~~~~l~~H~~~V~~v~fspdg  202 (611)
T 1nr0_A          130 HVFLFDT-GTSNGNLTGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPP----FKFKSTFGEHTKFVHSVRYNPDG  202 (611)
T ss_dssp             EEEETTT-CCBCBCCCCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTT----BEEEEEECCCSSCEEEEEECTTS
T ss_pred             EEEEeeC-CCCcceecCCCCCceEEEECC--CCCeEEEEEeCCCeEEEEECCC----CeEeeeeccccCceEEEEECCCC
Confidence            3444442 122223456778888888888  765 699999999999999876    67788899999999999999998


Q ss_pred             CCEEEEEECCCeEEEEECCCCeEEEee--------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce-----
Q 009380          295 LSKIFTSCYDGLIRLMDAEKEVFDLVY--------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT-----  361 (536)
Q Consensus       295 ~~~l~s~s~dg~I~vwd~~~~~~~~~~--------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-----  361 (536)
                       .+|++++.|++|++||+.++.....+        +|...|.+++|+|++ .+|++++.|++|++||+++++.+.     
T Consensus       203 -~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~  280 (611)
T 1nr0_A          203 -SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVG  280 (611)
T ss_dssp             -SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             -CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence             99999999999999999988766554        688999999999998 899999999999999998876543     


Q ss_pred             --------------------------------------eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380          362 --------------------------------------EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD  403 (536)
Q Consensus       362 --------------------------------------~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~  403 (536)
                                                            .+.+|...|.+++|+|++ .+|++++.|++|++||+.++...
T Consensus       281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcee
Confidence                                                  234789999999999987 79999999999999999864310


Q ss_pred             CCC---------------------------------------------------c-------------------------
Q 009380          404 KPE---------------------------------------------------P-------------------------  407 (536)
Q Consensus       404 ~~~---------------------------------------------------~-------------------------  407 (536)
                      ...                                                   +                         
T Consensus       360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~  439 (611)
T 1nr0_A          360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH  439 (611)
T ss_dssp             ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred             eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence            000                                                   0                         


Q ss_pred             --ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          408 --MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       408 --~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                        .....|...+.+++|+|+|++|++++.|++|++||+.+....  ....|.    ..+  ..++|+|+|++|++++.|+
T Consensus       440 ~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~----~~v--~~v~fspdg~~las~s~d~  513 (611)
T 1nr0_A          440 GKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP----AEI--TSVAFSNNGAFLVATDQSR  513 (611)
T ss_dssp             TEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS----SCE--EEEEECTTSSEEEEEETTS
T ss_pred             CceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCC----Cce--EEEEECCCCCEEEEEcCCC
Confidence              000123456789999999999999999999999999765432  222222    223  3478999999999999999


Q ss_pred             cEEEEcCCc-ccccee-ccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          484 TVEVISPAQ-RRSVAT-LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       484 ~I~v~d~~~-~~~~~~-l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .|++|++.+ ++.+.. +...|...+ ..++|+| ++.+||+|+.||.|+||+++
T Consensus       514 ~v~~w~~~~~~~~~~~~~~~~H~~~V-~~v~fsp-dg~~lasgs~D~~v~lW~~~  566 (611)
T 1nr0_A          514 KVIPYSVANNFELAHTNSWTFHTAKV-ACVSWSP-DNVRLATGSLDNSVIVWNMN  566 (611)
T ss_dssp             CEEEEEGGGTTEESCCCCCCCCSSCE-EEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEcCCCCceeeeeeeeecccce-eEEEECC-CCCEEEEEECCCcEEEEECC
Confidence            999999987 555443 233244444 4689999 67999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-43  Score=358.63  Aligned_cols=290  Identities=16%  Similarity=0.244  Sum_probs=256.2

Q ss_pred             ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ....+.+|.+.|++++|+|  ++.+|++|+.||+|+|||+.+    +.....+.+|...|.+++|+|++ .+|++|+.|+
T Consensus       100 ~~~~l~gh~~~V~~~~~~p--~~~~l~s~s~Dg~i~vwd~~~----~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~  172 (410)
T 1vyh_C          100 EKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSG-KLLASCSADM  172 (410)
T ss_dssp             CSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTT----CCCCEEECCCSSCEEEEEECTTS-SEEEEEETTS
T ss_pred             ceEeecccCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC----CcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCC
Confidence            3455688999999999999  999999999999999999998    67788999999999999999998 9999999999


Q ss_pred             eEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          306 LIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       306 ~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      +|++||+.++.... +.+|...|.+++|+|++ ++|++|+.|++|++||++++.++..+.+|...|.++.|+|++ .+|+
T Consensus       173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~  250 (410)
T 1vyh_C          173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIA  250 (410)
T ss_dssp             CCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred             eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEE
Confidence            99999999876654 45788999999999998 899999999999999999999999999999999999999987 7999


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC--------------------CCeEEEEeCCCcEEEEeCC
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS--------------------GSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~--------------------g~~l~t~s~dg~I~iwd~~  444 (536)
                      +|+.|+.|++||++++.    ....+..|...|.+++|+|+                    |.+|++|+.|+.|++||++
T Consensus       251 s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~  326 (410)
T 1vyh_C          251 SCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS  326 (410)
T ss_dssp             EEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred             EEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            99999999999998853    44456689999999999996                    6789999999999999999


Q ss_pred             CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE
Q 009380          445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg  524 (536)
                      ++..+..+...   ..++..  +.|+|++.+|++|+.|+.|++||+.+++++..+.+|...+  ..++|+| ++.+|++|
T Consensus       327 ~~~~~~~~~~h---~~~v~~--v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v--~~l~~~~-~~~~l~sg  398 (410)
T 1vyh_C          327 TGMCLMTLVGH---DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV--TSLDFHK-TAPYVVTG  398 (410)
T ss_dssp             TTEEEEEEECC---SSCEEE--EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE--EEEEECS-SSSCEEEE
T ss_pred             CCceEEEEECC---CCcEEE--EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE--EEEEEcC-CCCEEEEE
Confidence            98877776422   223433  7799999999999999999999999999999998766554  4688999 56899999


Q ss_pred             ccCCeEEEEecC
Q 009380          525 TGGGQVYVWTSD  536 (536)
Q Consensus       525 s~Dg~v~iW~~d  536 (536)
                      +.||.|+||++.
T Consensus       399 s~D~~i~vW~~r  410 (410)
T 1vyh_C          399 SVDQTVKVWECR  410 (410)
T ss_dssp             ETTSEEEEEC--
T ss_pred             eCCCcEEEEeCC
Confidence            999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.4e-43  Score=346.80  Aligned_cols=290  Identities=13%  Similarity=0.182  Sum_probs=254.3

Q ss_pred             CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380          225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD  304 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d  304 (536)
                      .....+++|.+.|++++|+|  ++.+|++|+.||+|+|||+.+    ...+..+..|...|.+++|+|++ .+|++++.|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~--d~~~l~s~s~Dg~v~iWd~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d  118 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGT--DSRLLLSASQDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLD  118 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTT----CCEEEEEECSSSCEEEEEECTTS-SEEEEEETT
T ss_pred             hhheeecCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCC----CCcceEeecCCccEEEEEECCCC-CEEEEEeCC
Confidence            33455788999999999999  999999999999999999987    67888899999999999999998 999999999


Q ss_pred             CeEEEEECCCCe-----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380          305 GLIRLMDAEKEV-----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       305 g~I~vwd~~~~~-----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~  379 (536)
                      +.|++||+.+..     ...+.+|...|.++.|++++  .+++++.|+.|++||+++++.+..+.+|...|.+++|+|++
T Consensus       119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~  196 (340)
T 1got_B          119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence            999999998642     23455788999999999875  69999999999999999999999999999999999999977


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380          380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG  459 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  459 (536)
                       .+|++|+.|+.|++||++++.    ....+.+|...|++++|+|++++|++++.|++|++||+++.+....+.+.....
T Consensus       197 -~~l~sg~~d~~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~  271 (340)
T 1got_B          197 -RLFVSGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC  271 (340)
T ss_dssp             -SEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             -CEEEEEeCCCcEEEEECCCCe----eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCccc
Confidence             799999999999999999853    444556899999999999999999999999999999999887766665433211


Q ss_pred             ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                       .  +..++|+|+|.+|++|+.|+.|++||+.+++.+..+.+|...+.  .+.|+| ++.+|++|+.||.|+|||
T Consensus       272 -~--v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~--~~~~s~-dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          272 -G--ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -C--EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             -c--eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEE--EEEEcC-CCCEEEEEcCCccEEecC
Confidence             2  33478999999999999999999999999988888888665543  678888 679999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-42  Score=338.96  Aligned_cols=289  Identities=18%  Similarity=0.213  Sum_probs=248.3

Q ss_pred             ccccCCceEEEEEEec--CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          230 ARIMPGRITQMKFLPC--SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      .+.|.+.|++++|+|.  .++.+|++|+.|++|+||++....  ......+.+|...|.+++|++++ .++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~--~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER--LDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC--eeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcE
Confidence            4689999999999983  136799999999999999997521  23445788999999999999998 999999999999


Q ss_pred             EEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          308 RLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       308 ~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ++||+.++..... ..+...+.+++|+|++ ++|++|+.+|.|++||+++++....+..|...|.+++|+|++ .+|++|
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg  182 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASG  182 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEE
Confidence            9999998876544 4567789999999998 899999999999999999999998999999999999999988 799999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      +.||.|++||+++++    ....+.+|...|.+++|+|++++|++++.|+.|++||+++.+....+...   ...+  ..
T Consensus       183 ~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h---~~~v--~~  253 (321)
T 3ow8_A          183 AIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH---ASWV--LN  253 (321)
T ss_dssp             ETTSCEEEEETTTTE----EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC---SSCE--EE
T ss_pred             cCCCeEEEEECCCCc----EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC---CCce--EE
Confidence            999999999999853    44455689999999999999999999999999999999988776665321   1223  34


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++|+|++.+|++|+.|+.|++||+.+++++..+.+|...+  ..++|+| ++.+|++++.||.|+|||+
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v--~~v~~s~-~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQV--WGVKYNG-NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcE--EEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence            7899999999999999999999999999999988765544  4688888 5689999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.7e-42  Score=340.90  Aligned_cols=292  Identities=17%  Similarity=0.201  Sum_probs=253.1

Q ss_pred             CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380          225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD  304 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d  304 (536)
                      .....+++|.+.|++++|+|  ++.+|++|+.||+|+|||..+    ......+..|...|.+++|+|++ .+|++++.|
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~--d~~~l~s~s~Dg~v~vWd~~~----~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d  127 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFT----TNKEHAVTMPCTWVMACAYAPSG-CAIACGGLD  127 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT----CCEEEEEECSSSCCCEEEECTTS-SEEEEESTT
T ss_pred             EEEEEecCCCCeEEEEEECC--CCCEEEEEeCCCeEEEEECCC----CCcceEEecCCCCEEEEEECCCC-CEEEEeeCC
Confidence            33455789999999999999  999999999999999999987    67778888899999999999999 999999999


Q ss_pred             CeEEEEECCCC-------eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEec
Q 009380          305 GLIRLMDAEKE-------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP  377 (536)
Q Consensus       305 g~I~vwd~~~~-------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p  377 (536)
                      +.+++|++...       ....+..|...|.+++|+|++ ..|++++.||+|++||+++++.+..+.+|...|.+++|+|
T Consensus       128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~  206 (354)
T 2pbi_B          128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAP  206 (354)
T ss_dssp             SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECC
T ss_pred             CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEe
Confidence            99999998643       234455789999999999998 7999999999999999999999999999999999999998


Q ss_pred             CC-CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380          378 RN-PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       378 ~~-~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  456 (536)
                      .. +++|++|+.||.|++||+++++    ....+..|...|++++|+|++.+|++++.|++|++||++.......+....
T Consensus       207 ~~~g~~l~sgs~Dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~  282 (354)
T 2pbi_B          207 SETGNTFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES  282 (354)
T ss_dssp             CSSCCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence            52 3799999999999999999863    344556899999999999999999999999999999998876665553322


Q ss_pred             CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       457 ~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      . .  .....+.|+|++.+|++|+.|+.|++||+.+++.+..+.+|...+  ..++|+| ++.+|++|+.||.|+||+
T Consensus       283 ~-~--~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v--~~l~~sp-dg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          283 I-I--FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV--STLRVSP-DGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             C-C--SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE--EEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred             c-c--cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcE--EEEEECC-CCCEEEEEcCCCCEEecC
Confidence            1 1  123347899999999999999999999999998888888766544  4688999 679999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.1e-42  Score=345.32  Aligned_cols=305  Identities=13%  Similarity=0.129  Sum_probs=236.6

Q ss_pred             cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC------CCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK------LGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~------dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      +.....|++..   .....|...|++|+|+|  ||.+|++|+.      |+.|++|+..+.............|...|.+
T Consensus        25 ~~~~~~w~~p~---~~p~~H~~~V~~v~fSp--DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~   99 (357)
T 4g56_B           25 SSKGSAWGRPV---TAPACMEVQIGAVRYRR--DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTD   99 (357)
T ss_dssp             ------------------CCCSEEEEEEECS--SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEE
T ss_pred             CccccccCCCC---CCcccccCCEEEEEECC--CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEE
Confidence            34567788632   23467999999999999  9999999997      7789999987654323445566679999999


Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCCCeEE-----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE  362 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~  362 (536)
                      ++|+|++  .+++++.||+|++||+.++...     ...+|...|.+++|+|++ ++|++|+.||.|++||+++++.+..
T Consensus       100 ~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~  176 (357)
T 4g56_B          100 VAWVSEK--GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKS  176 (357)
T ss_dssp             EEEETTT--EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEcCCC--CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEE
Confidence            9999985  6778889999999999876532     234688999999999998 8999999999999999999999999


Q ss_pred             EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-CCeEEEEeCCCcEEEE
Q 009380          363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIW  441 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~dg~I~iw  441 (536)
                      +.+|...|++++|+|++..++++++.||.|++||+++++.  ........|...+.+++|+|+ +.+|++++.|+.|++|
T Consensus       177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w  254 (357)
T 4g56_B          177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP--ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV  254 (357)
T ss_dssp             ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC--BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred             EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce--eeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence            9999999999999998877999999999999999998642  122333467788999999996 5688899999999999


Q ss_pred             eCCCCCcceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380          442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT  520 (536)
Q Consensus       442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~  520 (536)
                      |+++++....+....   ..+.  .++|+|++ ++|++|+.|+.|+|||+.+++++..+ +|. ..+ ..++|+|.++.+
T Consensus       255 d~~~~~~~~~~~~~~---~~v~--~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~-~~V-~~vafsP~d~~~  326 (357)
T 4g56_B          255 NIKNPDSAQTSAVHS---QNIT--GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHR-DFV-TGVAWSPLDHSK  326 (357)
T ss_dssp             ESSCGGGCEEECCCS---SCEE--EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCS-SCE-EEEEECSSSTTE
T ss_pred             ECCCCcEeEEEeccc---eeEE--EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCC-CCE-EEEEEeCCCCCE
Confidence            999988887774322   2233  47799987 57999999999999999999877665 443 344 468999988899


Q ss_pred             EEEEccCCeEEEEecC
Q 009380          521 LAGATGGGQVYVWTSD  536 (536)
Q Consensus       521 lasgs~Dg~v~iW~~d  536 (536)
                      |++|+.||.|++|++.
T Consensus       327 l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          327 FTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EEEEETTSCEEEEECC
T ss_pred             EEEEcCCCeEEEEECC
Confidence            9999999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6e-43  Score=352.49  Aligned_cols=298  Identities=15%  Similarity=0.210  Sum_probs=252.8

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ...+++|.+.|++++|+|  ++.+|++|+.||+|+|||+.+    ......+..|...|.+++|+|++ .+|++|+.|+.
T Consensus        59 ~~~l~gH~~~V~~~~~sp--~~~~l~s~s~D~~v~iWd~~~----~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~  131 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTP--EKNWIVSASQDGRLIVWNALT----SQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSA  131 (380)
T ss_dssp             EEEECCCSSCEEEEEECT--TSSCEEEEETTSEEEEEETTT----TEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSC
T ss_pred             eecccccccEEEEEEEcC--CCCEEEEEeCCCeEEEEECCC----CccceEEecCCCCEEEEEECCCC-CEEEEeeCCCc
Confidence            345689999999999999  999999999999999999987    67888999999999999999999 99999999999


Q ss_pred             EEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-----eccCCCeEEE
Q 009380          307 IRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-----LLHEARINTI  373 (536)
Q Consensus       307 I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-----~~h~~~i~~i  373 (536)
                      |++||+.+..        ...+.+|...|.++.|.|++...|++|+.|++|++||+++++.+..+     .+|...|.++
T Consensus       132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~  211 (380)
T 3iz6_a          132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL  211 (380)
T ss_dssp             CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred             EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence            9999987532        23455788999999999987678999999999999999999988776     5789999999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          374 DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      +|++.++++|++|+.|++|++||++...   .....+.+|...|++++|+|++.+|++++.|++|++||+++++.+..+.
T Consensus       212 ~~~~~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          212 SINSLNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             EECSSSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             EeecCCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence            9998666899999999999999998532   2445566899999999999999999999999999999999988777664


Q ss_pred             ccCCC--CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc---CCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380          454 HNNQT--GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ---SPYISAIPCRFHAHPHQVGTLAGATGGG  528 (536)
Q Consensus       454 ~~~~~--~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~---~~~~~~~~~~~~~~p~~~~~lasgs~Dg  528 (536)
                      .....  ........++|+|+|.+|++|+.||.|++||...++.+..+.   ..|...+ ..++|+| ++.+|++|+.||
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v-~~l~~s~-dg~~l~sgs~D~  366 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI-SCLGLSS-DGSALCTGSWDK  366 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCC-CEEEECS-SSSEEEEECTTS
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCce-EEEEECC-CCCEEEEeeCCC
Confidence            32211  111113347899999999999999999999999888776662   2344444 4688999 679999999999


Q ss_pred             eEEEEecC
Q 009380          529 QVYVWTSD  536 (536)
Q Consensus       529 ~v~iW~~d  536 (536)
                      .|+||++.
T Consensus       367 ~i~iW~~~  374 (380)
T 3iz6_a          367 NLKIWAFS  374 (380)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEecC
Confidence            99999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-41  Score=331.20  Aligned_cols=292  Identities=17%  Similarity=0.216  Sum_probs=247.2

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      ++....++.|.+.|++++|+|  ++.+|++|+.||.|+|||+.+    ...+..+..|..+|.++.|+|++ ++|++|+.
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp--~~~~l~s~~~dg~v~lWd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~   75 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHP--TEPWVLTTLYSGRVELWNYET----QVEVRSIQVTETPVRAGKFIARK-NWIIVGSD   75 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECS--SSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGG-TEEEEEET
T ss_pred             ceeEEeecCCCCceEEEEECC--CCCEEEEEcCCCcEEEEECCC----CceeEEeeccCCcEEEEEEeCCC-CEEEEECC
Confidence            334556788999999999999  999999999999999999987    67888999999999999999998 99999999


Q ss_pred             CCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCC
Q 009380          304 DGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       304 dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      |++|++||+.++... .+..|...|.+++|+|++ .+|++|+.||+|++||++++. ....+.+|...|.+++|+|.++.
T Consensus        76 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  154 (304)
T 2ynn_A           76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS  154 (304)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTT
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCC
Confidence            999999999988655 455788999999999998 799999999999999999874 45678899999999999996668


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      +|++|+.|++|++||++...    ..... ..|...+..+.|+|  ++.+|++++.|++|++||+++++.+..+..+.  
T Consensus       155 ~l~sgs~D~~v~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--  228 (304)
T 2ynn_A          155 TFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--  228 (304)
T ss_dssp             EEEEEETTSEEEEEETTCSS----CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--
T ss_pred             EEEEEeCCCeEEEEECCCCC----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--
Confidence            99999999999999998753    23333 35778899999987  67899999999999999999988877775322  


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEEEEccCCeEEEEec
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS  535 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~lasgs~Dg~v~iW~~  535 (536)
                       ..+.  .++|+|++.+|++|+.||.|++||..+++.+..+..+.....  .++++|.++. +|++|+.|| +.+|++
T Consensus       229 -~~v~--~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          229 -SNVS--FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW--CIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             -SCEE--EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEE--EEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             -CCEE--EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEE--EEEECCCCCceEEEEecCCc-eEEEEe
Confidence             1233  377999999999999999999999999999999887655443  5788886544 477777665 666665

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3e-41  Score=358.83  Aligned_cols=324  Identities=15%  Similarity=0.232  Sum_probs=281.2

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      ....+.+|...|.++.|+|+++.++.          +..|+.+++|+...........|.+.|++++|+|  ++.+|+++
T Consensus       254 ~~~~~~~~~~~v~~v~~~~d~~~l~~----------~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~  321 (577)
T 2ymu_A          254 LLQTLTGHSSSVNGVAFRPDGQTIAS----------ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP--DGQTIASA  321 (577)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEETTSCEEEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred             EEEEEecCCCCEEEEEEcCCCCEEEE----------EeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECC--CCCEEEEE
Confidence            34567889999999999999998874          4778899999987666666788999999999999  99999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      +.||.|++|++.     ...+..+.+|...|.+++|+|++ .+|++++.||.|++||........+..|...|.+++|+|
T Consensus       322 ~~d~~i~~w~~~-----~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~  395 (577)
T 2ymu_A          322 SDDKTVKLWNRN-----GQHLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP  395 (577)
T ss_dssp             ETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECT
T ss_pred             eCCCeEEEEeCC-----CCeeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECC
Confidence            999999999987     45677889999999999999999 999999999999999987777777778999999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      ++ ++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+..     .....+.+|.
T Consensus       396 dg-~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-----~~~~~~~~~~  467 (577)
T 2ymu_A          396 DG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-----QLLQTLTGHS  467 (577)
T ss_dssp             TS-SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-----CEEEEEECCS
T ss_pred             CC-CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-----CEEEEEcCCC
Confidence            98 79999999999999995 577788889999999999999987 7999999999999999753     2455666899


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      ..|++++|+|++++|++++.|+.|++||. +++.+..+...   ...+.  .++|+|++++|++++.|+.|++||. +++
T Consensus       468 ~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h---~~~v~--~l~~s~dg~~l~s~~~dg~v~lwd~-~~~  540 (577)
T 2ymu_A          468 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH---SSSVR--GVAFSPDGQTIASASDDKTVKLWNR-NGQ  540 (577)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC---SSCEE--EEEECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC---CCCEE--EEEEcCCCCEEEEEECcCEEEEEeC-CCC
Confidence            99999999999999999999999999995 55655555422   12233  4789999999999999999999996 567


Q ss_pred             cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          495 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       495 ~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .+..+.+|...+  ..++|+| ++.+|++++.||.|++||
T Consensus       541 ~~~~~~~h~~~v--~~~~fs~-dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          541 LLQTLTGHSSSV--WGVAFSP-DGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEEECCSSCE--EEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             EEEEEcCCCCCE--EEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence            888888866544  3678898 679999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-41  Score=346.19  Aligned_cols=288  Identities=13%  Similarity=0.184  Sum_probs=255.5

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      ...+.+|.+.|.++.|+|++..++          +++.||.|++||+... ....+++|.+.|++++|+|  ++.+|++|
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~----------s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~--~~~~l~sg  168 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMV----------SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASC  168 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEE----------EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred             eEeecccCCcEEEEEEcCCCCEEE----------EEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC--CCCEEEEE
Confidence            456889999999999999999888          4588999999998543 3445688999999999999  99999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEec
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQ  333 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~  333 (536)
                      +.||+|+|||+.+    ...+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.++.... +.+|...|.+++|+
T Consensus       169 s~D~~i~iwd~~~----~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~  243 (410)
T 1vyh_C          169 SADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  243 (410)
T ss_dssp             ETTSCCCEEETTS----SCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             eCCCeEEEEeCCC----CceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence            9999999999987    67888999999999999999998 999999999999999999887654 45688899999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC-------------------CCEEEEEeCCCcEEE
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN-------------------PNIMATSSTDGTACI  394 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~-------------------~~~l~s~s~dg~i~i  394 (536)
                      +++ .+|++|+.||.|++||++++++...+..|...|.+++|+|++                   +.+|++|+.|+.|++
T Consensus       244 ~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          244 QDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             TTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCC-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            998 899999999999999999999999999999999999999963                   358999999999999


Q ss_pred             EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380          395 WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS  474 (536)
Q Consensus       395 wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  474 (536)
                      ||++++.    ....+.+|...|.+++|+|+|.+|++++.|++|++||+.+++....+..+.   ..+.  .+.|+|++.
T Consensus       323 wd~~~~~----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~---~~v~--~l~~~~~~~  393 (410)
T 1vyh_C          323 WDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE---HFVT--SLDFHKTAP  393 (410)
T ss_dssp             EETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS---SCEE--EEEECSSSS
T ss_pred             EECCCCc----eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC---CcEE--EEEEcCCCC
Confidence            9999853    455566899999999999999999999999999999999988887775322   2233  478999999


Q ss_pred             EEEEEcCCCcEEEEcC
Q 009380          475 CVFIGNMTRTVEVISP  490 (536)
Q Consensus       475 ~l~~gs~dg~I~v~d~  490 (536)
                      +|++|+.|+.|+||++
T Consensus       394 ~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          394 YVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEETTSEEEEEC-
T ss_pred             EEEEEeCCCcEEEEeC
Confidence            9999999999999986

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.8e-41  Score=361.62  Aligned_cols=326  Identities=16%  Similarity=0.204  Sum_probs=270.0

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      +...+.++.|+|||+.+++.           .++.+.||++.. .....+.+|.+.|++++|+|  +|.+||+|+.||+|
T Consensus        17 ~~g~~~~~~~spdg~~l~~~-----------~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~lasg~~d~~v   83 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYC-----------NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYYCASGDVHGNV   83 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEE-----------ETTEEEEEETTCSSCCEEECCCSSCEEEEEECT--TSSEEEEEETTSEE
T ss_pred             ccCceeEEeeCCCCCEEEeC-----------CCCEEEEecCCCcccCeEecCCCCceEEEEECC--CCcEEEEEeCCCCE
Confidence            45667788999999999865           245899999853 34556788999999999999  99999999999999


Q ss_pred             EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380          261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN  336 (536)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  336 (536)
                      +|||+.+..  ......+.+|.+.|.+++|+|++ .+|++++.+    +.|++||... ....+.+|...|.+++|+|++
T Consensus        84 ~lWd~~~~~--~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~gh~~~v~~v~f~p~~  159 (611)
T 1nr0_A           84 RIWDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSR  159 (611)
T ss_dssp             EEEESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSS
T ss_pred             EEeECCCCc--ceeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCCC-CcceecCCCCCceEEEECCCC
Confidence            999997532  34556788999999999999999 899988875    4788888543 233456789999999999998


Q ss_pred             CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee------
Q 009380          337 VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV------  410 (536)
Q Consensus       337 ~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~------  410 (536)
                      +..|++|+.|++|++||..+++.+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.+++    ....+      
T Consensus       160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~----~~~~~~~~~~~  234 (611)
T 1nr0_A          160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLK  234 (611)
T ss_dssp             SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEECBCTTSS
T ss_pred             CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc----Eeeeecccccc
Confidence            6689999999999999999988889999999999999999987 799999999999999998764    11122      


Q ss_pred             -ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380          411 -LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       411 -~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d  489 (536)
                       .+|...|.+++|+|+|++|++++.|++|+|||+.+++....+........  ..+.+.|  ++..+++++.|+.|++|+
T Consensus       235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~s~s~d~~i~~~~  310 (611)
T 1nr0_A          235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED--QQLGIIW--TKQALVSISANGFINFVN  310 (611)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG--CEEEEEE--CSSCEEEEETTCCEEEEE
T ss_pred             ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccc--eeEEEEE--cCCEEEEEeCCCcEEEEe
Confidence             27999999999999999999999999999999999887777653322211  1223445  678999999999999999


Q ss_pred             CCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          490 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       490 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ..+++....+.+|...+  ..++|+| ++.+|++++.||.|++||++
T Consensus       311 ~~~~~~~~~~~gh~~~v--~~l~~sp-dg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          311 PELGSIDQVRYGHNKAI--TALSSSA-DGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             TTTTEEEEEECCCSSCE--EEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred             CCCCCcceEEcCCCCCE--EEEEEeC-CCCEEEEEeCCCcEEEEECC
Confidence            99888777777765544  4688999 67999999999999999973

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.3e-42  Score=350.16  Aligned_cols=299  Identities=24%  Similarity=0.384  Sum_probs=248.7

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      ...|..+|+||+|||. ++.+||+|+.||.|+|||+....  ......+.+|.+.|++|+|+|.++.+|++|+.||+|++
T Consensus       115 ~~~~~~~V~~l~~~P~-~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i  191 (435)
T 4e54_B          115 AAPFDRRATSLAWHPT-HPSTVAVGSKGGDIMLWNFGIKD--KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL  191 (435)
T ss_dssp             EEECSSCEEEEEECSS-CTTCEEEEETTSCEEEECSSCCS--CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred             CCCCCCCEEEEEEeCC-CCCEEEEEeCCCEEEEEECCCCC--ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence            4678899999999995 56799999999999999998643  34555677899999999999864489999999999999


Q ss_pred             EECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          310 MDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       310 wd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ||++++.......+   ...+.+++|+|++ .+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++..+|++|
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEe
Confidence            99998876655543   3467899999998 899999999999999986 456778889999999999999988899999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE-eccCCCCceeeee
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI-HHNNQTGRWISSF  465 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~  465 (536)
                      +.|+.|+|||+++..... ......+|...|++++|+|+|.+|++++.|+.|+|||+.++.....+ .|.......+..+
T Consensus       270 s~d~~v~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKA-SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPI  348 (435)
T ss_dssp             ETTSBCCEEETTTCCSSS-CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCC
T ss_pred             cCcceeeEEecccccccc-eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeE
Confidence            999999999999865321 23344579999999999999999999999999999999988776665 3444555555666


Q ss_pred             EEEEcCCCCEEEEEcC------------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          466 RAIWGWDDSCVFIGNM------------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~------------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      .+.|++++.++++++.            ++.|++||..+++.+..+..+|...+.+...|+| ++.+|++|+ |+.|+||
T Consensus       349 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW  426 (435)
T 4e54_B          349 KAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIW  426 (435)
T ss_dssp             BCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEEC
T ss_pred             EEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEE
Confidence            6788888888777642            3579999999999998887777776656567999 678998876 7899999


Q ss_pred             ecC
Q 009380          534 TSD  536 (536)
Q Consensus       534 ~~d  536 (536)
                      +++
T Consensus       427 ~~~  429 (435)
T 4e54_B          427 SQQ  429 (435)
T ss_dssp             CCC
T ss_pred             ECC
Confidence            975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.8e-40  Score=324.84  Aligned_cols=290  Identities=19%  Similarity=0.238  Sum_probs=249.4

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      ..+.+|.+.|++++|+|  ++++|++|+.||.|++|++.+    ......+.+|...|.+++|+|++ ++|++++.|+.|
T Consensus        17 ~~~~gh~~~v~~~~~s~--~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i   89 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYD----GKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTL   89 (312)
T ss_dssp             EEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             EEEcccCCcEEEEEECC--CCCEEEEeeCCCeEEEEeCCC----cccchhhccCCCceEEEEEcCCC-CEEEEECCCCEE
Confidence            34578999999999999  999999999999999999987    67788899999999999999998 999999999999


Q ss_pred             EEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          308 RLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       308 ~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ++||+.++.... +..|...|.+++|+|++ ++|++|+.||.|++||+++++.+..+..|...|.+++|+|++ .+|+++
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~  167 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSS  167 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEE
Confidence            999999886554 45688999999999998 899999999999999999999999999999999999999977 799999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          387 STDGTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      +.||.|++||+++++    ..... ..+...+..++|+|++++|++++.|+.|++||+.+++....+.........+   
T Consensus       168 ~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---  240 (312)
T 4ery_A          168 SYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI---  240 (312)
T ss_dssp             ETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCC---
T ss_pred             eCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEE---
Confidence            999999999999853    22222 2567789999999999999999999999999999888776664322221111   


Q ss_pred             EEEE-cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc--cCCeEEEEecC
Q 009380          466 RAIW-GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT--GGGQVYVWTSD  536 (536)
Q Consensus       466 ~~~~-s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs--~Dg~v~iW~~d  536 (536)
                      ...| .+++.+|++|+.|+.|++||+.+++.+..+.+|...+  ..++|+| ++.+|++++  .||.|++|+.|
T Consensus       241 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVV--ISTACHP-TENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCE--EEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcE--EEEeecC-cCCceEEEEccCCccEEEecCC
Confidence            1233 4678899999999999999999999999998876554  4678999 458999886  69999999975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.6e-41  Score=331.08  Aligned_cols=300  Identities=10%  Similarity=0.089  Sum_probs=231.6

Q ss_pred             EecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC-------CCCCCCceEEeccCCCCEEEEEE
Q 009380          218 DIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS-------QQDEDNGIYLFRTHLGPISGIVT  290 (536)
Q Consensus       218 ~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~-------~~~~~~~~~~~~~h~~~V~~l~~  290 (536)
                      +.|++...   ....|...|.+++|+|  ||.+|++++ |+++++||...       .............|...|.+++|
T Consensus        17 r~w~~~~~---~~~~~~~~v~~~~fs~--dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   90 (344)
T 4gqb_B           17 REWNLPPN---APACMERQLEAARYRS--DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTW   90 (344)
T ss_dssp             ------CC---SCSSCCSEEEEEEECT--TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEE
T ss_pred             cccCCCCC---CcccccCCEEEEEECC--CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEE
Confidence            55775322   2356778899999999  999999887 67778776321       00001222233446778999999


Q ss_pred             ecCCCCEEEEEECCCeEEEEECCCCeEE-----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380          291 QQYCLSKIFTSCYDGLIRLMDAEKEVFD-----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       291 ~~~~~~~l~s~s~dg~I~vwd~~~~~~~-----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                      +|+  ..|++|+.||+|++||+.+++..     ...+|...|.+++|+|++ ++|++|+.||+|++||+++++++..+.+
T Consensus        91 s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~  167 (344)
T 4gqb_B           91 VGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRA  167 (344)
T ss_dssp             ETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            998  57899999999999999887532     234789999999999998 8999999999999999999999999999


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCC
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~  444 (536)
                      |...|++++|+|++..+|++|+.|++|++||+++++.  ...+....|...+.+++|+| ++++|++|+.|++|+|||++
T Consensus       168 h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          168 HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             cCCceEEEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            9999999999999878999999999999999998641  11122235667899999999 56788999999999999999


Q ss_pred             CCCcceEEeccCCCCceeeeeEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          445 NFENTSMIHHNNQTGRWISSFRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      +++.+..+....   ..+.  .++|+|++ .+|++|+.|+.|+|||+.+++++ .+.+|...+  ..++|+|.+..+|++
T Consensus       246 ~~~~~~~~~~h~---~~v~--~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V--~~v~~sp~~~~llas  317 (344)
T 4gqb_B          246 STSCVLSSAVHS---QCVT--GLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFV--RDATWSPLNHSLLTT  317 (344)
T ss_dssp             C--CCEEEECCS---SCEE--EEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCE--EEEEECSSSTTEEEE
T ss_pred             CCcEEEEEcCCC---CCEE--EEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCE--EEEEEeCCCCeEEEE
Confidence            999888775322   2233  47899997 57999999999999999998654 556655443  468999966567889


Q ss_pred             EccCCeEEEEecC
Q 009380          524 ATGGGQVYVWTSD  536 (536)
Q Consensus       524 gs~Dg~v~iW~~d  536 (536)
                      |+.||+|++|+++
T Consensus       318 ~s~D~~v~~w~v~  330 (344)
T 4gqb_B          318 VGWDHQVVHHVVP  330 (344)
T ss_dssp             EETTSCEEEEECC
T ss_pred             EcCCCeEEEEECC
Confidence            9999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3e-40  Score=351.04  Aligned_cols=326  Identities=15%  Similarity=0.224  Sum_probs=282.5

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      ....+.+|...|.++.|+|++..++.          ++.|+.|++|+...........|...|++++|+|  ++.+|+++
T Consensus       213 ~~~~~~~~~~~v~~~~~s~dg~~l~~----------~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~--d~~~l~~~  280 (577)
T 2ymu_A          213 LLQTLTGHSSSVRGVAFSPDGQTIAS----------ASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRP--DGQTIASA  280 (577)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEEE----------EETTSCEEEECTTSCEEEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred             EEEEEecCCCCEEEEEECCCCCEEEE----------EeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCEEEEE
Confidence            34567889999999999999998884          4778999999987666667788999999999999  99999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      +.|+.|++|+..     ...+..+.+|...|.+++|+|++ .+|++++.|+.|++||+.......+..|...|.+++|+|
T Consensus       281 ~~d~~i~~w~~~-----~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~  354 (577)
T 2ymu_A          281 SDDKTVKLWNRN-----GQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSP  354 (577)
T ss_dssp             ETTSCEEEEETT-----SCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT
T ss_pred             eCCCEEEEEeCC-----CcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECC
Confidence            999999999976     56778889999999999999998 999999999999999999888888888999999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      ++ .+|++|+.||.|++||. +++.+..+..|...|.+++|+|++ .+|++++.|+.|++||...     .....+.+|.
T Consensus       355 ~g-~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-----~~~~~~~~~~  426 (577)
T 2ymu_A          355 DG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-----QLLQTLTGHS  426 (577)
T ss_dssp             TS-SEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-----CEEEEEECCS
T ss_pred             CC-CEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-----CEEEEecCCC
Confidence            98 89999999999999995 577788899999999999999988 6899999999999999643     2445566899


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      ..|++++|+|++++|++++.|+.|++||.. ++....+...   ...+.  .++|+|++++|++++.|+.|++||. +++
T Consensus       427 ~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~---~~~v~--~~~~spd~~~las~~~d~~i~iw~~-~~~  499 (577)
T 2ymu_A          427 SSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGH---SSSVR--GVAFSPDGQTIASASDDKTVKLWNR-NGQ  499 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECC---SSCEE--EEEECTTSCEEEEEETTSEEEEEET-TSC
T ss_pred             CCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCC---CCCEE--EEEEcCCCCEEEEEeCCCEEEEEcC-CCC
Confidence            999999999999999999999999999964 4444444321   12233  4789999999999999999999995 567


Q ss_pred             cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          495 SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       495 ~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .+..+.+|...+.  .++|+| ++.+|++++.||.|+|||.+
T Consensus       500 ~~~~~~~h~~~v~--~l~~s~-dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          500 LLQTLTGHSSSVR--GVAFSP-DGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEEEEECCSSCEE--EEEECT-TSSCEEEEETTSEEEEECTT
T ss_pred             EEEEEeCCCCCEE--EEEEcC-CCCEEEEEECcCEEEEEeCC
Confidence            8888887665543  678898 67999999999999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.2e-40  Score=328.58  Aligned_cols=289  Identities=19%  Similarity=0.174  Sum_probs=248.0

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~t  253 (536)
                      ....+.+|.+.|.++.|+++++.++          +++.||.|++||+... .......|...|.+++|+|  ++.+|++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~----------s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~s  114 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLL----------SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--SGNYVAC  114 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEE----------EEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT--TSSEEEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEE----------EEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC--CCCEEEE
Confidence            4567899999999999999999888          4588999999997443 2334567899999999999  9999999


Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEe
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQ  332 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~  332 (536)
                      |+.|+.|++|++.+..........+.+|.+.|.++.|++++  .|++++.|++|++||+.++..... .+|...|.+++|
T Consensus       115 ~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~  192 (340)
T 1got_B          115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL  192 (340)
T ss_dssp             EETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEE
Confidence            99999999999987432234566788999999999999875  699999999999999999876554 468899999999


Q ss_pred             cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380          333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS  412 (536)
Q Consensus       333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~  412 (536)
                      +|++ .+|++|+.||.|++||++++..+..+.+|...|++++|+|++ ++|++|+.||+|++||++...     ......
T Consensus       193 ~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~-----~~~~~~  265 (340)
T 1got_B          193 APDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ-----ELMTYS  265 (340)
T ss_dssp             CTTS-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-----EEEEEC
T ss_pred             CCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCc-----EEEEEc
Confidence            9998 899999999999999999999999999999999999999987 799999999999999998753     223333


Q ss_pred             ---ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380          413 ---HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       413 ---~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d  489 (536)
                         +...|.+++|+|+|.+|++++.|+.|++||+.+.+....+..+.   ..+.  .+.|+|+|.+|++|+.|+.|+|||
T Consensus       266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~---~~v~--~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD---NRVS--CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEE--EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC---CcEE--EEEEcCCCCEEEEEcCCccEEecC
Confidence               33579999999999999999999999999999888777664222   2333  477999999999999999999997

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-41  Score=346.41  Aligned_cols=343  Identities=15%  Similarity=0.188  Sum_probs=276.0

Q ss_pred             cccceeeeecCCCCc-ccccccccccccccccccceEEecccccCc---cccccccCCceEEEEEEecCCccEEEEEeCC
Q 009380          182 EFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      +...|.++.|+|+++ +++.....+....+.+.||.|+||++....   ......|...|++++|+|  ++.+|++|+.|
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d   88 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSH--NNKIIAGALDN   88 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECS--SSSCEEEEESS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECC--CCCeEEEEccC
Confidence            346788999999997 666543333333344788999999986543   222345889999999999  99999999999


Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe------EEE----eecCCCce
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV------FDL----VYSSEYAV  327 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~------~~~----~~~~~~~i  327 (536)
                      |.|++|++.........+..+.+|...|.+++|+|++..+|++++.||.|++||+.++.      ...    ...|...|
T Consensus        89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            99999999863222357888899999999999999844999999999999999998875      222    24678899


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc------CCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCC
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH------EARINTIDFNPRNPNIMATSSTDG---TACIWDLR  398 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~  398 (536)
                      .+++|+|++..+|++++.||.|++||+++++.+..+..|      ...|.+++|+|++..+|++++.|+   .|++||++
T Consensus       169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~  248 (416)
T 2pm9_A          169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR  248 (416)
T ss_dssp             CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred             eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence            999999996689999999999999999999988888766      789999999998878999999998   99999999


Q ss_pred             CCCCCCCCcceee-cccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC-CE
Q 009380          399 SMATDKPEPMKVL-SHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD-SC  475 (536)
Q Consensus       399 ~~~~~~~~~~~~~-~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~  475 (536)
                      ++.   .....+. +|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+.....   .+  ..++|+|++ .+
T Consensus       249 ~~~---~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~v--~~~~~s~~~~~~  320 (416)
T 2pm9_A          249 NAN---TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN---WC--FKTKFAPEAPDL  320 (416)
T ss_dssp             STT---SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS---CC--CCEEECTTCTTE
T ss_pred             CCC---CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC---ce--EEEEECCCCCCE
Confidence            853   1333444 7999999999999 999999999999999999999888777753221   22  337799998 89


Q ss_pred             EEEEcCCCcEEEEcCCccccceeccC--------------C--------------------ceeeeeeeEeecCCCCCEE
Q 009380          476 VFIGNMTRTVEVISPAQRRSVATLQS--------------P--------------------YISAIPCRFHAHPHQVGTL  521 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~~~~~~~~l~~--------------~--------------------~~~~~~~~~~~~p~~~~~l  521 (536)
                      |++++.|+.|++|++.+.........              +                    +...+ ..++|+| ++.+|
T Consensus       321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~-dg~~l  398 (416)
T 2pm9_A          321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS-PAAHWAF-GGKLV  398 (416)
T ss_dssp             EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS-CCCEEET-TTEEE
T ss_pred             EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc-cceEEee-CCeEE
Confidence            99999999999999987754332211              0                    11121 3567888 67999


Q ss_pred             EEEccCCeEEEEecC
Q 009380          522 AGATGGGQVYVWTSD  536 (536)
Q Consensus       522 asgs~Dg~v~iW~~d  536 (536)
                      ++++.||.|+||+++
T Consensus       399 a~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          399 QITPDGKGVSITNPK  413 (416)
T ss_dssp             CBCTTSSCBCCBCCC
T ss_pred             EEeCCCCeEEEEEec
Confidence            999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.8e-41  Score=328.89  Aligned_cols=287  Identities=13%  Similarity=0.134  Sum_probs=248.9

Q ss_pred             ceecccccceeeeecCCCC----cccccccccccccccccccceEEecccccCcc---ccccccCCceEEEEEEecCCcc
Q 009380          177 FVIKDEFNGFKTCKDEGLG----VGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVR  249 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~----~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~  249 (536)
                      ..+.+|.+.|.++.|++++    ..++          +++.|+.|+||++.....   ..+.+|...|.+++|+|  ++.
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~----------tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~--~~~   93 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVV----------TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH--TLP   93 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEE----------EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS--SSS
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEE----------EEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC--CCC
Confidence            3457899999999999864    4455          678999999999754432   23578999999999999  999


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCcee
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVF  328 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~  328 (536)
                      ++++|+.|++|++||+.+    +..+..+..|...+.+++|+|++ .+|++++.||.|++||++++.... +..+...|.
T Consensus        94 ~l~s~s~D~~i~lWd~~~----~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~  168 (321)
T 3ow8_A           94 IAASSSLDAHIRLWDLEN----GKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL  168 (321)
T ss_dssp             EEEEEETTSEEEEEETTT----TEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred             EEEEEeCCCcEEEEECCC----CCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE
Confidence            999999999999999987    67888889999999999999999 999999999999999999876554 445678899


Q ss_pred             EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380          329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM  408 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~  408 (536)
                      +++|+|++ ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++ .+|++|+.|+.|++||++.+.    ...
T Consensus       169 ~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~----~~~  242 (321)
T 3ow8_A          169 SIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHAN----LAG  242 (321)
T ss_dssp             EEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCC----EEE
T ss_pred             EEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcc----eeE
Confidence            99999998 899999999999999999999999999999999999999987 799999999999999998753    445


Q ss_pred             eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      .+.+|...|.+++|+|++.+|++++.|++|+|||+.+++++..+....   ..+  ..++|+|++.+|++++.|+.|+||
T Consensus       243 ~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~---~~v--~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ---DQV--WGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS---SCE--EEEEECTTSSEEEEEETTCCEEEE
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC---CcE--EEEEECCCCCEEEEEeCCCeEEEE
Confidence            566899999999999999999999999999999999988877764221   123  347899999999999999999999


Q ss_pred             cCC
Q 009380          489 SPA  491 (536)
Q Consensus       489 d~~  491 (536)
                      |..
T Consensus       318 d~p  320 (321)
T 3ow8_A          318 DCP  320 (321)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            963

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.1e-40  Score=328.67  Aligned_cols=296  Identities=13%  Similarity=0.133  Sum_probs=233.6

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccC-c----cccccccCCceEEEEEEecCCccEEEEEe
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-P----ENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~----~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      .|...|.++.|+|||++++...+..+++|    ++.+.+|+.... +    ......|...|++++|+|  ++ .|++|+
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~W----d~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~-~l~~~s  100 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGASSLSGRCW----AGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG--ER-GILVAS  100 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEECCSSSCC----CEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET--TT-EEEEEE
T ss_pred             cccCCEEEEEECCCCCEEEEEeCCceEEe----eceeeeeccccccCCcceeeeeeccCCCEEEEEEeC--CC-eEEEEE
Confidence            35567899999999999997655555554    234444442111 1    111233567899999999  74 688999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecC
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQP  334 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~  334 (536)
                      .||+|+|||+.++...........+|.+.|++++|+|++ ++|++|+.|++|++||+.++..... .+|...|.+++|++
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            999999999987432111223456899999999999999 9999999999999999999877654 46899999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS  412 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~  412 (536)
                      ++..+|++++.||+|++||+++++.+..+.  .|...+.+++|+|++.++|++|+.||.|++||+++++    .+..+.+
T Consensus       180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----~~~~~~~  255 (344)
T 4gqb_B          180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS----CVLSSAV  255 (344)
T ss_dssp             SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEEC
T ss_pred             CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc----EEEEEcC
Confidence            987899999999999999999999887764  4567799999999887899999999999999999864    5566778


Q ss_pred             ccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcC
Q 009380          413 HKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISP  490 (536)
Q Consensus       413 ~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~  490 (536)
                      |...|++++|+|++ ++|++++.|++|+|||+.+++......|.    ..+.  .++|+|++. +|++|+.|+.|++|++
T Consensus       256 h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~----~~V~--~v~~sp~~~~llas~s~D~~v~~w~v  329 (344)
T 4gqb_B          256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHR----DFVR--DATWSPLNHSLLTTVGWDHQVVHHVV  329 (344)
T ss_dssp             CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCS----SCEE--EEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred             CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCC----CCEE--EEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence            99999999999987 57999999999999999887654433332    2344  478999986 4678999999999999


Q ss_pred             Cccc
Q 009380          491 AQRR  494 (536)
Q Consensus       491 ~~~~  494 (536)
                      .+..
T Consensus       330 ~~~~  333 (344)
T 4gqb_B          330 PTEP  333 (344)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            7753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-40  Score=337.19  Aligned_cols=324  Identities=15%  Similarity=0.157  Sum_probs=271.7

Q ss_pred             cccccceeeeecCCCCc-ccccccccccccccccccceEEeccc----ccCc-------cccccc----------cCCce
Q 009380          180 KDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSL----TLKP-------ENIARI----------MPGRI  237 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~----~~~~-------~~~~~~----------~~~~I  237 (536)
                      ..|.+.|.++.|+|++. +++.          ++.||.|.+|++    ....       ......          |.+.|
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  111 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAY----------GEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQV  111 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEE----------EETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCE
T ss_pred             eeccCceEEEEECCCCCcEEEE----------ecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCce
Confidence            44569999999999999 8874          477899999998    4433       111122          57799


Q ss_pred             EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ++++|+|  ++.+|++|+.||.|++|+..     ...+..+..|...|.+++|+|++ .+|++++.||.|++||+.++..
T Consensus       112 ~~~~~s~--~~~~l~~~~~dg~i~i~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          112 TCLAWSH--DGNSIVTGVENGELRLWNKT-----GALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETT-----SCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEE
T ss_pred             EEEEEcC--CCCEEEEEeCCCeEEEEeCC-----CCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcE
Confidence            9999999  99999999999999999943     67888899999999999999998 9999999999999999998876


Q ss_pred             EEeec-CCCc---------------eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          318 DLVYS-SEYA---------------VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       318 ~~~~~-~~~~---------------i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      ...+. +...               +.+++|++++  .+++++.+|.|++||+++++.+..+..|...|.+++|+|++ .
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~  260 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-K  260 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-T
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-C
Confidence            65554 3333               9999999875  79999999999999999999999999999999999999987 6


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      +|++++.||.|++||+++++    ....+..|...|.+++|+|++ +|++++.|+.|++||+.+++....+....   ..
T Consensus       261 ~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~  332 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGNGN----SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG---VP  332 (425)
T ss_dssp             EEEEEETTSCEEEECSSSBS----CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT---CC
T ss_pred             EEEEEcCCCEEEEEECCCCc----cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC---cc
Confidence            99999999999999999853    445555799999999999999 99999999999999999888776664322   22


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc--------------------cceeccCCcee-eeeeeEeecCCCCCE
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR--------------------SVATLQSPYIS-AIPCRFHAHPHQVGT  520 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~--------------------~~~~l~~~~~~-~~~~~~~~~p~~~~~  520 (536)
                      +  ..+.|+|++.+|++++.||.|++||+.+++                    .+..+..+... .+ ..+.|+| ++.+
T Consensus       333 i--~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~  408 (425)
T 1r5m_A          333 I--FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI-FDLSWNC-AGNK  408 (425)
T ss_dssp             E--EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCE-EEEEECT-TSSE
T ss_pred             E--EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCce-EEEEccC-CCce
Confidence            3  347899999999999999999999999888                    78888876553 33 5788999 5689


Q ss_pred             EEEEccCCeEEEEecC
Q 009380          521 LAGATGGGQVYVWTSD  536 (536)
Q Consensus       521 lasgs~Dg~v~iW~~d  536 (536)
                      |++++.||.|+||+++
T Consensus       409 l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          409 ISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEESSSCCEEEECC
T ss_pred             EEEEecCceEEEEeec
Confidence            9999999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.9e-40  Score=324.64  Aligned_cols=290  Identities=13%  Similarity=0.225  Sum_probs=243.2

Q ss_pred             cccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          229 IARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      .+.+|.+.|++++|+|  ++ .+|++|+.|++|++|++..... ....+..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus        12 ~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~   88 (319)
T 3frx_A           12 TLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKT   88 (319)
T ss_dssp             EECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             EEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCE
Confidence            3588999999999999  54 8999999999999999874221 123567889999999999999999 99999999999


Q ss_pred             EEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC-----C
Q 009380          307 IRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN-----P  380 (536)
Q Consensus       307 I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~-----~  380 (536)
                      |++||+.++.... +.+|...|.+++|+|++ .+|++|+.|++|++||++ ++.+..+.+|...|.++.|+|..     .
T Consensus        89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            9999999987654 55789999999999998 899999999999999996 55677888999999999999853     2


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR  460 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  460 (536)
                      .+|++++.|+.|++||+++.+    ....+.+|...|.+++|+|+|++|++++.|+.|+|||+.+.+.+..+....    
T Consensus       167 ~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----  238 (319)
T 3frx_A          167 VTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD----  238 (319)
T ss_dssp             CEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS----
T ss_pred             cEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----
Confidence            489999999999999998753    344566899999999999999999999999999999999988877775432    


Q ss_pred             eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc------eeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .  ...++|+|++.+|++++.+ .+++|++.....+..+..+.      .......++|+| ++.+|++|+.||.|+||+
T Consensus       239 ~--v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          239 E--VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             C--EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             c--EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEE
Confidence            2  3448899999999988755 59999998876665554321      111224689999 679999999999999999


Q ss_pred             c
Q 009380          535 S  535 (536)
Q Consensus       535 ~  535 (536)
                      +
T Consensus       315 ~  315 (319)
T 3frx_A          315 V  315 (319)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-40  Score=326.89  Aligned_cols=297  Identities=15%  Similarity=0.174  Sum_probs=251.3

Q ss_pred             ccccceecccccceeeeecCCCC-cccccccccccccccccccceEEecccccC------ccccccccCCceEEEEEEec
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLG-VGSCDLIKGVVKTEKIEVGSCVDIGSLTLK------PENIARIMPGRITQMKFLPC  245 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~------~~~~~~~~~~~I~~v~~~p~  245 (536)
                      +.+...+.+|...|.++.|++++ .+++          +++.|+.|++|++...      +...+++|...|.+++|+| 
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~----------s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-   75 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLL----------SASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-   75 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEE----------EEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEE----------EecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-
Confidence            45667899999999999999976 5666          4689999999997532      2334678999999999999 


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC
Q 009380          246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY  325 (536)
Q Consensus       246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~  325 (536)
                       ++.+|++|+.|++|+|||+.+    +..+..+.+|...|.+++|+|++ .+|++++.|++|++||++......+.+|..
T Consensus        76 -dg~~l~s~s~D~~v~~wd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~  149 (319)
T 3frx_A           76 -DGAYALSASWDKTLRLWDVAT----GETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHND  149 (319)
T ss_dssp             -TSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSS
T ss_pred             -CCCEEEEEeCCCEEEEEECCC----CCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCC
Confidence             999999999999999999997    67888999999999999999998 999999999999999999888888888999


Q ss_pred             ceeEEEecCCC-----CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          326 AVFSLSQQPNN-----VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       326 ~i~~l~~~~~~-----~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      .|.+++|.|..     ...+++++.|+.|++||+++++....+.+|...|.+++|+|++ .+|++|+.||.|++||+++.
T Consensus       150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             CEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTT
T ss_pred             cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC
Confidence            99999999853     2489999999999999999999888999999999999999987 79999999999999999985


Q ss_pred             CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC---CCceeeeeEEEEcCCCCEEE
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ---TGRWISSFRAIWGWDDSCVF  477 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~g~~l~  477 (536)
                           .......+...|.+++|+|++.+|++++.+ .+++|++........+.....   .........++|+|+|++|+
T Consensus       229 -----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  302 (319)
T 3frx_A          229 -----KAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLF  302 (319)
T ss_dssp             -----EEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEE
T ss_pred             -----cEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEE
Confidence                 334444566789999999999988887755 599999987655544432110   01111234588999999999


Q ss_pred             EEcCCCcEEEEcCCcc
Q 009380          478 IGNMTRTVEVISPAQR  493 (536)
Q Consensus       478 ~gs~dg~I~v~d~~~~  493 (536)
                      +|+.|+.|+|||+.++
T Consensus       303 sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          303 AGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEETTSCEEEEEEEEC
T ss_pred             EeecCceEEEEEEeec
Confidence            9999999999998764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.4e-40  Score=321.02  Aligned_cols=293  Identities=16%  Similarity=0.179  Sum_probs=246.7

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEE
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      +.++.++.+|.+.|.++.|+|++..++          +++.||.|+|||+.... ......|...|.+++|+|  ++++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~----------s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l   70 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVL----------TTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWI   70 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEE----------EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEE----------EEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEE
Confidence            456778999999999999999999988          45789999999985432 334567899999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eE-EEeecCCCceeE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VF-DLVYSSEYAVFS  329 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~-~~~~~~~~~i~~  329 (536)
                      ++|+.|+.|++||+.+    +..+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++ .. ..+.+|...|.+
T Consensus        71 ~s~s~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~  145 (304)
T 2ynn_A           71 IVGSDDFRIRVFNYNT----GEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (304)
T ss_dssp             EEEETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred             EEECCCCEEEEEECCC----CcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence            9999999999999998    77888999999999999999998 99999999999999999876 33 345578999999


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecC-CCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPR-NPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~-~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      ++|+|.++.+|++|+.||+|++||++++.....+. .|...+..+.|+|. +..+|++|+.|++|++||+++++    ..
T Consensus       146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~  221 (304)
T 2ynn_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CV  221 (304)
T ss_dssp             EEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE----EE
T ss_pred             EEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc----cc
Confidence            99999666899999999999999999887766665 56688999999873 23699999999999999999853    45


Q ss_pred             ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC--EEEEEcCCCcE
Q 009380          408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS--CVFIGNMTRTV  485 (536)
Q Consensus       408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~l~~gs~dg~I  485 (536)
                      ..+.+|...|.+++|+|++.+|++++.||+|++||+.+++....+....   ..+  ..++|+|++.  ++++|+.|| +
T Consensus       222 ~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~asg~~~g-~  295 (304)
T 2ynn_A          222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL---ERS--WCIATHPTGRKNYIASGFDNG-F  295 (304)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS---SSE--EEEEECTTCGGGCEEEEETTE-E
T ss_pred             eeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC---ccE--EEEEECCCCCceEEEEecCCc-e
Confidence            5666899999999999999999999999999999999988877774322   122  3367788775  577776554 7


Q ss_pred             EEEcCCc
Q 009380          486 EVISPAQ  492 (536)
Q Consensus       486 ~v~d~~~  492 (536)
                      .+|++..
T Consensus       296 ~~~~~~~  302 (304)
T 2ynn_A          296 TVLSLGN  302 (304)
T ss_dssp             EEEECC-
T ss_pred             EEEEecc
Confidence            7777654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.6e-40  Score=330.22  Aligned_cols=297  Identities=12%  Similarity=0.123  Sum_probs=237.2

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-----ccccccCCceEEEEEEecCCccEEEEE
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-----NIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-----~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      ..|...|.++.|+|||++|++......++    .|+.+.+|+......     .....|...|++++|+|  ++.+ +++
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~----wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~--d~~~-l~~  111 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRT----WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS--EKGI-LVA  111 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSS----CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET--TTEE-EEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCcc----ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC--CCCE-EEE
Confidence            46899999999999999999775444443    368899998643221     12245788999999999  8754 567


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEec
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQ  333 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~  333 (536)
                      +.||+|+|||+.++...........+|...|.+++|+|++ .+|++|+.|+.|++||++++.....+ .|...|.+++|+
T Consensus       112 s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s  190 (357)
T 4g56_B          112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC  190 (357)
T ss_dssp             ETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            7899999999987432223334566899999999999999 99999999999999999998766554 688999999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      +++..++++++.||.|++||+++++.+..+.  .|...+.+++|+|++..+|++|+.|+.|++||+++++    ....+.
T Consensus       191 ~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~----~~~~~~  266 (357)
T 4g56_B          191 PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD----SAQTSA  266 (357)
T ss_dssp             TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----GCEEEC
T ss_pred             cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc----EeEEEe
Confidence            9987789999999999999999988766554  5677899999999888899999999999999999853    445566


Q ss_pred             cccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC-CCCEEEEEcCCCcEEEEc
Q 009380          412 SHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW-DDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~gs~dg~I~v~d  489 (536)
                      .|...|++++|+|++ ++|++++.|++|+|||+.+++....+.|..    .+.  .++|+| ++.+|++++.|+.|++|+
T Consensus       267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~----~V~--~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRD----FVT--GVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSS----CEE--EEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCC----CEE--EEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            899999999999987 679999999999999999887766654432    344  478998 799999999999999999


Q ss_pred             CCccc
Q 009380          490 PAQRR  494 (536)
Q Consensus       490 ~~~~~  494 (536)
                      +.+..
T Consensus       341 ~~~~~  345 (357)
T 4g56_B          341 LPSEG  345 (357)
T ss_dssp             CC---
T ss_pred             CCCCC
Confidence            97643

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-40  Score=329.05  Aligned_cols=295  Identities=17%  Similarity=0.240  Sum_probs=232.6

Q ss_pred             ccccCC-ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCc-eEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          230 ARIMPG-RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNG-IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       230 ~~~~~~-~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~-~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      +..|.+ .|++++|+|  ++.+|++|+.||+|+||++....  ... .....+|...|.+++|+|++ ++|++|+.|++|
T Consensus        11 ~~~h~~~~v~~l~~sp--~g~~las~~~D~~i~iw~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v   85 (345)
T 3fm0_A           11 VPAHPDSRCWFLAWNP--AGTLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATT   85 (345)
T ss_dssp             ECCSTTSCEEEEEECT--TSSCEEEEETTSCEEEEEEETTE--EEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             ecCCCCCcEEEEEECC--CCCEEEEEcCCCeEEEEEcCCCc--ceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcE
Confidence            467877 999999999  99999999999999999998621  011 22346899999999999998 999999999999


Q ss_pred             EEEECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeEeccCCCeEEEEEecCCCC
Q 009380          308 RLMDAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       308 ~vwd~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      ++||+..+..   ..+.+|...|.+++|+|++ ++|++|+.|+.|++||++++..   +..+..|...|.+++|+|++ .
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~  163 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-E  163 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS-S
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC-C
Confidence            9999987642   3455789999999999998 8999999999999999987643   56677899999999999987 6


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE----------
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM----------  451 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~----------  451 (536)
                      +|++|+.|+.|++||++...  ......+.+|...|++++|+|+|++|++++.|++|+|||.........          
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~  241 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW  241 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred             EEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence            99999999999999988642  012234558999999999999999999999999999999643221110          


Q ss_pred             --E-eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc----c----eeccCCceeeeeeeEeecCCCCCE
Q 009380          452 --I-HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS----V----ATLQSPYISAIPCRFHAHPHQVGT  520 (536)
Q Consensus       452 --~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~----~----~~l~~~~~~~~~~~~~~~p~~~~~  520 (536)
                        + ........  .+..++|++++..|++++.|+.|++|+......    .    ......|...+ ..++|+|....+
T Consensus       242 ~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~~p~~~~~  318 (345)
T 3fm0_A          242 KCICTLSGFHSR--TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV-NCVAWNPKEPGL  318 (345)
T ss_dssp             EEEEEECSSCSS--CEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE-EEEEECSSSTTE
T ss_pred             ceeEEecCCCCC--cEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE-eEeEEeCCCceE
Confidence              0 00111122  234578999999999999999999999875431    1    11112233344 468999965569


Q ss_pred             EEEEccCCeEEEEecC
Q 009380          521 LAGATGGGQVYVWTSD  536 (536)
Q Consensus       521 lasgs~Dg~v~iW~~d  536 (536)
                      ||+|+.||.|+||+++
T Consensus       319 laS~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          319 LASCSDDGEVAFWKYQ  334 (345)
T ss_dssp             EEEEETTSCEEEEEEC
T ss_pred             EEEcCCCCcEEEEEec
Confidence            9999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5e-40  Score=326.65  Aligned_cols=307  Identities=12%  Similarity=0.091  Sum_probs=243.5

Q ss_pred             cccceeccccc-ceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCc
Q 009380          174 NLGFVIKDEFN-GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDV  248 (536)
Q Consensus       174 ~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~  248 (536)
                      .+...+.+|.+ .|.++.|+|+|++++          +++.|+.|+||++....    .....+|.+.|.+++|+|  ++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~la----------s~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~g   73 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLA----------SCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP--CG   73 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEE----------EEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT--TS
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEE----------EEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC--CC
Confidence            44567889988 999999999999999          45889999999985442    123367999999999999  99


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEeecCC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYSSE  324 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~~~~~  324 (536)
                      .+|++|+.|++|+||++....  ...+..+.+|...|.+++|+|++ ++|++|+.|++|++||+.++.    ...+..|.
T Consensus        74 ~~l~s~s~D~~v~iw~~~~~~--~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~  150 (345)
T 3fm0_A           74 NYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT  150 (345)
T ss_dssp             SEEEEEETTSCEEEEEECCC---EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred             CEEEEEECCCcEEEEEccCCC--eEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence            999999999999999987632  24677889999999999999998 999999999999999998753    23345688


Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCc--cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK--SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~--~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                      ..|.+++|+|++ .+|++|+.|+.|++||+++++  +...+.+|...|.+++|+|++ .+|++|+.|++|+|||......
T Consensus       151 ~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~  228 (345)
T 3fm0_A          151 QDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGN  228 (345)
T ss_dssp             SCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTC
T ss_pred             CCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCC
Confidence            999999999998 799999999999999998875  356788999999999999987 7999999999999999754321


Q ss_pred             CCCC-----------cceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc----ceEEe-c-cCCCCceeee
Q 009380          403 DKPE-----------PMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN----TSMIH-H-NNQTGRWISS  464 (536)
Q Consensus       403 ~~~~-----------~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~----~~~~~-~-~~~~~~~~~~  464 (536)
                      ....           ..... .|...|.+++|+|++..|++++.|+.|++|+......    ...+. + .......  +
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~--V  306 (345)
T 3fm0_A          229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD--V  306 (345)
T ss_dssp             TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC--E
T ss_pred             CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc--E
Confidence            1100           11122 2888999999999999999999999999999865432    11121 1 1122223  3


Q ss_pred             eEEEEcCCC-CEEEEEcCCCcEEEEcCCccccceec
Q 009380          465 FRAIWGWDD-SCVFIGNMTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       465 ~~~~~s~~g-~~l~~gs~dg~I~v~d~~~~~~~~~l  499 (536)
                      .+++|+|++ .+|++|+.||.|++|++.+++.+..+
T Consensus       307 ~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          307 NCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             eEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            448899987 48999999999999999988766544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-39  Score=322.51  Aligned_cols=297  Identities=14%  Similarity=0.153  Sum_probs=243.5

Q ss_pred             ccccceecccccceeeeec-----CC-CCcccccccccccccccccccceEEecccccC--------ccccccccCCceE
Q 009380          173 ENLGFVIKDEFNGFKTCKD-----EG-LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK--------PENIARIMPGRIT  238 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~-----s~-~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~--------~~~~~~~~~~~I~  238 (536)
                      +.....+.+|.+.|.++.|     ++ ++.+++          +++.|+.|+||++...        +...+.+|...|+
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~----------sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~   80 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLI----------SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS   80 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEE----------EEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCCEEE----------EEcCCCEEEEEECCcCCcccccccccchhccCCCceE
Confidence            3456678999999999998     66 788777          5688999999998532        2234578999999


Q ss_pred             EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE
Q 009380          239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD  318 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~  318 (536)
                      +++|+|  ++.+|++|+.|++|++||+.+    +..+..+.+|...|.+++|+|++ .+|++++.|++|++||+......
T Consensus        81 ~~~~~~--~~~~l~s~s~D~~v~lwd~~~----~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~  153 (343)
T 2xzm_R           81 DLALSQ--ENCFAISSSWDKTLRLWDLRT----GTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKF  153 (343)
T ss_dssp             EEEECS--STTEEEEEETTSEEEEEETTS----SCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEE
T ss_pred             EEEECC--CCCEEEEEcCCCcEEEEECCC----CcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCcee
Confidence            999999  999999999999999999997    67888999999999999999998 99999999999999999865444


Q ss_pred             Eee---cCCCceeEEEecCCCC---------CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          319 LVY---SSEYAVFSLSQQPNNV---------NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       319 ~~~---~~~~~i~~l~~~~~~~---------~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ...   .|...|.+++|+|++.         .+|++++.||.|++|| ...+....+.+|...|.+++|+|++ .+|++|
T Consensus       154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~sg  231 (343)
T 2xzm_R          154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNG-KYIATG  231 (343)
T ss_dssp             ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCC-CEEEEE
Confidence            333   5778999999999862         5899999999999999 4556677888999999999999987 799999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce--EEeccC------CC
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS--MIHHNN------QT  458 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~--~~~~~~------~~  458 (536)
                      +.||.|++||++...    .......+...|.+++|+|++.++++ +.|+.|++||+.+.+...  .+....      ..
T Consensus       232 s~dg~v~iwd~~~~~----~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~  306 (343)
T 2xzm_R          232 GKDKKLLIWDILNLT----YPQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK  306 (343)
T ss_dssp             ETTCEEEEEESSCCS----SCSEEEECSSCEEEEEECSSSCEEEE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred             cCCCeEEEEECCCCc----ccceeecCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence            999999999996532    33444556678999999999987765 558889999998776554  222100      00


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      +....+..++|+|+|++|++|+.||.|++|++.++
T Consensus       307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            11122345889999999999999999999998765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-40  Score=334.90  Aligned_cols=304  Identities=18%  Similarity=0.159  Sum_probs=251.8

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      ......+.+|...|.++.|+|+++.++          +++.||.|+|||+... .....+.|...|.+++|+|  ++.+|
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~----------s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l  123 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIV----------SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--NGQSV  123 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEE----------EEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT--TSSEE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEE----------EEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC--CCCEE
Confidence            344567899999999999999999988          4588999999997543 3345678999999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCC---CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee------c
Q 009380          252 VAGSKLGNITFWNLDSQQD---EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY------S  322 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~---~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~------~  322 (536)
                      ++|+.|+.|++|++.....   .......+.+|.+.|.++.|+|++...|++|+.|++|++||+.++.....+      +
T Consensus       124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~  203 (380)
T 3iz6_a          124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG  203 (380)
T ss_dssp             EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS
T ss_pred             EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC
Confidence            9999999999999975321   123456788999999999999987578999999999999999998766544      5


Q ss_pred             CCCceeEEEecCCCCCEEEEEECCCeEEEEECC-CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380          323 SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR-SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA  401 (536)
Q Consensus       323 ~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~-~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~  401 (536)
                      |...|.+++|++.+.++|++|+.||.|++||++ .+..+..+.+|...|++++|+|++ .+|++|+.||+|++||++++.
T Consensus       204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE
T ss_pred             CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc
Confidence            778999999988555899999999999999998 457788899999999999999987 799999999999999999853


Q ss_pred             CCCCCcceeec-------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCC
Q 009380          402 TDKPEPMKVLS-------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDD  473 (536)
Q Consensus       402 ~~~~~~~~~~~-------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g  473 (536)
                          ....+..       +...|++++|+|+|.+|++|+.||.|++||+..++....+... ......+.  +++|+|+|
T Consensus       283 ----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~--~l~~s~dg  356 (380)
T 3iz6_a          283 ----QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRIS--CLGLSSDG  356 (380)
T ss_dssp             ----EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCC--EEEECSSS
T ss_pred             ----EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceE--EEEECCCC
Confidence                1111111       2335899999999999999999999999999888776665321 12222333  47899999


Q ss_pred             CEEEEEcCCCcEEEEcCCcccc
Q 009380          474 SCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       474 ~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      .+|++|+.|+.|+||++.+.+.
T Consensus       357 ~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          357 SALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             SEEEEECTTSCEEEEECCSSSS
T ss_pred             CEEEEeeCCCCEEEEecCCCcc
Confidence            9999999999999999987643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.5e-39  Score=317.91  Aligned_cols=322  Identities=11%  Similarity=0.118  Sum_probs=261.8

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      |...|.++.++|||+.++...          .++.+.+|...... ......|.+.|++++|+|  ++.+|++++ ||.|
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i   74 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPF----------PPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCV   74 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCC----------CTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEE
T ss_pred             cCCceeEEEECCCCCEEEeec----------CCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeE
Confidence            457889999999999998542          22233444432221 222346899999999999  999999999 9999


Q ss_pred             EEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe---EEEeecCCCceeEEEecCC
Q 009380          261 TFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV---FDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~  335 (536)
                      ++|++..... ...+..+.  .|...|.+++|+|++ ++|++++.||.|++||+.++.   ......|...|.+++|+|+
T Consensus        75 ~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~  152 (337)
T 1gxr_A           75 KVWDISHPGN-KSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD  152 (337)
T ss_dssp             EEEETTSTTC-CSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred             EEEECCCCCc-eeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence            9999987432 22333333  799999999999998 999999999999999999875   2344567889999999998


Q ss_pred             CCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR  415 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~  415 (536)
                      + +++++++.||.|++||+++++.+..+..|...|.+++|+|++ .+|++++.||.|++||++++     .......+..
T Consensus       153 ~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~~~  225 (337)
T 1gxr_A          153 S-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREG-----RQLQQHDFTS  225 (337)
T ss_dssp             S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTT-----EEEEEEECSS
T ss_pred             C-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCC-----ceEeeecCCC
Confidence            8 899999999999999999999999999999999999999977 79999999999999999985     3445557889


Q ss_pred             ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      .+.+++|+|++++|++++.|+.|++||+.+.+......|    ...+.  .+.|+|++++|++++.|+.|++|++.+++.
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~v~--~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~  299 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH----ESCVL--SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS  299 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC----SSCEE--EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCC----cccee--EEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence            999999999999999999999999999988765432222    22233  477999999999999999999999999887


Q ss_pred             ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          496 VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       496 ~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +.... +. ..+ ..+.|+| ++.+|++++.||.|++|++
T Consensus       300 ~~~~~-~~-~~v-~~~~~s~-~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          300 IFQSK-ES-SSV-LSCDISV-DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEE-CS-SCE-EEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred             EEEec-CC-CcE-EEEEECC-CCCEEEEecCCCeEEEEEE
Confidence            75443 22 233 4678888 5699999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.7e-39  Score=323.95  Aligned_cols=292  Identities=18%  Similarity=0.173  Sum_probs=247.2

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEE
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      .....+.+|.+.|.++.|+|+++.++          +++.||.|++||.... .......|...|.+++|+|  ++.+|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~----------s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp--~g~~la  122 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIV----------SSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP--SGCAIA  122 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEE----------EEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT--TSSEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEE----------EEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC--CCCEEE
Confidence            34567899999999999999999888          5589999999997433 2334566788999999999  999999


Q ss_pred             EEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeE
Q 009380          253 AGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFS  329 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~  329 (536)
                      +|+.|+.+++|++.....  .......+.+|...|.++.|+|++ ..|++++.|++|++||++++.... +.+|...|.+
T Consensus       123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~  201 (354)
T 2pbi_B          123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLC  201 (354)
T ss_dssp             EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence            999999999999875321  123556778899999999999998 999999999999999999987654 4468899999


Q ss_pred             EEecCCC-CCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380          330 LSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM  408 (536)
Q Consensus       330 l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~  408 (536)
                      ++|+|+. +++|++|+.||.|++||+++++++..+..|...|++++|+|++ .+|++|+.|++|++||++...     ..
T Consensus       202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~-----~~  275 (354)
T 2pbi_B          202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR-----EV  275 (354)
T ss_dssp             EEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE-----EE
T ss_pred             EEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc-----EE
Confidence            9998853 3799999999999999999999999999999999999999987 799999999999999998742     22


Q ss_pred             eee---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          409 KVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       409 ~~~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      ...   .+...+.+++|+|+|.+|++++.|+.|++||+.+++.+..+..+   ...+.  .++|+|+|.+|++|+.|+.|
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h---~~~v~--~l~~spdg~~l~sgs~D~~v  350 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH---ENRVS--TLRVSPDGTAFCSGSWDHTL  350 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC---SSCEE--EEEECTTSSCEEEEETTSEE
T ss_pred             EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC---CCcEE--EEEECCCCCEEEEEcCCCCE
Confidence            222   23457899999999999999999999999999888877665321   22333  47899999999999999999


Q ss_pred             EEEc
Q 009380          486 EVIS  489 (536)
Q Consensus       486 ~v~d  489 (536)
                      +||+
T Consensus       351 ~vW~  354 (354)
T 2pbi_B          351 RVWA  354 (354)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9996

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=6.9e-39  Score=324.27  Aligned_cols=287  Identities=19%  Similarity=0.271  Sum_probs=231.7

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC------------------CCEEEEEEecC
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL------------------GPISGIVTQQY  293 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~------------------~~V~~l~~~~~  293 (536)
                      .|.+.|++++|+|  +|++|++|+ ++.++||++.+    +..+..+..|.                  ..|.+++|+|+
T Consensus        62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~----g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d  134 (393)
T 1erj_A           62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSD----GSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD  134 (393)
T ss_dssp             ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTT----CCEEEEECC-----------------CCCCBEEEEEECTT
T ss_pred             CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecC----CCEEEEecCccccccccccccccccCCCceeEEEEEECCC
Confidence            5899999999999  999999987 68999999987    55555555443                  24999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEE
Q 009380          294 CLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINT  372 (536)
Q Consensus       294 ~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~  372 (536)
                      + .+|++|+.|+.|++||+.++.... +.+|...|.+++|+|++ .+|++++.|++|++||+++++....+. +...+.+
T Consensus       135 g-~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~  211 (393)
T 1erj_A          135 G-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTT  211 (393)
T ss_dssp             S-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEE
T ss_pred             C-CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEE
Confidence            9 999999999999999999887654 45688999999999998 899999999999999999998877776 6778999


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-------ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-------~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      ++|+|.++.+|++|+.||.|++||++++.    ....+       .+|...|.+++|+|+|.+|++++.|+.|++||+++
T Consensus       212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          212 VAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence            99999545899999999999999998853    12122       46899999999999999999999999999999976


Q ss_pred             CCcceEEe---------ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380          446 FENTSMIH---------HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPH  516 (536)
Q Consensus       446 ~~~~~~~~---------~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~  516 (536)
                      ........         ........  +..++|++++.+|++|+.|+.|++||..+++.+..+.+|...+.  .++|+|.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~--~v~~~~~  363 (393)
T 1erj_A          288 ANNKSDSKTPNSGTCEVTYIGHKDF--VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI--SVAVANG  363 (393)
T ss_dssp             -------------CEEEEEECCSSC--EEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEECSS
T ss_pred             CCCcccccCCCCCcceEEEecccCc--EEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE--EEEecCC
Confidence            43221110         00011112  34478999999999999999999999999999999988776655  3455441


Q ss_pred             -----CCCEEEEEccCCeEEEEecC
Q 009380          517 -----QVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       517 -----~~~~lasgs~Dg~v~iW~~d  536 (536)
                           ++.+|++|+.||.|+||+++
T Consensus       364 ~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          364 SSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             CTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcCCCCCEEEEECCCCcEEECccc
Confidence                 46899999999999999863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.8e-39  Score=324.78  Aligned_cols=295  Identities=25%  Similarity=0.396  Sum_probs=243.0

Q ss_pred             cccccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          229 IARIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ....|.+.|++++|+|  ++ .+|++|+.||.|+|||+.+    ......+.  +|...|.+++|+|++..+|++++.|+
T Consensus        68 ~~~~h~~~v~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHP--THPTTVAVGSKGGDIILWDYDV----QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             EECCCSSCEEEEEECS--SCTTEEEEEEBTSCEEEEETTS----TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             eccCCCCCEEEEEECC--CCCCEEEEEcCCCeEEEEeCCC----cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            4578999999999999  88 8999999999999999987    44444444  69999999999994338999999999


Q ss_pred             eEEEEECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          306 LIRLMDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      .|++||+.+........+   ...|.+++|+|++ .+|++|+.||.|++||+ +++.+..+..|...|.+++|+|++..+
T Consensus       142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~  219 (383)
T 3ei3_B          142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL  219 (383)
T ss_dssp             EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred             EEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence            999999998766655544   4789999999998 89999999999999999 577888899999999999999988659


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEe-ccCCCCc
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIH-HNNQTGR  460 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~  460 (536)
                      |++++.|+.|++||+++.+.. ........|...|.+++|+| ++.+|++++.|+.|++||+++++....+. +......
T Consensus       220 l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  298 (383)
T 3ei3_B          220 MATSSVDATVKLWDLRNIKDK-NSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ  298 (383)
T ss_dssp             EEEEETTSEEEEEEGGGCCST-TCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT
T ss_pred             EEEEeCCCEEEEEeCCCCCcc-cceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc
Confidence            999999999999999985422 23445558999999999999 99999999999999999999888776664 2211111


Q ss_pred             eee-----------eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCe
Q 009380          461 WIS-----------SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ  529 (536)
Q Consensus       461 ~~~-----------~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~  529 (536)
                      ...           .+.+.|+|++++  +|+.|+.|++||+.+++.+..+.+++...+...++|+| ++.+|++|+ ||.
T Consensus       299 ~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~  374 (383)
T 3ei3_B          299 HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFN  374 (383)
T ss_dssp             TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTE
T ss_pred             cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-CCc
Confidence            111           122455666665  67789999999999999999998765444445678999 569999997 999


Q ss_pred             EEEEecC
Q 009380          530 VYVWTSD  536 (536)
Q Consensus       530 v~iW~~d  536 (536)
                      |+|||++
T Consensus       375 i~iw~~~  381 (383)
T 3ei3_B          375 ILIWNRE  381 (383)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            9999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=319.54  Aligned_cols=294  Identities=16%  Similarity=0.205  Sum_probs=221.8

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-cc-CCCCEEEEEEecCCCCEEEEEECCC
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-RT-HLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~-h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ..+++|.+.|++++|+|  +  +|++|+.||.|++|++....  ......+ .+ |...|.+++|+|++ .+|++++.|+
T Consensus         8 ~~~~~h~~~v~~~~~s~--~--~las~~~D~~i~lw~~~~~~--~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~   80 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQ--G--ILATGSTDRKIKLVSVKYDD--FTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDS   80 (330)
T ss_dssp             EEEECCSSCEEEEEEET--T--EEEEEESSSCEEEEECSSSC--CEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTS
T ss_pred             eeeccCCCceeeeccCC--C--EEEEEcCCCEEEEEEecCCC--eEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCC
Confidence            34578999999999998  5  99999999999999998632  2334444 44 99999999999998 9999999999


Q ss_pred             eEEEEECCCC-------e-EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC----ccceeEeccCCCeEEE
Q 009380          306 LIRLMDAEKE-------V-FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR----KSATEWLLHEARINTI  373 (536)
Q Consensus       306 ~I~vwd~~~~-------~-~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~----~~~~~~~~h~~~i~~i  373 (536)
                      +|++||+...       . ...+.+|...|.+++|+|++ ++|++|+.|++|++||++..    +++..+.+|...|.++
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v  159 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV  159 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEE
Confidence            9999998532       2 23455789999999999998 89999999999999999532    3466788999999999


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCcc--
Q 009380          374 DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS--GSSLATTSFDDTIGIWSGVNFENT--  449 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~--g~~l~t~s~dg~I~iwd~~~~~~~--  449 (536)
                      +|+|++ .+|++|+.|++|++||++...  ......+.+|...|.+++|+|+  +.+|++++.|++|++||+......  
T Consensus       160 ~~~p~~-~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~  236 (330)
T 2hes_X          160 IWHPSE-ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EECSSS-SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred             EECCCC-CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence            999987 799999999999999987631  1123445589999999999998  678999999999999998654211  


Q ss_pred             ---eEEe-ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc--cceec-cCCceeeeeeeEeecCC-CCCEE
Q 009380          450 ---SMIH-HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR--SVATL-QSPYISAIPCRFHAHPH-QVGTL  521 (536)
Q Consensus       450 ---~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~--~~~~l-~~~~~~~~~~~~~~~p~-~~~~l  521 (536)
                         .... ........+  ..++|++++ +|++++.|+.|++|+..+++  .+... .+|....+ ..++|+|. ++.+|
T Consensus       237 ~~~~~~~~~~~~h~~~v--~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v-~~v~~~~~~~~~~l  312 (330)
T 2hes_X          237 QEWVCEAILPDVHKRQV--YNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEI-NVVKWLELNGKTIL  312 (330)
T ss_dssp             EEEEEEEECCSCCSSCE--EEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCE-EEEEEC-----CCE
T ss_pred             ceeEEeeecccccccce--EEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceE-EEEEEecCCCceEE
Confidence               1111 111122233  347788665 89999999999999988763  33333 33433133 46788885 56899


Q ss_pred             EEEccCCeEEEEecC
Q 009380          522 AGATGGGQVYVWTSD  536 (536)
Q Consensus       522 asgs~Dg~v~iW~~d  536 (536)
                      ++|+.||.|+||+++
T Consensus       313 as~s~Dg~v~~W~~~  327 (330)
T 2hes_X          313 ATGGDDGIVNFWSLE  327 (330)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEecCCCcEEEEEec
Confidence            999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-38  Score=316.24  Aligned_cols=292  Identities=15%  Similarity=0.212  Sum_probs=233.5

Q ss_pred             cccccccCCceEEEEE-----EecCCccEEEEEeCCCcEEEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEE
Q 009380          227 ENIARIMPGRITQMKF-----LPCSDVRMVVAGSKLGNITFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKI  298 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~-----~p~~~~~~l~tg~~dg~v~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l  298 (536)
                      ...+++|.+.|++++|     ++. ++.+|++|+.|++|+|||+......   ......+.+|...|.+++|+|++ .+|
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~-d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l   91 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENE-DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFA   91 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTC-CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEE
T ss_pred             eeeeccchhhhhheeeEEEeecCC-CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEE
Confidence            3456899999999999     432 7889999999999999999753211   23456788999999999999998 999


Q ss_pred             EEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCCCeEEEE
Q 009380          299 FTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTID  374 (536)
Q Consensus       299 ~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~  374 (536)
                      ++++.|++|++||++++... .+.+|...|.+++|+|++ ++|++++.|+.|++||+... ......   .|...|.+++
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeee
Confidence            99999999999999988665 455789999999999998 89999999999999999843 322222   6889999999


Q ss_pred             EecCCC---------CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          375 FNPRNP---------NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       375 ~~p~~~---------~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      |+|++.         .+|++++.||.|++||...     .....+.+|...|.+++|+|+|++|++++.|+.|++||+..
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~  244 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN  244 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            999762         5899999999999999543     23445568999999999999999999999999999999954


Q ss_pred             C-CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce--eccC----------CceeeeeeeEe
Q 009380          446 F-ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA--TLQS----------PYISAIPCRFH  512 (536)
Q Consensus       446 ~-~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~--~l~~----------~~~~~~~~~~~  512 (536)
                      . .....+.+.    ..+  ..++|+|++.+|++| .|+.|++|++.+++...  .+..          .|...+ ..++
T Consensus       245 ~~~~~~~~~~~----~~v--~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~  316 (343)
T 2xzm_R          245 LTYPQREFDAG----STI--NQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC-TSLA  316 (343)
T ss_dssp             CSSCSEEEECS----SCE--EEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE-EEEE
T ss_pred             CcccceeecCC----CcE--EEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce-EEEE
Confidence            3 344444332    123  347899999887765 57789999998876544  3331          122223 5789


Q ss_pred             ecCCCCCEEEEEccCCeEEEEecC
Q 009380          513 AHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       513 ~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      |+| ++.+|++|+.||.|++|+++
T Consensus       317 ~sp-~g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          317 WNA-LGKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             ECS-SSCCEEEEETTSEEEEEEEE
T ss_pred             ECC-CCCeEEEecCCceEEEEEEE
Confidence            999 57999999999999999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-38  Score=311.58  Aligned_cols=287  Identities=14%  Similarity=0.158  Sum_probs=251.5

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      .+.+|.+.|++++|+|  ++++|++|+.||.|++||+.+    ...+..+.+|...|.+++|+|++ ++|++++.||.|+
T Consensus        27 ~l~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~   99 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNK--EGDLLFSCSKDSSASVWYSLN----GERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIK   99 (369)
T ss_dssp             EEECCSSCEEEEEECT--TSCEEEEEESSSCEEEEETTT----CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEE
T ss_pred             EEEEeeceEEEEEEcC--CCCEEEEEeCCCEEEEEeCCC----chhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEE
Confidence            3578999999999999  999999999999999999987    77888999999999999999998 9999999999999


Q ss_pred             EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCcc-----------ceeEeccCC--Ce
Q 009380          309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKS-----------ATEWLLHEA--RI  370 (536)
Q Consensus       309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~-----------~~~~~~h~~--~i  370 (536)
                      +||+.++.....+.+...|.+++|+|++ .++++++.+     |.|.+||+..+..           +..+..|..  .+
T Consensus       100 iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (369)
T 3zwl_B          100 LWDVSNGQCVATWKSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA  178 (369)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred             EEECCCCcEEEEeecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence            9999999888888899999999999998 899999998     9999999987643           344455665  89


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce
Q 009380          371 NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS  450 (536)
Q Consensus       371 ~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~  450 (536)
                      .+++|+|++ .+|++++.||.|++||+++..   .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++...
T Consensus       179 ~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          179 TVAGWSTKG-KYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK  254 (369)
T ss_dssp             EEEEECGGG-CEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             eEEEEcCCC-CEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence            999999977 699999999999999998731   2344555799999999999999999999999999999999988887


Q ss_pred             EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC--------------cEEEEcCCccccceeccCCceeeeeeeEeecCC
Q 009380          451 MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR--------------TVEVISPAQRRSVATLQSPYISAIPCRFHAHPH  516 (536)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg--------------~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~  516 (536)
                      .+.+..    .+.  .+.|+|++.++++++.++              .|++||..+++.+..+.+|...+  ..++|+| 
T Consensus       255 ~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v--~~~~~s~-  325 (369)
T 3zwl_B          255 KYETDC----PLN--TAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL--NTVAISP-  325 (369)
T ss_dssp             EEECSS----CEE--EEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCE--EEEEECT-
T ss_pred             eecCCC----Cce--eEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcE--EEEEECC-
Confidence            776322    233  377999999999999888              89999999999999888766544  3688999 


Q ss_pred             CCCEEEEEccCCeEEEEecC
Q 009380          517 QVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       517 ~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++.+|++++.||.|+||+++
T Consensus       326 ~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          326 QGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             TSSEEEEEETTSEEEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEECc
Confidence            67999999999999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-38  Score=314.48  Aligned_cols=300  Identities=14%  Similarity=0.135  Sum_probs=227.8

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc---ccc-cc-cCCceEEEEEEecCCc
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE---NIA-RI-MPGRITQMKFLPCSDV  248 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~---~~~-~~-~~~~I~~v~~~p~~~~  248 (536)
                      ++...+.+|.+.|.++.|+++  +++          +++.|+.|+||++.....   ... .. |.+.|++++|+|  ++
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~la----------s~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~   70 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILA----------TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP--HT   70 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEE----------EEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT--TS
T ss_pred             ccceeeccCCCceeeeccCCC--EEE----------EEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC--CC
Confidence            345678999999999999987  555          458899999999865321   222 33 899999999999  99


Q ss_pred             cEEEEEeCCCcEEEEECCCCC---CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eE-EEe
Q 009380          249 RMVVAGSKLGNITFWNLDSQQ---DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VF-DLV  320 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~---~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~-~~~  320 (536)
                      .+|++|+.|++|+||++....   .....+..+.+|...|.+++|+|++ .+|++|+.|++|++||+...    .. ..+
T Consensus        71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~  149 (330)
T 2hes_X           71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVL  149 (330)
T ss_dssp             SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEE
T ss_pred             CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEe
Confidence            999999999999999986421   1134567789999999999999998 99999999999999999532    22 345


Q ss_pred             ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC--ccceeEeccCCCeEEEEEecCC-CCEEEEEeCCCcEEEEeC
Q 009380          321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR--KSATEWLLHEARINTIDFNPRN-PNIMATSSTDGTACIWDL  397 (536)
Q Consensus       321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~--~~~~~~~~h~~~i~~i~~~p~~-~~~l~s~s~dg~i~iwdl  397 (536)
                      ..|...|.+++|+|++ .+|++|+.|++|++||+.++  +++..+.+|...|.+++|+|++ ..+|++|+.|++|++||+
T Consensus       150 ~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~  228 (330)
T 2hes_X          150 QEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY  228 (330)
T ss_dssp             CCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred             ccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence            5788999999999998 89999999999999999876  5678888999999999999973 368999999999999999


Q ss_pred             CCCCCCCC---Ccc-eeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec-cCCCCceeeeeEEEEcC
Q 009380          398 RSMATDKP---EPM-KVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH-NNQTGRWISSFRAIWGW  471 (536)
Q Consensus       398 ~~~~~~~~---~~~-~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~  471 (536)
                      +.......   ... .+.. |...|.+++|++++ +|++++.||.|+|||..+++....... .......+..  ++|+|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~--v~~~~  305 (330)
T 2hes_X          229 MGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV--VKWLE  305 (330)
T ss_dssp             EEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE--EEEC-
T ss_pred             cCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEE--EEEec
Confidence            76421110   111 1223 88999999999765 799999999999999876532111111 1111113333  67898


Q ss_pred             --CCCEEEEEcCCCcEEEEcCCc
Q 009380          472 --DDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       472 --~g~~l~~gs~dg~I~v~d~~~  492 (536)
                        ++.+|++|+.||.|+||++..
T Consensus       306 ~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          306 LNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             ----CCEEEEETTSEEEEEEC--
T ss_pred             CCCceEEEEecCCCcEEEEEecc
Confidence              688999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.1e-38  Score=316.85  Aligned_cols=289  Identities=14%  Similarity=0.146  Sum_probs=237.6

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccc------------------cCCceEEEE
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARI------------------MPGRITQMK  241 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~------------------~~~~I~~v~  241 (536)
                      +|...|.++.|+|||++++..           .++.+.+|++...... .+..                  +...|.+++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g-----------~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~  130 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATG-----------CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC  130 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEE-----------CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEE-----------cCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE
Confidence            699999999999999999854           2456777876432211 1111                  122499999


Q ss_pred             EEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee
Q 009380          242 FLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY  321 (536)
Q Consensus       242 ~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~  321 (536)
                      |+|  ++++|++|+.||.|+|||+.+    ...+..+.+|...|.+++|+|++ .+|++++.|++|++||+.++.....+
T Consensus       131 ~s~--dg~~l~s~~~d~~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          131 FSP--DGKFLATGAEDRLIRIWDIEN----RKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             ECT--TSSEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ECC--CCCEEEEEcCCCeEEEEECCC----CcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEE
Confidence            999  999999999999999999987    67788899999999999999998 99999999999999999999888888


Q ss_pred             cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-------eccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380          322 SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-------LLHEARINTIDFNPRNPNIMATSSTDGTACI  394 (536)
Q Consensus       322 ~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i  394 (536)
                      .+...+.+++|+|.++.+|++|+.||.|++||++++..+..+       .+|...|.+++|+|++ .+|++|+.||.|++
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKL  282 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEE
Confidence            888899999999944489999999999999999998877666       5789999999999987 79999999999999


Q ss_pred             EeCCCCCCC--------CCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          395 WDLRSMATD--------KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       395 wdl~~~~~~--------~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      ||++.....        ........+|...|.+++|+|++.+|++++.|+.|++||+.+++.+..+..+.   ..+..  
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~---~~v~~--  357 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR---NSVIS--  357 (393)
T ss_dssp             EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS---SCEEE--
T ss_pred             EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC---CCEEE--
Confidence            999874321        11223455899999999999999999999999999999999988877764322   12333  


Q ss_pred             EEEc------CCCCEEEEEcCCCcEEEEcCCcc
Q 009380          467 AIWG------WDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       467 ~~~s------~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ++|+      |++.+|++|+.|+.|+||++...
T Consensus       358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            4454      47889999999999999997653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.2e-39  Score=333.41  Aligned_cols=342  Identities=11%  Similarity=0.007  Sum_probs=242.2

Q ss_pred             cccceeeeecCCCC---------ccccccccccc---------ccccccccceEEecccccCccc-----cccccCCceE
Q 009380          182 EFNGFKTCKDEGLG---------VGSCDLIKGVV---------KTEKIEVGSCVDIGSLTLKPEN-----IARIMPGRIT  238 (536)
Q Consensus       182 ~~~~v~~~~~s~~~---------~~l~~~~~~~~---------~~~~~~~dg~v~lw~~~~~~~~-----~~~~~~~~I~  238 (536)
                      +...|.++.|+|++         .+++.......         .+.+++.|+.|+||++......     .+..|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46788899998887         66765432211         1356789999999998554321     2345688999


Q ss_pred             EEEEEec----CCccEEEEEeCCCcEEEEECCCCCCC-------CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          239 QMKFLPC----SDVRMVVAGSKLGNITFWNLDSQQDE-------DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       239 ~v~~~p~----~~~~~l~tg~~dg~v~iwd~~~~~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      +|+|+|.    .++.+||+|+.||+|+|||+......       ......+.+|...|++++|+++  ..|++|+.||+|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV  289 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFV  289 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEE
Confidence            9999993    12679999999999999999864211       1234578899999999999985  589999999999


Q ss_pred             EEEECCCCe-E-EEeecCCCceeEE--EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC--CeEEEEEecCCCC
Q 009380          308 RLMDAEKEV-F-DLVYSSEYAVFSL--SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPN  381 (536)
Q Consensus       308 ~vwd~~~~~-~-~~~~~~~~~i~~l--~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~--~i~~i~~~p~~~~  381 (536)
                      ++||++++. . ..+..|...|.++  +|++++.++|++|+.||+|++||+++++++..+.+|..  .|.+++|+|++ .
T Consensus       290 ~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~-~  368 (524)
T 2j04_B          290 AEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI-Y  368 (524)
T ss_dssp             EEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT-T
T ss_pred             EEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc-C
Confidence            999998763 2 3456789999999  46666447999999999999999999888888877764  58899999987 6


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      .|++++.|++|++||++++.    ....+.+|...|++++|+|+|++|++|+.|++|++||+... ..............
T Consensus       369 ~l~s~~~d~tv~lwd~~~~~----~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~  443 (524)
T 2j04_B          369 SYIYSDGASSLRAVPSRAAF----AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKS  443 (524)
T ss_dssp             EEEEECSSSEEEEEETTCTT----CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCC
T ss_pred             eEEEeCCCCcEEEEECcccc----cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceee
Confidence            89999999999999999853    34556789999999999999999999999999999998643 22211100000011


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCC--CCEEEEEccCCeEEEEecC
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQ--VGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~--~~~lasgs~Dg~v~iW~~d  536 (536)
                      .....++|+|++..+.. ..  .+.+|+.. ++..+..+.+|...+  ..++|+|..  +.+||+|+.||.|+||+++
T Consensus       444 ~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V--~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          444 LRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINI--TCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSC--CCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             eEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceE--EEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence            12345789999985532 22  23444433 455777777765443  367999953  4599999999999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=5.4e-38  Score=320.02  Aligned_cols=321  Identities=9%  Similarity=0.084  Sum_probs=251.0

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF  262 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i  262 (536)
                      +.+..+.|+|+++.++.          ++.||.+++|++...... ....| ..+....|+|  ++.+|++|+.||.|++
T Consensus        57 ~~~~~~~~s~~g~~l~~----------~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~dg~i~i  123 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYK----------ARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKL--QMRRFILGTTEGDIKV  123 (420)
T ss_dssp             BCCTTCEEEEEETTEEE----------EEETTEEEEEECCSEETTTTSCSC-CEEEEEEECS--SSCEEEEEETTSCEEE
T ss_pred             ccccceeeeecCCeEEE----------EEcCCcEEEEEecccceeeEEecC-CceEEEEEec--CCCEEEEEECCCCEEE
Confidence            44557899999999884          477899999998543322 22333 4445557788  9999999999999999


Q ss_pred             EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCEEE
Q 009380          263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLY  341 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~  341 (536)
                      ||+.+    ......+.+|...|.+++|+|++ .+|++++.|+.|++||+.++... .+..|...|.+++|+|++ .+|+
T Consensus       124 wd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~  197 (420)
T 3vl1_A          124 LDSNF----NLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVL  197 (420)
T ss_dssp             ECTTS----CEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-TEEE
T ss_pred             EeCCC----cceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEE
Confidence            99986    66777778999999999999998 99999999999999999987654 445689999999999998 8999


Q ss_pred             EEECCCeEEEEECCCCccceeEec---cCCCeEEEE---------------------EecCCCCEEEEEeCCCcEEEEeC
Q 009380          342 FGEGQGGLNIWDVRSRKSATEWLL---HEARINTID---------------------FNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       342 ~g~~dg~i~i~d~~~~~~~~~~~~---h~~~i~~i~---------------------~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                      +++.||.|++||+++++.+..+..   |...|.+++                     |+|++ .+|++|+.||.|++||+
T Consensus       198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~  276 (420)
T 3vl1_A          198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNV  276 (420)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEET
T ss_pred             EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEEC
Confidence            999999999999999998888874   444555555                     46766 69999999999999999


Q ss_pred             CCCCCCCCCcceee-cccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCCC
Q 009380          398 RSMATDKPEPMKVL-SHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDS  474 (536)
Q Consensus       398 ~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~  474 (536)
                      +++.    ...... .|...|.+++|+|++. +|++++.||.|++||+++++. +..+....  ...+.   ..+.+++.
T Consensus       277 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~---~~~~~~~~  347 (420)
T 3vl1_A          277 FSKE----QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPIN---NVYFAAGA  347 (420)
T ss_dssp             TTCC----EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEE---EEEEETTE
T ss_pred             CCCc----eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCce---EEEeCCCC
Confidence            9853    333333 5889999999999998 999999999999999998754 55554221  22333   33456888


Q ss_pred             EEEEEcCCCcEEEEcCCccccc---------eeccCCceeeeeeeEeecCCCCC---EEEEEccCCeEEEEecC
Q 009380          475 CVFIGNMTRTVEVISPAQRRSV---------ATLQSPYISAIPCRFHAHPHQVG---TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       475 ~l~~gs~dg~I~v~d~~~~~~~---------~~l~~~~~~~~~~~~~~~p~~~~---~lasgs~Dg~v~iW~~d  536 (536)
                      +|++++.|+.|++|++......         ..+..+... + ..++|+|. +.   .|++++.+|.+.+|+++
T Consensus       348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-v-~~~~~s~~-~~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDA-V-SQFCYVSD-DESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCC-C-CEEEEECC-SSSSCEEEEEETTTEEEEEESC
T ss_pred             EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcc-e-EEEEEccC-CCCcceEEEEcCCceEEEEecc
Confidence            9999999999999998774221         122222222 2 46788884 46   67777788999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=314.90  Aligned_cols=315  Identities=18%  Similarity=0.250  Sum_probs=252.3

Q ss_pred             ccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-------------
Q 009380          213 VGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-------------  278 (536)
Q Consensus       213 ~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-------------  278 (536)
                      .++.+++|++... ...+.+.|.+.|++++|+|. ++.+|++|+.||.|++|++.+..    ....+             
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~~~~~~~~~~~~   95 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPV-EGRYMLSGGSDGVIVLYDLENSS----RQSYYTCKAVCSIGRDHP   95 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTT-TCCEEEEEETTSCEEEEECCCCS----SSSCEEECEEEEECTTCT
T ss_pred             ccCcceeeccccCcceeeeeccCCcEEEEEEecC-CCCEEEEEcCCCeEEEEECCCCc----ccceEecccccccccccc
Confidence            3456777887543 44566889999999999985 67899999999999999999743    22222             


Q ss_pred             ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC--CEEEEEECCCeEEEEECCC
Q 009380          279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV--NTLYFGEGQGGLNIWDVRS  356 (536)
Q Consensus       279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~--~~l~~g~~dg~i~i~d~~~  356 (536)
                      .+|...|.+++|+|++..+|++++.||.|++||+.++.....+.+...+.++.|.+.+.  .++++++.+|.|++||+++
T Consensus        96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  175 (408)
T 4a11_B           96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS  175 (408)
T ss_dssp             TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred             ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence            35999999999999554899999999999999999999888888999999999998642  4999999999999999999


Q ss_pred             CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC------------CCCCcceeecccCceeEEEEcc
Q 009380          357 RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT------------DKPEPMKVLSHKRAVHSAYFSP  424 (536)
Q Consensus       357 ~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~------------~~~~~~~~~~~~~~v~~l~~sp  424 (536)
                      ++.+..+..|...|.+++|+|++..+|++++.||.|++||++....            ..........|...|.+++|+|
T Consensus       176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  255 (408)
T 4a11_B          176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS  255 (408)
T ss_dssp             SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred             cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence            9999999999999999999999866899999999999999987541            0111112246889999999999


Q ss_pred             CCCeEEEEeCCCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380          425 SGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY  503 (536)
Q Consensus       425 ~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~  503 (536)
                      ++++|++++.|+.|++||+.+++......... ........+.. ....+..+++++.++.|++||+.+++.+..+.+|.
T Consensus       256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  334 (408)
T 4a11_B          256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY  334 (408)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE-CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred             CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE-ecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence            99999999999999999999887655442111 11100111111 12334567777789999999999999999998766


Q ss_pred             eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          504 ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       504 ~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ..+.  .++|+| ++.+|++|+.||.|++|+++
T Consensus       335 ~~v~--~~~~s~-~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          335 KTVD--CCVFQS-NFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             SCEE--EEEEET-TTTEEEEEETTSCEEEEEEC
T ss_pred             CeEE--EEEEcC-CCCEEEEECCCCeEEEEeCC
Confidence            5544  678888 56999999999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.3e-37  Score=303.74  Aligned_cols=291  Identities=16%  Similarity=0.227  Sum_probs=239.6

Q ss_pred             cccccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCC-CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          229 IARIMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQD-EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~-~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      .+++|.+.|++|+|+|  + +++|++|+.||+|+|||+..... .......+.+|...|.+++|+|++ .+|++++.|+.
T Consensus        33 tL~GH~~~V~~v~~sp--~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~  109 (340)
T 4aow_A           33 TLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGT  109 (340)
T ss_dssp             EECCCSSCEEEEEECT--TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             EECCccCCEEEEEEeC--CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCC-CEEEEEccccc
Confidence            3678999999999999  6 68999999999999999986432 123566789999999999999999 99999999999


Q ss_pred             EEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCC-CEE
Q 009380          307 IRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNP-NIM  383 (536)
Q Consensus       307 I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~-~~l  383 (536)
                      |++|+.......... .+...+..+.+++++ ++|++++.|+.+++||+..... ...+.+|...+..++|++++. .++
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  188 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII  188 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence            999999987655444 456788889999988 7899999999999999886544 344557999999999998653 478


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      ++++.|+.|++||+++++    ....+.+|...|++++|+|++++|++++.|+.|++||+++.+.+..+.+..    .+.
T Consensus       189 ~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~----~v~  260 (340)
T 4aow_A          189 VSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD----IIN  260 (340)
T ss_dssp             EEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS----CEE
T ss_pred             EEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc----eEE
Confidence            899999999999999853    445556899999999999999999999999999999999988877775432    233


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC--------CceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS--------PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~--------~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                        .+.|+|++. +++++.|+.|++||+.++..+..+..        .|...+ ..++|+| ++.+|++|+.||.|+|||+
T Consensus       261 --~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~s~-dg~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          261 --ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC-TSLAWSA-DGQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             --EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCE-EEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred             --eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCE-EEEEECC-CCCEEEEEeCCCEEEEEeC
Confidence              367888875 45566799999999998877666543        123333 5688999 6799999999999999997


Q ss_pred             C
Q 009380          536 D  536 (536)
Q Consensus       536 d  536 (536)
                      +
T Consensus       336 ~  336 (340)
T 4aow_A          336 T  336 (340)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.1e-37  Score=336.77  Aligned_cols=293  Identities=16%  Similarity=0.206  Sum_probs=240.0

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      .++.|.+.|++|+|+|. ++++|++|+.||+|+||++...... ......+.+|...|.+++|+|++ .+|++|+.||+|
T Consensus       377 ~l~~H~~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcE
Confidence            46789999999999983 3579999999999999999864221 23456788999999999999998 999999999999


Q ss_pred             EEEECCCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccCCCeEEEEEecCCC-CE
Q 009380          308 RLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHEARINTIDFNPRNP-NI  382 (536)
Q Consensus       308 ~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~~i~~i~~~p~~~-~~  382 (536)
                      ++||+.++... .+.+|...|.+++|+|++ ++|++|+.|++|++||+.........   .+|...|.+++|+|++. .+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  533 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT  533 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence            99999988655 445789999999999998 79999999999999998654332221   36889999999999763 58


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI  462 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  462 (536)
                      |++|+.|++|++||+++.+    ....+.+|...|++++|+|++++|++++.|++|+|||+.+++.+..+.+.    ..+
T Consensus       534 l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~----~~v  605 (694)
T 3dm0_A          534 IVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN----SVI  605 (694)
T ss_dssp             EEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS----SCE
T ss_pred             EEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC----CcE
Confidence            9999999999999998753    44455689999999999999999999999999999999988776655332    223


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee-----------------eeeeeEeecCCCCCEEEEEc
Q 009380          463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS-----------------AIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~-----------------~~~~~~~~~p~~~~~lasgs  525 (536)
                      .  .++|+|++.+|++++ ++.|+|||+.++..+..+..+...                 ..+..++|+| ++.+|++|+
T Consensus       606 ~--~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs  681 (694)
T 3dm0_A          606 H--ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGY  681 (694)
T ss_dssp             E--EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEEE
T ss_pred             E--EEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEEc
Confidence            3  477999998887776 556999999999877766532111                 1235788999 679999999


Q ss_pred             cCCeEEEEecC
Q 009380          526 GGGQVYVWTSD  536 (536)
Q Consensus       526 ~Dg~v~iW~~d  536 (536)
                      .||.|+||++.
T Consensus       682 ~Dg~i~iW~i~  692 (694)
T 3dm0_A          682 TDGVIRVWGIG  692 (694)
T ss_dssp             TTSEEEEEEC-
T ss_pred             CCCeEEEEecc
Confidence            99999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.1e-37  Score=304.72  Aligned_cols=300  Identities=16%  Similarity=0.174  Sum_probs=248.5

Q ss_pred             ccccccceecccccceeeeecCCC-CcccccccccccccccccccceEEecccccCc------cccccccCCceEEEEEE
Q 009380          171 KDENLGFVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP------ENIARIMPGRITQMKFL  243 (536)
Q Consensus       171 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~------~~~~~~~~~~I~~v~~~  243 (536)
                      +.+.++.+|+||.+.|.++.|+|+ +++++          +++.||.|+||++....      ...+++|.+.|.+++|+
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~----------S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s   95 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMIL----------SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS   95 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEE----------EEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEE----------EEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC
Confidence            345677889999999999999998 56777          55899999999985432      23457799999999999


Q ss_pred             ecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE--ee
Q 009380          244 PCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL--VY  321 (536)
Q Consensus       244 p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~--~~  321 (536)
                      |  ++.+|++|+.||.|++|+...    .........+...+..+.+++++ .+|++++.|+.+++||+.......  ..
T Consensus        96 ~--dg~~l~s~~~d~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~  168 (340)
T 4aow_A           96 S--DGQFALSGSWDGTLRLWDLTT----GTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDE  168 (340)
T ss_dssp             T--TSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred             C--CCCEEEEEcccccceEEeecc----cceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEec
Confidence            9  999999999999999999987    66777778888999999999998 999999999999999998765433  34


Q ss_pred             cCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          322 SSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       322 ~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      .|...+..++|++++. .++++++.|+.|++||+++++.+..+.+|...|++++|+|++ .+|++|+.||.|++||+++.
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTT
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccC
Confidence            5788999999988753 467889999999999999999999999999999999999987 79999999999999999985


Q ss_pred             CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC----CCCceeeeeEEEEcCCCCEE
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN----QTGRWISSFRAIWGWDDSCV  476 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~~g~~l  476 (536)
                           .......+...|.++.|+|++. +++++.|+.|++||+++......+....    ..+....+..++|+|+|++|
T Consensus       248 -----~~~~~~~~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  321 (340)
T 4aow_A          248 -----KHLYTLDGGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTL  321 (340)
T ss_dssp             -----EEEEEEECSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEE
T ss_pred             -----ceeeeecCCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEE
Confidence                 3445556778999999999875 5667779999999998876655543211    11112233457899999999


Q ss_pred             EEEcCCCcEEEEcCCccc
Q 009380          477 FIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~~~~  494 (536)
                      ++|+.||.|+|||+.+|.
T Consensus       322 ~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          322 FAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEETTSCEEEEEEEC--
T ss_pred             EEEeCCCEEEEEeCCCcC
Confidence            999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4e-37  Score=301.02  Aligned_cols=291  Identities=14%  Similarity=0.157  Sum_probs=244.3

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      +.+...+.+|...|.++.|+|+++.++.          ++.||.|++|++... .......|...|.+++|+|  ++++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s----------~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l   80 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLAS----------SSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS--DSNLL   80 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEE----------eeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC--CCCEE
Confidence            4566788999999999999999998884          578899999997433 3344578999999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSL  330 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l  330 (536)
                      ++|+.||.|++||+.+    ...+..+.+|...|.++.|+|++ ++|++++.|+.|++||++++..... ..|...|.++
T Consensus        81 ~s~~~d~~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  155 (312)
T 4ery_A           81 VSASDDKTLKIWDVSS----GKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV  155 (312)
T ss_dssp             EEEETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEECCCCEEEEEECCC----CcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEE
Confidence            9999999999999987    67888999999999999999998 9999999999999999998766544 4678899999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~  409 (536)
                      +|+|++ .+|++++.||.|++||+++++.+..+. .+...+.+++|+|++ .+|++++.||.|++||+++++    ....
T Consensus       156 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~  229 (312)
T 4ery_A          156 HFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK----CLKT  229 (312)
T ss_dssp             EECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE----EEEE
T ss_pred             EEcCCC-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----EEEE
Confidence            999998 899999999999999999998877664 566789999999987 799999999999999999853    3334


Q ss_pred             eecccCcee--EEEEc-cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc--CCCc
Q 009380          410 VLSHKRAVH--SAYFS-PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN--MTRT  484 (536)
Q Consensus       410 ~~~~~~~v~--~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs--~dg~  484 (536)
                      +.+|...+.  ...++ +++.+|++++.||.|++||+.+.+.+..+....   ..  +..++|+|++.+|++++  .|+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~---~~--v~~~~~~p~~~~l~s~~~~~d~~  304 (312)
T 4ery_A          230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT---DV--VISTACHPTENIIASAALENDKT  304 (312)
T ss_dssp             ECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS---SC--EEEEEECSSSSEEEEEECTTTCC
T ss_pred             EEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC---Cc--EEEEeecCcCCceEEEEccCCcc
Confidence            445654432  23344 578899999999999999999888777664222   12  33478999999999986  6899


Q ss_pred             EEEEcCC
Q 009380          485 VEVISPA  491 (536)
Q Consensus       485 I~v~d~~  491 (536)
                      |++|+..
T Consensus       305 i~~W~~d  311 (312)
T 4ery_A          305 IKLWKSD  311 (312)
T ss_dssp             EEEEECC
T ss_pred             EEEecCC
Confidence            9999864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.4e-37  Score=311.14  Aligned_cols=291  Identities=13%  Similarity=0.141  Sum_probs=238.2

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCC--ceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN--GIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      +...|.+.|++++|+|  ++++|++|+.||.|++|++.+    ..  .+..+.+|...|.+++|+|++ .+|++++.||.
T Consensus         3 ~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~v~i~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~   75 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSG----NKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRN   75 (372)
T ss_dssp             EEESCSSCCCEEEECT--TSSEEEEECSSSEEEEEEEET----TEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred             eecccCCCeEEEEECC--CCCEEEEEeCCCEEEEEeCCC----CcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCe
Confidence            3466899999999999  999999999999999999986    44  788889999999999999998 99999999999


Q ss_pred             EEEEECCCCeEE---EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeE-eccCCCeEEEEEecCC
Q 009380          307 IRLMDAEKEVFD---LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEW-LLHEARINTIDFNPRN  379 (536)
Q Consensus       307 I~vwd~~~~~~~---~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~-~~h~~~i~~i~~~p~~  379 (536)
                      |++||+.++...   ....|...|.+++|+|++ ++|++++.||.|++||++.+..   ...+ ..|...|.+++|+|++
T Consensus        76 i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             EEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             EEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            999999888643   335688899999999998 8999999999999999998774   2333 4689999999999977


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCC--------------CCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          380 PNIMATSSTDGTACIWDLRSMAT--------------DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~--------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                       .+|++++.||.|++||++....              .......+..|...|.+++|+|++.+|++++.|+.|++||+.+
T Consensus       155 -~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          155 -VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             -SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred             -CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence             7999999999999999753210              0123333447899999999999999999999999999999998


Q ss_pred             CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc--cc--cc-------------------------
Q 009380          446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ--RR--SV-------------------------  496 (536)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~--~~--~~-------------------------  496 (536)
                      ++.+..+....   ..+  ..++|+|++.+|++| .|+.|++|++.+  +.  .+                         
T Consensus       234 ~~~~~~~~~~~---~~v--~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1k8k_C          234 KMAVATLASET---LPL--LAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDK  307 (372)
T ss_dssp             TTEEEEEECSS---CCE--EEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCC
T ss_pred             CceeEEEccCC---CCe--EEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccc
Confidence            88777775322   123  347899999988888 899999999987  31  00                         


Q ss_pred             -----------eeccCCceeeeeeeEeecCCCC---CEEEEEccCCeEEEEec
Q 009380          497 -----------ATLQSPYISAIPCRFHAHPHQV---GTLAGATGGGQVYVWTS  535 (536)
Q Consensus       497 -----------~~l~~~~~~~~~~~~~~~p~~~---~~lasgs~Dg~v~iW~~  535 (536)
                                 ..+...|...+ ..++|+|.++   .+|++|+.||.|+||++
T Consensus       308 ~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~  359 (372)
T 1k8k_C          308 KASSEGSAAAGAGLDSLHKNSV-SQISVLSGGKAKCSQFCTTGMDGGMSIWDV  359 (372)
T ss_dssp             CC---------CCCSSSSSSCE-EEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             ccccccCccccccccccccCCc-ceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence                       23332344444 4567776676   89999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-37  Score=341.92  Aligned_cols=201  Identities=13%  Similarity=0.091  Sum_probs=172.7

Q ss_pred             ecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCC
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLG  258 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg  258 (536)
                      ..||.+.|.++.|+|++++++          +++.||.|+||+...........|...|.+++|+|  + .+|++++.|+
T Consensus        13 ~~gh~~~V~~lafspdg~~lA----------sgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp--g-~~L~S~s~D~   79 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLA----------IATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK--G-IYLVVINAKD   79 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEE----------EEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET--T-TEEEEEETTC
T ss_pred             ccCCCCCcEEEEECCCCCEEE----------EEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC--C-CEEEEEECcC
Confidence            358999999999999999998          45788999999975443333345788999999999  3 4999999999


Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE------------eecCCCc
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL------------VYSSEYA  326 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~------------~~~~~~~  326 (536)
                      +|+|||+.+    ...+..+. |...|++++|+|++ ++|++|+.||.|++||+.++....            ..+|...
T Consensus        80 ~v~lWd~~~----~~~~~~~~-~~~~V~~v~~sp~g-~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~  153 (902)
T 2oaj_A           80 TVYVLSLYS----QKVLTTVF-VPGKITSIDTDASL-DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSP  153 (902)
T ss_dssp             EEEEEETTT----CSEEEEEE-CSSCEEEEECCTTC-SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCC
T ss_pred             eEEEEECCC----CcEEEEEc-CCCCEEEEEECCCC-CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCC
Confidence            999999987    56677775 67899999999999 999999999999999999887531            2357789


Q ss_pred             eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc------------------CCCeEEEEEecCCCCEEEEEeC
Q 009380          327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH------------------EARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h------------------~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      |.+++|+|++...+++|+.||.| +||+++++.+..+..|                  ...|++++|+|++ .+|++|+.
T Consensus       154 V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~  231 (902)
T 2oaj_A          154 IVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHE  231 (902)
T ss_dssp             CCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEET
T ss_pred             eEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEEC
Confidence            99999999765789999999999 9999999888777655                  5779999999987 79999999


Q ss_pred             CCcEEEEeCCCC
Q 009380          389 DGTACIWDLRSM  400 (536)
Q Consensus       389 dg~i~iwdl~~~  400 (536)
                      ||.|++||++++
T Consensus       232 Dg~i~lWd~~~g  243 (902)
T 2oaj_A          232 DNSLVFWDANSG  243 (902)
T ss_dssp             TCCEEEEETTTC
T ss_pred             CCeEEEEECCCC
Confidence            999999999764

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.4e-37  Score=333.45  Aligned_cols=296  Identities=16%  Similarity=0.198  Sum_probs=246.6

Q ss_pred             cccccceecccccceeeeecCCCC-cccccccccccccccccccceEEecccccCc------cccccccCCceEEEEEEe
Q 009380          172 DENLGFVIKDEFNGFKTCKDEGLG-VGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP------ENIARIMPGRITQMKFLP  244 (536)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~------~~~~~~~~~~I~~v~~~p  244 (536)
                      .+.++..+.+|.+.|.++.+++++ ++++          +++.|+.|+||++....      ...+.+|.+.|.+++|+|
T Consensus       371 ~l~~~~~l~~H~~~V~~v~~~~~~~~~l~----------s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~  440 (694)
T 3dm0_A          371 GLVLKGTMRAHTDMVTAIATPIDNADIIV----------SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS  440 (694)
T ss_dssp             SSEEEEEEECCSSCEEEEECCTTCCSEEE----------EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT
T ss_pred             ccchhhhcccCCceeEEEEecCCCCCEEE----------EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC
Confidence            345566789999999999999876 5566          56899999999985432      234578999999999999


Q ss_pred             cCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee---
Q 009380          245 CSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY---  321 (536)
Q Consensus       245 ~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~---  321 (536)
                        ++.+|++|+.||+|+|||+.+    ...+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.......+.   
T Consensus       441 --~g~~l~sgs~Dg~v~vwd~~~----~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~  513 (694)
T 3dm0_A          441 --DGQFALSGSWDGELRLWDLAA----GVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGG  513 (694)
T ss_dssp             --TSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSST
T ss_pred             --CCCEEEEEeCCCcEEEEECCC----CcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCC
Confidence              999999999999999999987    67888999999999999999998 99999999999999998776544432   


Q ss_pred             -cCCCceeEEEecCCCC-CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          322 -SSEYAVFSLSQQPNNV-NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       322 -~~~~~i~~l~~~~~~~-~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                       +|...|.+++|+|++. ..|++|+.||.|++||+++++....+.+|...|++++|+|++ .+|++|+.||.|++||+++
T Consensus       514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~  592 (694)
T 3dm0_A          514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAE  592 (694)
T ss_dssp             TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTT
T ss_pred             CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC
Confidence             5778899999999863 589999999999999999999999999999999999999987 7999999999999999998


Q ss_pred             CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--------------CCceeeee
Q 009380          400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--------------TGRWISSF  465 (536)
Q Consensus       400 ~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~  465 (536)
                      ++     .+....+...|.+++|+|++.+|++++ ++.|+|||+.+...+..+.....              ....+.+.
T Consensus       593 ~~-----~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (694)
T 3dm0_A          593 GK-----KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT  666 (694)
T ss_dssp             TE-----EEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred             Cc-----eEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence            53     333445667899999999998776655 66699999998877665532110              01112234


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          466 RAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .+.|+|+|++|++|+.||.|+||++.
T Consensus       667 ~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          667 SLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            57899999999999999999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-36  Score=314.43  Aligned_cols=319  Identities=16%  Similarity=0.154  Sum_probs=259.3

Q ss_pred             ceecccccce-eeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380          177 FVIKDEFNGF-KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       177 ~~~~~~~~~v-~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      ..+.+|.+.| .++.+  ++..++          +++.||.|++|++... .......|.+.|++++|+|  ++ +|++|
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~----------sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~--~~-~l~s~  179 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVI----------TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GG-ILVSG  179 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEE----------EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--TT-EEEEE
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEE----------EEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcC--CC-EEEEE
Confidence            4678998886 55555  455666          5688999999997543 2344568999999999998  66 99999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec--CCCCEEEEEECCCeEEEEECCCCe----------------
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ--YCLSKIFTSCYDGLIRLMDAEKEV----------------  316 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~~l~s~s~dg~I~vwd~~~~~----------------  316 (536)
                      +.||+|++||+.+    +..+..+.+|...|.+++|++  ++ .+|++++.||.|++||+.++.                
T Consensus       180 s~dg~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          180 STDRTVRVWDIKK----GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             ETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             eCCCCEEEEECCC----CcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence            9999999999997    678889999999999999995  55 899999999999999998764                


Q ss_pred             --------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          317 --------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       317 --------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                              .....+|...+.++.  +++ +++++|+.||.|++||+++++.+..+.+|...|.+++|+|++ .++++|+.
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~  330 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASM  330 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEET
T ss_pred             ccCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC-CEEEEEeC
Confidence                    223446777787774  445 799999999999999999999999999999999999999987 69999999


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      ||.|++||+++++    ....+.+|...|.++.|+  +.+|++++.||.|++||+.+........+...    +..  ++
T Consensus       331 dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~----~~~--~~  398 (464)
T 3v7d_B          331 DTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNL----SAI--TT  398 (464)
T ss_dssp             TSCEEEEETTTTE----EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTC----CCE--EE
T ss_pred             CCcEEEEECCCCc----EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCC----ccE--EE
Confidence            9999999999853    445556899999999997  57999999999999999998776655543321    222  56


Q ss_pred             EcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          469 WGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      |++++.+|++|+ |+.|++||+.+++.+..+...+...+ ..++|++  ..++++++.||.+.+|-+
T Consensus       399 ~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v-~~v~~~~--~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          399 FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQI-WSVNFKG--KTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEE-EEEEEET--TEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcE-EEEEecC--CEEEEEEEeCCeEEEEEe
Confidence            889999999998 89999999999998886444344444 4677763  366777788888777654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.1e-37  Score=314.24  Aligned_cols=320  Identities=14%  Similarity=0.140  Sum_probs=244.6

Q ss_pred             eeeecCCCCcccccccccccccccccccceEEecccccCccccc-cccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380          187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL  265 (536)
Q Consensus       187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~  265 (536)
                      ....|++++..++..                .+|+........+ ..|.+.|++++|+|. ++.+|++|+.||.|+|||+
T Consensus        31 ~~~~f~~~~~~~~~~----------------~~w~~~g~~~~~~~~~h~~~V~~~~~s~~-~~~~l~s~s~dg~v~vwd~   93 (437)
T 3gre_A           31 DYKEFGPIQEIVRSP----------------NMGNLRGKLIATLMENEPNSITSSAVSPG-ETPYLITGSDQGVIKIWNL   93 (437)
T ss_dssp             GCGGGCCCCCCCCCC----------------CGGGCCCCEEEEECTTTTSCEEEEEEECS-SSCEEEEEETTSEEEEEEH
T ss_pred             chhhcCCcccccccc----------------ccccccceEEeeeccCCCCceEEEEECCC-CCCEEEEecCCceEEEeEC
Confidence            344567777766643                1377655544445 778999999999994 5789999999999999998


Q ss_pred             CC---CCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC---CCeEEEee-----------c--CCCc
Q 009380          266 DS---QQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE---KEVFDLVY-----------S--SEYA  326 (536)
Q Consensus       266 ~~---~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~---~~~~~~~~-----------~--~~~~  326 (536)
                      .+   ... ......+ .|...|.+++|+|++ .+|++++.||.|++||++   ++......           .  +...
T Consensus        94 ~~~~~~~~-~~~~~~~-~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  170 (437)
T 3gre_A           94 KEIIVGEV-YSSSLTY-DCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY  170 (437)
T ss_dssp             HHHHTTCC-CSCSEEE-ECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred             cccccCcc-cceeeec-cCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccC
Confidence            75   210 1223333 599999999999988 999999999999999995   33322211           1  4556


Q ss_pred             eeEEE--ecCCCCCEEEEEECCCeEEEEECCCCccceeEec--cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          327 VFSLS--QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       327 i~~l~--~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~--h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                      +.++.  +++++ .+|++|+.||.|++||+++++.+..+..  |...|++++|+|++ .+|++|+.||.|++||++++. 
T Consensus       171 ~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~-  247 (437)
T 3gre_A          171 AVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV-  247 (437)
T ss_dssp             EEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE-
T ss_pred             ceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc-
Confidence            66666  45666 7999999999999999999999999987  89999999999986 799999999999999999842 


Q ss_pred             CCCCcceee-cccCceeEEEEcc----CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC---------C----------
Q 009380          403 DKPEPMKVL-SHKRAVHSAYFSP----SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ---------T----------  458 (536)
Q Consensus       403 ~~~~~~~~~-~~~~~v~~l~~sp----~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~---------~----------  458 (536)
                         ....+. .|...|.+++|+|    ++.+|++++.|+.|++||+.+++....+.....         .          
T Consensus       248 ---~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  324 (437)
T 3gre_A          248 ---LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC  324 (437)
T ss_dssp             ---EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred             ---EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence               223332 7888999996665    577999999999999999998887776652210         0          


Q ss_pred             C--ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC----------------------------------
Q 009380          459 G--RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP----------------------------------  502 (536)
Q Consensus       459 ~--~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~----------------------------------  502 (536)
                      +  ..-.+..++|+ ++.+|++|+.|+.|++||+.+++.+..+.++                                  
T Consensus       325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (437)
T 3gre_A          325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDS  403 (437)
T ss_dssp             CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred             ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcc
Confidence            0  11112336788 7789999999999999999999888877763                                  


Q ss_pred             --ceeeeeeeEeecCC-CCCEEEEEccCCeEEEEe
Q 009380          503 --YISAIPCRFHAHPH-QVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       503 --~~~~~~~~~~~~p~-~~~~lasgs~Dg~v~iW~  534 (536)
                        |...+ ..+.+++. +..+|++|+.||.|+||+
T Consensus       404 ~~h~~~I-~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          404 LYHHDII-NSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ---CCCE-EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccce-eeEeeeccCCceEEEEEcCCceEEEeC
Confidence              33333 34566664 357999999999999995

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.6e-37  Score=354.65  Aligned_cols=337  Identities=16%  Similarity=0.196  Sum_probs=277.2

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~t  253 (536)
                      ....+.+|.+.|.++.|+|+|+.++.          ++.||.|.+|++.... ......|.+.|++++|+|  ++++|++
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s----------~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s  674 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIAS----------CGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS--DDSYIAT  674 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEE----------EeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec--CCCEEEE
Confidence            34567899999999999999999984          4788999999985433 344578999999999999  9999999


Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC-CCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEE
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC-LSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLS  331 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~-~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~  331 (536)
                      |+.||.|+|||+.+    +..+..+.+|...|.+++|+|++ ..++++++.||.|++||+.++.... +.+|...|.+++
T Consensus       675 ~~~d~~v~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~  750 (1249)
T 3sfz_A          675 CSADKKVKIWDSAT----GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCR  750 (1249)
T ss_dssp             EETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEE
T ss_pred             EeCCCeEEEEECCC----CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEE
Confidence            99999999999998    78889999999999999999953 2689999999999999999887654 457889999999


Q ss_pred             ecCCCCCEEEEEECCCeEEEEECCCCccceeE------------------------------------------------
Q 009380          332 QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW------------------------------------------------  363 (536)
Q Consensus       332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------------------------------------------------  363 (536)
                      |+|++ .+|++++.||.|++||+++++....+                                                
T Consensus       751 ~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          751 FSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS  829 (1249)
T ss_dssp             ECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred             EecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence            99998 89999999999999999776433222                                                


Q ss_pred             -------eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC
Q 009380          364 -------LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD  436 (536)
Q Consensus       364 -------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg  436 (536)
                             .+|...|.+++|+|++ .++++++.||.|++||+.++.    ......+|...|.+++|+|+|.+|++++.|+
T Consensus       830 ~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg  904 (1249)
T 3sfz_A          830 GLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL----KVADCRGHLSWVHGVMFSPDGSSFLTASDDQ  904 (1249)
T ss_dssp             CEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc----eeeecCCCccceEEEEECCCCCEEEEEeCCC
Confidence                   1577889999999977 799999999999999999853    4555668999999999999999999999999


Q ss_pred             cEEEEeCCCCCcceE------------------Ee---------ccCCCCc-----eeeeeEEEEcCCCCEEEEEcCCCc
Q 009380          437 TIGIWSGVNFENTSM------------------IH---------HNNQTGR-----WISSFRAIWGWDDSCVFIGNMTRT  484 (536)
Q Consensus       437 ~I~iwd~~~~~~~~~------------------~~---------~~~~~~~-----~~~~~~~~~s~~g~~l~~gs~dg~  484 (536)
                      .|++||+.+......                  ..         .....+.     ......++|+|++.++++|+.+|.
T Consensus       905 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~  984 (1249)
T 3sfz_A          905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA  984 (1249)
T ss_dssp             CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC
Confidence            999999653211000                  00         0000000     001234789999999999999999


Q ss_pred             EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          485 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       485 I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      |.+|++.+++.+..+.+|...+.  .+.|+| ++.+|++++.||.|++|+++
T Consensus       985 i~i~d~~~~~~~~~~~~h~~~v~--~l~~s~-dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A          985 IKIIELPNNRVFSSGVGHKKAVR--HIQFTA-DGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp             CEEEETTTTSCEEECCCCSSCCC--CEEECS-SSSCEEEECSSSBEEEEETT
T ss_pred             EEEEEcCCCceeeecccCCCceE--EEEECC-CCCEEEEEcCCCEEEEEECC
Confidence            99999999988888877655443  678888 56999999999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.6e-38  Score=314.76  Aligned_cols=250  Identities=15%  Similarity=0.179  Sum_probs=198.4

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      +.+.+.+.|++++|+|  ++++|++|+.||.|+||++.+..  ...+..+.+|...|.+++|+|++ ++|++++.|+.|+
T Consensus         6 ~~~~~~~~v~~~~~s~--~g~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~   80 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNS--QRTEFVTTTATNQVELYEQDGNG--WKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAY   80 (377)
T ss_dssp             EEEECSSCCSCCEECS--SSSEEECCCSSSCBCEEEEETTE--EEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEE
T ss_pred             eEecCCCcEEEEEECC--CCCEEEEecCCCEEEEEEccCCc--eEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEE
Confidence            4466788999999999  99999999999999999998621  15677888999999999999998 9999999999999


Q ss_pred             EEECCCCe----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc---cceeEec-cCCCeEEEEEecCCC
Q 009380          309 LMDAEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK---SATEWLL-HEARINTIDFNPRNP  380 (536)
Q Consensus       309 vwd~~~~~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~---~~~~~~~-h~~~i~~i~~~p~~~  380 (536)
                      +||+.++.    ......|...|.+++|+|++ ++|++++.||.|++||+++++   ....+.. |...|.+++|+|++ 
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-  158 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-  158 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-
Confidence            99999876    45566789999999999988 899999999999999999887   4677777 99999999999977 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCC-------------CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          381 NIMATSSTDGTACIWDLRSMATDK-------------PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~-------------~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      .+|++++.|+.|++||++......             ..+.....|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            799999999999999986432110             1122222899999999999999999999999999999999887


Q ss_pred             c----ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          448 N----TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       448 ~----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .    +..+...   ...+  ..++|+|++++|++|+.++.+ +|+..
T Consensus       239 ~~~~~~~~~~~~---~~~v--~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          239 QPPRALITVKLS---QLPL--RSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEECCCEECS---SSCE--EEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CcceeeEeecCC---CCce--EEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            7    4444322   1223  347899999999999876655 66654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.2e-36  Score=307.46  Aligned_cols=294  Identities=14%  Similarity=0.169  Sum_probs=241.6

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC--CCCceEEeccCCCCEEEEEEecC---CC---CEEE
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD--EDNGIYLFRTHLGPISGIVTQQY---CL---SKIF  299 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~--~~~~~~~~~~h~~~V~~l~~~~~---~~---~~l~  299 (536)
                      ..++.|.+.|++++|+|    ++|++|+.||.|++|++.....  ....+..+.+|...|.+++|+|+   .+   .+|+
T Consensus        10 ~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            44678999999999987    6999999999999999987320  01268888899999999999998   34   5899


Q ss_pred             EEECCCeEEEEECCCCe------EEEeecC-----CCceeEEEec----CCCCCE-EEEEECCCeEEEEECCC------C
Q 009380          300 TSCYDGLIRLMDAEKEV------FDLVYSS-----EYAVFSLSQQ----PNNVNT-LYFGEGQGGLNIWDVRS------R  357 (536)
Q Consensus       300 s~s~dg~I~vwd~~~~~------~~~~~~~-----~~~i~~l~~~----~~~~~~-l~~g~~dg~i~i~d~~~------~  357 (536)
                      +++.||.|++||+.++.      ...+..|     ...|.+++|+    |++ .+ |++++.||.|++||+++      +
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCcccccccc
Confidence            99999999999998876      5555566     4899999999    888 78 99999999999999998      7


Q ss_pred             ccce-----eEe-------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec---c---cCceeE
Q 009380          358 KSAT-----EWL-------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS---H---KRAVHS  419 (536)
Q Consensus       358 ~~~~-----~~~-------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~---~---~~~v~~  419 (536)
                      +.+.     .+.       .|...|.+++|+|++  +|++++.||.|++||+++++    ....+..   |   ...|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR----PLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE----EEEEEECCC---CCCCCEEE
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc----eeEEEeccccccccCCccce
Confidence            7776     774       488999999999976  99999999999999999753    4444556   8   999999


Q ss_pred             EEEccCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCC----------CCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380          420 AYFSPSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQ----------TGRWISSFRAIWGWDDSCVFIGNMTRTVE  486 (536)
Q Consensus       420 l~~sp~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s~~g~~l~~gs~dg~I~  486 (536)
                      ++|+|++.+|++++.|   +.|++||+.+++.+..+.....          ....+  ..+.|+|++.+|++++.|+.|+
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~  316 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV--MSLSFNDSGETLCSAGWDGKLR  316 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCE--EEEEECSSSSEEEEEETTSEEE
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcE--EEEEECCCCCEEEEEeCCCeEE
Confidence            9999999999999999   9999999998887777643100          12223  3478999999999999999999


Q ss_pred             EEcCCccccceecc------CC--------------ceeeeeeeEeecCCCC----------CEEEEEccCCeEEEEecC
Q 009380          487 VISPAQRRSVATLQ------SP--------------YISAIPCRFHAHPHQV----------GTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       487 v~d~~~~~~~~~l~------~~--------------~~~~~~~~~~~~p~~~----------~~lasgs~Dg~v~iW~~d  536 (536)
                      +||+.+++.+..+.      .+              |...+ ..++|+| ++          .+|++++.||.|+||+++
T Consensus       317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v-~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV-FDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE-EEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             EEEcCCCceeEEEecccCcccchhhhhccccccccccCCce-eEEEecc-ccccccccccccceEEEecCCCcEEEEEcC
Confidence            99999999988888      54              13333 4688888 44          699999999999999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.3e-35  Score=305.32  Aligned_cols=321  Identities=14%  Similarity=0.163  Sum_probs=264.4

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      ...+.+|.+.|..+ +.++++.++          +++.||.|++|++... .......|.+.|++++|++    .+|++|
T Consensus       111 ~~~l~~h~~~v~~~-~~~~g~~l~----------sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~----~~l~s~  175 (445)
T 2ovr_B          111 PKVLKGHDDHVITC-LQFCGNRIV----------SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISG  175 (445)
T ss_dssp             CEEEECSTTSCEEE-EEEETTEEE----------EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEE
T ss_pred             eEEecccCCCcEEE-EEEcCCEEE----------EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC----CEEEEE
Confidence            34678999876443 455677776          4578999999998543 3345678999999999975    699999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEec
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQ  333 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~  333 (536)
                      +.||.|++||+.+    +..+..+.+|...|.++.|++   +.|++|+.||.|++||+.++.... +..|...|.+++| 
T Consensus       176 ~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-  247 (445)
T 2ovr_B          176 STDRTLKVWNAET----GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-  247 (445)
T ss_dssp             ETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred             eCCCeEEEEECCc----CcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence            9999999999987    678889999999999999963   789999999999999999876554 4468899999999 


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH  413 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~  413 (536)
                       ++ +++++|+.||.|++||+++++.+..+.+|...|.++.|  ++ .++++++.||.|++||+++++    ....+.+|
T Consensus       248 -~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~  318 (445)
T 2ovr_B          248 -DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN----CIHTLTGH  318 (445)
T ss_dssp             -CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC----EEEEECCC
T ss_pred             -CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC----EEEEEcCC
Confidence             44 78999999999999999999999999999999999999  34 689999999999999999864    44555688


Q ss_pred             cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ...+.++.++  +++|++++.||.|++||+.+++....+.........+..  +.|  ++.+|++|+.||.|++||+.++
T Consensus       319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC--LQF--NKNFVITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEE--EEE--CSSEEEEEETTSEEEEEETTTC
T ss_pred             cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEE--EEE--CCCEEEEEeCCCeEEEEECCCC
Confidence            8999988874  679999999999999999998888777543333334443  455  4679999999999999999999


Q ss_pred             ccceecc----CCceeeeeeeEeecCCCCCEEEEEccCCe----EEEEecC
Q 009380          494 RSVATLQ----SPYISAIPCRFHAHPHQVGTLAGATGGGQ----VYVWTSD  536 (536)
Q Consensus       494 ~~~~~l~----~~~~~~~~~~~~~~p~~~~~lasgs~Dg~----v~iW~~d  536 (536)
                      +.+..+.    ..+...+ ..++|+| ++.+|++|+.||.    |.|||++
T Consensus       393 ~~~~~~~~~~~~~~~~~v-~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          393 EFIRNLVTLESGGSGGVV-WRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             CEEEEEEECTTGGGTCEE-EEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             ceeeeeeccccCCCCceE-EEEEecC-CEEEEEEcccCCCCccEEEEEECC
Confidence            8888772    2233333 5788998 5689999999997    9999975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2e-36  Score=301.76  Aligned_cols=295  Identities=14%  Similarity=0.157  Sum_probs=231.2

Q ss_pred             cccccCCceEEEEEEec--CCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-----CCCCEEEEEEecCCC---CEE
Q 009380          229 IARIMPGRITQMKFLPC--SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-----HLGPISGIVTQQYCL---SKI  298 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~--~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~---~~l  298 (536)
                      +...|.+.|++++|+|.  .....+++++.++.|++|++.+    ...+..+..     |...|.+++|+|++.   .+|
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l   88 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS----QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLL   88 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG----GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC----CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEE
Confidence            44689999999999982  1145666667778999999986    344444443     668899999999931   699


Q ss_pred             EEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccCCCeEEEE
Q 009380          299 FTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHEARINTID  374 (536)
Q Consensus       299 ~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~~i~~i~  374 (536)
                      ++++.||.|++||+.++.....+ .|...|.+++|+|+++++|++|+.||.|++||+++++.+..+   ..|...|.+++
T Consensus        89 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  168 (366)
T 3k26_A           89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD  168 (366)
T ss_dssp             EEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred             EEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence            99999999999999988765544 589999999999944489999999999999999999988888   68999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEeCCCCCCCC------------------------CCcceeecccCceeEEEEccCCCeEE
Q 009380          375 FNPRNPNIMATSSTDGTACIWDLRSMATDK------------------------PEPMKVLSHKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~------------------------~~~~~~~~~~~~v~~l~~sp~g~~l~  430 (536)
                      |+|++ .+|++++.||.|++||+++++...                        ........|...|.+++|+  +.+|+
T Consensus       169 ~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~  245 (366)
T 3k26_A          169 YDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL  245 (366)
T ss_dssp             ECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred             ECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence            99977 799999999999999998742100                        0011112389999999998  77999


Q ss_pred             EEeCCCcEEEEeCCCCCc--------------ceEEeccCCCCceeeeeEEEEcCC--CCEEEEEcCCCcEEEEcCCccc
Q 009380          431 TTSFDDTIGIWSGVNFEN--------------TSMIHHNNQTGRWISSFRAIWGWD--DSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       431 t~s~dg~I~iwd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~--g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      +++.|+.|++||+.+...              ...+..   ....+.  .+.|+|+  +.+|++|+.||.|++||+.+++
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~--~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---SQCDIW--YMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---SSCCSS--CCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEecCCEEEEEeCCCccccccccccCCcchheeccccc---cCCcEE--EEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence            999999999999987654              122211   111222  3568888  9999999999999999999886


Q ss_pred             cce----eccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          495 SVA----TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       495 ~~~----~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ...    .+..+........++|+| ++.+|++++.||.|+|||++
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          321 PHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             GGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             CccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence            544    566553222235789999 67999999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.4e-36  Score=292.43  Aligned_cols=256  Identities=17%  Similarity=0.200  Sum_probs=207.6

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCe
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGL  306 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~  306 (536)
                      +..+|.+.|++++|+|  +|++|++|+.|++|+||++....  ...+..+.+|.++|.+++|+++  + .+|++|+.|++
T Consensus         4 ~~~~h~~~V~~~~~s~--~g~~las~s~D~~v~iw~~~~~~--~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~   78 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY--YGKRMATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGK   78 (297)
T ss_dssp             ECCSCSSCEEEEEECT--TSSEEEEEETTSCEEEEEBCSSC--BCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTE
T ss_pred             eccCCcCceEEEEECC--CCCEEEEEeCCCEEEEEecCCCC--cEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCE
Confidence            4578999999999999  99999999999999999997522  3567889999999999999864  5 89999999999


Q ss_pred             EEEEECCCCe---EEEeecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCC-
Q 009380          307 IRLMDAEKEV---FDLVYSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRN-  379 (536)
Q Consensus       307 I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~-  379 (536)
                      |++||++++.   ......|...|.+++|+|+. ..+|++++.||.|++||++++..  ...+.+|...|.+++|+|++ 
T Consensus        79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (297)
T 2pm7_B           79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  158 (297)
T ss_dssp             EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-
T ss_pred             EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcc
Confidence            9999998864   23345688999999999972 37999999999999999987642  45677899999999999963 


Q ss_pred             -----------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC---CeEEEEeCCCcEEEEeCCC
Q 009380          380 -----------PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG---SSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       380 -----------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~  445 (536)
                                 ..+|++|+.|++|++||++.+.........+.+|...|.+++|+|++   .+|++++.|++|+|||+.+
T Consensus       159 ~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             -----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                       36899999999999999987531111223455899999999999984   8999999999999999876


Q ss_pred             CCcce--EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          446 FENTS--MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       446 ~~~~~--~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .....  ...........  ...++|+|++++|++++.|+.|+||+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          239 EQGPWKKTLLKEEKFPDV--LWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             TTSCCEEEESSSSCCSSC--EEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             CCCccceeeeecccCCCc--EEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            43211  11111111222  3458899999999999999999999975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.4e-35  Score=290.46  Aligned_cols=281  Identities=13%  Similarity=0.189  Sum_probs=242.1

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc--ccc--c--ccCCceEEEEEEecCCccEEEE
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE--NIA--R--IMPGRITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~--~~~--~--~~~~~I~~v~~~p~~~~~~l~t  253 (536)
                      .+|...|.++.|+++++.++..          + +|.|++|++.....  .+.  .  .|...|.+++|+|  ++++|++
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~----------~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~  114 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTG----------G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIV  114 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEE----------C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEc----------C-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC--CCCEEEE
Confidence            4799999999999999999854          4 78999999854321  111  1  6889999999999  9999999


Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEe
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQ  332 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~  332 (536)
                      |+.||.|++|++.+..  ......+..|...|.+++|+|++ .+|++++.||.|++||++++.....+ .|...|.+++|
T Consensus       115 ~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          115 GGEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             EESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCC--cceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            9999999999998732  23567788899999999999998 99999999999999999988765544 57889999999


Q ss_pred             cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380          333 QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS  412 (536)
Q Consensus       333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~  412 (536)
                      +|++ ++|++++.||.|++||+++++.+..+. +...+.+++|+|++ .+|++++.|+.|++||+++.     .......
T Consensus       192 ~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~-----~~~~~~~  263 (337)
T 1gxr_A          192 SNDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKP-----DKYQLHL  263 (337)
T ss_dssp             CTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSS-----CEEEECC
T ss_pred             CCCC-CEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCC-----CeEEEcC
Confidence            9998 899999999999999999998877765 78899999999987 79999999999999999885     3456668


Q ss_pred             ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       413 ~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      |...|.+++|+|++++|++++.||.|++||+.+++......+..    .+.  .+.|+|++++|++++.||.|++|++
T Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~----~v~--~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----SVL--SCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS----CEE--EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCC----cEE--EEEECCCCCEEEEecCCCeEEEEEE
Confidence            99999999999999999999999999999999888775554422    233  3779999999999999999999986

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.4e-36  Score=320.26  Aligned_cols=331  Identities=13%  Similarity=0.060  Sum_probs=259.0

Q ss_pred             cceecccccceeeeecCCCCc-ccccccccccccccccccceEEecccccC-ccccccccCC---ceEEEEEEecCC-cc
Q 009380          176 GFVIKDEFNGFKTCKDEGLGV-GSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPG---RITQMKFLPCSD-VR  249 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~---~I~~v~~~p~~~-~~  249 (536)
                      ...+.+|...|.++.|+|++. .++          +++.||.|++|++... .......|.+   .|++++|+|  + +.
T Consensus       153 ~~~~~~~~~~v~~~~~~~~~~~~l~----------~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~  220 (615)
T 1pgu_A          153 LGEVSGHSQRINACHLKQSRPMRSM----------TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGE  220 (615)
T ss_dssp             EEECCSCSSCEEEEEECSSSSCEEE----------EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCC
T ss_pred             ceeeecCCccEEEEEECCCCCcEEE----------EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCC
Confidence            456678999999999999998 455          4578899999997443 2334567888   999999999  8 99


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEe-c---cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLF-R---THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-  324 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~---~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-  324 (536)
                      +|++|+.||.|++||+.+    ...+..+ .   .|...|.+++|+ ++ .+|++++.|+.|++||+.++.....+... 
T Consensus       221 ~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  294 (615)
T 1pgu_A          221 FVITVGSDRKISCFDGKS----GEFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSKCVQKWTLDK  294 (615)
T ss_dssp             EEEEEETTCCEEEEETTT----CCEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTEEEEEEECCT
T ss_pred             EEEEEeCCCeEEEEECCC----CCEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence            999999999999999987    6777777 6   899999999999 77 99999999999999999988776655433 


Q ss_pred             ----CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC----------------------
Q 009380          325 ----YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR----------------------  378 (536)
Q Consensus       325 ----~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~----------------------  378 (536)
                          ..+.++.|. ++ .++++++.+|.|++||+.+++.+..+.+|...|.+++| |+                      
T Consensus       295 ~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~  371 (615)
T 1pgu_A          295 QQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDH  371 (615)
T ss_dssp             TCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCC
T ss_pred             CcccCceeEEEeC-CC-CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcc
Confidence                678888886 54 79999999999999999988877777777666666665 42                      


Q ss_pred             -----------CCCEEEEEeCCCcEEEEeCCCCCC---------------------------------------------
Q 009380          379 -----------NPNIMATSSTDGTACIWDLRSMAT---------------------------------------------  402 (536)
Q Consensus       379 -----------~~~~l~s~s~dg~i~iwdl~~~~~---------------------------------------------  402 (536)
                                 + ..|++++.|+.|++||+.....                                             
T Consensus       372 ~~~v~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (615)
T 1pgu_A          372 SNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS  450 (615)
T ss_dssp             CSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE
T ss_pred             cCceEEEEECCC-cEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce
Confidence                       2 3444444444444444432100                                             


Q ss_pred             ---------------CC---------CCc--ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380          403 ---------------DK---------PEP--MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       403 ---------------~~---------~~~--~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  456 (536)
                                     ..         ...  .....|...|.+++|+|++++|++++.|+.|++||+.+++.+..+... 
T Consensus       451 ~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-  529 (615)
T 1pgu_A          451 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF-  529 (615)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC-
T ss_pred             EEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecC-
Confidence                           00         001  233468899999999999999999999999999999988776654310 


Q ss_pred             CCCceeeeeEEEEcC----------CCCEEEEEcCCCcEEEEcCCcc-ccceeccCCceeeeeeeEeecCCCCCEEEEEc
Q 009380          457 QTGRWISSFRAIWGW----------DDSCVFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       457 ~~~~~~~~~~~~~s~----------~g~~l~~gs~dg~I~v~d~~~~-~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                       ....+.  .++|+|          ++.+|++|+.|+.|++||+.++ +.+..+.+|...+.  .+.|+| ++. |++++
T Consensus       530 -h~~~v~--~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~--~l~~s~-~~~-l~s~~  602 (615)
T 1pgu_A          530 -RTSKIN--AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN--NLLWET-PST-LVSSG  602 (615)
T ss_dssp             -CSSCEE--EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEE--EEEEEE-TTE-EEEEE
T ss_pred             -CCCcee--EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceE--EEEEcC-CCC-eEEec
Confidence             222333  478999          9999999999999999999998 67888887655544  678888 456 99999


Q ss_pred             cCCeEEEEecC
Q 009380          526 GGGQVYVWTSD  536 (536)
Q Consensus       526 ~Dg~v~iW~~d  536 (536)
                      .||.|++|+++
T Consensus       603 ~d~~v~iw~~~  613 (615)
T 1pgu_A          603 ADACIKRWNVV  613 (615)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCceEEEEeee
Confidence            99999999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.4e-36  Score=329.84  Aligned_cols=334  Identities=15%  Similarity=0.187  Sum_probs=270.1

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEE
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      +.....+.+|.+.|.++.|+|++..++..          ..+|.|.||++... .......|.+.|.+++|+|  ++.+|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~----------~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l   70 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTT----------LYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA--RKNWI   70 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEE----------ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEE----------eCCCEEEEEECCCCceEEEEecCCCcEEEEEEeC--CCCEE
Confidence            34567789999999999999999999854          67899999997543 3344567999999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eE-EEeecCCCceeE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VF-DLVYSSEYAVFS  329 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~-~~~~~~~~~i~~  329 (536)
                      ++|+.||.|++|++.+    +..+..+.+|...|.+++|+|++ .+|++++.||.|++||+.++ .. .....|...|.+
T Consensus        71 ~~~~~dg~i~vw~~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~  145 (814)
T 3mkq_A           71 IVGSDDFRIRVFNYNT----GEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC  145 (814)
T ss_dssp             EEEETTSEEEEEETTT----CCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEE
T ss_pred             EEEeCCCeEEEEECCC----CcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEE
Confidence            9999999999999987    67888999999999999999999 99999999999999999876 43 344568899999


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-CCeEEEEEec--CCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-ARINTIDFNP--RNPNIMATSSTDGTACIWDLRSMATDKPE  406 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p--~~~~~l~s~s~dg~i~iwdl~~~~~~~~~  406 (536)
                      ++|+|.+++.|++++.||.|++||+.++.....+..+. ..+.+++|+|  ++ .+|++++.||.|++||+++++    .
T Consensus       146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~----~  220 (814)
T 3mkq_A          146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS----C  220 (814)
T ss_dssp             EEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTE----E
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc----E
Confidence            99999433899999999999999999988887777554 8999999999  66 699999999999999998753    4


Q ss_pred             cceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE-EEEEcCCCcE
Q 009380          407 PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC-VFIGNMTRTV  485 (536)
Q Consensus       407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs~dg~I  485 (536)
                      ...+..|...|.+++|+|++.+|++++.||.|++||+.+++....+....   ..+  ..++|+|++.. +++.+.++.+
T Consensus       221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~---~~v--~~~~~~~~~~~~~~~~~~~~~~  295 (814)
T 3mkq_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL---ERS--WCIATHPTGRKNYIASGFDNGF  295 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS---SSE--EEEEECTTCGGGEEEEEETTEE
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC---CcE--EEEEEccCCCceEEEEEeCCCE
Confidence            45556799999999999999999999999999999999888777664332   123  34779999873 2444446678


Q ss_pred             EEEcCCccccceeccCC-----------------------------------------ceeeeeeeEeecCCCCCEEEEE
Q 009380          486 EVISPAQRRSVATLQSP-----------------------------------------YISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~~~-----------------------------------------~~~~~~~~~~~~p~~~~~lasg  524 (536)
                      .+|++........+...                                         ........++|+| ++.+|+++
T Consensus       296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~  374 (814)
T 3mkq_A          296 TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVV  374 (814)
T ss_dssp             EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEE
T ss_pred             EEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEe
Confidence            88887654332222100                                         0001124678888 56888888


Q ss_pred             ccCCeEEEEec
Q 009380          525 TGGGQVYVWTS  535 (536)
Q Consensus       525 s~Dg~v~iW~~  535 (536)
                      + ||.+.||++
T Consensus       375 ~-~~~~~i~~~  384 (814)
T 3mkq_A          375 G-DGEYVIYTA  384 (814)
T ss_dssp             E-TTEEEEEET
T ss_pred             c-CCEEEEEEC
Confidence            7 899999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.7e-36  Score=306.34  Aligned_cols=292  Identities=11%  Similarity=0.119  Sum_probs=244.2

Q ss_pred             cccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-------cccccccCCceEEEEEEecC
Q 009380          174 NLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-------ENIARIMPGRITQMKFLPCS  246 (536)
Q Consensus       174 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-------~~~~~~~~~~I~~v~~~p~~  246 (536)
                      .....+.+|.+.|.++.|+|  ..++          +++.||.|++|++....       ......|...|++++|+|  
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~----------s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--   72 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTV----------SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ--   72 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEE----------EEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE--
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEE----------EEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec--
Confidence            34567889999999999998  5555          45789999999986554       445567899999999999  


Q ss_pred             C----c---cEEEEEeCCCcEEEEECCCCCCCCCc-----eEEeccC-----CCCEEEEEEe----cCCCCE-EEEEECC
Q 009380          247 D----V---RMVVAGSKLGNITFWNLDSQQDEDNG-----IYLFRTH-----LGPISGIVTQ----QYCLSK-IFTSCYD  304 (536)
Q Consensus       247 ~----~---~~l~tg~~dg~v~iwd~~~~~~~~~~-----~~~~~~h-----~~~V~~l~~~----~~~~~~-l~s~s~d  304 (536)
                      +    +   .+|++|+.||.|++|++.+    ...     +..+..|     ...|.+++|+    |++ .+ |++++.|
T Consensus        73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~d  147 (397)
T 1sq9_A           73 AIERDAFELCLVATTSFSGDLLFYRITR----EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVK  147 (397)
T ss_dssp             EEETTTEEEEEEEEEETTSCEEEEEEEE----CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETT
T ss_pred             ccccCCccccEEEEEcCCCCEEEEEccC----CcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCC
Confidence            8    8   9999999999999999987    444     7888888     5999999999    998 88 9999999


Q ss_pred             CeEEEEECCC------CeEE------Ee-------ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380          305 GLIRLMDAEK------EVFD------LV-------YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       305 g~I~vwd~~~------~~~~------~~-------~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                      |.|++||+.+      +...      .+       ..|...|.+++|+|++  +|++++.||.|++||+++++.+..+..
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~  225 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFES  225 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEec
Confidence            9999999987      4332      33       3368899999999987  999999999999999999999999998


Q ss_pred             ---c---CCCeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCcceeec-------------ccCceeEEEEc
Q 009380          366 ---H---EARINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEPMKVLS-------------HKRAVHSAYFS  423 (536)
Q Consensus       366 ---h---~~~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~~~~~~-------------~~~~v~~l~~s  423 (536)
                         |   ...|.+++|+|++ .+|++++.|   |.|++||+++++    ....+..             |...|.+++|+
T Consensus       226 ~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  300 (397)
T 1sq9_A          226 QHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFN  300 (397)
T ss_dssp             CC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCC----EEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred             cccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCc----ccceeccCcccccccccccccCCcEEEEEEC
Confidence               9   9999999999987 799999999   999999999853    3444445             99999999999


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC---CC---------------CceeeeeEEEEcCCC----------CE
Q 009380          424 PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN---QT---------------GRWISSFRAIWGWDD----------SC  475 (536)
Q Consensus       424 p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~---~~---------------~~~~~~~~~~~s~~g----------~~  475 (536)
                      |++.+|++++.|+.|++||+.+++.+..+....   ..               ...+  ..++|+|++          .+
T Consensus       301 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v--~~~~~~~~g~~~~~~~~~~~~  378 (397)
T 1sq9_A          301 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV--FDVKFLKKGWRSGMGADLNES  378 (397)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE--EEEEEECTTTSBSTTCTTSCE
T ss_pred             CCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCce--eEEEeccccccccccccccce
Confidence            999999999999999999999988887776110   11               2233  347899998          79


Q ss_pred             EEEEcCCCcEEEEcCCcc
Q 009380          476 VFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~~~  493 (536)
                      |++|+.||.|++|++.++
T Consensus       379 l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          379 LCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEEEETTTEEEEEEEEC-
T ss_pred             EEEecCCCcEEEEEcCCC
Confidence            999999999999999876

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-36  Score=301.40  Aligned_cols=290  Identities=13%  Similarity=0.125  Sum_probs=230.7

Q ss_pred             cccccCCceEEEEEEecCCcc-EEEEEeC---CCcEEEEECCCCCCCCCce-EEeccCCCCEEEEEEecCC--CCEEEEE
Q 009380          229 IARIMPGRITQMKFLPCSDVR-MVVAGSK---LGNITFWNLDSQQDEDNGI-YLFRTHLGPISGIVTQQYC--LSKIFTS  301 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~-~l~tg~~---dg~v~iwd~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~--~~~l~s~  301 (536)
                      +.+.|.+.|++++|+|  ++. ++++|+.   ||.|+||++.+    .... ....+|...|.+++|+|++  +.+|+++
T Consensus        13 ~~~~h~~~v~~~~~~p--~~~~l~~~~s~~~~d~~v~iw~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~   86 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVP--CSAKFVTMGNFARGTGVIQLYEIQH----GDLKLLREIEKAKPIKCGTFGATSLQQRYLATG   86 (357)
T ss_dssp             EEEECSSCEEEEEECT--TSSEEEEEEC--CCCEEEEEEEECS----SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred             hccCCCCceEEEEEcC--CCceEEEecCccCCCcEEEEEeCCC----CcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence            3467999999999999  775 5566766   89999999987    3333 2334799999999999983  3899999


Q ss_pred             ECCCeEEEEECCCCe--EEEeecCCCceeEEEe------cCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCC----
Q 009380          302 CYDGLIRLMDAEKEV--FDLVYSSEYAVFSLSQ------QPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEA----  368 (536)
Q Consensus       302 s~dg~I~vwd~~~~~--~~~~~~~~~~i~~l~~------~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~----  368 (536)
                      +.||.|++||+.++.  ...+..|...|.+++|      +|++ ++|++++.||.|++||+++++ .+..+..|..    
T Consensus        87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  165 (357)
T 3i2n_A           87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR  165 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred             cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence            999999999999875  4455578899999955      6676 799999999999999999987 6777776554    


Q ss_pred             CeEEEE----EecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc---CCCeEEEEeCCCcEEEE
Q 009380          369 RINTID----FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP---SGSSLATTSFDDTIGIW  441 (536)
Q Consensus       369 ~i~~i~----~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp---~g~~l~t~s~dg~I~iw  441 (536)
                      .|.+++    |+|++ .+|++++.||.|++||++++     .......|...|.+++|+|   ++.+|++++.||.|++|
T Consensus       166 ~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNM-----ALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             CEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTT-----EEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             ceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccC-----ceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            899998    67766 79999999999999999985     3455568899999999999   99999999999999999


Q ss_pred             eCCCCCcceEEecc--CCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCccc-------------------cceec
Q 009380          442 SGVNFENTSMIHHN--NQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQRR-------------------SVATL  499 (536)
Q Consensus       442 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~~-------------------~~~~l  499 (536)
                      |+++.+....+...  ......+  ..+.|+|++. +|++|+.||.|++||+..+.                   .+..+
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          240 DMRTQHPTKGFASVSEKAHKSTV--WQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEEEETTTEEEEEEEECCSSCE--EEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             eCcCCCcccceeeeccCCCcCCE--EEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            99887766555311  1122233  3477999998 89999999999999997543                   34555


Q ss_pred             cCCceeeeeeeEeecCCCCCEEE-EEccCCeEEEEecC
Q 009380          500 QSPYISAIPCRFHAHPHQVGTLA-GATGGGQVYVWTSD  536 (536)
Q Consensus       500 ~~~~~~~~~~~~~~~p~~~~~la-sgs~Dg~v~iW~~d  536 (536)
                      .+|...+  ..++|+| ++.+|+ +++.||.|+||++.
T Consensus       318 ~~~~~~v--~~~~~s~-~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          318 TLSTQPI--SSLDWSP-DKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             ECCSSCE--EEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred             ccCCCCe--eEEEEcC-CCCeEEEEecCCCcEEEEECC
Confidence            5554333  4688999 457777 89999999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.8e-36  Score=321.44  Aligned_cols=328  Identities=14%  Similarity=0.135  Sum_probs=267.2

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCc-eEEEEEEecCCccEEEE
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGR-ITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~-I~~v~~~p~~~~~~l~t  253 (536)
                      ..|...|.++.|+|+++.++..          . ++.|.+|++...     ....+..|.+. |++++|+|..++++|++
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~----------~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s   83 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYP----------C-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS   83 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEE----------E-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEe----------c-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEE
Confidence            3578899999999999999865          2 678999998643     44556789999 99999999545789999


Q ss_pred             EeCCCcEEEEECCCCCC----CCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEeecCCC
Q 009380          254 GSKLGNITFWNLDSQQD----EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVYSSEY  325 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~----~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~~~~~  325 (536)
                      |+.||.|++|++.++..    .......+..|...|.+++|+|++ .+|++++.+    +.|++||. ......+..|..
T Consensus        84 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~~  161 (615)
T 1pgu_A           84 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDS-GNSLGEVSGHSQ  161 (615)
T ss_dssp             EETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTT-CCEEEECCSCSS
T ss_pred             ecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEEC-CCcceeeecCCc
Confidence            99999999999964200    036677888999999999999999 999999988    78999993 334455667889


Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC---CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA---RINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~---~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                      .|.+++|+|++..++++++.||.|++||+.+++.+..+..|..   .|.+++|+|+++.+|++++.||.|++||+++++ 
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-  240 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-  240 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-
Confidence            9999999999855899999999999999999999999999999   999999999823799999999999999998853 


Q ss_pred             CCCCccee-e---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEE
Q 009380          403 DKPEPMKV-L---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVF  477 (536)
Q Consensus       403 ~~~~~~~~-~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~  477 (536)
                         ....+ .   .|...|.+++|+ ++.+|++++.|+.|++||+.+++....+.... .....+  ..+.|+ ++.+++
T Consensus       241 ---~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~  313 (615)
T 1pgu_A          241 ---FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ--VGVVAT-GNGRII  313 (615)
T ss_dssp             ---EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE--EEEEEE-ETTEEE
T ss_pred             ---EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce--eEEEeC-CCCeEE
Confidence               33333 3   899999999999 99999999999999999999888877775431 111222  235564 889999


Q ss_pred             EEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          478 IGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       478 ~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +++.|+.|++||+.+++.+..+.+|...+.  .+.| |.    |++++.||.|++|++
T Consensus       314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~--~~~~-~~----l~~~~~dg~i~~w~~  364 (615)
T 1pgu_A          314 SLSLDGTLNFYELGHDEVLKTISGHNKGIT--ALTV-NP----LISGSYDGRIMEWSS  364 (615)
T ss_dssp             EEETTSCEEEEETTEEEEEEEECCCSSCEE--EEET-TT----TEEEETTSCEEETTT
T ss_pred             EEECCCCEEEEECCCCcEEEEEeCCCCCEE--EEEe-cC----cEEECCCCeEEEEEc
Confidence            999999999999999988888877654433  4555 52    666666666666664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1e-36  Score=352.51  Aligned_cols=328  Identities=14%  Similarity=0.174  Sum_probs=280.6

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-------------------------------
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-------------------------------  225 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-------------------------------  225 (536)
                      ..+.+|...|.++.|+|++..++.          ++.||.+++|++...                               
T Consensus       876 ~~~~~h~~~v~~v~~spdg~~l~s----------~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  945 (1249)
T 3sfz_A          876 ADCRGHLSWVHGVMFSPDGSSFLT----------ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG  945 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEE----------EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred             eecCCCccceEEEEECCCCCEEEE----------EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence            456789999999999999998884          477889999986321                               


Q ss_pred             -------ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE
Q 009380          226 -------PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI  298 (536)
Q Consensus       226 -------~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l  298 (536)
                             .......+...|.+++|+|  ++.++++|+.+|.|.+|++.+    ......+.+|...|.+++|+|++ .+|
T Consensus       946 ~~~~~~~~~~~~~~~~~~i~~~~~sp--~g~~l~~g~~~g~i~i~d~~~----~~~~~~~~~h~~~v~~l~~s~dg-~~l 1018 (1249)
T 3sfz_A          946 LQLIAGKTGQIDYLPEAQVSCCCLSP--HLEYVAFGDEDGAIKIIELPN----NRVFSSGVGHKKAVRHIQFTADG-KTL 1018 (1249)
T ss_dssp             EEEEEESSCCEEEECCSCEEEEEECT--TSSEEEEEETTSCCEEEETTT----TSCEEECCCCSSCCCCEEECSSS-SCE
T ss_pred             eEEEecCcceEEEcccCcEEEEEEcC--CCCEEEEEcCCCCEEEEEcCC----CceeeecccCCCceEEEEECCCC-CEE
Confidence                   1111223456899999999  999999999999999999987    67788899999999999999999 999


Q ss_pred             EEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380          299 FTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       299 ~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      ++++.||.|++||+.++.......|...|.+++|++++  .+++++.||.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus      1019 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A         1019 ISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS--RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp             EEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS--EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSS
T ss_pred             EEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC--cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCC
Confidence            99999999999999999988888999999999999975  7899999999999999999999999999999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec----
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH----  454 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~----  454 (536)
                      + .+|++++.||+|++||+.++.    ....+.+|...|++++|+|+|++|++++.||.|++||+.+++....+..    
T Consensus      1097 ~-~~l~s~s~d~~v~iwd~~~~~----~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1171 (1249)
T 3sfz_A         1097 A-TKFSSTSADKTAKIWSFDLLS----PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171 (1249)
T ss_dssp             S-SSCEEECCSSCCCEECSSSSS----CSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC--
T ss_pred             C-CEEEEEcCCCcEEEEECCCcc----eeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccc
Confidence            8 689999999999999998864    4455668999999999999999999999999999999998877655410    


Q ss_pred             --cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          455 --NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       455 --~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                        .......+  ..++|+|+|.+|++++  |.|++||+.+++.+..+..+...+  ..+.|+| ++.+|++++.||.|++
T Consensus      1172 ~~~~~~~~~v--~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i--~~~~~s~-dg~~l~~~~~dg~v~v 1244 (1249)
T 3sfz_A         1172 EGTATHGGWV--TDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNL--KKIHVSP-DFRTYVTVDNLGILYI 1244 (1249)
T ss_dssp             -----CCSCC--CEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCC--CCCEECS-SSCCEEEECTTCCEEE
T ss_pred             ccccccCceE--EEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcc--cEEEECC-CCCEEEEecCCcEEEE
Confidence              01122223  3478999999999986  899999999999988887765443  3578888 6799999999999999


Q ss_pred             Eec
Q 009380          533 WTS  535 (536)
Q Consensus       533 W~~  535 (536)
                      |++
T Consensus      1245 w~l 1247 (1249)
T 3sfz_A         1245 LQV 1247 (1249)
T ss_dssp             ECC
T ss_pred             Eee
Confidence            997

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-36  Score=334.59  Aligned_cols=331  Identities=10%  Similarity=-0.018  Sum_probs=237.7

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCcc------------ccccccCCceEEEEEEecCCcc
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------------NIARIMPGRITQMKFLPCSDVR  249 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------------~~~~~~~~~I~~v~~~p~~~~~  249 (536)
                      |...|.++.|+|++..++          .+..||.|++||+.....            ...+.|.+.|++++|+|. ++.
T Consensus        97 ~~~~V~~v~~sp~g~~l~----------sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~-~~~  165 (902)
T 2oaj_A           97 VPGKITSIDTDASLDWML----------IGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR-DIG  165 (902)
T ss_dssp             CSSCEEEEECCTTCSEEE----------EEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT-EEE
T ss_pred             CCCCEEEEEECCCCCEEE----------EEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC-CCC
Confidence            667899999999999888          457889999999854432            234678999999999993 247


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccC------------------CCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH------------------LGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h------------------~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      +|++|+.||.| +||+.+    ...+..+..|                  ...|.+++|+|++ .+|++++.||+|++||
T Consensus       166 ~l~~g~~dg~v-lWd~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          166 TVLISYEYVTL-TYSLVE----NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWD  239 (902)
T ss_dssp             EEEEECSSCEE-EEETTT----TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred             EEEEEeCCCcE-EEECCC----CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEE
Confidence            89999999999 999987    5566666555                  5789999999998 9999999999999999


Q ss_pred             CCCCeEEEe--e----c-------------CCCceeEEEec----CCCCCEEEEEE------------------------
Q 009380          312 AEKEVFDLV--Y----S-------------SEYAVFSLSQQ----PNNVNTLYFGE------------------------  344 (536)
Q Consensus       312 ~~~~~~~~~--~----~-------------~~~~i~~l~~~----~~~~~~l~~g~------------------------  344 (536)
                      +.+++....  +    .             +...|.+++|+    |++..+|++|+                        
T Consensus       240 ~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~  319 (902)
T 2oaj_A          240 ANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSIT  319 (902)
T ss_dssp             TTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGC
T ss_pred             CCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcccc
Confidence            988766442  1    1             23468888884    33223444443                        


Q ss_pred             ----------------------------------------------------CCCeEEEEECCCCcccee----------
Q 009380          345 ----------------------------------------------------GQGGLNIWDVRSRKSATE----------  362 (536)
Q Consensus       345 ----------------------------------------------------~dg~i~i~d~~~~~~~~~----------  362 (536)
                                                                          .||.|++||+.++.....          
T Consensus       320 s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~  399 (902)
T 2oaj_A          320 SYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSW  399 (902)
T ss_dssp             CHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTT
T ss_pred             chhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccc
Confidence                                                                334556666544422111          


Q ss_pred             -------------------------------EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee-
Q 009380          363 -------------------------------WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV-  410 (536)
Q Consensus       363 -------------------------------~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~-  410 (536)
                                                     +.+|...+.+++|+|++ ++|++|+.|++|++||+.++.......+.. 
T Consensus       400 ~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~  478 (902)
T 2oaj_A          400 LRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVN  478 (902)
T ss_dssp             BTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEE
T ss_pred             cCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEee
Confidence                                           11233334444556766 799999999999999998864211111211 


Q ss_pred             ------ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc-----------------------------------
Q 009380          411 ------LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT-----------------------------------  449 (536)
Q Consensus       411 ------~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~-----------------------------------  449 (536)
                            .+|...|++++|+|+|++||+|+.||+|+|||+.+++..                                   
T Consensus       479 l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (902)
T 2oaj_A          479 LSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAP  558 (902)
T ss_dssp             HHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCC
T ss_pred             chhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCC
Confidence                  178899999999999999999999999999998765310                                   


Q ss_pred             -------eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce-----ecc-CCceeeeeeeEeec--
Q 009380          450 -------SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA-----TLQ-SPYISAIPCRFHAH--  514 (536)
Q Consensus       450 -------~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~-----~l~-~~~~~~~~~~~~~~--  514 (536)
                             ..+.........+..  ++|+|+| +|++|+.|+.|+|||+.+...+.     .+. +|...+  ..++|+  
T Consensus       559 ~~~~~g~~~~~~l~~h~~~V~s--vafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V--~sv~Fs~~  633 (902)
T 2oaj_A          559 TGVRQGFMPSTAVHANKGKTSA--INNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACV--TCIEFVIM  633 (902)
T ss_dssp             TTCSEEEEEEEEECCCSCSEEE--EEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCE--EEEEEEEE
T ss_pred             CCCCCccceeEEEEcCCCcEEE--EEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccce--EEEEEEEE
Confidence                   001111112223444  7799999 99999999999999998876653     232 433333  467787  


Q ss_pred             ---CCC--CCEEEEEccCCeEEEEec
Q 009380          515 ---PHQ--VGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       515 ---p~~--~~~lasgs~Dg~v~iW~~  535 (536)
                         |+.  +.+|++|+.||+|++||+
T Consensus       634 ~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          634 EYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             ECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             ecCCCCCcceEEEEEecCCcEEEEEE
Confidence               731  479999999999999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=287.32  Aligned_cols=280  Identities=14%  Similarity=0.097  Sum_probs=237.5

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ...+.+|.+.|++++| |  ++.+|++|+.||.|++||+.+    ......+..|...|.+++|+|++ .+|++++.||.
T Consensus        11 ~~~l~~h~~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~   82 (313)
T 3odt_A           11 SATLKGHDQDVRDVVA-V--DDSKVASVSRDGTVRLWSKDD----QWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTM   82 (313)
T ss_dssp             EEEECCCSSCEEEEEE-E--ETTEEEEEETTSEEEEEEESS----SEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSC
T ss_pred             HHHhhCCCCCcEEEEe-c--CCCEEEEEEcCCcEEEEECCC----CEEEEEeecCCccEEEEEECCCC-CEEEEecCCCe
Confidence            4456889999999999 8  889999999999999999986    67788888999999999999998 99999999999


Q ss_pred             EEEEECCCC----eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          307 IRLMDAEKE----VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       307 I~vwd~~~~----~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      |++|++...    .......|...|.+++|.  + +++++++.||.|++||  .++.+..+..|...|.+++|+|..+.+
T Consensus        83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           83 INGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK  157 (313)
T ss_dssp             EEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred             EEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence            999998764    244556788999999993  3 6999999999999999  677788888999999999999944579


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      +++++.||.|++||...      ....... |...|.+++|+|++. +++++.|+.|++||+++++.+..+....   ..
T Consensus       158 l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~  227 (313)
T 3odt_A          158 FLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE---SF  227 (313)
T ss_dssp             EEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS---SC
T ss_pred             EEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC---ce
Confidence            99999999999999543      3334444 899999999999998 9999999999999999988877775322   22


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +.  .+.|+|++ .|++++.|+.|++||+.+++.+..+..+...+  ..+.|+| ++. +++++.||.|++|+++
T Consensus       228 i~--~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i--~~~~~~~-~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          228 VY--CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISI--WSVDCMS-NGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EE--EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCE--EEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred             EE--EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceE--EEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence            33  47799999 68899999999999999999988888765443  4678888 445 7789999999999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-35  Score=302.72  Aligned_cols=297  Identities=16%  Similarity=0.157  Sum_probs=238.9

Q ss_pred             eEEecccccCccc-cccccCCceEEEEEEecCCcc-EEEEEeCCCcEEEEEC----CCCCCCCC------ceEEecc---
Q 009380          216 CVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVR-MVVAGSKLGNITFWNL----DSQQDEDN------GIYLFRT---  280 (536)
Q Consensus       216 ~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~----~~~~~~~~------~~~~~~~---  280 (536)
                      .+.+|++...... ....|.+.|++++|+|  ++. +|++|+.||.|++|++    .+    +.      ....+..   
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~----~~~~~~~~~~~~~~~~~~   99 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNP--LDESILAYGEKNSVARLARIVETDQE----GKKYWKLTIIAELRHPFA   99 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECS--SCTTEEEEEETBTEEEEEEEEEC----------CEEEEEEEEEECCCC
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECC--CCCcEEEEecCCceEEEEEEecccCC----cccccccccccccccccc
Confidence            4456776433222 2244569999999999  899 9999999999999999    65    33      2333333   


Q ss_pred             -------CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380          281 -------HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD  353 (536)
Q Consensus       281 -------h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d  353 (536)
                             |...|.+++|+|++ .+|++++.||.|++||........+..|...|.+++|+|++ ++|++++.||.|++||
T Consensus       100 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd  177 (425)
T 1r5m_A          100 LSASSGKTTNQVTCLAWSHDG-NSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWN  177 (425)
T ss_dssp             CC------CBCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEE
T ss_pred             ccccccCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEE
Confidence                   68899999999998 99999999999999996666666667789999999999998 8999999999999999


Q ss_pred             CCCCccceeEeccCCC---------------eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee
Q 009380          354 VRSRKSATEWLLHEAR---------------INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH  418 (536)
Q Consensus       354 ~~~~~~~~~~~~h~~~---------------i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~  418 (536)
                      +.+++.+..+..+...               +.+++|+|++  .+++++.||.|++||++++.    ....+..|...|.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~----~~~~~~~~~~~i~  251 (425)
T 1r5m_A          178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKT----PTGKLIGHHGPIS  251 (425)
T ss_dssp             TTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSS----CSEEECCCSSCEE
T ss_pred             CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCc----eeeeeccCCCceE
Confidence            9999988888877776               9999999964  68899999999999999853    4455568999999


Q ss_pred             EEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccccee
Q 009380          419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVAT  498 (536)
Q Consensus       419 ~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~  498 (536)
                      +++|+|++++|++++.|+.|++||+.+++....+...   ...+  ..+.|+|++ +|++++.|+.|++||+.+++.+..
T Consensus       252 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~i--~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          252 VLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH---SQSI--VSASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC---SSCE--EEEEEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC---CccE--EEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence            9999999999999999999999999988887777422   1223  347799999 999999999999999999988888


Q ss_pred             ccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          499 LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       499 l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +..+...+  ..+.|+| ++.+|++++.||.|+||++
T Consensus       326 ~~~~~~~i--~~~~~s~-~~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          326 SIVDGVPI--FAGRISQ-DGQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             EECTTCCE--EEEEECT-TSSEEEEEETTSCEEEEEC
T ss_pred             cccCCccE--EEEEEcC-CCCEEEEEECCCeEEEEEC
Confidence            87755444  3678888 5699999999999999997

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.4e-35  Score=298.55  Aligned_cols=291  Identities=13%  Similarity=0.063  Sum_probs=233.3

Q ss_pred             ccccceecccccceeeeecCCCC-cccccccccccccccccccceEEecccccCccc-cc--cccCCceEEEEEEecCCc
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLG-VGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IA--RIMPGRITQMKFLPCSDV  248 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~--~~~~~~I~~v~~~p~~~~  248 (536)
                      +.+...+.+|...|.++.|++++ ++++          +++.||.|+||++...... ..  ..|.+.|++++|+|. ++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~----------s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~  131 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVA----------VGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF-NT  131 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEE----------EEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT-EE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEE----------EEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC-CC
Confidence            44456788999999999999999 7777          4578899999998644332 22  359999999999993 46


Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEecc---CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT---HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY  325 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~  325 (536)
                      .+|++|+.||.|++||+..     ..+..+..   |...|.+++|+|++ .+|++++.|+.|++||+.......+..|..
T Consensus       132 ~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~  205 (383)
T 3ei3_B          132 NQLFVSSIRGATTLRDFSG-----SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDGHEIFKEKLHKA  205 (383)
T ss_dssp             EEEEEEETTTEEEEEETTS-----CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTSCEEEEEECSSS
T ss_pred             CEEEEEeCCCEEEEEECCC-----CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCCCEEEEeccCCC
Confidence            8999999999999999984     34445544   45889999999998 999999999999999997666777778999


Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECCC----CccceeEeccCCCeEEEEEec-CCCCEEEEEeCCCcEEEEeCCCC
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS----RKSATEWLLHEARINTIDFNP-RNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~----~~~~~~~~~h~~~i~~i~~~p-~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      .|.+++|+|++..+|++++.||.|++||+++    +..+..+ .|...|.+++|+| ++ .+|++++.|+.|++||++++
T Consensus       206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBT
T ss_pred             cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCC
Confidence            9999999999855999999999999999998    4455555 6999999999999 77 79999999999999999986


Q ss_pred             CCCCCCcceeecc-------c----------CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          401 ATDKPEPMKVLSH-------K----------RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       401 ~~~~~~~~~~~~~-------~----------~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      +.    ...+..|       .          ..+..++|+|++++  +++.|+.|++||+.+++.+..+..... ...+.
T Consensus       284 ~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~-~~~~~  356 (383)
T 3ei3_B          284 SK----PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA-AGIIS  356 (383)
T ss_dssp             TS----CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB-CSCCC
T ss_pred             cc----ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC-CceEE
Confidence            52    2222222       2          34445677777766  778999999999999988777753211 11222


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      .  ++|+|++.+|++|+ |+.|+|||+.+
T Consensus       357 ~--~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          357 L--NKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             E--EEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             E--EEEecCccEEEEec-CCcEEEEecCC
Confidence            2  57999999999997 99999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-35  Score=294.14  Aligned_cols=294  Identities=12%  Similarity=0.113  Sum_probs=250.7

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      ..+.+|...|.++.|+|+++.++.          ++.||.|.+|++... .......|.+.|++++|+|  ++++|++++
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~----------~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~   93 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFS----------CSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC--FTKYCVTGS   93 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEE----------EESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEE----------EeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC--CCCEEEEEe
Confidence            457899999999999999998884          477899999997543 3345577999999999999  999999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCCe------------EE
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKEV------------FD  318 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~~------------~~  318 (536)
                      .||.|++||+.+    ...+..+. |...|.+++|+|++ .+|++++.+     |.|++||+....            ..
T Consensus        94 ~dg~i~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~  167 (369)
T 3zwl_B           94 ADYSIKLWDVSN----GQCVATWK-SPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIH  167 (369)
T ss_dssp             TTTEEEEEETTT----CCEEEEEE-CSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSE
T ss_pred             CCCeEEEEECCC----CcEEEEee-cCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeecccccceee
Confidence            999999999987    56666666 88999999999998 999999999     999999987542            22


Q ss_pred             EeecCCC--ceeEEEecCCCCCEEEEEECCCeEEEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          319 LVYSSEY--AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       319 ~~~~~~~--~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                      ....+..  .+.+++|+|++ ++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++ .+|++++.||.|++|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~  245 (369)
T 3zwl_B          168 KIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLV  245 (369)
T ss_dssp             EEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             eccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEE
Confidence            3334444  89999999998 8999999999999999998 67788888999999999999987 799999999999999


Q ss_pred             eCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--------------cEEEEeCCCCCcceEEeccCCCCce
Q 009380          396 DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--------------TIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      |++++     .......+...+.+++|+|++.++++++.++              .+++||..+++....+....   ..
T Consensus       246 d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~  317 (369)
T 3zwl_B          246 DVSTL-----QVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF---GP  317 (369)
T ss_dssp             ETTTC-----CEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS---SC
T ss_pred             ECCCC-----ceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc---Cc
Confidence            99985     3445556889999999999999999999988              89999999988877764322   22


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      +.  .+.|+|++++|++++.||.|++|++..+.....+.
T Consensus       318 v~--~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  354 (369)
T 3zwl_B          318 LN--TVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKYD  354 (369)
T ss_dssp             EE--EEEECTTSSEEEEEETTSEEEEEEECHHHHTCCCH
T ss_pred             EE--EEEECCCCCEEEEEcCCCeEEEEECccccchhHHH
Confidence            33  37799999999999999999999999876655543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=5.6e-36  Score=307.60  Aligned_cols=294  Identities=18%  Similarity=0.260  Sum_probs=228.4

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC-------CCCceEEeccCC------------CCEEEEEEec
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD-------EDNGIYLFRTHL------------GPISGIVTQQ  292 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~-------~~~~~~~~~~h~------------~~V~~l~~~~  292 (536)
                      .+.+.|++++|+|  ++.+||+|+.||.|+||++.+...       .......+.+|.            ..|.+++|+|
T Consensus        26 ~~~~~V~~v~~s~--~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           26 AEADIISTVEFNH--SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             CGGGSEEEEEECS--SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             cccCcEEEEEECC--CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            4678999999999  999999999999999999986321       112477888998            8899999999


Q ss_pred             CCC-CEEEEEECCCeEEEEECCCCeEE-----------------------------------------EeecCCCceeEE
Q 009380          293 YCL-SKIFTSCYDGLIRLMDAEKEVFD-----------------------------------------LVYSSEYAVFSL  330 (536)
Q Consensus       293 ~~~-~~l~s~s~dg~I~vwd~~~~~~~-----------------------------------------~~~~~~~~i~~l  330 (536)
                      ++. .+|++++.|+.|++||+.++...                                         ...+|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            863 58999999999999999764331                                         124688999999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCC-Cccce-------eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRS-RKSAT-------EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT  402 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~-------~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~  402 (536)
                      +|+|++ ++|++| .||.|++||+++ ++.+.       .+..|...|.+++|+|+++++|++|+.||.|++||++++..
T Consensus       184 ~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          184 SINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            999988 789988 899999999984 33343       25589999999999998767999999999999999998652


Q ss_pred             CCCCcceeecccC------------ceeEEEEccCCCeEEEEeCCCcEEEEeCCC-CCcceEEeccCCCCc---------
Q 009380          403 DKPEPMKVLSHKR------------AVHSAYFSPSGSSLATTSFDDTIGIWSGVN-FENTSMIHHNNQTGR---------  460 (536)
Q Consensus       403 ~~~~~~~~~~~~~------------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~---------  460 (536)
                      .......+..|..            .|.+++|+|+|.+|++++. +.|++||+++ ++.+..+........         
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTS
T ss_pred             ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccc
Confidence            2212344445654            8999999999999999998 9999999987 777776653221110         


Q ss_pred             -eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc--------------------------------eeee
Q 009380          461 -WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY--------------------------------ISAI  507 (536)
Q Consensus       461 -~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~--------------------------------~~~~  507 (536)
                       ....+.++|+|++.+|++|+.||.|++||+.+++.+ .+..+.                                ... 
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  418 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK-  418 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC-
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCc-
Confidence             001233789999999999999999999999988654 222111                                111 


Q ss_pred             eeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          508 PCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       508 ~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      ...++||| ++.+||+++.++ +++|.
T Consensus       419 i~~~~~~p-~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          419 ILHTAWHP-KENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CCEEEECS-SSSEEEEECSSC-EEEEE
T ss_pred             eeEEEECC-CCCEEEEEecce-eeeec
Confidence            24689999 569999998876 77775

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.4e-36  Score=298.12  Aligned_cols=292  Identities=12%  Similarity=0.096  Sum_probs=235.5

Q ss_pred             ceecccccceeeeecCCC---CcccccccccccccccccccceEEecccccCcc-ccccc-----cCCceEEEEEEecCC
Q 009380          177 FVIKDEFNGFKTCKDEGL---GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARI-----MPGRITQMKFLPCSD  247 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~-----~~~~I~~v~~~p~~~  247 (536)
                      .+..+|...|.++.|+|+   +..+.         +....++.|.+|++..... .....     |.+.|++++|+|  +
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~---------~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~   80 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLV---------FATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY--D   80 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEE---------EEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE--C
T ss_pred             EeecCCCCceEEEEEecccCCCCceE---------EEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc--C
Confidence            355689999999999985   33111         1234556899999853322 22232     557899999999  6


Q ss_pred             ----ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEECCCeEEEEECCCCeEEEee-
Q 009380          248 ----VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEKEVFDLVY-  321 (536)
Q Consensus       248 ----~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-  321 (536)
                          +.+|++|+.||.|++||+.+    ...+..+.+|...|.+++|+| ++ .+|++++.||.|++||+.++.....+ 
T Consensus        81 ~~~~~~~l~~~~~dg~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           81 SNTSHPLLAVAGSRGIIRIINPIT----MQCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             TTTCCEEEEEEETTCEEEEECTTT----CCEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCCCCEEEEecCCCEEEEEEchh----ceEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEec
Confidence                67999999999999999987    678888999999999999999 66 99999999999999999998777665 


Q ss_pred             ---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec----------------------------cCCCe
Q 009380          322 ---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL----------------------------HEARI  370 (536)
Q Consensus       322 ---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----------------------------h~~~i  370 (536)
                         .|...|.+++|+|++ ++|++++.||.|++||+++++.+..+..                            |...|
T Consensus       156 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  234 (366)
T 3k26_A          156 GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV  234 (366)
T ss_dssp             STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred             ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence               688999999999988 8999999999999999998766544433                            99999


Q ss_pred             EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC----------CCcceeecccCceeEEEEccC--CCeEEEEeCCCcE
Q 009380          371 NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK----------PEPMKVLSHKRAVHSAYFSPS--GSSLATTSFDDTI  438 (536)
Q Consensus       371 ~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~----------~~~~~~~~~~~~v~~l~~sp~--g~~l~t~s~dg~I  438 (536)
                      .+++|+  + .+|++++.||.|++||+++.....          ........|...|++++|+|+  +.+|++++.||.|
T Consensus       235 ~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i  311 (366)
T 3k26_A          235 DCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL  311 (366)
T ss_dssp             CEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred             EEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence            999999  3 699999999999999998764200          113344468899999999999  9999999999999


Q ss_pred             EEEeCCCCCcce----EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          439 GIWSGVNFENTS----MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       439 ~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      ++||+.+++...    .+... .....+.  .++|+|++++|++++.||.|++||+.
T Consensus       312 ~vwd~~~~~~~~~~~~~~~~~-~~~~~v~--~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          312 YVWDLEVEDPHKAKCTTLTHH-KCGAAIR--QTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECCSSSGGGCEEEEECCT-TCCSCEE--EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEECCCCCCccccceEEccc-ccCCceE--EEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999999887654    22211 1122333  47899999999999999999999975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-35  Score=285.34  Aligned_cols=299  Identities=13%  Similarity=0.151  Sum_probs=245.9

Q ss_pred             ccccccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCC
Q 009380          169 ACKDENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSD  247 (536)
Q Consensus       169 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~  247 (536)
                      ..+.+++...+.+|.+.|.++.| +++..++          +++.||.|++|++.... ......|.+.|.+++|+|  +
T Consensus         4 ~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~----------s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~   70 (313)
T 3odt_A            4 PFTGYQLSATLKGHDQDVRDVVA-VDDSKVA----------SVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS--E   70 (313)
T ss_dssp             -CCCCEEEEEECCCSSCEEEEEE-EETTEEE----------EEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET--T
T ss_pred             ccccHHHHHHhhCCCCCcEEEEe-cCCCEEE----------EEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC--C
Confidence            33456677889999999999999 9998887          45788999999985433 344567899999999999  9


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCce
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAV  327 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i  327 (536)
                      +.+|++|+.||.|++|++..... ...+..+.+|...|.++.|  ++ ++|++++.||.|++|| ..........|...+
T Consensus        71 ~~~l~~~~~dg~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~-~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v  145 (313)
T 3odt_A           71 KELLLFGGKDTMINGVPLFATSG-EDPLYTLIGHQGNVCSLSF--QD-GVVISGSWDKTAKVWK-EGSLVYNLQAHNASV  145 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTCCTT-SCC-CEECCCSSCEEEEEE--ET-TEEEEEETTSEEEEEE-TTEEEEEEECCSSCE
T ss_pred             CCEEEEecCCCeEEEEEeeecCC-CCcccchhhcccCEEEEEe--cC-CEEEEEeCCCCEEEEc-CCcEEEecccCCCce
Confidence            99999999999999999986432 4567788999999999999  34 7999999999999999 334445556788999


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE  406 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~  406 (536)
                      .+++|.|...+++++++.||.|++||  ..+....+.. |...|.+++|+|++ . +++++.||.|++||+++++    .
T Consensus       146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~----~  217 (313)
T 3odt_A          146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD----V  217 (313)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC----E
T ss_pred             eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh----h
Confidence            99999984448999999999999999  4556666766 89999999999977 3 8999999999999999853    4


Q ss_pred             cceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380          407 PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVE  486 (536)
Q Consensus       407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~  486 (536)
                      ...+..|...|++++|+|++ .|++++.||.|++||+.+++....+.....   .+  ..+.|+|++. +++++.|+.|+
T Consensus       218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~i--~~~~~~~~~~-~~~~~~dg~i~  290 (313)
T 3odt_A          218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI---SI--WSVDCMSNGD-IIVGSSDNLVR  290 (313)
T ss_dssp             EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS---CE--EEEEECTTSC-EEEEETTSCEE
T ss_pred             hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc---eE--EEEEEccCCC-EEEEeCCCcEE
Confidence            55566899999999999999 699999999999999999988777754321   23  3477999998 56788999999


Q ss_pred             EEcCCccccceecc
Q 009380          487 VISPAQRRSVATLQ  500 (536)
Q Consensus       487 v~d~~~~~~~~~l~  500 (536)
                      +|++.+++.+....
T Consensus       291 iw~~~~~~~~~~~~  304 (313)
T 3odt_A          291 IFSQEKSRWASEDE  304 (313)
T ss_dssp             EEESCGGGCCC---
T ss_pred             EEeCCCCceeehhh
Confidence            99999987665543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.4e-36  Score=307.90  Aligned_cols=281  Identities=11%  Similarity=0.072  Sum_probs=229.9

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ..+++++|+|  ++.+|++|+.||.|++|++.+    ......+..| ..+....|++++ .+|++++.||.|++||+.+
T Consensus        57 ~~~~~~~~s~--~g~~l~~~~~d~~v~i~d~~~----~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~  128 (420)
T 3vl1_A           57 DAGKGNTFEK--VGSHLYKARLDGHDFLFNTII----RDGSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNF  128 (420)
T ss_dssp             BCCTTCEEEE--EETTEEEEEETTEEEEEECCS----EETTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTS
T ss_pred             ccccceeeee--cCCeEEEEEcCCcEEEEEecc----cceeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCC
Confidence            3466899999  999999999999999999987    3344444455 444555788888 9999999999999999999


Q ss_pred             CeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                      +.....+ .|...|.+++|+|++ ++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++ .+|++++.||.|+
T Consensus       129 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~  206 (420)
T 3vl1_A          129 NLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIR  206 (420)
T ss_dssp             CEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEE
T ss_pred             cceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEE
Confidence            8877764 789999999999998 799999999999999999999999999999999999999987 7999999999999


Q ss_pred             EEeCCCCCCCCCCcceee---cc---------------------cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380          394 IWDLRSMATDKPEPMKVL---SH---------------------KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT  449 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~---~~---------------------~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~  449 (536)
                      +||+++++    ....+.   .|                     ...+.+++|+|++++|++++.||.|++||+++++..
T Consensus       207 iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~  282 (420)
T 3vl1_A          207 LWECGTGT----TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT  282 (420)
T ss_dssp             EEETTTTE----EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred             EeECCCCc----eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            99999853    222222   13                     345555666889999999999999999999988776


Q ss_pred             eEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCcccc-ceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380          450 SMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGG  527 (536)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~~~-~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D  527 (536)
                      ..+...  ....+  ..++|+|++. +|++|+.||.|++||+.+++. +..+..++...+.. +.+.  ++.+|++++.|
T Consensus       283 ~~~~~~--~~~~v--~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-~~~~--~~~~l~s~~~d  355 (420)
T 3vl1_A          283 IQLPSK--FTCSC--NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINN-VYFA--AGALFVSSGFD  355 (420)
T ss_dssp             EEECCT--TSSCE--EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEE-EEEE--TTEEEEEETTT
T ss_pred             EEcccc--cCCCc--eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceE-EEeC--CCCEEEEecCC
Confidence            666331  12223  3478999998 999999999999999998754 77787766666533 4444  45799999999


Q ss_pred             CeEEEEecC
Q 009380          528 GQVYVWTSD  536 (536)
Q Consensus       528 g~v~iW~~d  536 (536)
                      |.|+||++.
T Consensus       356 ~~v~iw~~~  364 (420)
T 3vl1_A          356 TSIKLDIIS  364 (420)
T ss_dssp             EEEEEEEEC
T ss_pred             ccEEEEecc
Confidence            999999963

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.4e-36  Score=308.76  Aligned_cols=298  Identities=14%  Similarity=0.103  Sum_probs=229.2

Q ss_pred             cccccceecccccceeeeecCCC-CcccccccccccccccccccceEEecccccCccc---cccccCCceEEEEEEecCC
Q 009380          172 DENLGFVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN---IARIMPGRITQMKFLPCSD  247 (536)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~---~~~~~~~~I~~v~~~p~~~  247 (536)
                      .+.+.....+|...|.++.|+|. +.+|+          +++.||.|+|||+......   ...+|.+.|++|+|+|. +
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~la----------sGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~  176 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVA----------VGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-N  176 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEE----------EEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-C
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEE----------EEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-C
Confidence            34455667889999999999995 45666          4688999999998654322   23579999999999984 6


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEec---cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR---THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE  324 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~  324 (536)
                      +.+|++|+.||+|+|||+..     .....+.   .+...+.+++|+|++ .+|++|+.||.|++||++......+..|.
T Consensus       177 ~~~l~s~s~D~~v~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~  250 (435)
T 4e54_B          177 TNQFYASSMEGTTRLQDFKG-----NILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHK  250 (435)
T ss_dssp             TTEEEEECSSSCEEEEETTS-----CEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCS
T ss_pred             CCEEEEEeCCCEEEEeeccC-----CceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEeccc
Confidence            78999999999999999975     2233332   334568899999998 99999999999999999887777777899


Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee---EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE---WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA  401 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~---~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~  401 (536)
                      ..|.+++|+|++..+|++|+.|+.|++||+++.+....   ..+|...|++++|+|++ .+|++++.||.|+|||++++.
T Consensus       251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~  329 (435)
T 4e54_B          251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD  329 (435)
T ss_dssp             SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS
T ss_pred             ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc
Confidence            99999999999878999999999999999998765433   35799999999999987 799999999999999999864


Q ss_pred             CCCCCcceeecccC------ceeEEEEccCCCeEEEEeC------------CCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          402 TDKPEPMKVLSHKR------AVHSAYFSPSGSSLATTSF------------DDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       402 ~~~~~~~~~~~~~~------~v~~l~~sp~g~~l~t~s~------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                          .......|..      .+..+.|+|++.++++++.            ++.|++||..+++.+..+....  ...+.
T Consensus       330 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~--~~~v~  403 (435)
T 4e54_B          330 ----CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE--SSGIS  403 (435)
T ss_dssp             ----SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS--CCCCC
T ss_pred             ----cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC--CCcEE
Confidence                2333333321      2344567777766666542            3579999999988777663221  11222


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      .+ .+|+|+|.+|++|+ |+.|+||++.+++.
T Consensus       404 s~-~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          404 SL-NEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CE-EEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EE-EEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            21 35999999999886 78999999998864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-36  Score=309.05  Aligned_cols=295  Identities=15%  Similarity=0.171  Sum_probs=242.7

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEeccccc-----CccccccccCCceEEEEEEecCC-ccEEEEE
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-----KPENIARIMPGRITQMKFLPCSD-VRMVVAG  254 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-----~~~~~~~~~~~~I~~v~~~p~~~-~~~l~tg  254 (536)
                      .|...|.++.|++++..++.          ++.||.|++|++..     ........|.+.|++++|+|  + +.+|++|
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~----------~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~  132 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAG----------ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA--KQDNVLASG  132 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEE----------EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS--SSTTBEEEE
T ss_pred             ecCCceEEEEECCCCCeEEE----------EccCCeEEEeecccccccccchhhccCCccceEEEEEcC--CCCCEEEEE
Confidence            57889999999999999884          46789999999865     24445677999999999999  7 8999999


Q ss_pred             eCCCcEEEEECCCCCC-----CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC------
Q 009380          255 SKLGNITFWNLDSQQD-----EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS------  323 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~------  323 (536)
                      +.||.|++||+.+...     .......+..|...|.+++|+|++..+|++++.||.|++||++++.....+..      
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  212 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSG  212 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSC
T ss_pred             cCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccc
Confidence            9999999999987431     01122334679999999999999558999999999999999999876655543      


Q ss_pred             -CCceeEEEecCCCCCEEEEEECCC---eEEEEECCCC-ccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380          324 -EYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRSR-KSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       324 -~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~-~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                       ...|.+++|+|++..++++++.|+   .|++||++++ ..+..+. +|...|.+++|+|.++.+|++++.||.|++||+
T Consensus       213 ~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~  292 (416)
T 2pm9_A          213 IKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP  292 (416)
T ss_dssp             CCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred             cCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence             688999999999878999999999   9999999986 5677787 899999999999944479999999999999999


Q ss_pred             CCCCCCCCCcceeecccCceeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCcceEEe---------------ccC-----
Q 009380          398 RSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLATTSFDDTIGIWSGVNFENTSMIH---------------HNN-----  456 (536)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t~s~dg~I~iwd~~~~~~~~~~~---------------~~~-----  456 (536)
                      ++++    ....+..|...|.+++|+|++ .+|++++.|+.|++||+.+........               +..     
T Consensus       293 ~~~~----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (416)
T 2pm9_A          293 ESAE----QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK  368 (416)
T ss_dssp             SSCC----EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred             CCCc----cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence            9853    455566899999999999998 899999999999999998765433210               000     


Q ss_pred             ------------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          457 ------------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       457 ------------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                                  .....+  ..++|+|+|++|++|+.|+.|+||++.+.
T Consensus       369 ~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          369 EKPSVFHLQAPTWYGEPS--PAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SCCCSSCCCCCSTTCCCS--CCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             cccccccccCCccccCCc--cceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                        011111  24779999999999999999999998764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.1e-35  Score=290.79  Aligned_cols=285  Identities=12%  Similarity=0.126  Sum_probs=237.3

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCC-EEEEEECCCeE
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLS-KIFTSCYDGLI  307 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~I  307 (536)
                      +...|.+.|++++|+|  ++.+|++|+.||.|+||++..... ......+..|...|.+++|+|++ . +|++++.||.|
T Consensus         6 ~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i   81 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEI   81 (342)
T ss_dssp             CSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCE
T ss_pred             cccCCCCcEEEEEEcC--CCCEEEEEcCCCeEEEEEeCCCCc-cccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeE
Confidence            3468999999999999  999999999999999999986321 11355666899999999999998 8 99999999999


Q ss_pred             EEEEC-CCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCC---------CccceeEeccCCCeEEEEE
Q 009380          308 RLMDA-EKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS---------RKSATEWLLHEARINTIDF  375 (536)
Q Consensus       308 ~vwd~-~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~---------~~~~~~~~~h~~~i~~i~~  375 (536)
                      ++||+ .++....+..  |...|.+++|+| + ++|++++.||.|++||+++         ++++..+. |...|.+++|
T Consensus        82 ~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  158 (342)
T 1yfq_A           82 LKVDLIGSPSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT  158 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred             EEEEeccCCceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence            99999 9888887888  999999999999 5 8999999999999999998         77777776 8999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCC------C
Q 009380          376 NPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNF------E  447 (536)
Q Consensus       376 ~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~------~  447 (536)
                      +|++   +++++.|+.|++||+++ +.  .........|...|.+++|+| ++.+|++++.||.|++|++...      +
T Consensus       159 ~~~~---l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~  233 (342)
T 1yfq_A          159 NSSR---LIVGMNNSQVQWFRLPLCED--DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS  233 (342)
T ss_dssp             CSSE---EEEEESTTEEEEEESSCCTT--CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred             cCCc---EEEEeCCCeEEEEECCcccc--ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc
Confidence            9854   89999999999999987 53  112234447889999999999 9999999999999999999876      5


Q ss_pred             cceEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          448 NTSMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       448 ~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      ....+......    .....+..++|+|++++|++|+.||.|++||+.+++.+..+.+||...+ ..++  | ++.+|++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v-~~~~--~-~~~~l~s  309 (342)
T 1yfq_A          234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-VKIA--C-SDNILCL  309 (342)
T ss_dssp             TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE-EEEE--E-CSSEEEE
T ss_pred             cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCc-eEec--C-CCCeEEE
Confidence            56665432210    0011233478999999999999999999999999999999988744444 2344  5 6799999


Q ss_pred             EccCCe
Q 009380          524 ATGGGQ  529 (536)
Q Consensus       524 gs~Dg~  529 (536)
                      |+.||.
T Consensus       310 ~s~Dg~  315 (342)
T 1yfq_A          310 ATSDDT  315 (342)
T ss_dssp             EEECTH
T ss_pred             EecCCc
Confidence            999998

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.5e-36  Score=296.31  Aligned_cols=299  Identities=16%  Similarity=0.202  Sum_probs=232.8

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccc---cceEEecccccCccc--cccccCCceEEEEEEecCC---
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEV---GSCVDIGSLTLKPEN--IARIMPGRITQMKFLPCSD---  247 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~---dg~v~lw~~~~~~~~--~~~~~~~~I~~v~~~p~~~---  247 (536)
                      ..++.+|.+.|.++.|+|++..++..         ++.   ||.|.||++......  ....|.+.|++++|+|  +   
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~---------~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~   79 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTM---------GNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGA--TSLQ   79 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEE---------EC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTT--CCTT
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEe---------cCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcC--CCCC
Confidence            44568899999999999999765533         333   899999998654432  2236899999999999  6   


Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCC-ceEEeccCCCCEEEEEE------ecCCCCEEEEEECCCeEEEEECCCCe-EEE
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDN-GIYLFRTHLGPISGIVT------QQYCLSKIFTSCYDGLIRLMDAEKEV-FDL  319 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~~~h~~~V~~l~~------~~~~~~~l~s~s~dg~I~vwd~~~~~-~~~  319 (536)
                      +.+|++|+.||.|++||+.+    .. .+..+.+|...|.++.|      +|++ .+|++++.||.|++||+.++. ...
T Consensus        80 ~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~  154 (357)
T 3i2n_A           80 QRYLATGDFGGNLHIWNLEA----PEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVA  154 (357)
T ss_dssp             TCCEEEEETTSCEEEECTTS----CSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSE
T ss_pred             CceEEEecCCCeEEEEeCCC----CCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcce
Confidence            69999999999999999997    44 78889999999999965      5677 899999999999999999865 333


Q ss_pred             -eecC----CCceeEEE----ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEec---CCCCEEEEEe
Q 009380          320 -VYSS----EYAVFSLS----QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNP---RNPNIMATSS  387 (536)
Q Consensus       320 -~~~~----~~~i~~l~----~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p---~~~~~l~s~s  387 (536)
                       +..+    ...+.+++    |++++ ++|++++.||.|++||+++++.... ..|...|.+++|+|   ++ .+|++++
T Consensus       155 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~l~~~~  231 (357)
T 3i2n_A          155 NMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISM-NKLVATS  231 (357)
T ss_dssp             EECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSC-CEEEEEE
T ss_pred             eccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCC-CEEEEEC
Confidence             3233    33788888    67777 8999999999999999999887444 56899999999999   66 7999999


Q ss_pred             CCCcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCcce---------------
Q 009380          388 TDGTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFENTS---------------  450 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~~~---------------  450 (536)
                      .||.|++||+++....... ......|...|++++|+|++. +|++++.||.|++||+.......               
T Consensus       232 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          232 LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcccccccc
Confidence            9999999999885421110 011227999999999999998 89999999999999998654331               


Q ss_pred             -EEeccCCCCceeeeeEEEEcCCCCEEE-EEcCCCcEEEEcCCcccc
Q 009380          451 -MIHHNNQTGRWISSFRAIWGWDDSCVF-IGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       451 -~~~~~~~~~~~~~~~~~~~s~~g~~l~-~gs~dg~I~v~d~~~~~~  495 (536)
                       .+.........+.  .++|+|++++|+ +++.|+.|++||+.+.+.
T Consensus       312 ~~~~~~~~~~~~v~--~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          312 SLLQNVTLSTQPIS--SLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEEEEECCSSCEE--EEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ceeeccccCCCCee--EEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence             1111111222333  478999999998 799999999999987643

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-35  Score=286.71  Aligned_cols=254  Identities=15%  Similarity=0.174  Sum_probs=212.7

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEeccccc---CccccccccCCceEEEEEEecCCccEEEEE
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---KPENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      ++.+|.+.|.++.|+++|+.++          +++.|+.|+||++..   .....+.+|.+.|++++|+|..++.+|++|
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~la----------s~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~   73 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMA----------TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC   73 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEE----------EEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEE----------EEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEE
Confidence            5789999999999999999998          458899999999853   234456789999999999873247899999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCCe---EEEeecCCCceeE
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKEV---FDLVYSSEYAVFS  329 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~~---~~~~~~~~~~i~~  329 (536)
                      +.||+|+|||+.++.  ...+..+.+|...|.+++|+|+  + .+|++++.|+.|++||+.++.   ......|...|.+
T Consensus        74 s~D~~v~iWd~~~~~--~~~~~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           74 SYDGKVMIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             ETTTEEEEEEBSSSC--BCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             cCCCEEEEEEcCCCc--eEEEEEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCceeeeeeecccCccce
Confidence            999999999998632  2456778889999999999997  6 899999999999999998752   3455678899999


Q ss_pred             EEecCCC------------CCEEEEEECCCeEEEEECCCCc----cceeEeccCCCeEEEEEecCC--CCEEEEEeCCCc
Q 009380          330 LSQQPNN------------VNTLYFGEGQGGLNIWDVRSRK----SATEWLLHEARINTIDFNPRN--PNIMATSSTDGT  391 (536)
Q Consensus       330 l~~~~~~------------~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~i~~~p~~--~~~l~s~s~dg~  391 (536)
                      ++|+|+.            ..+|++|+.|+.|++||+++++    ....+.+|...|.+++|+|++  ..+|++++.|++
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence            9999973            3689999999999999998876    456788999999999999985  479999999999


Q ss_pred             EEEEeCCCCCCCCC-CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          392 ACIWDLRSMATDKP-EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       392 i~iwdl~~~~~~~~-~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      |+|||++....... .......|...|.+++|+|+|++|++++.|+.|+||+..
T Consensus       231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            99999987421100 111113678899999999999999999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.7e-34  Score=293.22  Aligned_cols=277  Identities=16%  Similarity=0.196  Sum_probs=230.9

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE--eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL--FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~--~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ++.|+|++  + ++|++|. |++|+|||+.+    +.....  +.+|...|++|+|+|++ .+|++|+.||+|++||+++
T Consensus       108 ~~~l~wS~--~-n~lAvgl-d~tV~lWd~~t----g~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          108 LNLVDWSS--G-NVLAVAL-DNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             CBCEEECT--T-SEEEEEE-TTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred             ceeEEECC--C-CEEEEEe-CCEEEEEECCC----CCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCC
Confidence            56799997  4 4777776 89999999998    555544  45788899999999999 9999999999999999999


Q ss_pred             CeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          315 EVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       315 ~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      ++... ..+|...+.++++++   .+|++|+.|+.+.+||.+... .+..+.+|...+..+.|+|++ .++++++.|+.|
T Consensus       179 ~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v  254 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLV  254 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             CcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-Ceeeeeeccccc
Confidence            87654 446888999988864   689999999999999998754 467788999999999999987 799999999999


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCC-CeEEE--EeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG-SSLAT--TSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g-~~l~t--~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      ++||+..++...........|...|.+++|+|.+ .++++  |+.|++|++||+.++.....+....    .  ...+.|
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~----~--v~~~~~  328 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS----Q--VCSILW  328 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS----C--EEEEEE
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc----c--eeeeee
Confidence            9999998764444455666899999999999965 45554  3579999999999998887775433    1  233778


Q ss_pred             cCCCCEEEEEc--CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          470 GWDDSCVFIGN--MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       470 s~~g~~l~~gs--~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++++..+++++  .|+.|+|||+.+++++..+.+|...+  ..++|+| ++.+|++|+.||+|+|||+
T Consensus       329 ~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V--~~l~~sp-dg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          329 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV--LSLTMSP-DGATVASAAADETLRLWRC  393 (420)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred             cCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence            99999887764  78999999999999999999876554  4688999 6799999999999999997

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.7e-35  Score=296.02  Aligned_cols=295  Identities=13%  Similarity=0.014  Sum_probs=238.7

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEEEE
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      .+..|.+.|.++.|+|+++.++.          ++.+|.|.+|++...   .......|.+.|++++|+|  ++.+|++|
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~----------~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~   70 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAI----------CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP--DSNRIVTC   70 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEE----------ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET--TTTEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEE----------EeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC--CCCEEEEE
Confidence            34568899999999999998884          467899999998655   4455678999999999999  99999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEe-ecCCCceeE
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLV-YSSEYAVFS  329 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~-~~~~~~i~~  329 (536)
                      +.||.|++||+.+..  ......+..|...|.+++|+|++ .+|++++.|+.|++||+..+.    .... ..|...|.+
T Consensus        71 ~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~  147 (372)
T 1k8k_C           71 GTDRNAYVWTLKGRT--WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  147 (372)
T ss_dssp             ETTSCEEEEEEETTE--EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             cCCCeEEEEECCCCe--eeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence            999999999997621  12234457799999999999998 999999999999999998764    2222 457889999


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECC------------------CCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVR------------------SRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~------------------~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ++|+|++ ++|++++.||.|++||++                  .++.+..+..|...|.+++|+|++ .+|++++.||.
T Consensus       148 ~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~  225 (372)
T 1k8k_C          148 LDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDST  225 (372)
T ss_dssp             EEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTE
T ss_pred             EEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCE
Confidence            9999988 899999999999999954                  567778888899999999999987 79999999999


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC--CC--cceE----------------
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN--FE--NTSM----------------  451 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~--~~--~~~~----------------  451 (536)
                      |++||+++++    ....+..|...|.+++|+|++.+|+++ .|+.|++|++.+  ++  ....                
T Consensus       226 i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (372)
T 1k8k_C          226 VCLADADKKM----AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE  300 (372)
T ss_dssp             EEEEEGGGTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred             EEEEECCCCc----eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence            9999999853    455566888999999999999988777 899999999977  31  0000                


Q ss_pred             ------------------EeccCCCCceeeeeEEEEc-CCC---CEEEEEcCCCcEEEEcCCccccc
Q 009380          452 ------------------IHHNNQTGRWISSFRAIWG-WDD---SCVFIGNMTRTVEVISPAQRRSV  496 (536)
Q Consensus       452 ------------------~~~~~~~~~~~~~~~~~~s-~~g---~~l~~gs~dg~I~v~d~~~~~~~  496 (536)
                                        ..........+.  .++|. ++|   .+|++|+.||.|++|++.+++.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~  365 (372)
T 1k8k_C          301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVS--QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA  365 (372)
T ss_dssp             HHHHCCCCC---------CCCSSSSSSCEE--EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred             hhhhcccccccccCccccccccccccCCcc--eeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence                              000011222333  35554 676   99999999999999999876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-35  Score=295.30  Aligned_cols=273  Identities=15%  Similarity=0.192  Sum_probs=224.8

Q ss_pred             cccccceEEecccccCccc-ccc-ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          210 KIEVGSCVDIGSLTLKPEN-IAR-IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~-~~~-~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      .++.||.|.+|++...... ... .|.+.|++++|+|  ++.+|++|+.||.|++||+.+    ...+..+.+|...|.+
T Consensus       108 ~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~  181 (401)
T 4aez_A          108 AVALERNVYVWNADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLGNGLVDIYDVES----QTKLRTMAGHQARVGC  181 (401)
T ss_dssp             EEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEETTSCEEEEETTT----CCEEEEECCCSSCEEE
T ss_pred             EEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECCCCeEEEEECcC----CeEEEEecCCCCceEE
Confidence            3468899999998554322 222 3788999999999  999999999999999999987    6788899999999999


Q ss_pred             EEEecCCCCEEEEEECCCeEEEEECCC-C-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380          288 IVTQQYCLSKIFTSCYDGLIRLMDAEK-E-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~dg~I~vwd~~~-~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                      ++|+  + .+|++++.||.|++||++. . .......|...|.+++|+|++ .+|++|+.||.|++||+++++.+..+..
T Consensus       182 ~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~  257 (401)
T 4aez_A          182 LSWN--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTN  257 (401)
T ss_dssp             EEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECC
T ss_pred             EEEC--C-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecC
Confidence            9994  3 7999999999999999984 3 345566789999999999987 8999999999999999999999999999


Q ss_pred             cCCCeEEEEEecCCCCEEEEEe--CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcEEEE
Q 009380          366 HEARINTIDFNPRNPNIMATSS--TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTIGIW  441 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s--~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I~iw  441 (536)
                      |...|.+++|+|++..++++++  .|+.|++||++++     .......+...|.+++|+|++.+|++++  .||.|++|
T Consensus       258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-----~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~  332 (401)
T 4aez_A          258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-----ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIW  332 (401)
T ss_dssp             CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-----CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEE
T ss_pred             CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-----CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEE
Confidence            9999999999998888999876  7999999999985     3455556888999999999999999954  89999999


Q ss_pred             eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      |+.++.............   .+..+.|+|++.+|++++.||.|++|++.+++.+....
T Consensus       333 ~~~~~~~~~~~~~~~h~~---~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          333 SYSSSGLTKQVDIPAHDT---RVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEETTEEEEEEEEECCSS---CCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             ecCCccceeEEEecCCCC---CEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            998865554433222111   23347899999999999999999999999988776543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-34  Score=292.35  Aligned_cols=279  Identities=18%  Similarity=0.212  Sum_probs=226.8

Q ss_pred             ccCCc--eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          232 IMPGR--ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       232 ~~~~~--I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      .|...  +.++.|++    ..+++++.||.|++|++.+    +.....+.. |...|.+++|+|++ .+|++++.||.|+
T Consensus        89 ~~~~~~~~~~~~~s~----~~l~~~~~d~~v~lw~~~~----~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~  159 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN----LNVVAVALERNVYVWNADS----GSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVD  159 (401)
T ss_dssp             TCCCCTTCBCEEECT----TSEEEEEETTEEEEEETTT----CCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred             CCcCCceEEEEeecC----CCEEEEECCCeEEEeeCCC----CcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEE
Confidence            44444  44455544    5588888999999999987    555555554 88999999999998 9999999999999


Q ss_pred             EEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          309 LMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       309 vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      +||+.++.... +..|...|.+++|++   ++|++|+.||.|++||++. ...+..+..|...|.+++|+|++ .+|++|
T Consensus       160 iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~  235 (401)
T 4aez_A          160 IYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG-LQLASG  235 (401)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred             EEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC-CEEEEE
Confidence            99999876554 447889999999943   6999999999999999994 56678888999999999999977 799999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC-eEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS-SLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      +.||.|++||++++.    ....+..|...|.+++|+|++. ++++++  .|+.|++||+.+++....+.+..    .+.
T Consensus       236 ~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~----~v~  307 (401)
T 4aez_A          236 GNDNVVQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS----QVT  307 (401)
T ss_dssp             ETTSCEEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS----CEE
T ss_pred             eCCCeEEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC----cEE
Confidence            999999999999843    4445568999999999999765 555544  69999999999998888775432    233


Q ss_pred             eeEEEEcCCCCEEEE--EcCCCcEEEEcCCcccccee--ccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          464 SFRAIWGWDDSCVFI--GNMTRTVEVISPAQRRSVAT--LQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~--gs~dg~I~v~d~~~~~~~~~--l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                        .++|+|++.+|++  |+.||.|++|++.++.....  +.+|...+  ..+.|+| ++.+|++++.||.|+||++.
T Consensus       308 --~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v--~~~~~s~-dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          308 --SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV--LYSALSP-DGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             --EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCC--CEEEECT-TSSEEEEECTTSEEEEEECC
T ss_pred             --EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCE--EEEEECC-CCCEEEEEeCCCcEEEEECC
Confidence              4789999999999  55899999999988654443  44544333  4678999 67999999999999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=291.02  Aligned_cols=334  Identities=13%  Similarity=0.148  Sum_probs=231.6

Q ss_pred             ccceecccccceeeeecCC-CCcccccccccccccccccccceEEecccccCccccc--------------cccCCceEE
Q 009380          175 LGFVIKDEFNGFKTCKDEG-LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA--------------RIMPGRITQ  239 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~--------------~~~~~~I~~  239 (536)
                      ...++.+|.+.|.++.|+| ++..++.          ++.||.|.+|++........              ..|.+.|++
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  104 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLS----------GGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET  104 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEE----------EETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEE
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEE----------EcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEE
Confidence            3456788999999999999 9998884          47789999999865433222              249999999


Q ss_pred             EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC--CEEEEEECCCeEEEEECCCCeE
Q 009380          240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL--SKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~--~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ++|+|. ++.+|++++.||.|++||+.+    ......+. +...+.++.|++.+.  .++++++.||.|++||+.++..
T Consensus       105 ~~~~~~-~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  178 (408)
T 4a11_B          105 VQWYPH-DTGMFTSSSFDKTLKVWDTNT----LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC  178 (408)
T ss_dssp             EEECTT-CTTCEEEEETTSEEEEEETTT----TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred             EEEccC-CCcEEEEEeCCCeEEEeeCCC----Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence            999994 557999999999999999997    45555554 778899999999652  4999999999999999998765


Q ss_pred             EE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCc-cceeE---------------eccCCCeEEEEEecCCC
Q 009380          318 DL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRK-SATEW---------------LLHEARINTIDFNPRNP  380 (536)
Q Consensus       318 ~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~-~~~~~---------------~~h~~~i~~i~~~p~~~  380 (536)
                      .. +..|...|.+++|+|++..+|++|+.||.|++||++++. .+..+               ..|...|.+++|+|++ 
T Consensus       179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-  257 (408)
T 4a11_B          179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-  257 (408)
T ss_dssp             CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-
T ss_pred             eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-
Confidence            44 445889999999999986689999999999999998765 33333               5688999999999977 


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG  459 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  459 (536)
                      .+|++++.||.|++||+++++.......... .....+........+..+++++.|+.|++||+.+++.+..+....   
T Consensus       258 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---  334 (408)
T 4a11_B          258 LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY---  334 (408)
T ss_dssp             SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS---
T ss_pred             CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC---
Confidence            7999999999999999998652211111111 111222222233345667888889999999999988887774221   


Q ss_pred             ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ..+.  .++|+|++.+|++|+.||.|++|++.+++.+.........     ..+.|.....+.+++.|+.+++|+.
T Consensus       335 ~~v~--~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~W~~  403 (408)
T 4a11_B          335 KTVD--CCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-----SQLNPAFEDAWSSSDEEGGTSAWSH  403 (408)
T ss_dssp             SCEE--EEEEETTTTEEEEEETTSCEEEEEECC-------------------------------------------
T ss_pred             CeEE--EEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-----cccccccceeecccCccCceeecCC
Confidence            2233  3789999999999999999999999999877655432221     2333434467778889999999974

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.1e-33  Score=274.52  Aligned_cols=277  Identities=16%  Similarity=0.190  Sum_probs=226.5

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe--ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF--RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      +++|+||+  ++ +||+|. |++|+|||+.+    +..+..+  .+|...|++++|+|++ ++|++|+.||+|++||+++
T Consensus        28 ~~~l~WS~--~~-~lAvg~-D~tV~iWd~~t----g~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           28 LNLVDWSS--GN-VLAVAL-DNSVYLWSASS----GDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             CBCEEECT--TS-EEEEEE-TTEEEEEETTT----CCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTT
T ss_pred             ceEEEECC--CC-EEEEEe-CCEEEEEECCC----CCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCC
Confidence            46799998  65 777765 89999999998    5555544  5788899999999999 9999999999999999999


Q ss_pred             CeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          315 EVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       315 ~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      ++.... ..|...+.++.+.+   .++++++.++.+.+|+...... +..+.+|...+..+.+++++ .+|++++.||.|
T Consensus        99 ~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i  174 (318)
T 4ggc_A           99 QKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLV  174 (318)
T ss_dssp             TEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred             ceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcce
Confidence            876544 46777777766653   6899999999999999987644 67778999999999999987 799999999999


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeE---EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL---ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l---~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      ++||+++++...........+...|.++.++|++..+   ++++.++.|++||...........+...    +  ..+.|
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~----v--~~~~~  248 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ----V--CSILW  248 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC----E--EEEEE
T ss_pred             eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee----e--eeeee
Confidence            9999998764444455566788999999999976533   3566789999999988776665544321    2  23678


Q ss_pred             cCCCCEEEEE--cCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          470 GWDDSCVFIG--NMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       470 s~~g~~l~~g--s~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++++..++++  +.|+.|+|||+.+++++.++.+|...+  ..++|+| ++.+|++|+.||+|+|||+
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V--~~l~~sp-dg~~l~S~s~D~~v~iWd~  313 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV--LSLTMSP-DGATVASAAADETLRLWRC  313 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence            8998887765  478999999999999999999876544  4688999 6799999999999999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.8e-34  Score=315.79  Aligned_cols=292  Identities=16%  Similarity=0.204  Sum_probs=246.9

Q ss_pred             CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC
Q 009380          225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD  304 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d  304 (536)
                      .....+..|.+.|++++|+|  ++.+|++|+.||.|+|||+.+    +..+..+.+|..+|.+++|+|++ .+|++++.|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp--~~~~la~~~~~g~v~iwd~~~----~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d   76 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHP--TEPWVLTTLYSGRVEIWNYET----QVEVRSIQVTETPVRAGKFIARK-NWIIVGSDD   76 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECS--SSSEEEEEETTSEEEEEETTT----TEEEEEEECCSSCEEEEEEEGGG-TEEEEEETT
T ss_pred             ccceeeecCCCceEEEEECC--CCCEEEEEeCCCEEEEEECCC----CceEEEEecCCCcEEEEEEeCCC-CEEEEEeCC
Confidence            34556789999999999999  999999999999999999987    67888999999999999999999 999999999


Q ss_pred             CeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCE
Q 009380          305 GLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       305 g~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      |.|++||+.++.... +..|...|.+++|+|++ .+|++++.||.|++||+.++ .....+.+|...|.+++|+|.++.+
T Consensus        77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~  155 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (814)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCE
Confidence            999999999887654 44588999999999998 79999999999999999987 5677788999999999999944479


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG  459 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  459 (536)
                      |++++.||.|++||+..+.    ...... .+...+.+++|+|  ++.+|++++.||.|++||+.+++....+....   
T Consensus       156 l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~---  228 (814)
T 3mkq_A          156 FASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM---  228 (814)
T ss_dssp             EEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS---
T ss_pred             EEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC---
Confidence            9999999999999998753    333444 4558999999999  99999999999999999999888777664321   


Q ss_pred             ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ..+.  .++|+|++.+|++++.||.|++||+.+++.+..+..+....  ..++|+|.....+++++.|+.+.+|++
T Consensus       229 ~~v~--~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          229 SNVS--FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS--WCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             SCEE--EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSE--EEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             CCEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcE--EEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            2233  37799999999999999999999999998888887765444  467889854344455555677888875

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.6e-34  Score=285.09  Aligned_cols=295  Identities=17%  Similarity=0.130  Sum_probs=219.2

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec--CCCCEEEEEECCC
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ--YCLSKIFTSCYDG  305 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~--~~~~~l~s~s~dg  305 (536)
                      .+..+|.+.|++++|+|  ++.+|++|+.||.|++|++............+.+|...|.+++|+|  ++ .+|++++.||
T Consensus         5 ~~~~gH~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg   81 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDF--YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDK   81 (351)
T ss_dssp             CEECCCSSCEEEEEECS--SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTS
T ss_pred             ccCcccccceeEEEEcC--CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCC
Confidence            45688999999999999  9999999999999999999864322246677889999999999999  46 9999999999


Q ss_pred             eEEEEECCCCe----------EEEeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCccceeEe---------
Q 009380          306 LIRLMDAEKEV----------FDLVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKSATEWL---------  364 (536)
Q Consensus       306 ~I~vwd~~~~~----------~~~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---------  364 (536)
                      .|++||+.++.          ......|...|.+++|+|+  + ++|++++.||.|++||+++++.+..+.         
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999998752          3445578899999999998  6 899999999999999999887765543         


Q ss_pred             ----ccCCCeEEEEEecC--CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC----CeEEEEeC
Q 009380          365 ----LHEARINTIDFNPR--NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG----SSLATTSF  434 (536)
Q Consensus       365 ----~h~~~i~~i~~~p~--~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g----~~l~t~s~  434 (536)
                          .|...+.+++|+|+  ++.++++++.|+.+.+|+.....  ......+.+|...|++++|+|++    ++|++++.
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence                57889999999997  34799999999999888877642  11133444799999999999998    89999999


Q ss_pred             CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEE----EcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380          435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI----GNMTRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~----gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      ||.|++||++.............     ......+++....+..    +.....+.+|+....+.+..+.+|...+  ..
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~  311 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEESLT-----NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV--WS  311 (351)
T ss_dssp             TSCEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCE--EE
T ss_pred             CCeEEEEeCCCCcCccccCCccc-----ceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE--EE
Confidence            99999999986644333211110     0011122233333333    3344567777777778888888765554  46


Q ss_pred             EeecCCCCCEEEEEccCCeEEEEecC
Q 009380          511 FHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++|+| ++.+|++|+.||.|+||+++
T Consensus       312 ~~~s~-~~~~l~s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          312 VSWNL-TGTILSSAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEECS-SSCCEEEEETTSCEEEEEEC
T ss_pred             EEEcC-CCCEEEEecCCCcEEEEecC
Confidence            88998 56999999999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3e-35  Score=288.42  Aligned_cols=257  Identities=14%  Similarity=0.164  Sum_probs=206.2

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc---cccccccCCceEEEEEEecCCccEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP---ENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~---~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      ++.++.+|.+.|.++.|+++|+.++          +++.|+.|+|||+....   ...+.+|.+.|++++|+|..++.+|
T Consensus         5 ~~~~~~~H~~~V~~v~~s~~g~~la----------sgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l   74 (316)
T 3bg1_A            5 INTVDTSHEDMIHDAQMDYYGTRLA----------TCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNIL   74 (316)
T ss_dssp             ---------CCEEEEEECGGGCEEE----------EEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCE
T ss_pred             eeeecccccCeEEEeeEcCCCCEEE----------EEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEE
Confidence            3456789999999999999999988          45889999999985432   2346789999999999863247899


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCCe-E---EEeecCCC
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKEV-F---DLVYSSEY  325 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~~-~---~~~~~~~~  325 (536)
                      ++|+.|++|+|||+.++.  ......+.+|...|.+++|+|+  + .+|++|+.|++|++||+..+. .   .....|..
T Consensus        75 ~s~s~D~~v~iWd~~~~~--~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~  151 (316)
T 3bg1_A           75 ASCSYDRKVIIWREENGT--WEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQWEVKKINNAHTI  151 (316)
T ss_dssp             EEEETTSCEEEECCSSSC--CCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred             EEEECCCEEEEEECCCCc--ceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence            999999999999998632  2456778899999999999998  5 899999999999999998753 2   22346778


Q ss_pred             ceeEEEecCCC----------------CCEEEEEECCCeEEEEECCCC---ccceeEeccCCCeEEEEEecCC---CCEE
Q 009380          326 AVFSLSQQPNN----------------VNTLYFGEGQGGLNIWDVRSR---KSATEWLLHEARINTIDFNPRN---PNIM  383 (536)
Q Consensus       326 ~i~~l~~~~~~----------------~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~~i~~i~~~p~~---~~~l  383 (536)
                      .|.+++|+|+.                ..+|++|+.|+.|++||++..   +.+..+.+|...|.+++|+|++   ..+|
T Consensus       152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l  231 (316)
T 3bg1_A          152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI  231 (316)
T ss_dssp             CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred             CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence            99999999973                258999999999999999765   3566788999999999999975   3689


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      ++|+.||+|++||+............+..|...|.+++|+|++++|++++.|++|+||+..
T Consensus       232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            9999999999999987321111223345789999999999999999999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-34  Score=287.19  Aligned_cols=259  Identities=17%  Similarity=0.184  Sum_probs=213.7

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECC
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYD  304 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~d  304 (536)
                      ..++.+|.+.|++++|+|  ++.+|++|+.||.|+||++....  ...+..+.+|...|.+++|+++  + .+|++++.|
T Consensus         4 ~~~~~~h~~~v~~~~~s~--~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d   78 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYD   78 (379)
T ss_dssp             -CCEEECCCCEEEEEECS--SSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETT
T ss_pred             cEEecCCcccEEEEEEcC--CCCEEEEEECCCcEEEEecCCCc--ceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccC
Confidence            345689999999999999  99999999999999999997421  5667788999999999999876  6 999999999


Q ss_pred             CeEEEEECCCCe---EEEeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEec
Q 009380          305 GLIRLMDAEKEV---FDLVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNP  377 (536)
Q Consensus       305 g~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p  377 (536)
                      |.|++||+.++.   ......|...|.+++|+|+  + .+|++++.||.|++||++++..  ...+..|...|.+++|+|
T Consensus        79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~  157 (379)
T 3jrp_A           79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  157 (379)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECC
T ss_pred             CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcC
Confidence            999999999885   3344468899999999998  6 8999999999999999998744  445668999999999999


Q ss_pred             C------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC---CCeEEEEeCCCcEEEEe
Q 009380          378 R------------NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS---GSSLATTSFDDTIGIWS  442 (536)
Q Consensus       378 ~------------~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~t~s~dg~I~iwd  442 (536)
                      .            ++.+|++++.||.|++||++...........+..|...|.+++|+|+   +.+|++++.||.|++||
T Consensus       158 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd  237 (379)
T 3jrp_A          158 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  237 (379)
T ss_dssp             CC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred             ccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence            4            34799999999999999998754211122344579999999999999   89999999999999999


Q ss_pred             CCCCCcceEEeccC--CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          443 GVNFENTSMIHHNN--QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       443 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      +.+...........  .....  ...++|+|++++|++++.||.|++|++...
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          238 QDNEQGPWKKTLLKEEKFPDV--LWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             ESSTTSCCEEEESSSSCCSSC--EEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCCCCccceeeeeccccCCCc--EEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            98865433222111  12223  344789999999999999999999998743

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.7e-35  Score=293.35  Aligned_cols=248  Identities=12%  Similarity=0.036  Sum_probs=199.6

Q ss_pred             ecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEEEEe
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      ...+...|.++.|+|+++.++.          ++.||.|+||++...   ....+..|.+.|++++|+|  ++++|++|+
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~----------~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s   74 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVT----------TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP--KSNRIVTCS   74 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEEC----------CCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT--TTCCEEEEE
T ss_pred             EecCCCcEEEEEECCCCCEEEE----------ecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC--CCCEEEEEe
Confidence            4556778999999999998884          467899999998653   4455678999999999999  999999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEeec-CCCceeEE
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYS-SEYAVFSL  330 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~~~-~~~~i~~l  330 (536)
                      .||.|++||+.+.. .......+..|...|.+++|+|++ .+|++++.|+.|++||++++.    ...+.. |...|.++
T Consensus        75 ~d~~v~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           75 QDRNAYVYEKRPDG-TWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             TTSSEEEC-------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             CCCeEEEEEcCCCC-ceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            99999999998732 123677788999999999999998 999999999999999999875    344555 89999999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCC------------------CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRS------------------RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~------------------~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      +|+|++ ++|++++.||.|++||++.                  ++++..+ .|...|.+++|+|++ .+|++++.||.|
T Consensus       153 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i  229 (377)
T 3dwl_C          153 DWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSV  229 (377)
T ss_dssp             EECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEE
T ss_pred             EEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcE
Confidence            999998 8999999999999999853                  3445555 899999999999987 699999999999


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      ++||++++.........+..|...|.+++|+|++++|++++.++.+ +|+..
T Consensus       230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999998642111145566899999999999999999888766655 77654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.7e-34  Score=283.41  Aligned_cols=287  Identities=10%  Similarity=0.091  Sum_probs=213.9

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCC-------cEEEEECCCCCCCC------CceEEeccCCCCEEEEEEecCCCCEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLG-------NITFWNLDSQQDED------NGIYLFRTHLGPISGIVTQQYCLSKIFT  300 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg-------~v~iwd~~~~~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~l~s  300 (536)
                      .-+|++++|+|  ++.+|++|+.+.       .|++|++.......      .....+.+|...|.+++++.   +.+++
T Consensus        14 g~PV~sv~fs~--dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLN--NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK---GIILV   88 (365)
T ss_dssp             SSCEEEEEEEE--TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET---TEEEE
T ss_pred             CCCEEEEEEeC--CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC---CEEEE
Confidence            34799999999  999999997543       59999998643210      11235678888898887764   56666


Q ss_pred             EE-----------CCCeEEEEECCCCe--EEEe--------ecCCCceeEEEecCCCCCEEEEEE--CCCeEEEEECCCC
Q 009380          301 SC-----------YDGLIRLMDAEKEV--FDLV--------YSSEYAVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRSR  357 (536)
Q Consensus       301 ~s-----------~dg~I~vwd~~~~~--~~~~--------~~~~~~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~~  357 (536)
                      ++           .|+.+++|++.+..  ....        ..++..+.+++|+|++ +++++++  .|++|++||+.++
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~~  167 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSDL  167 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTTT
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCCC
Confidence            53           57889999986542  1111        1234568899999999 6665544  6899999999999


Q ss_pred             ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC-
Q 009380          358 KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD-  436 (536)
Q Consensus       358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg-  436 (536)
                      +++..+. |...|.+|+|+|++ .++++++. +.+++|+..++..  ........|...|.+++|+|++.++++++.|+ 
T Consensus       168 ~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~--~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~  242 (365)
T 4h5i_A          168 TEKFEIE-TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSC--IARKTDFDKNWSLSKINFIADDTVLIAASLKKG  242 (365)
T ss_dssp             EEEEEEE-CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCE--EEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred             cEEEEeC-CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcc--eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence            9888886 78889999999988 78998885 5577777766431  01122336888999999999999999999887 


Q ss_pred             ---cEEEEeCCCCCcceEE-eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEe
Q 009380          437 ---TIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFH  512 (536)
Q Consensus       437 ---~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~  512 (536)
                         .+++|++......... .........+.  +++|+|+|++|++|+.|+.|+|||+.+++++.++...|...+ ..++
T Consensus       243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~--~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V-~~v~  319 (365)
T 4h5i_A          243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGIT--SMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAI-TEVT  319 (365)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEEESSCSCEE--EEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCE-EEEE
T ss_pred             ceeEEeecccccceecceeeeeecCCCCCeE--eEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCE-EEEE
Confidence               5888988765432221 11111222333  478999999999999999999999999999888644344444 4789


Q ss_pred             ecCCCCCEEEEEccCCeEEEEec
Q 009380          513 AHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       513 ~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      |+| ++.+||+|+.|++|+||++
T Consensus       320 fSp-dg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          320 ISP-DSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             ECT-TSCEEEEEETTSEEEEEEC
T ss_pred             ECC-CCCEEEEEeCCCeEEEEEc
Confidence            999 6799999999999999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.8e-35  Score=290.97  Aligned_cols=295  Identities=9%  Similarity=0.023  Sum_probs=220.5

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCccc-----------cccccCCceEEEEEEecCCccEEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-----------IARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-----------~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      -.|.++.|+||+++|++...+..   +.+.++.|+||++......           .+..|.+.|.+++++    ++.++
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~---~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~   87 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEG---NNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIIL   87 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSS---SSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEE
T ss_pred             CCEEEEEEeCCCcEEEEECCCcc---ccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEE
Confidence            35899999999999996521111   1234568999997544321           234567788888765    45666


Q ss_pred             EE-----------eCCCcEEEEECCCCCCCCCceEE-----eccCCCCEEEEEEecCCCCEEEEE--ECCCeEEEEECCC
Q 009380          253 AG-----------SKLGNITFWNLDSQQDEDNGIYL-----FRTHLGPISGIVTQQYCLSKIFTS--CYDGLIRLMDAEK  314 (536)
Q Consensus       253 tg-----------~~dg~v~iwd~~~~~~~~~~~~~-----~~~h~~~V~~l~~~~~~~~~l~s~--s~dg~I~vwd~~~  314 (536)
                      +|           +.|+++++|++............     ...+...+.+++|+||| ++|+++  +.|++|++||+.+
T Consensus        88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~~d~~i~iwd~~~  166 (365)
T 4h5i_A           88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSKVPAIMRIIDPSD  166 (365)
T ss_dssp             EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESCSSCEEEEEETTT
T ss_pred             EEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECCCCCEEEEeECCC
Confidence            65           45788999998764221111111     12345568999999999 877654  4789999999999


Q ss_pred             CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--EeccCCCeEEEEEecCCCCEEEEEeCCC--
Q 009380          315 EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--WLLHEARINTIDFNPRNPNIMATSSTDG--  390 (536)
Q Consensus       315 ~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--~~~h~~~i~~i~~~p~~~~~l~s~s~dg--  390 (536)
                      +.......|...|.+++|+|++ .++++++.+ .+.+|+..+++.+..  ...|...|.+++|+|++ .++++++.|+  
T Consensus       167 ~~~~~~~~~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~  243 (365)
T 4h5i_A          167 LTEKFEIETRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGK  243 (365)
T ss_dssp             TEEEEEEECSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSC
T ss_pred             CcEEEEeCCCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcc
Confidence            9988888899999999999998 788888755 677888887776543  34688899999999988 6888888777  


Q ss_pred             --cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380          391 --TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       391 --~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                        .+++||+............+.+|...|++++|+|+|++|++|+.|++|+|||+.+++++..+..  .+...++  .++
T Consensus       244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~--gH~~~V~--~v~  319 (365)
T 4h5i_A          244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ--AHSFAIT--EVT  319 (365)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT--SSSSCEE--EEE
T ss_pred             eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC--cccCCEE--EEE
Confidence              5888988764311112234557899999999999999999999999999999999888776521  1122334  488


Q ss_pred             EcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          469 WGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      |+|||++|++|+.|++|+||++...
T Consensus       320 fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          320 ISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            9999999999999999999999643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9e-34  Score=291.11  Aligned_cols=287  Identities=14%  Similarity=0.178  Sum_probs=223.9

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCc------------cccccccC------------Cc
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP------------ENIARIMP------------GR  236 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~------------~~~~~~~~------------~~  236 (536)
                      .|.+.|.++.|+|+|..++.          ++.||.|+||++....            ....+.|.            +.
T Consensus        26 ~~~~~V~~v~~s~~g~~la~----------g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLAT----------GDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEE----------EETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             cccCcEEEEEECCCCCEEEE----------EcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc
Confidence            46789999999999999984          5788999999986443            33456787            88


Q ss_pred             eEEEEEEecCCc--cEEEEEeCCCcEEEEECCCCCCC----------C-------------------------CceEE-e
Q 009380          237 ITQMKFLPCSDV--RMVVAGSKLGNITFWNLDSQQDE----------D-------------------------NGIYL-F  278 (536)
Q Consensus       237 I~~v~~~p~~~~--~~l~tg~~dg~v~iwd~~~~~~~----------~-------------------------~~~~~-~  278 (536)
                      |++++|+|  ++  .+|++|+.||.|++|++......          +                         ..... .
T Consensus        96 V~~l~~~~--~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           96 INKIRWLP--QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCEEEECC--CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             eEEEEEcC--CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            99999999  76  79999999999999998752100          0                         00112 3


Q ss_pred             ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEE--------eecCCCceeEEEecCCCCCEEEEEECCCeE
Q 009380          279 RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDL--------VYSSEYAVFSLSQQPNNVNTLYFGEGQGGL  349 (536)
Q Consensus       279 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~--------~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i  349 (536)
                      .+|...|.+++|+|++ .+|++| .|+.|++||+.+ +....        ...|...|.+++|+|++.++|++|+.||.|
T Consensus       174 ~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          174 NAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred             cCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence            6899999999999998 999998 799999999994 43333        336889999999999987899999999999


Q ss_pred             EEEECCCCcc----ceeEeccCC------------CeEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCcceeec
Q 009380          350 NIWDVRSRKS----ATEWLLHEA------------RINTIDFNPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKVLS  412 (536)
Q Consensus       350 ~i~d~~~~~~----~~~~~~h~~------------~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~~  412 (536)
                      ++||+++++.    +..+..|..            .|.+++|+|++ .+|++++. +.|++||++. +.    ....+..
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~----~~~~~~~  325 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENR----PVETYQV  325 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSS----CSCCEES
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcc----ccceeec
Confidence            9999999886    678888876            89999999987 78999998 9999999987 32    3334445


Q ss_pred             ccCc---------------eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC---------------------
Q 009380          413 HKRA---------------VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN---------------------  456 (536)
Q Consensus       413 ~~~~---------------v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~---------------------  456 (536)
                      |...               +..++|+|++.+|++++.||.|++||+.+++......+..                     
T Consensus       326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (447)
T 3dw8_B          326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK  405 (447)
T ss_dssp             CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred             cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence            5432               3349999999999999999999999998876653222210                     


Q ss_pred             --------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          457 --------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       457 --------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                              ....  .++.++|+|++.+|++++.++ +++|..
T Consensus       406 ~~~~~~~~~~~~--~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          406 DEISVDSLDFNK--KILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             TCEEGGGCCTTS--CCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             ccccccccccCC--ceeEEEECCCCCEEEEEecce-eeeecc
Confidence                    0111  234488999999999998775 777764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-33  Score=280.39  Aligned_cols=293  Identities=13%  Similarity=0.117  Sum_probs=235.1

Q ss_pred             CccccccccCCceEEEEEEecCC---ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE
Q 009380          225 KPENIARIMPGRITQMKFLPCSD---VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS  301 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~---~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~  301 (536)
                      .+....+.|.+.|++++|+|  +   |.+|++|+.||.|+||++.+..  ......+.+|...|.+++|+|++ .+|+++
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~--~~~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~  104 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSP--PTLPGNFLIAGSWANDVRCWEVQDSG--QTIPKAQQMHTGPVLDVCWSDDG-SKVFTA  104 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECC--TTSSSEEEEEEETTSEEEEEEECTTS--CEEEEEEEECSSCEEEEEECTTS-SEEEEE
T ss_pred             ceeEeccCCCCceEEEEEcC--CCCCceEEEEECCCCcEEEEEcCCCC--ceeEEEeccccCCEEEEEECcCC-CEEEEE
Confidence            34456788999999999999  7   6999999999999999998631  33347888999999999999998 999999


Q ss_pred             ECCCeEEEEECCCCeEEEeecCCCceeEEEe--cCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380          302 CYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQ--QPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       302 s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~--~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~  379 (536)
                      +.||.|++||+.++.......|...|.+++|  ++++ ++|++++.||.|++||+++++.+..+..+. .+.++.+.+  
T Consensus       105 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--  180 (368)
T 3mmy_A          105 SCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--  180 (368)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--
T ss_pred             cCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--
Confidence            9999999999999998888899999999999  8887 789999999999999999999998888654 677777775  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCe----EEEEeCCCcEEEEeCCCCC---cce
Q 009380          380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSS----LATTSFDDTIGIWSGVNFE---NTS  450 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~----l~t~s~dg~I~iwd~~~~~---~~~  450 (536)
                       ..+++++.++.+++||++...    ......  .+...+.++.+.++...    +++++.|+.|++||+....   ...
T Consensus       181 -~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~  255 (368)
T 3mmy_A          181 -PMAVVATAERGLIVYQLENQP----SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF  255 (368)
T ss_dssp             -TEEEEEEGGGCEEEEECSSSC----EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred             -CeeEEEeCCCcEEEEEecccc----chhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence             477888889999999998743    122211  34456666777665554    9999999999999998773   344


Q ss_pred             EEeccCCC-------CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          451 MIHHNNQT-------GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       451 ~~~~~~~~-------~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      .+......       .....+..++|+|++++|++|+.||.|++||+.+++.+..+..|...+  ..++|+| ++.+|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~s~-~g~~l~~  332 (368)
T 3mmy_A          256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI--SACCFNH-NGNIFAY  332 (368)
T ss_dssp             EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE--EEEEECT-TSSCEEE
T ss_pred             eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc--eEEEECC-CCCeEEE
Confidence            44321110       000023447899999999999999999999999999999888765444  4688999 6799999


Q ss_pred             EccCCeEEEEe
Q 009380          524 ATGGGQVYVWT  534 (536)
Q Consensus       524 gs~Dg~v~iW~  534 (536)
                      |+.|+..+.|+
T Consensus       333 ~s~d~~~~~~~  343 (368)
T 3mmy_A          333 ASSYDWSKGHE  343 (368)
T ss_dssp             EECCCSTTCGG
T ss_pred             Eeccccccccc
Confidence            99988655544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-34  Score=283.88  Aligned_cols=252  Identities=15%  Similarity=0.179  Sum_probs=199.3

Q ss_pred             cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCe
Q 009380          229 IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGL  306 (536)
Q Consensus       229 ~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~  306 (536)
                      +..+|.+.|++++|+|  ++++|++|+.|++|+|||+.++.  ...+..+.+|.+.|.+++|++.  + .+|++|+.|++
T Consensus         8 ~~~~H~~~V~~v~~s~--~g~~lasgs~D~~v~lwd~~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~   82 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDY--YGTRLATCSSDRSVKIFDVRNGG--QILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRK   82 (316)
T ss_dssp             ------CCEEEEEECG--GGCEEEEEETTTEEEEEEEETTE--EEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSC
T ss_pred             ecccccCeEEEeeEcC--CCCEEEEEeCCCeEEEEEecCCC--cEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCE
Confidence            4578999999999999  99999999999999999998621  1346788999999999999853  5 89999999999


Q ss_pred             EEEEECCCCe---EEEeecCCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCcc---ceeEeccCCCeEEEEEecCC
Q 009380          307 IRLMDAEKEV---FDLVYSSEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       307 I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~i~~~p~~  379 (536)
                      |++||++++.   ...+.+|...|.+++|+|++ ..+|++|+.||.|++||++.+..   ...+.+|...|.+++|+|+.
T Consensus        83 v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  162 (316)
T 3bg1_A           83 VIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAV  162 (316)
T ss_dssp             EEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCC
T ss_pred             EEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcccc
Confidence            9999998863   23445688999999999983 37899999999999999987642   34556899999999999973


Q ss_pred             ----------------CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC----CeEEEEeCCCcEE
Q 009380          380 ----------------PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG----SSLATTSFDDTIG  439 (536)
Q Consensus       380 ----------------~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g----~~l~t~s~dg~I~  439 (536)
                                      ..+|++|+.|+.|++||++.... ......+.+|...|.+++|+|++    .+|++++.|++|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~  241 (316)
T 3bg1_A          163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVF  241 (316)
T ss_dssp             CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred             CCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence                            25899999999999999975310 01223445899999999999986    7899999999999


Q ss_pred             EEeCCCCC----cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          440 IWSGVNFE----NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       440 iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      |||+.+..    ....+...   ...  +..++|+|++.+|++++.|+.|++|+..
T Consensus       242 iw~~~~~~~~~~~~~~~~~~---~~~--v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          242 IWTCDDASSNTWSPKLLHKF---NDV--VWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEECSSTTCCCCBCCEEEEC---SSC--EEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEccCccccchhhhhhhcC---CCc--EEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99987632    11222211   122  3448899999999999999999999975

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.5e-33  Score=285.67  Aligned_cols=279  Identities=16%  Similarity=0.178  Sum_probs=227.7

Q ss_pred             ccccccCCce-EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          228 NIARIMPGRI-TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       228 ~~~~~~~~~I-~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      ..+.+|.+.| +++.+    ++++|++|+.||.|++||+.+    ...+..+.+|.+.|.+++|++++  +|++|+.||+
T Consensus       115 ~~l~~h~~~v~~~~~~----~~~~l~sgs~dg~i~vwd~~~----~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~  184 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF----EDNYVITGADDKMIRVYDSIN----KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRT  184 (464)
T ss_dssp             EEEECCSSSCEEEEEE----ETTEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECSTT--EEEEEETTSC
T ss_pred             EEEcCCCCCcEEEEEE----CCCEEEEEcCCCcEEEEECCC----CcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCC
Confidence            4567888775 55555    457999999999999999987    77889999999999999999875  9999999999


Q ss_pred             EEEEECCCCeEEEee-cCCCceeEEEecC--CCCCEEEEEECCCeEEEEECCCCcc-----------------------c
Q 009380          307 IRLMDAEKEVFDLVY-SSEYAVFSLSQQP--NNVNTLYFGEGQGGLNIWDVRSRKS-----------------------A  360 (536)
Q Consensus       307 I~vwd~~~~~~~~~~-~~~~~i~~l~~~~--~~~~~l~~g~~dg~i~i~d~~~~~~-----------------------~  360 (536)
                      |++||++++.....+ .|...|.+++|++  ++ .++++|+.||.|++||++++..                       +
T Consensus       185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             EEEEECCCCcEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            999999998766555 5889999999985  44 7999999999999999987653                       3


Q ss_pred             eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEE
Q 009380          361 TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGI  440 (536)
Q Consensus       361 ~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~i  440 (536)
                      ..+.+|...|.++..+  + .++++|+.||.|++||+++++    ....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus       264 ~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          264 GVLRGHMASVRTVSGH--G-NIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI  336 (464)
T ss_dssp             EEECCCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEccCccceEEEEcCC--C-CEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            4566888889888543  4 699999999999999999853    44555689999999999999999999999999999


Q ss_pred             EeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCE
Q 009380          441 WSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT  520 (536)
Q Consensus       441 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~  520 (536)
                      ||+.+++.+..+....   ..+..  +.|+  +.+|++|+.||.|++||+.++.....+...+  .+ ..+.++| ++.+
T Consensus       337 wd~~~~~~~~~~~~h~---~~v~~--~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--~~-~~~~~~~-~~~~  405 (464)
T 3v7d_B          337 WDLENGELMYTLQGHT---ALVGL--LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTN--LS-AITTFYV-SDNI  405 (464)
T ss_dssp             EETTTTEEEEEECCCS---SCEEE--EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTT--CC-CEEEEEE-CSSE
T ss_pred             EECCCCcEEEEEeCCC---CcEEE--EEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCC--Cc-cEEEEEe-CCCE
Confidence            9999988777774322   23333  4455  6799999999999999999887665554222  22 3456666 5688


Q ss_pred             EEEEccCCeEEEEecC
Q 009380          521 LAGATGGGQVYVWTSD  536 (536)
Q Consensus       521 lasgs~Dg~v~iW~~d  536 (536)
                      |++|+ ||.|+|||++
T Consensus       406 l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          406 LVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             EEEEE-TTEEEEEETT
T ss_pred             EEEec-CCeEEEEECC
Confidence            99888 8999999974

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.8e-33  Score=275.05  Aligned_cols=283  Identities=14%  Similarity=0.126  Sum_probs=233.0

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc----cccccccCCceEEEEEEecCCcc-EEE
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP----ENIARIMPGRITQMKFLPCSDVR-MVV  252 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~----~~~~~~~~~~I~~v~~~p~~~~~-~l~  252 (536)
                      +..+|.+.|.++.|+|++..++.          ++.||.|.+|++....    ......|...|++++|+|  ++. +|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~----------~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~   73 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLI----------TSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID--NTDLQIY   73 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEE----------EETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE--SSSEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEE----------EcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC--CCCcEEE
Confidence            45689999999999999998884          4788999999986554    455568899999999999  999 999


Q ss_pred             EEeCCCcEEEEEC-CCCCCCCCceEEecc--CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC---------CeEEEe
Q 009380          253 AGSKLGNITFWNL-DSQQDEDNGIYLFRT--HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK---------EVFDLV  320 (536)
Q Consensus       253 tg~~dg~v~iwd~-~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~---------~~~~~~  320 (536)
                      +|+.||.|++|++ ..     .....+.+  |...|.+++|+| + .+|++++.|+.|++||+.+         +.....
T Consensus        74 ~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           74 VGTVQGEILKVDLIGS-----PSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             EEETTSCEEEECSSSS-----SSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             EEcCCCeEEEEEeccC-----CceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeE
Confidence            9999999999999 75     34577888  999999999999 6 9999999999999999987         665556


Q ss_pred             ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-Ccc--ceeEeccCCCeEEEEEec-CCCCEEEEEeCCCcEEEEe
Q 009380          321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKS--ATEWLLHEARINTIDFNP-RNPNIMATSSTDGTACIWD  396 (536)
Q Consensus       321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~--~~~~~~h~~~i~~i~~~p-~~~~~l~s~s~dg~i~iwd  396 (536)
                      +.+...|.+++|++++   +++++.+|.|++||+++ +..  ......|...|.+++|+| ++ .+|++++.||.|++||
T Consensus       147 ~~~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~  222 (342)
T 1yfq_A          147 TKVKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEF  222 (342)
T ss_dssp             SSSCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEE
T ss_pred             EeeCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEE
Confidence            6688999999999864   99999999999999998 553  234446888999999999 87 6999999999999999


Q ss_pred             CCCC--CCCCCCcceeecccC---------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          397 LRSM--ATDKPEPMKVLSHKR---------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       397 l~~~--~~~~~~~~~~~~~~~---------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      ++..  .........+..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+...  ....+.. 
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--h~~~v~~-  299 (342)
T 1yfq_A          223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF--NEDSVVK-  299 (342)
T ss_dssp             CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--SSSEEEE-
T ss_pred             EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc--cCCCceE-
Confidence            9875  111123444455644         9999999999999999999999999999988876665321  0234444 


Q ss_pred             EEEEcCCCCEEEEEcCCCc-EEEEc
Q 009380          466 RAIWGWDDSCVFIGNMTRT-VEVIS  489 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~dg~-I~v~d  489 (536)
                       ++  +++.+|++++.||. .+.|.
T Consensus       300 -~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          300 -IA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             -EE--ECSSEEEEEEECTHHHHCSS
T ss_pred             -ec--CCCCeEEEEecCCccccccc
Confidence             33  89999999999997 44443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=289.82  Aligned_cols=293  Identities=14%  Similarity=0.128  Sum_probs=228.1

Q ss_pred             ecccccceeeeecCC-CCcccccccccccccccccccceEEeccccc---Cc---cccccccCCceEEEEEEecCCccEE
Q 009380          179 IKDEFNGFKTCKDEG-LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---KP---ENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---~~---~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      ..+|.+.|.++.|+| ++..++          +++.||.|+||++..   ..   ......|.+.|++++|+|  ++.+|
T Consensus        59 ~~~h~~~V~~~~~s~~~~~~l~----------s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l  126 (437)
T 3gre_A           59 MENEPNSITSSAVSPGETPYLI----------TGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP--NFDAF  126 (437)
T ss_dssp             CTTTTSCEEEEEEECSSSCEEE----------EEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT--TSSEE
T ss_pred             ccCCCCceEEEEECCCCCCEEE----------EecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC--CCCEE
Confidence            388999999999999 999888          457899999999854   21   122225899999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEec----------c--CCCCEEEEE--EecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFR----------T--HLGPISGIV--TQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~----------~--h~~~V~~l~--~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ++|+.||.|++||+..... +.....+.          .  +...+.++.  +++++ .+|++++.||.|++||++++..
T Consensus       127 ~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQ-ESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEE-TTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCE
T ss_pred             EEEeCCCEEEEEEeccccC-CceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCee
Confidence            9999999999999952100 22332222          2  566677777  45677 8999999999999999998876


Q ss_pred             EEee-c--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecC---CCCEEEEEeCCC
Q 009380          318 DLVY-S--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPR---NPNIMATSSTDG  390 (536)
Q Consensus       318 ~~~~-~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~---~~~~l~s~s~dg  390 (536)
                      ...+ .  |...|.+++|+|++ ++|++|+.||.|++||+++++++..+. .|...|.+++|+|.   +..+|++|+.||
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             eEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence            5554 3  67899999999997 899999999999999999999888886 78889999977753   236999999999


Q ss_pred             cEEEEeCCCCCCCC--------CCcc------------eeec--ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          391 TACIWDLRSMATDK--------PEPM------------KVLS--HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       391 ~i~iwdl~~~~~~~--------~~~~------------~~~~--~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      .|++||+++++...        ....            .+.+  |...|++++|+ ++.+|++++.|+.|++||+.+++.
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence            99999998754100        0000            0112  77889999999 778999999999999999999887


Q ss_pred             ceEEeccC----------------------------------CCCceeeeeEEEEcCC--CCEEEEEcCCCcEEEEc
Q 009380          449 TSMIHHNN----------------------------------QTGRWISSFRAIWGWD--DSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       449 ~~~~~~~~----------------------------------~~~~~~~~~~~~~s~~--g~~l~~gs~dg~I~v~d  489 (536)
                      ...+....                                  .....+..  +.|+++  +.+|++|+.||.|+||+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~--i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS--ISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE--EEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee--EeeeccCCceEEEEEcCCceEEEeC
Confidence            77664310                                  01222333  556666  77999999999999995

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.9e-33  Score=285.12  Aligned_cols=284  Identities=14%  Similarity=0.146  Sum_probs=224.2

Q ss_pred             eEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec-CCCCEEEEEECCCeEEEEECCC
Q 009380          237 ITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       237 I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ...++++|  +.. ++++|+.+|.|+||++.........+..+.+|.+.|.+++|+| ++ .+|++|+.||.|++||+.+
T Consensus        37 ~~~~~~~~--~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           37 SGFCAVNP--KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             SCSEEECS--SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCT
T ss_pred             CCcEEECC--CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccC
Confidence            34578888  554 3445788999999999753221245667889999999999999 66 9999999999999999987


Q ss_pred             Ce--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE--eccCCCeEEEEEecCCCCEEE
Q 009380          315 EV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW--LLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       315 ~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      +.        ...+.+|...|.+++|+|++.++|++++.||.|++||+++++.+..+  ..|...|.+++|+|++ .+|+
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~  192 (402)
T 2aq5_A          114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALIC  192 (402)
T ss_dssp             TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEE
T ss_pred             CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEE
Confidence            62        34556789999999999998679999999999999999999999888  7899999999999977 7899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCccee-ecccCc-eeEEEEccCCCeEEEE---eCCCcEEEEeCCCCCcc-eEEeccCCC
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKV-LSHKRA-VHSAYFSPSGSSLATT---SFDDTIGIWSGVNFENT-SMIHHNNQT  458 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~-~~~~~~-v~~l~~sp~g~~l~t~---s~dg~I~iwd~~~~~~~-~~~~~~~~~  458 (536)
                      +++.||.|++||+++++    ....+ ..|... +.++.|+|++.+|+++   +.|+.|++||+++.+.. ........ 
T Consensus       193 ~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-  267 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS-  267 (402)
T ss_dssp             EEETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC-
T ss_pred             EEecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCC-
Confidence            99999999999999853    33444 467665 8999999999999999   78999999999987653 33322111 


Q ss_pred             CceeeeeEEEEcCCCCEEE-EEcCCCcEEEEcCCcccc-ceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          459 GRWISSFRAIWGWDDSCVF-IGNMTRTVEVISPAQRRS-VATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~-~gs~dg~I~v~d~~~~~~-~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                       ..  ...+.|+|++.+|+ +|+.|+.|++|++.+++. +..+..+........++|+| ++.+++  +.|+.+++|++
T Consensus       268 -~~--v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~--s~~~~~~~~~l  340 (402)
T 2aq5_A          268 -SG--VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEV--NKCEIARFYKL  340 (402)
T ss_dssp             -SS--CEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCG--GGTEEEEEEEE
T ss_pred             -Cc--eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-ccccce--ecceeEEEEEc
Confidence             11  33478999999986 566799999999998874 55554432222235788999 456665  45679999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.4e-32  Score=279.74  Aligned_cols=278  Identities=16%  Similarity=0.251  Sum_probs=232.0

Q ss_pred             ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ....+.+|.+.|.. ++++  ++++|++|+.||.|++||+.+    +..+..+.+|...|.++.|+  + ++|++|+.||
T Consensus       110 ~~~~l~~h~~~v~~-~~~~--~g~~l~sg~~dg~i~vwd~~~----~~~~~~~~~h~~~v~~~~~~--~-~~l~s~~~dg  179 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQF--CGNRIVSGSDDNTLKVWSAVT----GKCLRTLVGHTGGVWSSQMR--D-NIIISGSTDR  179 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEE--ETTEEEEEETTSCEEEEETTT----CCEEEECCCCSSCEEEEEEE--T-TEEEEEETTS
T ss_pred             eeEEecccCCCcEE-EEEE--cCCEEEEEECCCcEEEEECCC----CcEEEEEcCCCCCEEEEEec--C-CEEEEEeCCC
Confidence            34556889887643 3555  678999999999999999987    77889999999999999998  3 7999999999


Q ss_pred             eEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          306 LIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      +|++||+.++..... ..|...|.+++|++   +.+++|+.||.|++||+.+++.+..+.+|...|.+++|.  + .+++
T Consensus       180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~  253 (445)
T 2ovr_B          180 TLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--G-RRVV  253 (445)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--S-SCEE
T ss_pred             eEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--C-CEEE
Confidence            999999998876544 46889999999963   589999999999999999999999999999999999993  4 6899


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                      +|+.||.|++||+++++    ....+.+|...|.++.|  ++.++++++.|+.|++||+.+++....+....   ..+..
T Consensus       254 ~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~v~~  324 (445)
T 2ovr_B          254 SGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ---SLTSG  324 (445)
T ss_dssp             EEETTSCEEEEEGGGTE----EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC---SCEEE
T ss_pred             EEcCCCEEEEEECCCCc----EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc---ccEEE
Confidence            99999999999998853    44455579999999999  78899999999999999999988777664222   12222


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC--ceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP--YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~--~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                          +.+++.+|++|+.||.|++||+.+++.+..+..+  |...+ ..+.|+   +.+|++|+.||.|+|||++
T Consensus       325 ----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~---~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          325 ----MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV-TCLQFN---KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             ----EEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCE-EEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             ----EEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCE-EEEEEC---CCEEEEEeCCCeEEEEECC
Confidence                3346779999999999999999999988888762  33333 456775   4899999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=6.2e-32  Score=275.74  Aligned_cols=270  Identities=13%  Similarity=0.222  Sum_probs=223.7

Q ss_pred             cccceEEecccccCcc-ccc--cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE
Q 009380          212 EVGSCVDIGSLTLKPE-NIA--RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI  288 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~~-~~~--~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l  288 (536)
                      +.|++|+|||...... ...  ..|.+.|++|+|+|  +|.+|++|+.||.|+|||+.+    +..+..+.+|...|.++
T Consensus       122 gld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp--dg~~lasgs~Dg~v~iWd~~~----~~~~~~~~~h~~~v~~~  195 (420)
T 4gga_A          122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLWDVQQ----QKRLRNMTSHSARVGSL  195 (420)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEE
T ss_pred             EeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC--CCCEEEEEECCCeEEEEEcCC----CcEEEEEeCCCCceEEE
Confidence            4688999999865432 222  45678899999999  999999999999999999998    78889999999999998


Q ss_pred             EEecCCCCEEEEEECCCeEEEEECCCC--eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc----cee
Q 009380          289 VTQQYCLSKIFTSCYDGLIRLMDAEKE--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS----ATE  362 (536)
Q Consensus       289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~----~~~  362 (536)
                      .|++   .+|++|+.|+.+++||....  ....+..|...+..+.|+|++ .++++++.||.|++||..+++.    +..
T Consensus       196 s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~  271 (420)
T 4gga_A          196 SWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQT  271 (420)
T ss_dssp             EEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred             eeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeee
Confidence            8864   78999999999999998864  334556789999999999998 8999999999999999987753    456


Q ss_pred             EeccCCCeEEEEEecCCCCEEEEE--eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe--CCCcE
Q 009380          363 WLLHEARINTIDFNPRNPNIMATS--STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS--FDDTI  438 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p~~~~~l~s~--s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s--~dg~I  438 (536)
                      ...|...|.+++|+|.+.++++++  +.|++|++||++++     .......+...+.++.|+|++..+++++  .|+.|
T Consensus       272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-----~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I  346 (420)
T 4gga_A          272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQL  346 (420)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-----EEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCE
T ss_pred             ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-----ccceeeccccceeeeeecCCCCeEEEEEecCCCEE
Confidence            678999999999999988888775  47999999999985     3445556677899999999999888765  78999


Q ss_pred             EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccC
Q 009380          439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      +|||+.+++++..+..+   ...+  ..++|+|+|.+|++|+.|++|+|||+....+....+.
T Consensus       347 ~iwd~~~~~~v~~l~gH---~~~V--~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~  404 (420)
T 4gga_A          347 VIWKYPTMAKVAELKGH---TSRV--LSLTMSPDGATVASAAADETLRLWRCFELDPARRRER  404 (420)
T ss_dssp             EEEETTTCCEEEEECCC---SSCE--EEEEECTTSSCEEEEETTTEEEEECCSCSSCC-----
T ss_pred             EEEECCCCcEEEEEcCC---CCCE--EEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhh
Confidence            99999999888877422   1223  3478999999999999999999999987766655543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-32  Score=280.42  Aligned_cols=271  Identities=15%  Similarity=0.244  Sum_probs=226.2

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ..|...|+++.|    ++.+|++|+.||.|++||+.+    ...+..+.+|...|.+++|  ++ ++|++|+.||.|++|
T Consensus       130 ~~~~~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vw  198 (435)
T 1p22_A          130 SETSKGVYCLQY----DDQKIVSGLRDNTIKIWDKNT----LECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVW  198 (435)
T ss_dssp             CSSCCCEEEEEC----CSSEEEEEESSSCEEEEESSS----CCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEE----CCCEEEEEeCCCeEEEEeCCC----CeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEE
Confidence            456677988877    678999999999999999987    7788899999999999999  55 899999999999999


Q ss_pred             ECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc---eeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          311 DAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA---TEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       311 d~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~---~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      |+.++..... ..|...|.+++|++   +.+++|+.||.|++||++++..+   ..+.+|...|.+++|.  + .+|++|
T Consensus       199 d~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~  272 (435)
T 1p22_A          199 DVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYIVSA  272 (435)
T ss_dssp             ESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEEEEE
T ss_pred             ECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEEEEE
Confidence            9998866544 46889999999974   58999999999999999988765   5677899999999994  4 699999


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      +.||.|++||+++++    ....+.+|...|.++.|+  +.+|++++.||.|++||+++++.+..+....   ..+..  
T Consensus       273 ~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~--  341 (435)
T 1p22_A          273 SGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE---ELVRC--  341 (435)
T ss_dssp             ETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS---SCEEE--
T ss_pred             eCCCeEEEEECCcCc----EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc---CcEEE--
Confidence            999999999999853    455566899999999994  7899999999999999999988877774322   22333  


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCCccc---------cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPAQRR---------SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~---------~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +.|  ++.+|++|+.||.|++||+.++.         .+..+.+|...+.  .+.|   ++.+|++|+.||.|+|||++
T Consensus       342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~---~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF--RLQF---DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC--CEEE---CSSCEEECCSSSEEEEEC--
T ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE--EEEe---CCCEEEEEeCCCEEEEEECC
Confidence            444  78899999999999999998776         6677776655444  4566   45889999999999999974

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.1e-32  Score=279.53  Aligned_cols=290  Identities=10%  Similarity=0.109  Sum_probs=230.8

Q ss_pred             eeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      ..++.++++...+.         +.++.+|.|.+|++...     .......|.+.|++++|+|. ++.+|++|+.||.|
T Consensus        37 ~~~~~~~~~~~~~~---------~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~-~~~~l~s~s~dg~v  106 (402)
T 2aq5_A           37 SGFCAVNPKFMALI---------CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH-NDNVIASGSEDCTV  106 (402)
T ss_dssp             SCSEEECSSEEEEE---------BCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT-CTTEEEEEETTSEE
T ss_pred             CCcEEECCCeEEEE---------EEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC-CCCEEEEEeCCCeE
Confidence            34566666665444         24577899999998442     23345789999999999995 57899999999999


Q ss_pred             EEEECCCCCCC---CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee---cCCCceeEEEecC
Q 009380          261 TFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY---SSEYAVFSLSQQP  334 (536)
Q Consensus       261 ~iwd~~~~~~~---~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~  334 (536)
                      +||++.+....   ...+..+.+|...|.+++|+|++..+|++++.||.|++||+.++.....+   .|...|.+++|+|
T Consensus       107 ~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~  186 (402)
T 2aq5_A          107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR  186 (402)
T ss_dssp             EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT
T ss_pred             EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC
Confidence            99999874210   15678889999999999999998579999999999999999998776555   5889999999999


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeE-eccCCC-eEEEEEecCCCCEEEEE---eCCCcEEEEeCCCCCCCCCCcce
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEAR-INTIDFNPRNPNIMATS---STDGTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~-i~~i~~~p~~~~~l~s~---s~dg~i~iwdl~~~~~~~~~~~~  409 (536)
                      ++ ++|++++.||.|++||+++++.+..+ ..|... +.++.|+|++ .+|++|   +.|+.|++||+++...  .....
T Consensus       187 ~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~--~~~~~  262 (402)
T 2aq5_A          187 DG-ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEE--PLSLQ  262 (402)
T ss_dssp             TS-SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSS--CSEEE
T ss_pred             CC-CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccC--CceEE
Confidence            88 89999999999999999999998888 678776 8999999987 788888   7899999999998641  12223


Q ss_pred             eecccCceeEEEEccCCCeEEE-EeCCCcEEEEeCCCCCc-ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380          410 VLSHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVNFEN-TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV  487 (536)
Q Consensus       410 ~~~~~~~v~~l~~sp~g~~l~t-~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v  487 (536)
                      ...|...+.+++|+|++.+|++ ++.|+.|++||+.+.+. ...+.... ....+.  .++|+|++.++++  .++.+++
T Consensus       263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~--~~~~sp~~~~~~s--~~~~~~~  337 (402)
T 2aq5_A          263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQR--GMGYMPKRGLEVN--KCEIARF  337 (402)
T ss_dssp             ECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCS--EEEECCGGGSCGG--GTEEEEE
T ss_pred             eccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCccc--ceEEeccccccee--cceeEEE
Confidence            3367889999999999998875 45799999999998875 44443221 222233  3779999988765  4669999


Q ss_pred             EcCCccc
Q 009380          488 ISPAQRR  494 (536)
Q Consensus       488 ~d~~~~~  494 (536)
                      |++.++.
T Consensus       338 ~~l~~~~  344 (402)
T 2aq5_A          338 YKLHERK  344 (402)
T ss_dssp             EEEETTE
T ss_pred             EEcCCCc
Confidence            9998764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=8.7e-33  Score=272.69  Aligned_cols=267  Identities=16%  Similarity=0.155  Sum_probs=218.7

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-----ccccccccCCceEEEEEEecCCcc
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-----PENIARIMPGRITQMKFLPCSDVR  249 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-----~~~~~~~~~~~I~~v~~~p~~~~~  249 (536)
                      ++.++.+|.+.|.++.|+|++..++.          ++.||.|++|++...     .......|.+.|++++|+|..++.
T Consensus         3 ~~~~~~gH~~~v~~~~~~~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~   72 (351)
T 3f3f_A            3 MQPFDSGHDDLVHDVVYDFYGRHVAT----------CSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR   72 (351)
T ss_dssp             CCCEECCCSSCEEEEEECSSSSEEEE----------EETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS
T ss_pred             ccccCcccccceeEEEEcCCCCEEEE----------eeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC
Confidence            45678999999999999999998884          478899999998643     223346799999999999943489


Q ss_pred             EEEEEeCCCcEEEEECCCCCCCC-----CceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCCeEEEe--
Q 009380          250 MVVAGSKLGNITFWNLDSQQDED-----NGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKEVFDLV--  320 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~~~~~~--  320 (536)
                      +|++|+.||.|++||+.......     ..+..+..|...|.+++|+|+  + .+|++++.||.|++||+.++.....  
T Consensus        73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~  151 (351)
T 3f3f_A           73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDLRSWT  151 (351)
T ss_dssp             EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred             EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHhcccc
Confidence            99999999999999998743211     457788899999999999999  7 9999999999999999987643211  


Q ss_pred             ------------ecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCC---C
Q 009380          321 ------------YSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNP---N  381 (536)
Q Consensus       321 ------------~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~---~  381 (536)
                                  ..+...+.+++|+|+  ++.++++++.++.+.+|+...++.  +..+.+|...|++++|+|+++   +
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~  231 (351)
T 3f3f_A          152 LTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ  231 (351)
T ss_dssp             EEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred             ccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence                        146678999999997  348999999999998888877765  666778999999999999863   6


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCC------------------------------------------CCcceeecccCceeE
Q 009380          382 IMATSSTDGTACIWDLRSMATDK------------------------------------------PEPMKVLSHKRAVHS  419 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~------------------------------------------~~~~~~~~~~~~v~~  419 (536)
                      +|++|+.||.|++||++......                                          .......+|...|++
T Consensus       232 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  311 (351)
T 3f3f_A          232 LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWS  311 (351)
T ss_dssp             EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEE
T ss_pred             EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEE
Confidence            99999999999999998742100                                          122233468999999


Q ss_pred             EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          420 AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       420 l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      ++|+|++++|++++.||.|+|||+.+++....+
T Consensus       312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          312 VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            999999999999999999999999887665544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=275.26  Aligned_cols=261  Identities=13%  Similarity=0.149  Sum_probs=215.8

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      ..++.+|...|.++.|+++++.++.          ++.||.|++|++...   .......|.+.|++++|+|..++.+|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~----------~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~   73 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLAT----------CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILA   73 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEE----------EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEE----------EECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEE
Confidence            4568999999999999999998884          477899999998522   233456799999999999832389999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCC---eEEEeecCCCce
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKE---VFDLVYSSEYAV  327 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~---~~~~~~~~~~~i  327 (536)
                      +|+.||.|++||+.+..  ...+..+..|...|.+++|+|+  + .+|++++.||.|++||+.++   .......|...|
T Consensus        74 s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           74 SCSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             EEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             EeccCCEEEEEEcCCCc--eeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCce
Confidence            99999999999998721  1267788889999999999999  7 99999999999999999876   334455788999


Q ss_pred             eEEEecCC------------CCCEEEEEECCCeEEEEECCCCcc----ceeEeccCCCeEEEEEecCC--CCEEEEEeCC
Q 009380          328 FSLSQQPN------------NVNTLYFGEGQGGLNIWDVRSRKS----ATEWLLHEARINTIDFNPRN--PNIMATSSTD  389 (536)
Q Consensus       328 ~~l~~~~~------------~~~~l~~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~i~~~p~~--~~~l~s~s~d  389 (536)
                      .+++|+|.            +..+|++++.||.|++||++++..    +..+.+|...|.+++|+|++  +.+|++++.|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d  230 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD  230 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCC
Confidence            99999994            238999999999999999987753    45667899999999999983  4899999999


Q ss_pred             CcEEEEeCCCCCCCC-CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380          390 GTACIWDLRSMATDK-PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT  449 (536)
Q Consensus       390 g~i~iwdl~~~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~  449 (536)
                      |.|++||++.+.... ........|...|++++|+|++++|++++.||.|++|++......
T Consensus       231 g~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          231 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             CEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            999999999853111 011222248899999999999999999999999999998755433

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.5e-31  Score=257.26  Aligned_cols=276  Identities=12%  Similarity=0.190  Sum_probs=226.9

Q ss_pred             eeeecCCCCcccccccccccccccccccceEEecccccCcc-ccc--cccCCceEEEEEEecCCccEEEEEeCCCcEEEE
Q 009380          187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIA--RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFW  263 (536)
Q Consensus       187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~--~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iw  263 (536)
                      .++.+|+++ +|+.           +.|+.|+|||+..... ...  ..|...|++++|+|  ++++|++|+.||+|++|
T Consensus        29 ~~l~WS~~~-~lAv-----------g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~--~~~~l~sgs~Dg~v~iw   94 (318)
T 4ggc_A           29 NLVDWSSGN-VLAV-----------ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK--EGNYLAVGTSSAEVQLW   94 (318)
T ss_dssp             BCEEECTTS-EEEE-----------EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT--TSSEEEEEETTSEEEEE
T ss_pred             eEEEECCCC-EEEE-----------EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC--CCCEEEEEECCCcEEEe
Confidence            567888876 5552           4688999999865432 222  45788899999999  99999999999999999


Q ss_pred             ECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe--EEEeecCCCceeEEEecCCCCCEEE
Q 009380          264 NLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV--FDLVYSSEYAVFSLSQQPNNVNTLY  341 (536)
Q Consensus       264 d~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~--~~~~~~~~~~i~~l~~~~~~~~~l~  341 (536)
                      ++.+    +..+..+.+|...+.++.+.  + ..+++++.++.+++|+.....  ......|...+..+.+.+++ ++|+
T Consensus        95 ~~~~----~~~~~~~~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  166 (318)
T 4ggc_A           95 DVQQ----QKRLRNMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLA  166 (318)
T ss_dssp             ETTT----TEEEEEEECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEE
T ss_pred             ecCC----ceeEEEecCccceEEEeecC--C-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEE
Confidence            9998    78889999999998876665  4 789999999999999988753  34556788999999999998 8999


Q ss_pred             EEECCCeEEEEECCCCcc----ceeEeccCCCeEEEEEecCCCCEEE--EEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380          342 FGEGQGGLNIWDVRSRKS----ATEWLLHEARINTIDFNPRNPNIMA--TSSTDGTACIWDLRSMATDKPEPMKVLSHKR  415 (536)
Q Consensus       342 ~g~~dg~i~i~d~~~~~~----~~~~~~h~~~i~~i~~~p~~~~~l~--s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~  415 (536)
                      +++.||.|++||+++++.    ......|...|.++.++|++.+++.  +++.++.|++||.+..     .......+..
T Consensus       167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-----~~~~~~~~~~  241 (318)
T 4ggc_A          167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-----ACLSAVDAHS  241 (318)
T ss_dssp             EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-----CEEEEEECSS
T ss_pred             EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-----ccccccccee
Confidence            999999999999998764    3445578889999999998877654  5567899999999874     4455567888


Q ss_pred             ceeEEEEccCCCeEEEEe--CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          416 AVHSAYFSPSGSSLATTS--FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       416 ~v~~l~~sp~g~~l~t~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      .+..+.|+|++..+++++  .|+.|+|||+.+++.+..+..+   ...+.  .++|+|+|++|++|+.|+.|+|||+.+.
T Consensus       242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH---~~~V~--~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH---TSRVL--SLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC---SSCEE--EEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC---CCCEE--EEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            999999999998887765  7999999999999988877522   12344  4789999999999999999999998765


Q ss_pred             c
Q 009380          494 R  494 (536)
Q Consensus       494 ~  494 (536)
                      .
T Consensus       317 d  317 (318)
T 4ggc_A          317 D  317 (318)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=275.08  Aligned_cols=285  Identities=14%  Similarity=0.036  Sum_probs=222.0

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec----------------------------------
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR----------------------------------  279 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~----------------------------------  279 (536)
                      ..+|.+++|+|  +|++|+++. ++.|++||+.++.. ...+..+.                                  
T Consensus         4 ~~p~~~v~~s~--dg~~l~~~~-~~~i~v~d~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            4 IHPLQNLLTSR--DGSLVFAII-KNCILSFKYQSPNH-WEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             ECCCCEEEECS--SSSEEEEEE-TTEEEEEEEETTTE-EEEEEEEECCC-------------------------------
T ss_pred             cccEEEEEecC--CCCEEEEEe-CCeEEEEECCCCCc-ceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            35789999999  999777664 78999999877420 00222222                                  


Q ss_pred             --------------------cCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECC--CCeEEEee---cCCCceeEEEec
Q 009380          280 --------------------THLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAE--KEVFDLVY---SSEYAVFSLSQQ  333 (536)
Q Consensus       280 --------------------~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~--~~~~~~~~---~~~~~i~~l~~~  333 (536)
                                          +|.+.|.+++|+|++ .+| ++++.||.|++||+.  ++.....+   .+...|.+++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-SRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTS-SEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCC-CEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                                455579999999999 775 899999999999998  66555443   567899999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccce----eEeccCCCeEEEEEecC---CCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSAT----EWLLHEARINTIDFNPR---NPNIMATSSTDGTACIWDLRSMATDKPE  406 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~h~~~i~~i~~~p~---~~~~l~s~s~dg~i~iwdl~~~~~~~~~  406 (536)
                      |++ .+|++|+.+|.|++|++.++....    .+.+|...|.+++|+|+   + .+|++|+.|+.|++||++++.    .
T Consensus       159 p~~-~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~----~  232 (450)
T 2vdu_B          159 EDD-TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCF----I  232 (450)
T ss_dssp             TTS-SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTT----C
T ss_pred             CCC-CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCc----e
Confidence            998 899999999999999999877554    77789999999999998   5 799999999999999998753    3


Q ss_pred             cce-eecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--------------------CCceeeee
Q 009380          407 PMK-VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--------------------TGRWISSF  465 (536)
Q Consensus       407 ~~~-~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--------------------~~~~~~~~  465 (536)
                      ... ..+|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+.....                    ........
T Consensus       233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          233 VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence            333 34799999999999 999999999999999999999988777752210                    01112234


Q ss_pred             EEEEcCCCCEEEEEc-CCCcEEEEcC--Ccc---ccceeccCCceeeeeeeEeecCCCCCEEEEEcc-------CCeEEE
Q 009380          466 RAIWGWDDSCVFIGN-MTRTVEVISP--AQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-------GGQVYV  532 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs-~dg~I~v~d~--~~~---~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-------Dg~v~i  532 (536)
                      .+.|+|++++|++++ .++.|+||++  .++   ..+..+..+ ..  ...++|+| + .++++.+.       +..|.|
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~--v~~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v  386 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YN--VISLSAHN-D-EFQVTLDNKESSGVQKNFAKF  386 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SC--EEEEEEET-T-EEEEEECCTTCCSSCCCSEEE
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-Cc--eEEEEecC-C-cEEEEEecccCCCCCCcceEE
Confidence            478999999999998 8999999999  555   556666665 22  25788998 4 45555433       556888


Q ss_pred             Eec
Q 009380          533 WTS  535 (536)
Q Consensus       533 W~~  535 (536)
                      |.+
T Consensus       387 ~~~  389 (450)
T 2vdu_B          387 IEY  389 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2e-31  Score=273.18  Aligned_cols=277  Identities=13%  Similarity=0.200  Sum_probs=223.3

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCCC
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKLG  258 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg  258 (536)
                      .+|...|.++.+  ++..++          +++.||.|++||+... ......+|.+.|++++|    ++.+|++|+.||
T Consensus       130 ~~~~~~v~~~~~--d~~~l~----------~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg  193 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIV----------SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDS  193 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEE----------EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTS
T ss_pred             cCCCCcEEEEEE--CCCEEE----------EEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCC
Confidence            456778888887  677666          4578899999998543 33456789999999998    568999999999


Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE----EEeecCCCceeEEEecC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF----DLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~  334 (536)
                      .|++||+.+    +..+..+.+|...|.+++|++   .+|++|+.||.|++||+.++..    ....+|...|.+++|  
T Consensus       194 ~i~vwd~~~----~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--  264 (435)
T 1p22_A          194 TVRVWDVNT----GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--  264 (435)
T ss_dssp             CEEEEESSS----CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--
T ss_pred             eEEEEECCC----CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--
Confidence            999999998    678889999999999999974   6999999999999999987653    345578899999999  


Q ss_pred             CCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          335 NNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       335 ~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      ++ +++++|+.||.|++||+++++.+..+.+|...|.++.|+  + .++++|+.||.|++||+++++    ....+.+|.
T Consensus       265 ~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~  336 (435)
T 1p22_A          265 DD-KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA----CLRVLEGHE  336 (435)
T ss_dssp             ET-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC----EEEEECCCS
T ss_pred             CC-CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC----EEEEEeCCc
Confidence            34 799999999999999999999999999999999999996  3 699999999999999999863    445566899


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC---------cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE---------NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      ..|.+++|  ++.+|++++.||.|++||+.+..         ....+..   ....+..  +.|  ++.+|++|+.||.|
T Consensus       337 ~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---h~~~v~~--l~~--~~~~l~s~s~Dg~i  407 (435)
T 1p22_A          337 ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE---HSGRVFR--LQF--DEFQIVSSSHDDTI  407 (435)
T ss_dssp             SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC---CSSCCCC--EEE--CSSCEEECCSSSEE
T ss_pred             CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC---CCCCeEE--EEe--CCCEEEEEeCCCEE
Confidence            99999999  78899999999999999986554         3333321   1122333  455  78899999999999


Q ss_pred             EEEcCCcccccee
Q 009380          486 EVISPAQRRSVAT  498 (536)
Q Consensus       486 ~v~d~~~~~~~~~  498 (536)
                      ++||+.+......
T Consensus       408 ~iwd~~~~~~~~~  420 (435)
T 1p22_A          408 LIWDFLNDPAAQA  420 (435)
T ss_dssp             EEEC---------
T ss_pred             EEEECCCCCCccc
Confidence            9999988755443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-32  Score=283.74  Aligned_cols=285  Identities=13%  Similarity=0.113  Sum_probs=211.8

Q ss_pred             eecccccceeeeecCCC------CcccccccccccccccccccceEEecccccCcc------------ccccccCCceEE
Q 009380          178 VIKDEFNGFKTCKDEGL------GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE------------NIARIMPGRITQ  239 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~------~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~------------~~~~~~~~~I~~  239 (536)
                      .+.+|...|..+.|+|+      +.+|+          +++.||.|+||++.....            ..+.+|.+.|++
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LA----------s~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~s  271 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLS----------FVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITT  271 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEE----------EEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEE
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEE----------EEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEE
Confidence            45678899999999997      34555          458899999999854321            245678899999


Q ss_pred             EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE--EEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI--VTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l--~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ++|+|  ++ .|++|+.||+|++||+.+.   ......+.+|...|.+|  .|+|++..+|+||+.|++|++||++++..
T Consensus       272 v~~s~--~~-~lasgs~DgtV~lWD~~~~---~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~  345 (524)
T 2j04_B          272 FDFLS--PT-TVVCGFKNGFVAEFDLTDP---EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEESS--SS-EEEEEETTSEEEEEETTBC---SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHH
T ss_pred             EEecC--CC-eEEEEeCCCEEEEEECCCC---CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCc
Confidence            99998  54 8999999999999999863   24456788999999999  46666437899999999999999988654


Q ss_pred             EE-eecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380          318 DL-VYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI  394 (536)
Q Consensus       318 ~~-~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i  394 (536)
                      .. +.+|.  ..|.+++|+|++ ..+++++.|++|++||++++.++..+.+|...|++|+|+|++ .+|++|+.||+|++
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~l  423 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLII  423 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEEC
T ss_pred             ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEE
Confidence            32 22343  358899999998 789999999999999999999888999999999999999988 68999999999999


Q ss_pred             EeCCCCCCCCCCcceee-----cccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEE
Q 009380          395 WDLRSMATDKPEPMKVL-----SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       395 wdl~~~~~~~~~~~~~~-----~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      ||+...     ......     .+...|.+++|+|++..+. ..  +.+.+|+.. ++.....+..   ....+  ..++
T Consensus       424 wd~~~~-----~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~~~~~~~~g~~~~~l~g---h~~~V--~~Va  490 (524)
T 2j04_B          424 TNAARR-----LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYEVYPLTVNDVSKAKIDA---HGINI--TCTK  490 (524)
T ss_dssp             CBSCSS-----TTTCC------CCCCEEEECBCCSSSCEEE-EC--CCCCCCC----------------CCCSC--CCEE
T ss_pred             EechHh-----hccccccCccceeeeEEEEeccCCCCCeEE-cc--CCceecccccCCcceeeecC---CCceE--EEEE
Confidence            998652     111111     1223578999999998542 22  223344332 2333333321   11223  3478


Q ss_pred             EcCCCC---EEEEEcCCCcEEEEcCCcc
Q 009380          469 WGWDDS---CVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       469 ~s~~g~---~l~~gs~dg~I~v~d~~~~  493 (536)
                      |+|++.   .+++|+.+|.|+||++...
T Consensus       491 fsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          491 WNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             ECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             CCCCCCccHHHHhhccCceEEEEEcccc
Confidence            999964   8999999999999997653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=266.48  Aligned_cols=269  Identities=9%  Similarity=0.034  Sum_probs=205.1

Q ss_pred             EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-----
Q 009380          240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-----  314 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-----  314 (536)
                      ..+.+  ++.+|++|+.||.|++||+.+    +..+..+.  ...|.++.|+|.    +++++.|++|++|+...     
T Consensus        42 ~~~~~--d~~~l~sg~~Dg~v~iwd~~~----~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~  109 (343)
T 3lrv_A           42 KSMYY--DKWVCMCRCEDGALHFTQLKD----SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITIL  109 (343)
T ss_dssp             SSSSE--EEEEEEEEEETTEEEEEEESS----SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEE
T ss_pred             hhhcC--CCCEEEEECCCCcEEEEECCC----CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEe
Confidence            34445  788999999999999999987    55666655  456778888875    99999999999997763     


Q ss_pred             ----CeEEE--eecCCCceeEEEecC--CCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEE
Q 009380          315 ----EVFDL--VYSSEYAVFSLSQQP--NNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       315 ----~~~~~--~~~~~~~i~~l~~~~--~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s  385 (536)
                          +....  ...|...|.+++|+|  ++ +++++++.||.|++||+++++.+.... .|...|.+++|+|++ .+|++
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~las  187 (343)
T 3lrv_A          110 DSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLAL  187 (343)
T ss_dssp             ETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEE
T ss_pred             ecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEE
Confidence                33222  224667899999999  87 899999999999999999998866654 456689999999987 79999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCc-ceeec-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          386 SSTDGTACIWDLRSMATDKPEP-MKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~-~~~~~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      |+.||.|++||+++++    .. ..+.. |...|++++|+|+|.+|++++ |+.|++||+++.+....+.........+.
T Consensus       188 g~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~  262 (343)
T 3lrv_A          188 YSPDGILDVYNLSSPD----QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG  262 (343)
T ss_dssp             ECTTSCEEEEESSCTT----SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C
T ss_pred             EcCCCEEEEEECCCCC----CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccccc
Confidence            9999999999999864    23 34555 999999999999999999999 55999999998876654432111111111


Q ss_pred             eeEEEEcCCCCEEEEEcC-CCcEEEEcCCccccceeccCCceeeeeeeEeecC--CCCCEEEEEccCCeEEEE
Q 009380          464 SFRAIWGWDDSCVFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHP--HQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p--~~~~~lasgs~Dg~v~iW  533 (536)
                      ...++|+|+|++|++++. |+.|+||++.........    ...  ..+.|.|  .+...|++++.||.+.++
T Consensus       263 ~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          263 TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEE--SALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEE--EECCC----CCCCEEEEEEETTEEEEE
T ss_pred             ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCc--eeEecCccccccceeEEEecCCceEEE
Confidence            134789999999999988 999999999766544333    111  2344544  345789999999998886

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.7e-31  Score=264.55  Aligned_cols=293  Identities=13%  Similarity=0.086  Sum_probs=231.2

Q ss_pred             cccccceecccccceeeeecCCC---CcccccccccccccccccccceEEeccccc-Ccc--ccccccCCceEEEEEEec
Q 009380          172 DENLGFVIKDEFNGFKTCKDEGL---GVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPE--NIARIMPGRITQMKFLPC  245 (536)
Q Consensus       172 ~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~--~~~~~~~~~I~~v~~~p~  245 (536)
                      .+.....+.+|.+.|.++.|+|+   |..++          +++.||.|+||++.. ...  .....|.+.|++++|+| 
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~----------~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-   96 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLI----------AGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-   96 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEE----------EEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEE----------EECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-
Confidence            34455678999999999999999   58777          457889999999865 222  45677999999999999 


Q ss_pred             CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE--ecCCCCEEEEEECCCeEEEEECCCCeEEEeecC
Q 009380          246 SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT--QQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS  323 (536)
Q Consensus       246 ~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~  323 (536)
                       ++.+|++|+.||.|++||+.+    .. ...+..|...|.+++|  ++++ .+|++++.||.|++||++++.....+..
T Consensus        97 -~~~~l~s~~~dg~v~iwd~~~----~~-~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~  169 (368)
T 3mmy_A           97 -DGSKVFTASCDKTAKMWDLSS----NQ-AIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQL  169 (368)
T ss_dssp             -TSSEEEEEETTSEEEEEETTT----TE-EEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred             -CCCEEEEEcCCCcEEEEEcCC----CC-ceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEec
Confidence             999999999999999999986    33 4446779999999999  7887 8999999999999999999887777777


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCC---CEEEEEeCCCcEEEEeCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNP---NIMATSSTDGTACIWDLR  398 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~---~~l~s~s~dg~i~iwdl~  398 (536)
                      ...+.++.+.+   ..+++++.++.+.+||++.........  .+...+.++.+.++..   ..+++++.||.|++||++
T Consensus       170 ~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  246 (368)
T 3mmy_A          170 PERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN  246 (368)
T ss_dssp             SSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred             CCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence            77888888875   478889999999999998765432221  3455667777766442   239999999999999998


Q ss_pred             CCCCCCCCcceeecccC------------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          399 SMATDKPEPMKVLSHKR------------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       399 ~~~~~~~~~~~~~~~~~------------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                      ..... .....+..|..            .|++++|+|++++|++++.||.|++||+.+++.+..+...   ...+.  .
T Consensus       247 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~--~  320 (368)
T 3mmy_A          247 PPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL---DQPIS--A  320 (368)
T ss_dssp             CSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC---SSCEE--E
T ss_pred             CCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC---CCCce--E
Confidence            75210 12334445554            7999999999999999999999999999988777666421   22333  4


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      ++|+|+|.+|++++.|+..+.|++.
T Consensus       321 ~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          321 CCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             EEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             EEECCCCCeEEEEeccccccccccc
Confidence            7899999999999998765555443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-32  Score=297.37  Aligned_cols=258  Identities=17%  Similarity=0.200  Sum_probs=210.5

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCC
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDG  305 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg  305 (536)
                      .+..+|.+.|++++|+|  ++++|++|+.||.|+||++....  ...+..+.+|.++|.+++|+|+  + ++|++|+.||
T Consensus         3 ~~l~gH~~~V~~l~~s~--dg~~latg~~dg~I~vwd~~~~~--~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg   77 (753)
T 3jro_A            3 VIANAHNELIHDAVLDY--YGKRLATCSSDKTIKIFEVEGET--HKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDG   77 (753)
T ss_dssp             -----CCCCEEEECCCS--SSCCEEEEETTTEEEEEEEETTE--EEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTS
T ss_pred             eecccCcceeEEEEECC--CCCeEEEEECCCcEEEEecCCCC--CccceeccCCcCceEEEEecCCCCC-CEEEEEeCCC
Confidence            35689999999999999  99999999999999999997422  5677889999999999999987  6 9999999999


Q ss_pred             eEEEEECCCCe---EEEeecCCCceeEEEecCC--CCCEEEEEECCCeEEEEECCCCcc--ceeEeccCCCeEEEEEecC
Q 009380          306 LIRLMDAEKEV---FDLVYSSEYAVFSLSQQPN--NVNTLYFGEGQGGLNIWDVRSRKS--ATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       306 ~I~vwd~~~~~---~~~~~~~~~~i~~l~~~~~--~~~~l~~g~~dg~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~  378 (536)
                      .|++||+.++.   ......|...|.+++|+|+  + +++++|+.||.|++||++++..  ...+..|...|.+++|+|.
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~  156 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  156 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence            99999999885   3445568899999999998  6 8999999999999999998743  4566789999999999995


Q ss_pred             ------------CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC---CCeEEEEeCCCcEEEEeC
Q 009380          379 ------------NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS---GSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       379 ------------~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~---g~~l~t~s~dg~I~iwd~  443 (536)
                                  ++.+|++|+.||.|++||++++.........+.+|...|++++|+|+   +.+|++++.||.|++||+
T Consensus       157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence                        24789999999999999998854221223344579999999999999   899999999999999999


Q ss_pred             CCCCcceEE--eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          444 VNFENTSMI--HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       444 ~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      .++......  .........+  ..++|+|+|.+|++|+.||.|++|++..+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v--~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          237 DNEQGPWKKTLLKEEKFPDVL--WRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             SSSSSCCBCCBSSSSCCSSCC--CCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             CCCCCcceeEEeccCCCCCce--EEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            876432221  1111122223  34789999999999999999999999854

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.9e-31  Score=269.95  Aligned_cols=256  Identities=19%  Similarity=0.267  Sum_probs=211.4

Q ss_pred             ccccCCceEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCC------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEE
Q 009380          230 ARIMPGRITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQ------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC  302 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s  302 (536)
                      ...|.+.|++++|+|  + +.+|++|+.+|.|++|++....      .....+..+.+|...|.+++|+|++..+|++|+
T Consensus       124 ~~~h~~~v~~l~~~p--~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          124 KINHEGEVNRARYMP--QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEESSCCSEEEEET--TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEcCCCcEEEEEECC--CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            356899999999999  6 6899999999999999997521      114567788899999999999999844999999


Q ss_pred             CCCeEEEEECCCCe--------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC---ccceeEeccCCCeE
Q 009380          303 YDGLIRLMDAEKEV--------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR---KSATEWLLHEARIN  371 (536)
Q Consensus       303 ~dg~I~vwd~~~~~--------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~h~~~i~  371 (536)
                      .||.|++||+..+.        ......|...|.+++|+|++.++|++++.||.|++||++++   +.+..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            99999999998732        23344788999999999966689999999999999999987   56778889999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCc--
Q 009380          372 TIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVNFEN--  448 (536)
Q Consensus       372 ~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~~~~--  448 (536)
                      +++|+|++..+|++|+.||.|++||++...   .....+..|...|.+++|+|++. +|++++.|+.|+|||+.....  
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~  358 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ  358 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence            999999987799999999999999999743   23455567999999999999885 689999999999999976321  


Q ss_pred             ----------ceEEeccCCCCceeeeeEEEEcCCCC-EEEEEcCCCcEEEEcCCcc
Q 009380          449 ----------TSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       449 ----------~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs~dg~I~v~d~~~~  493 (536)
                                .....+. .....+.  .++|+|++. +|++++.||.|+||++...
T Consensus       359 ~~~~~~~~~~~~~~~~~-~h~~~v~--~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          359 STEDAEDGPPELLFIHG-GHTAKIS--DFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             CHHHHHHCCTTEEEECC-CCSSCEE--EEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CccccccCCcceEEEcC-CCCCCce--EEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                      2222222 2222333  478999999 8999999999999999765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.2e-30  Score=260.05  Aligned_cols=281  Identities=11%  Similarity=0.095  Sum_probs=210.2

Q ss_pred             ccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE-EEEECCCeEE
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI-FTSCYDGLIR  308 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~  308 (536)
                      ...|.+.|++++|+|  ++.+|++|+.+| ++||++..    ........  ...+..+.+.+++ +.+ ++++.|++|+
T Consensus        15 ~~~h~~~V~~v~fs~--dg~~la~g~~~~-~~iw~~~~----~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~d~~v~   84 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ--DQSCLILSTLKS-FEIYNVHP----VAHIMSQE--MRHLSKVRMLHRT-NYVAFVTGVKEVVH   84 (355)
T ss_dssp             ----CCCCCEEEECT--TSSEEEEECSSE-EEEEEETT----EEEEEEEE--CSCCCEEEECTTS-SEEEEECSSTTEEE
T ss_pred             cccCCCceEEEEECC--CCCEEEEEcCCE-EEEEecCC----cceeeeee--cCCeEEEEEcCCC-CEEEEEECCccEEE
Confidence            477999999999999  999999998775 78999875    33333322  2357788898887 655 6778889999


Q ss_pred             EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC-ccceeEeccCCCeEEEEEecCCCCEEEE--
Q 009380          309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR-KSATEWLLHEARINTIDFNPRNPNIMAT--  385 (536)
Q Consensus       309 vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~~~i~~i~~~p~~~~~l~s--  385 (536)
                      +||+.++.....+.+...|.+++|+++.   ++++. ++.|++||+.++ +.+..+..   ....+++++   .++++  
T Consensus        85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~---~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~---~~la~~s  154 (355)
T 3vu4_A           85 IWDDVKKQDVSRIKVDAPVKDLFLSREF---IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN---GLLVYSN  154 (355)
T ss_dssp             EEETTTTEEEEEEECSSCEEEEEECSSE---EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET---TEEEEEE
T ss_pred             EEECCCCcEEEEEECCCceEEEEEcCCE---EEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc---cEEEEeC
Confidence            9999999888888888899999998753   44443 679999999988 77776664   445566776   35555  


Q ss_pred             EeCCCcEEEEeCCCCCCC----C--------CCcceeecccCceeEEEEccCCCeEEEEeCCCc-EEEEeCCCCCcceEE
Q 009380          386 SSTDGTACIWDLRSMATD----K--------PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT-IGIWSGVNFENTSMI  452 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~----~--------~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~-I~iwd~~~~~~~~~~  452 (536)
                      |+.||.|++||++++...    .        +....+.+|...|++++|+|+|++|++++.|++ |+|||+.+++.+..+
T Consensus       155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            588999999999875310    0        014456689999999999999999999999998 999999999988887


Q ss_pred             eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc--eeccC--------------------Cceeeeeee
Q 009380          453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV--ATLQS--------------------PYISAIPCR  510 (536)
Q Consensus       453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~--~~l~~--------------------~~~~~~~~~  510 (536)
                      .... ....+  ..++|+|++++|++++.|+.|++||+..+...  ..+..                    ..... .+.
T Consensus       235 ~~g~-h~~~v--~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  310 (355)
T 3vu4_A          235 RRGL-DRADV--VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVR-GCK  310 (355)
T ss_dssp             ECTT-CCSCE--EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCC-CCE
T ss_pred             EcCC-CCCcE--EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCC-ceE
Confidence            6210 11223  34789999999999999999999999765321  11111                    00000 145


Q ss_pred             EeecCCCCCEEEEEccCCeEEEEec
Q 009380          511 FHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++|+| ++.+|++++.||.+++|++
T Consensus       311 ~a~~~-d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          311 IAWIS-ESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             EEESS-SSEEEEEETTTTEEEEEEE
T ss_pred             EEEeC-CCCEEEEEeCCCeEEEEEE
Confidence            78888 5689999999999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.5e-31  Score=270.22  Aligned_cols=257  Identities=16%  Similarity=0.238  Sum_probs=214.4

Q ss_pred             ceecccccceeeeecCCC-CcccccccccccccccccccceEEeccccc-----------CccccccccCCceEEEEEEe
Q 009380          177 FVIKDEFNGFKTCKDEGL-GVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-----------KPENIARIMPGRITQMKFLP  244 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-----------~~~~~~~~~~~~I~~v~~~p  244 (536)
                      ....+|...|.++.|+|+ +.+++          +++.+|.|.+|++..           .+......|.+.|++++|+|
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~la----------t~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~  191 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIA----------TKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP  191 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEE----------EECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEE----------EECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC
Confidence            345779999999999998 56666          346789999999864           34455678999999999999


Q ss_pred             cCCcc-EEEEEeCCCcEEEEECCCCCCCC---CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----e
Q 009380          245 CSDVR-MVVAGSKLGNITFWNLDSQQDED---NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----V  316 (536)
Q Consensus       245 ~~~~~-~l~tg~~dg~v~iwd~~~~~~~~---~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~  316 (536)
                        ++. +|++|+.||.|++|++.......   .....+.+|...|.+++|+|++..+|++++.||.|++||++++    .
T Consensus       192 --~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          192 --NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             --TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred             --CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence              777 99999999999999998632111   1245677899999999999965589999999999999999876    2


Q ss_pred             EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-CccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                      ...+..|...|.+++|+|++..+|++|+.||.|++||+++ ...+..+..|...|.+++|+|++..+|++++.||.|+||
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw  349 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW  349 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence            3344578899999999999877899999999999999998 566888989999999999999987899999999999999


Q ss_pred             eCCCCCCCC----------CCcceeecccCceeEEEEccCCC-eEEEEeCCCcEEEEeCCC
Q 009380          396 DLRSMATDK----------PEPMKVLSHKRAVHSAYFSPSGS-SLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       396 dl~~~~~~~----------~~~~~~~~~~~~v~~l~~sp~g~-~l~t~s~dg~I~iwd~~~  445 (536)
                      |++......          .......+|...|++++|+|++. +|++++.||.|+||++..
T Consensus       350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            998743211          12233347889999999999998 899999999999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-31  Score=269.49  Aligned_cols=294  Identities=9%  Similarity=0.031  Sum_probs=218.7

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNIT  261 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~  261 (536)
                      -.++|.++.|+|||+.++          +++.|++|+  +....  ....+|+..|++|+|+|  +|       .++.+.
T Consensus        14 ~~~~v~sv~~SpDG~~iA----------Sas~D~TV~--d~~~~--~~l~gh~~~v~~V~FsP--dg-------~~~~~~   70 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYL----------TTFPDISIG--QPKYA--KDINCNSKNLFHVKEFP--LE-------FENKLD   70 (588)
T ss_dssp             CSSSSCCEEECTTSCEEE----------ECSSSEEEE--EECCC--SCCSSBGGGTEEEEEEC--CC-------CCCTTT
T ss_pred             hhccEEEEEECCCCCEEE----------EEcCCceee--ccccc--ceecCCCccEEEEEECC--CC-------CcceEE
Confidence            348999999999999999          458888888  53222  33479999999999999  77       455555


Q ss_pred             EEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC-----ceeEEEecCCC
Q 009380          262 FWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY-----AVFSLSQQPNN  336 (536)
Q Consensus       262 iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~-----~i~~l~~~~~~  336 (536)
                      +|+.+     ......+ .|...|.+++|+|+| .+|++++.||.|++||.++  +...+.|..     .+.+++|+|++
T Consensus        71 ~~~~~-----~~~~~~~-~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG  141 (588)
T 2j04_A           71 FELAQ-----QNGLLNS-QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIE  141 (588)
T ss_dssp             TSCCC-----SSCSSTT-SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSS
T ss_pred             EEeCC-----CceEeec-CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCC
Confidence            55543     2222232 458899999999999 9999999999999999655  333333444     59999999998


Q ss_pred             CCEEEEEECCCeEEEEECCCCcc-------ceeE----eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          337 VNTLYFGEGQGGLNIWDVRSRKS-------ATEW----LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       337 ~~~l~~g~~dg~i~i~d~~~~~~-------~~~~----~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                       ++|++|+.||+|++||+.++..       +.++    .+|...|.+++|+|++   +++++.|++|++||+...... .
T Consensus       142 -~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~  216 (588)
T 2j04_A          142 -SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-P  216 (588)
T ss_dssp             -SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-C
T ss_pred             -CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-c
Confidence             8999999999999999998763       4666    5677899999999976   788888999999999875310 0


Q ss_pred             Cccee-ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE-eccCCCCceeeeeEEEE--cCCCCEEEEEcC
Q 009380          406 EPMKV-LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI-HHNNQTGRWISSFRAIW--GWDDSCVFIGNM  481 (536)
Q Consensus       406 ~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~--s~~g~~l~~gs~  481 (536)
                      ....+ .+|...|.+++|+  |++|++++ +++|++||+.+++..... .|.    ..+..  +.|  +|++..|++++.
T Consensus       217 ~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~----~~V~~--va~~~s~d~~~La~a~e  287 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSL----ENFHI--IPLNHEKESTILLMSNK  287 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCC----SCCCE--EEETTCSSCEEEEECSS
T ss_pred             ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCC----ceEEE--EEeeeCCCCCEEEEEcC
Confidence            11223 2688999999999  68888887 699999999876653222 222    22333  678  999999999999


Q ss_pred             CCcEEEEcCCc------c-----------------ccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380          482 TRTVEVISPAQ------R-----------------RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG  526 (536)
Q Consensus       482 dg~I~v~d~~~------~-----------------~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~  526 (536)
                      +|. ++|....      +                 ..+..+.+   ......++++| +|..+|+++.
T Consensus       288 dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~---~~~I~~va~SP-dG~~lA~~~~  350 (588)
T 2j04_A          288 TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET---TLVIHGISLSP-DGYSIAIVYD  350 (588)
T ss_dssp             CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC---EEEEEEEEECT-TSSEEEEEEE
T ss_pred             CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc---ceEEEEEEECC-CCCEEEEEEe
Confidence            999 8887631      1                 11222211   22235688999 6789998863

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=5.1e-30  Score=258.52  Aligned_cols=306  Identities=11%  Similarity=0.098  Sum_probs=236.6

Q ss_pred             cccccceEEecccccCccccccccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEE
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGI  288 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l  288 (536)
                      .++.++.|.+|++..........+...+.+++|+|  ++.+| ++++.|+.|++||+.+    +..+..+..|. .+.++
T Consensus         7 s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~----~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISP--DGTKVYVANAHSNDVSIIDTAT----NNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT--TSSEEEEEEGGGTEEEEEETTT----TEEEEEEECSS-SEEEE
T ss_pred             EcCCCCEEEEEECCCCeEEEEeecCCCcceEEECC--CCCEEEEECCCCCeEEEEECCC----CeEEEEEECCC-Cccce
Confidence            46778999999986543322223345699999999  88876 6777999999999987    56666666555 89999


Q ss_pred             EEecCCCCEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC
Q 009380          289 VTQQYCLSKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE  367 (536)
Q Consensus       289 ~~~~~~~~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~  367 (536)
                      +|+|++ ++|+ +++.++.|++||+.+++......+...+.+++|+|++..++++++.++.|++||+.+++.+..+..+ 
T Consensus        80 ~~spdg-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-  157 (391)
T 1l0q_A           80 AVSPDG-KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-  157 (391)
T ss_dssp             EECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred             EECCCC-CEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence            999999 7665 5556799999999999888777777889999999998434477888999999999999888887754 


Q ss_pred             CCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe---CCCcEEEEeCC
Q 009380          368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGV  444 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s---~dg~I~iwd~~  444 (536)
                      ..+.+++|+|++..++++++.++.|++||++++     .......+...+.+++|+|++++|++++   .++.|++||+.
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-----eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            567999999988655578888999999999875     3445556778899999999999999888   68999999999


Q ss_pred             CCCcceEEeccCCCCceeeeeEEEEcCCCCEE-EEEcCCCcEEEEcCCccccceeccCCceeee---------------e
Q 009380          445 NFENTSMIHHNNQTGRWISSFRAIWGWDDSCV-FIGNMTRTVEVISPAQRRSVATLQSPYISAI---------------P  508 (536)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~---------------~  508 (536)
                      +++....+....    .  ...+.|+|++++| ++++.|+.|++||+.+++.+..+..+.....               .
T Consensus       233 ~~~~~~~~~~~~----~--~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (391)
T 1l0q_A          233 TNKITARIPVGP----D--PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPS  306 (391)
T ss_dssp             TTEEEEEEECCS----S--EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCB
T ss_pred             CCeEEEEEecCC----C--ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccc
Confidence            887776665422    1  2347899999987 5668899999999999988877765432210               1


Q ss_pred             eeEeecCCCC-------CEEEEEccCCeEEEEec
Q 009380          509 CRFHAHPHQV-------GTLAGATGGGQVYVWTS  535 (536)
Q Consensus       509 ~~~~~~p~~~-------~~lasgs~Dg~v~iW~~  535 (536)
                      ..+...+..+       -.+...+.|..+++|++
T Consensus       307 a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  340 (391)
T 1l0q_A          307 ADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF  340 (391)
T ss_dssp             CCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred             cccccccccccccccceEEEEeCCCCceEEEEEC
Confidence            1222222111       34667778899999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.6e-30  Score=263.32  Aligned_cols=329  Identities=8%  Similarity=0.017  Sum_probs=245.7

Q ss_pred             ccceeeee---cCCCCcccccccccccc----cccccccceEEeccccc--Ccccccc--ccCCceEEEEEEecCCccEE
Q 009380          183 FNGFKTCK---DEGLGVGSCDLIKGVVK----TEKIEVGSCVDIGSLTL--KPENIAR--IMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       183 ~~~v~~~~---~s~~~~~l~~~~~~~~~----~~~~~~dg~v~lw~~~~--~~~~~~~--~~~~~I~~v~~~p~~~~~~l  251 (536)
                      ..++..+.   +++++..+.........    ...+..++.+.||.++.  .......  .+...+.+++|+|  ++.++
T Consensus        60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~  137 (433)
T 3bws_A           60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFID--NTRLA  137 (433)
T ss_dssp             TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESS--SSEEE
T ss_pred             CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeC--CCeEE
Confidence            34555666   77777665432211111    01234445444554433  2111111  2245677999999  88999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceE-----EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCC
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIY-----LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEY  325 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~-----~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~  325 (536)
                      ++++.++.|++||+.+    +....     .+.+|...|.+++|++++ .++++++.|+.|++||+.++.....+ .+..
T Consensus       138 ~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~  212 (433)
T 3bws_A          138 IPLLEDEGMDVLDINS----GQTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKTLAYKATVDLTGK  212 (433)
T ss_dssp             EEBTTSSSEEEEETTT----CCEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred             EEeCCCCeEEEEECCC----CeEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence            9999999999999987    44444     456889999999999998 89999999999999999987665444 5778


Q ss_pred             ceeEEEecCCCCCEE-EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe--------CCCcEEEEe
Q 009380          326 AVFSLSQQPNNVNTL-YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS--------TDGTACIWD  396 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s--------~dg~i~iwd  396 (536)
                      .+.+++|+|++ ..+ ++++.++.|++||+++++.+..+.. ...+.+++|+|++ .++++++        .||.|++||
T Consensus       213 ~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d  289 (433)
T 3bws_A          213 WSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYS  289 (433)
T ss_dssp             SEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEE
T ss_pred             CeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEE
Confidence            99999999998 555 4555899999999999988777764 4569999999988 5777776        588999999


Q ss_pred             CCCCCCCCCCcceeecccCceeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380          397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC  475 (536)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l-~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  475 (536)
                      ++++     .......|...+.+++|+|+++.+ ++++.|+.|++||+.+++....+.+..    .+  ..++|+|+|++
T Consensus       290 ~~~~-----~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~----~~--~~~~~s~dg~~  358 (433)
T 3bws_A          290 MDKE-----KLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFD----KP--NTIALSPDGKY  358 (433)
T ss_dssp             TTTT-----EEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSS----SE--EEEEECTTSSE
T ss_pred             CCCC-----cEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCC----CC--CeEEEcCCCCE
Confidence            9875     344555677789999999999755 566889999999999887776665322    22  34789999999


Q ss_pred             EEEEcC---------------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc-cCCeEEEEecC
Q 009380          476 VFIGNM---------------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTSD  536 (536)
Q Consensus       476 l~~gs~---------------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~d  536 (536)
                      |++++.               ||.|++||..+++.+..+..+.   ....++|+| ++.+|++++ .||.|++|+++
T Consensus       359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN---QPTGLDVSP-DNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS---SEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred             EEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC---CCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence            888876               5699999999998888877532   235688999 568888776 59999999975

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.7e-31  Score=287.54  Aligned_cols=257  Identities=14%  Similarity=0.160  Sum_probs=212.7

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc---CccccccccCCceEEEEEEecCCccEEEE
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---KPENIARIMPGRITQMKFLPCSDVRMVVA  253 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---~~~~~~~~~~~~I~~v~~~p~~~~~~l~t  253 (536)
                      .++.+|.+.|.++.|+|+++.++.          ++.||.|.+|++..   ........|.+.|++++|+|..++.+|++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~lat----------g~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s   72 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLAT----------CSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS   72 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEE----------EETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEE----------EECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEE
Confidence            467899999999999999998884          57889999999852   23345578999999999999323999999


Q ss_pred             EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC--CCCEEEEEECCCeEEEEECCCC---eEEEeecCCCcee
Q 009380          254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY--CLSKIFTSCYDGLIRLMDAEKE---VFDLVYSSEYAVF  328 (536)
Q Consensus       254 g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~I~vwd~~~~---~~~~~~~~~~~i~  328 (536)
                      |+.||.|++||+.++.  ...+..+.+|...|.+++|+|+  + .+|++|+.||.|++||+.++   .......|...|.
T Consensus        73 ~s~Dg~I~vwd~~~~~--~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           73 CSYDGKVLIWKEENGR--WSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             EETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             EeCCCeEEEEECCCCc--ccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence            9999999999998721  1267788899999999999999  7 99999999999999999876   3345567889999


Q ss_pred             EEEecCC------------CCCEEEEEECCCeEEEEECCCCc----cceeEeccCCCeEEEEEecCC--CCEEEEEeCCC
Q 009380          329 SLSQQPN------------NVNTLYFGEGQGGLNIWDVRSRK----SATEWLLHEARINTIDFNPRN--PNIMATSSTDG  390 (536)
Q Consensus       329 ~l~~~~~------------~~~~l~~g~~dg~i~i~d~~~~~----~~~~~~~h~~~i~~i~~~p~~--~~~l~s~s~dg  390 (536)
                      +++|+|.            ++.++++|+.||.|++||++++.    ....+.+|...|.+++|+|++  +.+|++|+.||
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            9999995            23799999999999999999873    456677899999999999983  47999999999


Q ss_pred             cEEEEeCCCCCCCC-CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          391 TACIWDLRSMATDK-PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       391 ~i~iwdl~~~~~~~-~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      .|++||++++.... ........|...|++++|+|+|.+|++++.||.|++||+...
T Consensus       230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~  286 (753)
T 3jro_A          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (753)
T ss_dssp             CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred             EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence            99999999864211 122333468899999999999999999999999999998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=3.2e-30  Score=256.94  Aligned_cols=284  Identities=14%  Similarity=0.106  Sum_probs=208.6

Q ss_pred             ecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEE-EEEeCC
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMV-VAGSKL  257 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~d  257 (536)
                      +..|.+.|.++.|+|||..++..          ..+ .+++|+...... ....+...+..+++.+  +++++ ++|+.|
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g----------~~~-~~~iw~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~d   80 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILS----------TLK-SFEIYNVHPVAH-IMSQEMRHLSKVRMLH--RTNYVAFVTGVK   80 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEE----------CSS-EEEEEEETTEEE-EEEEECSCCCEEEECT--TSSEEEEECSST
T ss_pred             cccCCCceEEEEECCCCCEEEEE----------cCC-EEEEEecCCcce-eeeeecCCeEEEEEcC--CCCEEEEEECCc
Confidence            47899999999999999998854          333 467898643322 2233334688899998  66666 567888


Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC-eEEEeecCCCceeEEEecCCC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE-VFDLVYSSEYAVFSLSQQPNN  336 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~  336 (536)
                      ++|+|||+.+    +..+..+. |...|.++.|+++   .++++ .|+.|++||+.++ +....+..  +...+++++  
T Consensus        81 ~~v~iWd~~~----~~~~~~~~-~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--  147 (355)
T 3vu4_A           81 EVVHIWDDVK----KQDVSRIK-VDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--  147 (355)
T ss_dssp             TEEEEEETTT----TEEEEEEE-CSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--
T ss_pred             cEEEEEECCC----CcEEEEEE-CCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--
Confidence            9999999987    56666665 6679999999875   34444 4889999999887 44333322  444566666  


Q ss_pred             CCEEEE--EECCCeEEEEECCCCc----------------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCc-EEEEeC
Q 009380          337 VNTLYF--GEGQGGLNIWDVRSRK----------------SATEWLLHEARINTIDFNPRNPNIMATSSTDGT-ACIWDL  397 (536)
Q Consensus       337 ~~~l~~--g~~dg~i~i~d~~~~~----------------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~-i~iwdl  397 (536)
                       .++++  |+.+|.|++||++++.                .+..+.+|...|++++|+|++ .+|++|+.||+ |++||+
T Consensus       148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEET
T ss_pred             -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEEC
Confidence             35555  5789999999999865                267888999999999999987 79999999998 999999


Q ss_pred             CCCCCCCCCcceee-c-ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC------------------C
Q 009380          398 RSMATDKPEPMKVL-S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN------------------Q  457 (536)
Q Consensus       398 ~~~~~~~~~~~~~~-~-~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~------------------~  457 (536)
                      ++++    ....+. + |...|++++|+|+|++|++++.|++|+|||+.............                  .
T Consensus       226 ~~~~----~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (355)
T 3vu4_A          226 EDGV----LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLS  301 (355)
T ss_dssp             TTCC----EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECC
T ss_pred             CCCc----EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEec
Confidence            9863    444444 4 99999999999999999999999999999997653211110000                  0


Q ss_pred             CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          458 TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       458 ~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      .........++|++++++|++++.||.+++|++..+..
T Consensus       302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred             cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence            00000012378999999999999999999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.5e-31  Score=269.01  Aligned_cols=268  Identities=9%  Similarity=0.033  Sum_probs=204.4

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      +.....|.+|+|+|  ||.++|+++.|++|+  |...    ..   .+.+|...|.+++|+|+|        .++.+.+|
T Consensus        12 ~~~~~~v~sv~~Sp--DG~~iASas~D~TV~--d~~~----~~---~l~gh~~~v~~V~FsPdg--------~~~~~~~~   72 (588)
T 2j04_A           12 KEFEDWKNNLTWAR--DGTLYLTTFPDISIG--QPKY----AK---DINCNSKNLFHVKEFPLE--------FENKLDFE   72 (588)
T ss_dssp             CCCSSSSCCEEECT--TSCEEEECSSSEEEE--EECC----CS---CCSSBGGGTEEEEEECCC--------CCCTTTTS
T ss_pred             hHhhccEEEEEECC--CCCEEEEEcCCceee--cccc----cc---eecCCCccEEEEEECCCC--------CcceEEEE
Confidence            45568999999999  999999999999999  6443    33   337899999999999987        56666666


Q ss_pred             ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC-----CeEEEEEecCCCCEEEE
Q 009380          311 DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA-----RINTIDFNPRNPNIMAT  385 (536)
Q Consensus       311 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~-----~i~~i~~~p~~~~~l~s  385 (536)
                      +.+..... ...+...|.+++|+|+| ..|++++.||.|++||...  ++..+. |..     .|.+++|+|+| ++|++
T Consensus        73 ~~~~~~~~-~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG-~~LAs  146 (588)
T 2j04_A           73 LAQQNGLL-NSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVV  146 (588)
T ss_dssp             CCCSSCSS-TTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS-SCEEE
T ss_pred             eCCCceEe-ecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC-CEEEE
Confidence            65433322 22457899999999999 8999999999999999544  555666 665     49999999988 79999


Q ss_pred             EeCCCcEEEEeCCCCCCCCC---Cccee----ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc---eEEecc
Q 009380          386 SSTDGTACIWDLRSMATDKP---EPMKV----LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT---SMIHHN  455 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~---~~~~~----~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~---~~~~~~  455 (536)
                      |+.||+|+|||+..+....+   ....+    .+|...|.+++|+|+|  +++++.|++|++||+.+....   .++...
T Consensus       147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~  224 (588)
T 2j04_A          147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNA  224 (588)
T ss_dssp             EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECC
T ss_pred             EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccc
Confidence            99999999999988531111   12222    4678899999999999  888999999999999877643   234211


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEee--cCCCCCEEEEEccCCeEEEE
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHA--HPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~--~p~~~~~lasgs~Dg~v~iW  533 (536)
                        ...  .+..++|+  |++|++++ ++.|++||+.+++......+|....  ..+.+  +| ++..|++++.||+ ++|
T Consensus       225 --h~~--~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V--~~va~~~s~-d~~~La~a~edG~-klw  293 (588)
T 2j04_A          225 --SRR--KITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENF--HIIPLNHEK-ESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             --CSS--CCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCC--CEEEETTCS-SCEEEEECSSCEE-EEE
T ss_pred             --ccC--cEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceE--EEEEeeeCC-CCCEEEEEcCCCC-EEE
Confidence              111  23347788  58999887 6999999999886633332544333  35777  77 5689999999999 999


Q ss_pred             ecC
Q 009380          534 TSD  536 (536)
Q Consensus       534 ~~d  536 (536)
                      ..+
T Consensus       294 ~~d  296 (588)
T 2j04_A          294 LED  296 (588)
T ss_dssp             ESS
T ss_pred             eec
Confidence            864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=259.65  Aligned_cols=241  Identities=11%  Similarity=0.034  Sum_probs=192.3

Q ss_pred             ccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECC--CCCCCCCceEEec--cCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          232 IMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLD--SQQDEDNGIYLFR--THLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~--~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      .|.+.|++++|+|  ++++| ++|+.||.|+||++.  +    +..+..+.  .|...|.+++|+|++ .+|++++.||.
T Consensus       100 ~~~~~v~~~~~s~--d~~~l~~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~  172 (450)
T 2vdu_B          100 PIYSYIRNLRLTS--DESRLIACADSDKSLLVFDVDKTS----KNVLKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGD  172 (450)
T ss_dssp             CCCCCEEEEEECT--TSSEEEEEEGGGTEEEEEEECSSS----SSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             ccCCceEEEEEcC--CCCEEEEEECCCCeEEEEECcCCC----CceeeeeecccCCCCceEEEEcCCC-CEEEEEeCCCc
Confidence            3455799999999  99986 899999999999998  5    55666665  677899999999998 99999999999


Q ss_pred             EEEEECCCCeEE-----EeecCCCceeEEEecCC---CCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEec
Q 009380          307 IRLMDAEKEVFD-----LVYSSEYAVFSLSQQPN---NVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNP  377 (536)
Q Consensus       307 I~vwd~~~~~~~-----~~~~~~~~i~~l~~~~~---~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p  377 (536)
                      |++|++.++...     .+.+|...|.+++|+|+   + .+|++|+.|+.|++||+++++.+.. +.+|...|.+++|+ 
T Consensus       173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-  250 (450)
T 2vdu_B          173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-  250 (450)
T ss_dssp             EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-
T ss_pred             EEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-
Confidence            999999876543     45578899999999998   6 7999999999999999999988877 45899999999999 


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-------------------------cccCceeEEEEccCCCeEEEE
Q 009380          378 RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-------------------------SHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       378 ~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-------------------------~~~~~v~~l~~sp~g~~l~t~  432 (536)
                      ++ .+|++++.|+.|++||+++++    ....+.                         .....|.+++|+|++++|+++
T Consensus       251 d~-~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~  325 (450)
T 2vdu_B          251 KD-YLLLSAGGDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF  325 (450)
T ss_dssp             ST-TEEEEEESSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred             CC-CEEEEEeCCCeEEEEECCCCc----EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence            66 799999999999999999864    122221                         234578999999999999999


Q ss_pred             e-CCCcEEEEeC--CCC---CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC------CCcEEEEcCCc
Q 009380          433 S-FDDTIGIWSG--VNF---ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM------TRTVEVISPAQ  492 (536)
Q Consensus       433 s-~dg~I~iwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~------dg~I~v~d~~~  492 (536)
                      + .|+.|+||++  ...   .....+...    ..+  ..++|+|++.++++++.      ++.|.+|.+..
T Consensus       326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~----~~v--~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          326 VEATKCIIILEMSEKQKGDLALKQIITFP----YNV--ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             ETTCSEEEEEEECSSSTTCEEEEEEEECS----SCE--EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ECCCCeEEEEEeccCCCCceeeccEeccC----Cce--EEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            9 8999999999  444   333333221    223  34779996544444443      45588887643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.8e-30  Score=253.26  Aligned_cols=261  Identities=13%  Similarity=0.049  Sum_probs=198.2

Q ss_pred             cccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC-----CCCCceEEe-ccCCC
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ-----DEDNGIYLF-RTHLG  283 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~-----~~~~~~~~~-~~h~~  283 (536)
                      +++.||.|++||+.... .+.......|.++.|+|  +   +++|+.|++|++|+.....     .....+..+ .+|..
T Consensus        53 sg~~Dg~v~iwd~~~~~-~~~~~~~~~v~~~~~~~--~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (343)
T 3lrv_A           53 CRCEDGALHFTQLKDSK-TITTITTPNPRTGGEHP--A---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSAN  126 (343)
T ss_dssp             EEEETTEEEEEEESSSS-CEEEEEEECCCTTCCCC--S---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSS
T ss_pred             EECCCCcEEEEECCCCc-EEEEEecCCceeeeeCC--c---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCC
Confidence            67899999999985432 22333367888999999  5   9999999999999876310     013323333 36778


Q ss_pred             CEEEEEEec--CCCCEEEEEECCCeEEEEECCCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc
Q 009380          284 PISGIVTQQ--YCLSKIFTSCYDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS  359 (536)
Q Consensus       284 ~V~~l~~~~--~~~~~l~s~s~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~  359 (536)
                      .|.+++|+|  ++ .+|++++.||+|++||++++......  .+...|.+++|+|++ .+|++|+.||.|++||+++++.
T Consensus       127 ~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg-~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          127 EIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS-LLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             CEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS-CEEEEECTTSCEEEEESSCTTS
T ss_pred             CEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCCC
Confidence            999999999  88 99999999999999999998776544  345679999999998 8999999999999999999988


Q ss_pred             c-eeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee--EEEEccCCCeEEEEeC-
Q 009380          360 A-TEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH--SAYFSPSGSSLATTSF-  434 (536)
Q Consensus       360 ~-~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~--~l~~sp~g~~l~t~s~-  434 (536)
                      + ..+.. |...|++++|+|++ .+|++++ |+.|++||+++.+... .......|...+.  +++|+|+|++|++++. 
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~  281 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTL-AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE  281 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCB-SSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred             CccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcce-eecccccccccccceEEEECCCCCEEEEecCC
Confidence            7 78887 99999999999987 7899999 5599999999864211 1111112334444  6999999999999998 


Q ss_pred             CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC---CCCEEEEEcCCCcEEEEcC
Q 009380          435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW---DDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~~gs~dg~I~v~d~  490 (536)
                      |+.|+||++.........       .  ....+.|++   +...+++++.|+.+.++-.
T Consensus       282 d~~i~v~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          282 SNSLTIYKFDKKTKNWTK-------D--EESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             TTEEEEEEECTTTCSEEE-------E--EEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEcccccceEe-------c--CceeEecCccccccceeEEEecCCceEEEEe
Confidence            999999998765443332       1  112255777   7889999999999888753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=6.9e-29  Score=250.23  Aligned_cols=266  Identities=13%  Similarity=0.111  Sum_probs=215.6

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEYA  326 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~~  326 (536)
                      +.++++++.|+.|++||+.+    +..+..+..|. .+.+++|+|++ .+| ++++.|+.|++||+.+++......+...
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~----~~~~~~~~~~~-~~~~~~~s~dg-~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~   75 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTS----NKVTATIPVGS-NPMGAVISPDG-TKVYVANAHSNDVSIIDTATNNVIATVPAGSS   75 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTT----TEEEEEEECSS-SEEEEEECTTS-SEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             CEEEEEcCCCCEEEEEECCC----CeEEEEeecCC-CcceEEECCCC-CEEEEECCCCCeEEEEECCCCeEEEEEECCCC
Confidence            35788999999999999987    66777777765 58999999999 665 6777999999999999988877777779


Q ss_pred             eeEEEecCCCCCEE-EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          327 VFSLSQQPNNVNTL-YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       327 i~~l~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                      +.+++|+|++ +.| +++..++.|++||+.+++.+..+.. ...+.+++|+|++..++++++.|+.|++||+.+++    
T Consensus        76 v~~~~~spdg-~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~----  149 (391)
T 1l0q_A           76 PQGVAVSPDG-KQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA----  149 (391)
T ss_dssp             EEEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----
T ss_pred             ccceEECCCC-CEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc----
Confidence            9999999998 555 4555679999999999988877764 45789999999885455888889999999998753    


Q ss_pred             CcceeecccCceeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc---C
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN---M  481 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l-~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs---~  481 (536)
                       ......+...+.+++|+|++++| ++++.++.|++||+.+++....+.+..    .+  ..++|+|++++|++++   .
T Consensus       150 -~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~--~~~~~~~~g~~l~~~~~~~~  222 (391)
T 1l0q_A          150 -VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA----AP--SGIAVNPEGTKAYVTNVDKY  222 (391)
T ss_dssp             -EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS----EE--EEEEECTTSSEEEEEEECSS
T ss_pred             -EEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC----Cc--cceEECCCCCEEEEEecCcC
Confidence             33444445677999999999887 567788999999999887776665422    22  3477999999999888   6


Q ss_pred             CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEE-EEEccCCeEEEEecC
Q 009380          482 TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD  536 (536)
Q Consensus       482 dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l-asgs~Dg~v~iW~~d  536 (536)
                      ++.|++||+.+++.+..+..+..   ...+.|+| ++.+| ++++.|+.|++||++
T Consensus       223 ~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          223 FNTVSMIDTGTNKITARIPVGPD---PAGIAVTP-DGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSS---EEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             CCcEEEEECCCCeEEEEEecCCC---ccEEEEcc-CCCEEEEEcCCCCEEEEEECC
Confidence            89999999999988888876442   24678888 45666 788999999999974

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=7.5e-30  Score=257.89  Aligned_cols=295  Identities=14%  Similarity=0.081  Sum_probs=199.2

Q ss_pred             CCceEEEEEEec-CCccEEEEEeCCCcEEEEECCCCCCCC---C--ceEEeccCCCCEEEEEEe----------------
Q 009380          234 PGRITQMKFLPC-SDVRMVVAGSKLGNITFWNLDSQQDED---N--GIYLFRTHLGPISGIVTQ----------------  291 (536)
Q Consensus       234 ~~~I~~v~~~p~-~~~~~l~tg~~dg~v~iwd~~~~~~~~---~--~~~~~~~h~~~V~~l~~~----------------  291 (536)
                      +...+++.|... .+...|++++.++.|.+|+........   .  .......|...+..+.|+                
T Consensus        15 ~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (393)
T 4gq1_A           15 NVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV   94 (393)
T ss_dssp             TCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred             CCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence            344566777421 133334444457789999765321100   0  000111233444444443                


Q ss_pred             ----cCCCCEEEEEECCCeEEEEECCCCeEEE------eecCCCceeEEEecC--------CCCCEEEEEECCCeEEEEE
Q 009380          292 ----QYCLSKIFTSCYDGLIRLMDAEKEVFDL------VYSSEYAVFSLSQQP--------NNVNTLYFGEGQGGLNIWD  353 (536)
Q Consensus       292 ----~~~~~~l~s~s~dg~I~vwd~~~~~~~~------~~~~~~~i~~l~~~~--------~~~~~l~~g~~dg~i~i~d  353 (536)
                          +++ .+|++++.|++|++||+.++....      +.+|...|.+++|+|        ++ ++|++|+.|++|+|||
T Consensus        95 ~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd  172 (393)
T 4gq1_A           95 NSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWR  172 (393)
T ss_dssp             --CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEE
T ss_pred             eecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEE
Confidence                333 689999999999999998875432      236899999999987        45 7999999999999999


Q ss_pred             CCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC---------------------cceeec
Q 009380          354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE---------------------PMKVLS  412 (536)
Q Consensus       354 ~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~---------------------~~~~~~  412 (536)
                      ++++.++..+..|...|.+++|+|++.++|++|+.||+|++||+++++.....                     .....+
T Consensus       173 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  252 (393)
T 4gq1_A          173 LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG  252 (393)
T ss_dssp             EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred             CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence            99988888888899999999999988779999999999999999886421100                     011235


Q ss_pred             ccCceeEEEEc-cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC---------Cce----eeeeEEEEcC--CCCEE
Q 009380          413 HKRAVHSAYFS-PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT---------GRW----ISSFRAIWGW--DDSCV  476 (536)
Q Consensus       413 ~~~~v~~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~---------~~~----~~~~~~~~s~--~g~~l  476 (536)
                      |...+.++.|+ |++..|++++.|+++++||+........+......         ...    .....+.|++  ++.++
T Consensus       253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFA  332 (393)
T ss_dssp             CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEE
T ss_pred             ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEE
Confidence            78889999987 69999999999999999999876554443211000         000    0011133444  45567


Q ss_pred             EEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          477 FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      ++|+.|+.|++||+.+++.+..+..++..+  ..++|+| ++++||+++.|| +.+|.
T Consensus       333 ~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V--~svafsp-dG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYEKDSNSIPIQLGMPI--VDFCWHQ-DGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             EEETTTTEEEEEETTCTTCCEEEEECSSCE--EEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEecCCCCcE--EEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence            888999999999999998888777666543  4789999 689999999877 44444

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=1.7e-28  Score=250.93  Aligned_cols=279  Identities=10%  Similarity=0.015  Sum_probs=228.3

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCccc------cccccCCceEEEEEEecCCccEEEEEeCC
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN------IARIMPGRITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~------~~~~~~~~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      ..+.++.|+|++.+++.          +..++.|.+||+......      ....|.+.|.+++|+|  ++.++++++.|
T Consensus       123 ~~~~~~~~s~~~~~~~~----------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d  190 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIP----------LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQA  190 (433)
T ss_dssp             SCBCCCEESSSSEEEEE----------BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGG
T ss_pred             CCceEEEEeCCCeEEEE----------eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCC
Confidence            44668889996666663          356778999997543221      2346788999999999  99999999999


Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE-EEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF-TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN  336 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~-s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  336 (536)
                      +.|++||+.+    ...+..+..|...+.+++|+|++ ..++ +++.|+.|++||+.++...........+.+++|+|++
T Consensus       191 ~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  265 (433)
T 3bws_A          191 NAVHVFDLKT----LAYKATVDLTGKWSKILLYDPIR-DLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG  265 (433)
T ss_dssp             TEEEEEETTT----CCEEEEEECSSSSEEEEEEETTT-TEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS
T ss_pred             CEEEEEECCC----ceEEEEEcCCCCCeeEEEEcCCC-CEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC
Confidence            9999999987    67788888999999999999998 6664 5558999999999999887777777889999999998


Q ss_pred             CCEEEEEE--------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc
Q 009380          337 VNTLYFGE--------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM  408 (536)
Q Consensus       337 ~~~l~~g~--------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~  408 (536)
                       +.+++++        .||.|++||+++++.+..+ .|...+.+++|+|++..++++++.|+.|++||+.++     ...
T Consensus       266 -~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-----~~~  338 (433)
T 3bws_A          266 -KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-----KVQ  338 (433)
T ss_dssp             -SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-----EEE
T ss_pred             -CEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-----cEE
Confidence             6788777        5889999999998876665 366689999999988667788899999999999874     344


Q ss_pred             eeecccCceeEEEEccCCCeEEEEeC---------------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC
Q 009380          409 KVLSHKRAVHSAYFSPSGSSLATTSF---------------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD  473 (536)
Q Consensus       409 ~~~~~~~~v~~l~~sp~g~~l~t~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  473 (536)
                      ....+...+.+++|+|+|++|++++.               ||.|++||+.+++....+...    ..+  ..++|+|+|
T Consensus       339 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~----~~~--~~~~~s~dg  412 (433)
T 3bws_A          339 KSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG----NQP--TGLDVSPDN  412 (433)
T ss_dssp             EEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS----SSE--EEEEECTTS
T ss_pred             EEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC----CCC--ceEEEcCCC
Confidence            45567888999999999998888876               579999999988877776542    122  347899999


Q ss_pred             CEEEEEcC-CCcEEEEcCCc
Q 009380          474 SCVFIGNM-TRTVEVISPAQ  492 (536)
Q Consensus       474 ~~l~~gs~-dg~I~v~d~~~  492 (536)
                      ++|++++. |+.|++|++.+
T Consensus       413 ~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          413 RYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CEEEEEETTTTEEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEEecC
Confidence            99988765 99999999764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2.7e-28  Score=233.96  Aligned_cols=285  Identities=11%  Similarity=0.075  Sum_probs=194.5

Q ss_pred             eEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE-EEEC--
Q 009380          237 ITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR-LMDA--  312 (536)
Q Consensus       237 I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~-vwd~--  312 (536)
                      +.++.|-..... .-|++++ ...|++|+..+. ...+.++++..|..+|..|.+.|+..++++.+-..=.+. ++-+  
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDA-WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSS-SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCC-ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            555656442111 2466666 469999999873 123789999999999999999998756655553322211 1111  


Q ss_pred             --CC---CeEEEeecCCCceeEEEecCCCCCEEEEEE--CCCeEEEEECC-CCccceeEeccCCCeEEEEEec---CCCC
Q 009380          313 --EK---EVFDLVYSSEYAVFSLSQQPNNVNTLYFGE--GQGGLNIWDVR-SRKSATEWLLHEARINTIDFNP---RNPN  381 (536)
Q Consensus       313 --~~---~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~-~~~~~~~~~~h~~~i~~i~~~p---~~~~  381 (536)
                        +.   +.....-++...|.++   +++ +++.+++  .|+.|++|++. +++.+..+.+|...++.++|+|   ++ .
T Consensus       120 spd~~~~~~~l~s~g~~~~v~~l---~~g-~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~-~  194 (356)
T 2w18_A          120 SSDDESEKQVLLKSGNIKAVLGL---TKR-RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQ-E  194 (356)
T ss_dssp             ------CCEEEEEEEEEEEEEEE---TTT-EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETST-T
T ss_pred             CCCccccccEEEeCCCeEEEEec---CCC-cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCC-c
Confidence              10   1222222333344444   444 4444433  49999999994 5788888889999999999998   44 6


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecc---cCceeEEEEccCCCeE------------EEEeCCCcEEEEeCCCC
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSH---KRAVHSAYFSPSGSSL------------ATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~---~~~v~~l~~sp~g~~l------------~t~s~dg~I~iwd~~~~  446 (536)
                      +|++++.|++|+|||+.+++    ....+.+|   ...+.+++|+|+|.++            ++|+.|++|++||..++
T Consensus       195 ~LaSgS~D~TIkIWDl~TGk----~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          195 ALLGTTIMNNIVIWNLKTGQ----LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             EEEEEETTSEEEEEETTTCC----EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             eEEEecCCCcEEEEECCCCc----EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            99999999999999999864    33444443   3467788999999876            56788999999999988


Q ss_pred             CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380          447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG  526 (536)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~  526 (536)
                      +.+..+....+.++....+...+  ++.++++|+.|++|+|||+.+++++.++.+|+...+ ..++|+| ++.+|++|+.
T Consensus       271 k~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vv-s~vafSP-DG~~LaSGS~  346 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHW-SFVKWSG-TDSHLLAGQK  346 (356)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCC-CEEEECS-SSSEEEEECT
T ss_pred             EEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeE-EEEEECC-CCCEEEEEEC
Confidence            77665532112222111222333  377899999999999999999999999988766554 3478999 6799999999


Q ss_pred             CCeEEEEecC
Q 009380          527 GGQVYVWTSD  536 (536)
Q Consensus       527 Dg~v~iW~~d  536 (536)
                      |++|+|||+.
T Consensus       347 D~TIklWd~~  356 (356)
T 2w18_A          347 DGNIFVYHYS  356 (356)
T ss_dssp             TSCEEEEEEC
T ss_pred             CCcEEEecCC
Confidence            9999999963

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.9e-28  Score=247.59  Aligned_cols=245  Identities=14%  Similarity=0.047  Sum_probs=172.2

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEec--------CCCCEEEEEEC
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQ--------YCLSKIFTSCY  303 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~--------~~~~~l~s~s~  303 (536)
                      |...+....+.+  ++.+|++|+.|++|+|||+...... ...+..+.+|.+.|++++|+|        ++ ++|++|+.
T Consensus        88 ~~~~~~~~~~~~--~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~  164 (393)
T 4gq1_A           88 HDGDGNVNSSPV--YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGD  164 (393)
T ss_dssp             ---------CCE--EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEET
T ss_pred             cCCCcceeecCC--CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEEC
Confidence            344445555556  7789999999999999999863210 112345689999999999998        66 89999999


Q ss_pred             CCeEEEEECCCC-eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--------------------
Q 009380          304 DGLIRLMDAEKE-VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--------------------  362 (536)
Q Consensus       304 dg~I~vwd~~~~-~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--------------------  362 (536)
                      |++|+|||+.++ .....+.|...+.+++|+|++.++|++|+.||+|++||+++++....                    
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            999999999765 45567789999999999999867899999999999999998754322                    


Q ss_pred             -----EeccCCCeEEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC------------------cee
Q 009380          363 -----WLLHEARINTIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR------------------AVH  418 (536)
Q Consensus       363 -----~~~h~~~i~~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~------------------~v~  418 (536)
                           ..+|...+.++.|. |++ ..|++++.|+++++||+.....    ...+..|..                  ...
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANND----YNEISDSTMKLGPKNLLPNVQGISLFPSLL  319 (393)
T ss_dssp             C------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSS
T ss_pred             eeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCC----CceEeeecCccccEEEccccccccccCcce
Confidence                 13577889999998 555 7999999999999999987542    111112222                  222


Q ss_pred             EEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          419 SAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       419 ~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .+.|+|  ++.++++|+.||.|+|||+.+++....+....   ..+.  .++|+|||++|++++.+| +.+|.+.
T Consensus       320 ~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~---~~V~--svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          320 GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG---MPIV--DFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS---SCEE--EEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC---CcEE--EEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            334444  34466778889999999999888776653222   2333  488999999999998766 6566543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.7e-26  Score=220.16  Aligned_cols=244  Identities=10%  Similarity=-0.037  Sum_probs=172.9

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-------cccccccCCceEEEEEEecCC
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-------ENIARIMPGRITQMKFLPCSD  247 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-------~~~~~~~~~~I~~v~~~p~~~  247 (536)
                      ....+.+|...|..+.+.||..-|....=+.+.+        -.++.+...+       ..+..+|...|.++   +  +
T Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~--~  144 (356)
T 2w18_A           78 KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI--------REIRALFCSSDDESEKQVLLKSGNIKAVLGL---T--K  144 (356)
T ss_dssp             EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE--------EEEEEECC------CCEEEEEEEEEEEEEEE---T--T
T ss_pred             eeEEEeccCceeEEEEEcCcccceeeeeeccccc--------cceEEEEECCCccccccEEEeCCCeEEEEec---C--C
Confidence            4567888889999999999887766332122211        0111111111       11222333334433   3  5


Q ss_pred             ccEEEEEe--CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec---CCCCEEEEEECCCeEEEEECCCCeEEEeec
Q 009380          248 VRMVVAGS--KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ---YCLSKIFTSCYDGLIRLMDAEKEVFDLVYS  322 (536)
Q Consensus       248 ~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~  322 (536)
                      ++++.+++  .|+.|++|++...   +..+..+..|...+..++|++   ++ .+|++++.|++|+|||+.++++...+.
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~d---G~~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAED---GGGKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECTT---SCEEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CcEEEecccCCCCcEEEEEECCC---CceeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEEEEEc
Confidence            66666643  5999999999643   567778889999999999998   56 899999999999999999998766553


Q ss_pred             -CC---CceeEEEecCCCCCEE------------EEEECCCeEEEEECCCCccceeE-----eccCCCeEEEEEecCCCC
Q 009380          323 -SE---YAVFSLSQQPNNVNTL------------YFGEGQGGLNIWDVRSRKSATEW-----LLHEARINTIDFNPRNPN  381 (536)
Q Consensus       323 -~~---~~i~~l~~~~~~~~~l------------~~g~~dg~i~i~d~~~~~~~~~~-----~~h~~~i~~i~~~p~~~~  381 (536)
                       |.   ..+.+++|+|++ .++            ++|+.|++|++||..+++.+..+     .+|...+.+.+++  + .
T Consensus       221 g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g-~  296 (356)
T 2w18_A          221 IDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--D-H  296 (356)
T ss_dssp             CCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--T-T
T ss_pred             CCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--C-C
Confidence             32   367788999988 554            56888999999999999887665     3666665555554  4 6


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCcee-EEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVH-SAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~-~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                      ++++++.|++|+|||+.+++    ....+.+|...+. +++|+|+|++|++|+.|++|+|||+
T Consensus       297 ~lASgS~DgTIkIWDl~tGk----~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          297 CAAAILTSGTIAIWDLLLGQ----CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEEETTSCEEEEETTTCS----EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEEcCCCcEEEEECCCCc----EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            89999999999999999864    3444456877655 6899999999999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2e-25  Score=234.18  Aligned_cols=315  Identities=9%  Similarity=0.033  Sum_probs=229.9

Q ss_pred             ecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC--C
Q 009380          190 KDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL--D  266 (536)
Q Consensus       190 ~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~--~  266 (536)
                      .+++++.+++          ..+.++.|.+||...... ..+..+ ..+.+++|+|  ++++|++++.|+.|.+||+  .
T Consensus       144 ~~~p~~~~~v----------s~~~d~~V~v~D~~t~~~~~~i~~g-~~~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~  210 (543)
T 1nir_A          144 DLDLPNLFSV----------TLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSA--SGRYLLVIGRDARIDMIDLWAK  210 (543)
T ss_dssp             CCCGGGEEEE----------EEGGGTEEEEEETTTCCEEEEEECS-TTEEEEEECT--TSCEEEEEETTSEEEEEETTSS
T ss_pred             ccCCCCEEEE----------EEcCCCeEEEEECCCceEEEEEecC-cccceEEECC--CCCEEEEECCCCeEEEEECcCC
Confidence            3677777666          346788999999754432 222222 2389999999  9999999999999999999  5


Q ss_pred             CCCCCCCceEEeccCCCCEEEEEEec----CCCCEEEEEEC-CCeEEEEECCCCeEEEeecC------------CCceeE
Q 009380          267 SQQDEDNGIYLFRTHLGPISGIVTQQ----YCLSKIFTSCY-DGLIRLMDAEKEVFDLVYSS------------EYAVFS  329 (536)
Q Consensus       267 ~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~------------~~~i~~  329 (536)
                      +    ...+..+. +...+..++|+|    ++ ++|+++++ +++|.+||..++++......            ...+.+
T Consensus       211 t----~~~~~~i~-~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~  284 (543)
T 1nir_A          211 E----PTKVAEIK-IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  284 (543)
T ss_dssp             S----CEEEEEEE-CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             C----CcEEEEEe-cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEE
Confidence            4    56666666 455689999999    98 88888885 89999999998876554432            236889


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      +.++|++..++++...++.|.+||+.+.+.+.  .+ .+...+.++.|+|++..+++++..+++|.+||+.+++    ..
T Consensus       285 i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~----l~  359 (543)
T 1nir_A          285 IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR----LS  359 (543)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE----EE
T ss_pred             EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe----EE
Confidence            99999886777778889999999999876654  33 3667788999999985455566678999999999864    22


Q ss_pred             ceee----cccCceeEEEEccC-CCeEEEEe-CCCcEEEEeCCC-------CCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380          408 MKVL----SHKRAVHSAYFSPS-GSSLATTS-FDDTIGIWSGVN-------FENTSMIHHNNQTGRWISSFRAIWGWDDS  474 (536)
Q Consensus       408 ~~~~----~~~~~v~~l~~sp~-g~~l~t~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  474 (536)
                      ..+.    .|.+....+ ++|+ +..++++. .|++|.+||+.+       ++.+.++......     .+.+.++|+++
T Consensus       360 ~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-----~~~v~~~pdg~  433 (543)
T 1nir_A          360 ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSS  433 (543)
T ss_dssp             EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCC
T ss_pred             EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-----ceEEEcCCCCC
Confidence            2222    254444333 5776 66666665 589999999988       6766766532211     12266899999


Q ss_pred             EEEEEc-------CCCcEEEEcCCccccc-eecc-------CCceeeeeeeEeecCCCCCEEEEEc-----cCCeEEEEe
Q 009380          475 CVFIGN-------MTRTVEVISPAQRRSV-ATLQ-------SPYISAIPCRFHAHPHQVGTLAGAT-----GGGQVYVWT  534 (536)
Q Consensus       475 ~l~~gs-------~dg~I~v~d~~~~~~~-~~l~-------~~~~~~~~~~~~~~p~~~~~lasgs-----~Dg~v~iW~  534 (536)
                      +|++++       .++.|.|||+.+++.. ..+.       ..+. .....+.|+| +|..|+.+.     .|+.|.|||
T Consensus       434 ~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          434 HLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA-KRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             EEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC-CEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEE
T ss_pred             cEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCC-CceEeccCCC-CCCEEEEEeecCCCCCCeEEEEE
Confidence            999987       2679999999999877 3331       1122 2235788999 568777652     479999999


Q ss_pred             cC
Q 009380          535 SD  536 (536)
Q Consensus       535 ~d  536 (536)
                      .+
T Consensus       512 ~~  513 (543)
T 1nir_A          512 DK  513 (543)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.3e-25  Score=228.25  Aligned_cols=278  Identities=11%  Similarity=0.011  Sum_probs=210.3

Q ss_pred             eEEeccc--ccCcc---ccccccCCceEEEEEEecC------------CccEEEEEeCC------CcEEEEECCCCCCCC
Q 009380          216 CVDIGSL--TLKPE---NIARIMPGRITQMKFLPCS------------DVRMVVAGSKL------GNITFWNLDSQQDED  272 (536)
Q Consensus       216 ~v~lw~~--~~~~~---~~~~~~~~~I~~v~~~p~~------------~~~~l~tg~~d------g~v~iwd~~~~~~~~  272 (536)
                      .++|||+  .....   ....+|...+..+++++..            .+..|+.++.+      +.|++||+..     
T Consensus        94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-----  168 (415)
T 2hqs_A           94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-----  168 (415)
T ss_dssp             EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----
T ss_pred             EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----
Confidence            8999998  54432   2246677777777776410            15566666554      7999999973     


Q ss_pred             CceEEeccCCCCEEEEEEecCCCCEEEEEECCC---eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEE-EEECCCe
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG---LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLY-FGEGQGG  348 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg---~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~-~g~~dg~  348 (536)
                      .....+..|...|.+++|+|++ ++|++++.++   .|++||+.+++...+..+...+.+++|+|++ +.|+ +++.++.
T Consensus       169 ~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg-~~la~~~~~~g~  246 (415)
T 2hqs_A          169 YNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG-SKLAFALSKTGS  246 (415)
T ss_dssp             CSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS-SEEEEEECTTSS
T ss_pred             CCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCC-CEEEEEEecCCC
Confidence            4567778899999999999999 9999999885   9999999999888888888899999999999 5555 6666554


Q ss_pred             --EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC-CC--cEEEEeCCCCCCCCCCcceeecccCceeEEEEc
Q 009380          349 --LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST-DG--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFS  423 (536)
Q Consensus       349 --i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~-dg--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~s  423 (536)
                        |++||+.+++. ..+..|...+.+++|+|++ ..|++++. ++  .|++||+.+++     ...+..+...+.+++|+
T Consensus       247 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~s  319 (415)
T 2hqs_A          247 LNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVS  319 (415)
T ss_dssp             CEEEEEETTTCCE-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC-----CEECCCSSSEEEEEEEC
T ss_pred             ceEEEEECCCCCE-EeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCC-----EEEEecCCCcccCeEEC
Confidence              99999998765 5666788899999999988 56666664 45  67777888753     33344567789999999


Q ss_pred             cCCCeEEEEeCC---CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC---cEEEEcCCccccce
Q 009380          424 PSGSSLATTSFD---DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR---TVEVISPAQRRSVA  497 (536)
Q Consensus       424 p~g~~l~t~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg---~I~v~d~~~~~~~~  497 (536)
                      |+|++|++++.+   ..|.+||+.+++... +...   .   ....+.|+|+|++|++++.++   .|++||+.++ ...
T Consensus       320 pdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~---~---~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~  391 (415)
T 2hqs_A          320 SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST---F---LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKA  391 (415)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS---S---SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEE
T ss_pred             CCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCC---C---CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-cEE
Confidence            999999988864   579999998876532 2111   1   233478999999999888776   7999998754 566


Q ss_pred             eccCCceeeeeeeEeecCCC
Q 009380          498 TLQSPYISAIPCRFHAHPHQ  517 (536)
Q Consensus       498 ~l~~~~~~~~~~~~~~~p~~  517 (536)
                      .+..+...+  ...+|+|..
T Consensus       392 ~l~~~~~~v--~~~~~~~~~  409 (415)
T 2hqs_A          392 RLPATDGQV--KFPAWSPYL  409 (415)
T ss_dssp             ECCCSSSEE--EEEEECCCC
T ss_pred             EeeCCCCCC--cCCcccccc
Confidence            777655444  367888843

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=7.1e-25  Score=229.96  Aligned_cols=277  Identities=12%  Similarity=0.091  Sum_probs=220.4

Q ss_pred             EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC--CCCeEE
Q 009380          241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA--EKEVFD  318 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~--~~~~~~  318 (536)
                      +|+|  ++.++++++.+++|.+||..+    +..+..+..+.. +.+++|+|++ ++|++++.|++|.+||+  .++...
T Consensus       144 ~~~p--~~~~~vs~~~d~~V~v~D~~t----~~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDL--PNLFSVTLRDAGQIALVDGDS----KKIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCG--GGEEEEEEGGGTEEEEEETTT----CCEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ccCC--CCEEEEEEcCCCeEEEEECCC----ceEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEE
Confidence            3788  889999999999999999987    677778774333 8999999999 99999999999999999  787777


Q ss_pred             EeecCCCceeEEEecC----CCCCEEEEEE-CCCeEEEEECCCCccceeEec----------cC-CCeEEEEEecCCCCE
Q 009380          319 LVYSSEYAVFSLSQQP----NNVNTLYFGE-GQGGLNIWDVRSRKSATEWLL----------HE-ARINTIDFNPRNPNI  382 (536)
Q Consensus       319 ~~~~~~~~i~~l~~~~----~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~----------h~-~~i~~i~~~p~~~~~  382 (536)
                      ....+...+..++|+|    ++ +++++++ .+++|.+||..+++++..+..          |. ..+.++.++|+++.+
T Consensus       216 ~~i~~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          216 AEIKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             EEEECCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred             EEEecCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence            6666777889999999    88 7888777 589999999999998887764          22 378999999988888


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccC--CCC
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNN--QTG  459 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~--~~~  459 (536)
                      +++...++.|.+||+.+.+.   .......+...+.++.|+|+|++|++++ .+++|.+||+.+++....+....  ..+
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~---l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g  371 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDN---LTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  371 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSS---CEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCT
T ss_pred             EEEECCCCeEEEEEecCCCc---ceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCC
Confidence            89999999999999987531   1122445677889999999999877655 58899999999998877775321  111


Q ss_pred             ceeeeeEEEEcCC-CCEEEEEc-CCCcEEEEcCCc-------cccceeccCCceeeeeeeEeecCCCCCEEEEEc-----
Q 009380          460 RWISSFRAIWGWD-DSCVFIGN-MTRTVEVISPAQ-------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-----  525 (536)
Q Consensus       460 ~~~~~~~~~~s~~-g~~l~~gs-~dg~I~v~d~~~-------~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-----  525 (536)
                      ....   + ++|+ +.+++++. .|+.|.|||..+       ++++.++..+....  ..+.+|| ++.+|++++     
T Consensus       372 ~g~~---~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~--~~v~~~p-dg~~l~v~~~~~~~  444 (543)
T 1nir_A          372 RGAN---F-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS--LFIKTHP-KSSHLYVDTTFNPD  444 (543)
T ss_dssp             TCEE---E-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC--CCEECCT-TCCEEEECCTTCSS
T ss_pred             CCcc---c-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCc--eEEEcCC-CCCcEEEecCCCCC
Confidence            1111   1 4676 55666665 579999999988       78889988765443  3578899 679999987     


Q ss_pred             --cCCeEEEEecC
Q 009380          526 --GGGQVYVWTSD  536 (536)
Q Consensus       526 --~Dg~v~iW~~d  536 (536)
                        .++.|.|||++
T Consensus       445 ~~~~~~v~v~d~~  457 (543)
T 1nir_A          445 ARISQSVAVFDLK  457 (543)
T ss_dssp             HHHHTCEEEEETT
T ss_pred             cccCceEEEEECC
Confidence              37899999975

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=5e-25  Score=223.97  Aligned_cols=277  Identities=13%  Similarity=0.056  Sum_probs=210.8

Q ss_pred             CceEEEEEEecCCc-cEEEEEe----CCC----cEEEEEC--CCCCCCCCce--EEeccCCCCEEEEEEecC--------
Q 009380          235 GRITQMKFLPCSDV-RMVVAGS----KLG----NITFWNL--DSQQDEDNGI--YLFRTHLGPISGIVTQQY--------  293 (536)
Q Consensus       235 ~~I~~v~~~p~~~~-~~l~tg~----~dg----~v~iwd~--~~~~~~~~~~--~~~~~h~~~V~~l~~~~~--------  293 (536)
                      ..+....|.+  .+ .++++|+    .+|    .|+|||+  .+    +..+  ..+.+|...+..+++++.        
T Consensus        63 ~~~~~~~w~~--~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  136 (415)
T 2hqs_A           63 QEVQPAAWSA--LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP----GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLT  136 (415)
T ss_dssp             GGCCHHHHHT--TTCCEEEEEEEEECTTSCEEEEEEEEECSSST----TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHh--cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC----CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHc
Confidence            4566777777  44 5666776    467    8999999  76    4555  458888888888877752        


Q ss_pred             ------CCCEEEEEECC------CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC---eEEEEECCCCc
Q 009380          294 ------CLSKIFTSCYD------GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRSRK  358 (536)
Q Consensus       294 ------~~~~l~s~s~d------g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~~  358 (536)
                            + ..++.++.+      +.|++||+..+....+..|...+.+++|+|++ +.|++++.++   .|++||+.+++
T Consensus       137 g~~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~tg~  214 (415)
T 2hqs_A          137 GIKGAFR-TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGA  214 (415)
T ss_dssp             SSCCCTT-CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCC
T ss_pred             CCCCcCC-CEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCc
Confidence                  4 566666654      79999999987777778889999999999998 7888888775   99999999887


Q ss_pred             cceeEeccCCCeEEEEEecCCCCEEEEEeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC-C
Q 009380          359 SATEWLLHEARINTIDFNPRNPNIMATSSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF-D  435 (536)
Q Consensus       359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~-d  435 (536)
                      .. .+..|...+.+++|+|++..++++++.++.  |++||+.++     ....+..|...+.+++|+|+|++|++++. +
T Consensus       215 ~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-----~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~  288 (415)
T 2hqs_A          215 VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA  288 (415)
T ss_dssp             EE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----CEEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred             EE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-----CEEeCcCCCCcccceEECCCCCEEEEEECCC
Confidence            64 566788899999999998544447776665  999999875     33455678889999999999999998886 4


Q ss_pred             C--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCccccceeccCCceeeeeee
Q 009380          436 D--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       436 g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      +  .|.+||+.+++......    .+..+  ..+.|+|+|++|++++.+   ..|.+||+.+++. ..+..+.   ....
T Consensus       289 g~~~i~~~d~~~~~~~~l~~----~~~~~--~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---~~~~  358 (415)
T 2hqs_A          289 GRPQVYKVNINGGAPQRITW----EGSQN--QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF---LDET  358 (415)
T ss_dssp             SSCEEEEEETTSSCCEECCC----SSSEE--EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS---SCEE
T ss_pred             CCcEEEEEECCCCCEEEEec----CCCcc--cCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC---CcCC
Confidence            4  68888988765332211    12223  347899999999888764   5899999998865 3454433   2346


Q ss_pred             EeecCCCCCEEEEEccCC---eEEEEecC
Q 009380          511 FHAHPHQVGTLAGATGGG---QVYVWTSD  536 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg---~v~iW~~d  536 (536)
                      ++|+| ++.+|++++.++   .|++||++
T Consensus       359 ~~~sp-dg~~l~~~s~~~~~~~l~~~d~~  386 (415)
T 2hqs_A          359 PSLAP-NGTMVIYSSSQGMGSVLNLVSTD  386 (415)
T ss_dssp             EEECT-TSSEEEEEEEETTEEEEEEEETT
T ss_pred             eEEcC-CCCEEEEEEcCCCccEEEEEECC
Confidence            88999 678898888777   79999874

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=5.3e-23  Score=202.09  Aligned_cols=280  Identities=13%  Similarity=0.112  Sum_probs=196.3

Q ss_pred             EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-CCeEEEEECCCCeE-E
Q 009380          241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-DGLIRLMDAEKEVF-D  318 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~~~~-~  318 (536)
                      .|.+. .+..+++++.++.|.+||+.+    +.....+..+...+ +++|+|++ +++++++. ++.|.+||+.++.. .
T Consensus         4 ~~~~~-~~~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~-~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~   76 (331)
T 3u4y_A            4 MFQTT-SNFGIVVEQHLRRISFFSTDT----LEILNQITLGYDFV-DTAITSDC-SNVVVTSDFCQTLVQIETQLEPPKV   76 (331)
T ss_dssp             ---CC-CCEEEEEEGGGTEEEEEETTT----CCEEEEEECCCCEE-EEEECSSS-CEEEEEESTTCEEEEEECSSSSCEE
T ss_pred             eEcCC-CCEEEEEecCCCeEEEEeCcc----cceeeeEEccCCcc-eEEEcCCC-CEEEEEeCCCCeEEEEECCCCceeE
Confidence            34441 445577888899999999987    56666666666677 99999999 76666665 89999999998875 4


Q ss_pred             EeecC-CCceeEEEecCCCCCEEEEEECCC---eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc-EE
Q 009380          319 LVYSS-EYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT-AC  393 (536)
Q Consensus       319 ~~~~~-~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~-i~  393 (536)
                      ..... ..+..+++|+|++ ++++++..++   .|.+||+.+++.+..+.. .....+++|+|++..+++++..++. |.
T Consensus        77 ~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~  154 (331)
T 3u4y_A           77 VAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVR  154 (331)
T ss_dssp             EEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEE
T ss_pred             EecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEE
Confidence            44444 4444449999998 7777555553   899999999988777764 4567999999998667777777788 99


Q ss_pred             EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCc---ceEEeccCCCCceeeeeEEEE
Q 009380          394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFEN---TSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      +|++...................+..++|+|+|+++++++ .++.|.+||+.+++.   +..+....    .  ...++|
T Consensus       155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~  228 (331)
T 3u4y_A          155 RFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN----L--PGTIVV  228 (331)
T ss_dssp             EEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS----C--CCCEEE
T ss_pred             EEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC----C--CceEEE
Confidence            9999853210000012224456689999999999665554 688999999998887   55554321    1  123779


Q ss_pred             cCCCCEEEEEc-CCCcEEEEcCCcccc--ceeccCC----cee-eeeeeEeecCCCCCEEE-EEccCCeEEEEecC
Q 009380          470 GWDDSCVFIGN-MTRTVEVISPAQRRS--VATLQSP----YIS-AIPCRFHAHPHQVGTLA-GATGGGQVYVWTSD  536 (536)
Q Consensus       470 s~~g~~l~~gs-~dg~I~v~d~~~~~~--~~~l~~~----~~~-~~~~~~~~~p~~~~~la-sgs~Dg~v~iW~~d  536 (536)
                      +|+|++|++++ .++.|.+||..+++.  +..+...    ... .....++|+| ++.+|+ ++..++.|.|||++
T Consensus       229 spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          229 SRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             CTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             CCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEEec
Confidence            99999877665 467899999998866  3333221    100 0012468898 557664 55667799999974

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.2e-23  Score=230.00  Aligned_cols=318  Identities=8%  Similarity=-0.003  Sum_probs=221.2

Q ss_pred             cceeeeecCCCCcccccccccccccccccc-cc-----eEEecccccCcc-ccccccC----------------------
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEV-GS-----CVDIGSLTLKPE-NIARIMP----------------------  234 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~-dg-----~v~lw~~~~~~~-~~~~~~~----------------------  234 (536)
                      ..+..+.|+|||+.++..          +. ++     .|.+|++..... .+...+.                      
T Consensus        37 ~~~~~~~~SpdG~~la~~----------~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFL----------RGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIA  106 (741)
T ss_dssp             CCCEEEEECTTSSEEEEE----------ECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------
T ss_pred             CCCCCceEecCCCEEEEE----------eccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhc
Confidence            467899999999999865          22 44     899999754432 2222222                      


Q ss_pred             --CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          235 --GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       235 --~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                        ..|.+++|+|  ||++|++++. +.|.+||+.++.  ......+..|...+.+++|+|+| ++|++++ ++.|++||+
T Consensus       107 ~~~~v~~~~~Sp--Dg~~l~~~~~-~~i~~~d~~~~~--~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~  179 (741)
T 2ecf_A          107 AMTGIVDYQWSP--DAQRLLFPLG-GELYLYDLKQEG--KAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDL  179 (741)
T ss_dssp             CCEESCCCEECT--TSSEEEEEET-TEEEEEESSSCS--TTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEET
T ss_pred             cccCcceeEECC--CCCEEEEEeC-CcEEEEECCCCC--cceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEec
Confidence              2389999999  9999999886 999999998631  00445567788899999999999 8888887 569999999


Q ss_pred             CCCeEEEeecCCCc-----------------eeEEEecCCCCCEEEEEECCC----------------------------
Q 009380          313 EKEVFDLVYSSEYA-----------------VFSLSQQPNNVNTLYFGEGQG----------------------------  347 (536)
Q Consensus       313 ~~~~~~~~~~~~~~-----------------i~~l~~~~~~~~~l~~g~~dg----------------------------  347 (536)
                      .++....+......                 +.+++|+|++ +.|++++.|+                            
T Consensus       180 ~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~  258 (741)
T 2ecf_A          180 ASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD  258 (741)
T ss_dssp             TTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred             CCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence            99877655443222                 4789999999 6777776554                            


Q ss_pred             -----eEEEEECCC-CccceeEe--ccCCCeEEEEEecCCCCEEEEEeC-----CCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          348 -----GLNIWDVRS-RKSATEWL--LHEARINTIDFNPRNPNIMATSST-----DGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       348 -----~i~i~d~~~-~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~-----dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                           .|.+||+.+ ++......  .|...+.+++| |+| ++|++++.     +..|++||+.+++    .......+.
T Consensus       259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~  332 (741)
T 2ecf_A          259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQ----QRVLAHETS  332 (741)
T ss_dssp             CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCC----EEEEEEEEC
T ss_pred             CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCc----eEEEEEcCC
Confidence                 889999988 77544332  47788999999 988 56665543     5679999998863    222222232


Q ss_pred             C----ceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEE-EEcCCCCEEE-EEcCCC--cE
Q 009380          415 R----AVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRA-IWGWDDSCVF-IGNMTR--TV  485 (536)
Q Consensus       415 ~----~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~s~~g~~l~-~gs~dg--~I  485 (536)
                      .    .+.+++|+|+|+++++++.||.++||.+. ++. ...+...   ...+.  .+ .|+|+|+.|+ +++.++  .+
T Consensus       333 ~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~---~~~v~--~~~~~s~dg~~l~~~~~~~~~~~~  406 (741)
T 2ecf_A          333 PTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG---NWSVD--ELLAVDEKAGLAYFRAGIESARES  406 (741)
T ss_dssp             SSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS---SSCEE--EEEEEETTTTEEEEEECSSCTTCB
T ss_pred             CCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec---ceEEE--eEeEEeCCCCEEEEEEeCCCCceE
Confidence            2    45689999999999999999988888765 233 3333211   11122  23 5999998765 455555  89


Q ss_pred             EEEcCCc-cccceeccCCceeeeeeeEeecCCCCCEEEEEccC----CeEEEEec
Q 009380          486 EVISPAQ-RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG----GQVYVWTS  535 (536)
Q Consensus       486 ~v~d~~~-~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D----g~v~iW~~  535 (536)
                      +||++.. +..+..+.. ... + ..++|+| ++.+|+....+    +.+++|+.
T Consensus       407 ~l~~~~~~g~~~~~l~~-~~~-~-~~~~~sp-dg~~l~~~~~~~~~p~~~~l~~~  457 (741)
T 2ecf_A          407 QIYAVPLQGGQPQRLSK-APG-M-HSASFAR-NASVYVDSWSNNSTPPQIELFRA  457 (741)
T ss_dssp             EEEEEETTCCCCEECCC-SCS-E-EEEEECT-TSSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEEEEcCCCCeeeccc-CCC-c-eEEEECC-CCCEEEEEecCCCCCCeEEEEEc
Confidence            9998864 444556654 222 2 3678898 56777765433    46788764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=2e-23  Score=228.29  Aligned_cols=282  Identities=12%  Similarity=0.052  Sum_probs=206.8

Q ss_pred             CCceEEEEEEecCCccEEEEEeC-CC-----cEEEEECCCCCCCCCceEEeccCCC------------------------
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSK-LG-----NITFWNLDSQQDEDNGIYLFRTHLG------------------------  283 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~-dg-----~v~iwd~~~~~~~~~~~~~~~~h~~------------------------  283 (536)
                      ...|.+++|+|  ||++|++++. ||     .|++||+.+    +.....+..|..                        
T Consensus        36 ~~~~~~~~~Sp--dG~~la~~~~~d~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (741)
T 2ecf_A           36 GPTLMKPKVAP--DGSRVTFLRGKDSDRNQLDLWSYDIGS----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMT  109 (741)
T ss_dssp             CCCCEEEEECT--TSSEEEEEECCSSCTTEEEEEEEETTT----CCEEEEECGGGTC--------------------CCE
T ss_pred             CCCCCCceEec--CCCEEEEEeccCCCCcccEEEEEECCC----CceeEccchhhcccccccccchhhhhhhhhhhcccc
Confidence            56799999999  9999999998 88     899999987    444444444332                        


Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCC---eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE---VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA  360 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~---~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~  360 (536)
                      .|.+++|+|++ ++|++++. +.|++||+.++   ....+..+...+.+++|+|++ +.|++++. +.|++||+.+++..
T Consensus       110 ~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~~-~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          110 GIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIRG-RNLWVIDLASGRQM  185 (741)
T ss_dssp             ESCCCEECTTS-SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEET-TEEEEEETTTTEEE
T ss_pred             CcceeEECCCC-CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEeC-CcEEEEecCCCCEE
Confidence            37899999999 89998886 99999999988   777777778889999999999 78888774 59999999987765


Q ss_pred             eeEeccCCC----------------eEEEEEecCCCCEEEEEeCCC---------------------------------c
Q 009380          361 TEWLLHEAR----------------INTIDFNPRNPNIMATSSTDG---------------------------------T  391 (536)
Q Consensus       361 ~~~~~h~~~----------------i~~i~~~p~~~~~l~s~s~dg---------------------------------~  391 (536)
                      .....+...                +.++.|+|+| ++|++++.|+                                 .
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            444333332                4789999998 5666766554                                 7


Q ss_pred             EEEEeCCC-CCCCCCCcceee-cccCceeEEEEccCCCeEEEEeC-----CCcEEEEeCCCCCcceEEeccCCCCcee-e
Q 009380          392 ACIWDLRS-MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSF-----DDTIGIWSGVNFENTSMIHHNNQTGRWI-S  463 (536)
Q Consensus       392 i~iwdl~~-~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~  463 (536)
                      |++||+.+ ++.   ..+... .|...+.+++| |||++|++++.     +..|.+||+.+++....+.....  .++ .
T Consensus       265 l~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~~  338 (741)
T 2ecf_A          265 LGVISPAEQAQT---QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSP--TWVPL  338 (741)
T ss_dssp             EEEECSSTTCCC---EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECS--SCCCC
T ss_pred             EEEEECCCCCce---EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCC--CcCCc
Confidence            88999887 541   111111 47788999999 99999987764     56799999998877666543221  111 1


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCEE-EEEccCC--eEEEEec
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGG--QVYVWTS  535 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l-asgs~Dg--~v~iW~~  535 (536)
                      ...+.|+|||+++++++.++.++||.+. .+. ...+..+..... ..+.|+| +++.| ++++.++  .++||++
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~-~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~  411 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVD-ELLAVDE-KAGLAYFRAGIESARESQIYAV  411 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEE-EEEEEET-TTTEEEEEECSSCTTCBEEEEE
T ss_pred             CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEE-eEeEEeC-CCCEEEEEEeCCCCceEEEEEE
Confidence            1236799999999999999987777664 333 566665443332 2235888 45655 4566666  8999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=4.3e-22  Score=195.61  Aligned_cols=275  Identities=10%  Similarity=0.047  Sum_probs=195.6

Q ss_pred             cccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCc-eEEeccCCCCEE
Q 009380          210 KIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNG-IYLFRTHLGPIS  286 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~-~~~~~~h~~~V~  286 (536)
                      +...++.|.+||...... .....+...+ +++|+|  ++++|++++. ++.|.+||+.+    ... ...+..+..++.
T Consensus        15 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~----~~~~~~~~~~~~~~~~   87 (331)
T 3u4y_A           15 VEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQL----EPPKVVAIQEGQSSMA   87 (331)
T ss_dssp             EEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSS----SSCEEEEEEECSSCCC
T ss_pred             EecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCC----CceeEEecccCCCCcc
Confidence            456678999999754433 2233445556 999999  9986666555 88999999987    454 666777777766


Q ss_pred             EEEEecCCCCEEEEEECCC---eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe-EEEEECCCCccce-
Q 009380          287 GIVTQQYCLSKIFTSCYDG---LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG-LNIWDVRSRKSAT-  361 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg---~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~-i~i~d~~~~~~~~-  361 (536)
                      +++|+|++ ++|+++..++   .|.+||+.++...........+.+++|+|++..++++...++. |.+|++.....+. 
T Consensus        88 ~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~  166 (331)
T 3u4y_A           88 DVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD  166 (331)
T ss_dssp             CEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             ceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence            69999999 8888555443   8999999999887777777778999999999545566666678 9999998654431 


Q ss_pred             ---eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCc
Q 009380          362 ---EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDT  437 (536)
Q Consensus       362 ---~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~  437 (536)
                         ........+.+++|+|++..+++++..++.|.+||+.+++.  ............+..++|+|+|++|++++ .++.
T Consensus       167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  244 (331)
T 3u4y_A          167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN--ITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD  244 (331)
T ss_dssp             EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS--CEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE
T ss_pred             cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc--cceeeeccCCCCCceEEECCCCCEEEEEEcCCCE
Confidence               22234566899999999854666666789999999987541  01133444567788999999999776655 5778


Q ss_pred             EEEEeCCCCCc--ceEEeccC-CCCcee-eeeEEEEcCCCCEEEEEcC-CCcEEEEcCCccc
Q 009380          438 IGIWSGVNFEN--TSMIHHNN-QTGRWI-SSFRAIWGWDDSCVFIGNM-TRTVEVISPAQRR  494 (536)
Q Consensus       438 I~iwd~~~~~~--~~~~~~~~-~~~~~~-~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~~~  494 (536)
                      |.+||+.+++.  +..+.... ...... ....++|+|+|++|++++. ++.|.+||+.+..
T Consensus       245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            99999988765  33222210 001111 1122579999998866554 5799999998764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.2e-22  Score=199.99  Aligned_cols=269  Identities=13%  Similarity=0.134  Sum_probs=185.0

Q ss_pred             cccceEEecccccCc--cc-cccccCCceEEEEEEecCCccEEEEEeCC-CcEEEEECCCCCCCCCceEEeccCCCCEEE
Q 009380          212 EVGSCVDIGSLTLKP--EN-IARIMPGRITQMKFLPCSDVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~--~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      ..++.|.+|++....  .. ....+...+.+++|+|  ++++|++++.+ +.|.+|++.........+..+..+. .+.+
T Consensus        12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~   88 (343)
T 1ri6_A           12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTH   88 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSE
T ss_pred             CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC--CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcE
Confidence            567899999984221  11 1234677899999999  99988888876 9999999983211122344454444 7889


Q ss_pred             EEEecCCCCEEEEEEC-CCeEEEEECC---CCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCC-Cccce
Q 009380          288 IVTQQYCLSKIFTSCY-DGLIRLMDAE---KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRS-RKSAT  361 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~-dg~I~vwd~~---~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~~~~  361 (536)
                      ++|+|++ ++|++++. ++.|.+||+.   .............+.+++|+|++ +.+++++ .++.|.+||+.+ ++...
T Consensus        89 ~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A           89 ISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             EEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             EEEcCCC-CEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceee
Confidence            9999999 77766665 8899999994   33444455556679999999998 6777776 889999999987 54432


Q ss_pred             ----eEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----c--ccCceeEEEEccCCCeEE
Q 009380          362 ----EWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----S--HKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       362 ----~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~--~~~~v~~l~~sp~g~~l~  430 (536)
                          .+.. ....+.+++|+|++..+++++..++.|.+||+..............    .  ....+..++|+|+|++|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence                2232 3457889999998854556666889999999964211110011111    1  123566899999998877


Q ss_pred             EEe-CCCcEEEEeCCC--C--CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCC
Q 009380          431 TTS-FDDTIGIWSGVN--F--ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPA  491 (536)
Q Consensus       431 t~s-~dg~I~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~  491 (536)
                      ++. .++.|.+||+..  +  +....+...   ..   ...++|+|+|++|++++ .++.|.+|++.
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~---~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQ---PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECS---SS---CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecCC---Cc---cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            554 789999999973  2  222222211   11   22377999999888887 57999999553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.3e-22  Score=199.89  Aligned_cols=274  Identities=9%  Similarity=0.096  Sum_probs=184.5

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-CeEEEEECC--CCeEE--EeecCC
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-GLIRLMDAE--KEVFD--LVYSSE  324 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-g~I~vwd~~--~~~~~--~~~~~~  324 (536)
                      ++++++.++.|.+|++....  .........|...+.+++|+|++ ++|++++.+ +.|.+|++.  ++...  ......
T Consensus         7 l~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   83 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEG--ALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP   83 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEeCCCCCeEEEEEECCCC--cEEEeeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence            44455789999999996411  11222334577789999999999 888888876 999999998  55433  223334


Q ss_pred             CceeEEEecCCCCCEEEEEE-CCCeEEEEECC---CCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVR---SRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRS  399 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~---~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~  399 (536)
                      ..+.+++|+|++ +.|++++ .++.|.+||+.   ..+.+..+. ....+.+++|+|++. ++++++ .++.|.+||+.+
T Consensus        84 ~~~~~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           84 GSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECT
T ss_pred             CCCcEEEEcCCC-CEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecC
Confidence            588999999998 6666655 48899999994   333444444 345688999999884 555555 899999999986


Q ss_pred             -CCCCCCCcc--eee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCC--CCcc--eEEeccC-CCCceeeeeEEEE
Q 009380          400 -MATDKPEPM--KVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN--FENT--SMIHHNN-QTGRWISSFRAIW  469 (536)
Q Consensus       400 -~~~~~~~~~--~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~--~~~~--~~~~~~~-~~~~~~~~~~~~~  469 (536)
                       ++.  ....  ... .....+.+++|+|+|+++++++ .++.|.+||+..  +...  ..+.... ..........++|
T Consensus       161 ~~~~--~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          161 DGHL--VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             TSCE--EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             CCce--eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEE
Confidence             320  0000  122 2345788999999999776555 789999999954  3221  1121111 1011112234789


Q ss_pred             cCCCCEEEE-EcCCCcEEEEcCC--c--cccceeccCCceeeeeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380          470 GWDDSCVFI-GNMTRTVEVISPA--Q--RRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTS  535 (536)
Q Consensus       470 s~~g~~l~~-gs~dg~I~v~d~~--~--~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~  535 (536)
                      +|+|++|++ +..++.|.+|++.  +  .+.+..+..+..   +..++|+| ++.+|++++ .++.|.+|++
T Consensus       239 s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          239 TPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS---CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred             CCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc---cceEEECC-CCCEEEEecCCCCeEEEEEE
Confidence            999998774 4578999999998  2  334444443322   35688998 567777776 6899999965

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=2.8e-23  Score=235.50  Aligned_cols=330  Identities=10%  Similarity=0.017  Sum_probs=236.9

Q ss_pred             eecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCce-------EEEEEEecCCccE
Q 009380          178 VIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRI-------TQMKFLPCSDVRM  250 (536)
Q Consensus       178 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I-------~~v~~~p~~~~~~  250 (536)
                      .+.+|...+.++.|||||+.++.......    ...+..|.+|++.......+..|...+       .+++|+|  ||++
T Consensus        47 ~lt~~~~~v~~~~~SPDG~~la~~s~~~~----~~~~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~l  120 (1045)
T 1k32_A           47 KIVSNLGVINNARFFPDGRKIAIRVMRGS----SLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP--DGNL  120 (1045)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEEST----TCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT--TCCE
T ss_pred             EeeeCCCcccCeEECCCCCEEEEEEeecc----CCCCCeEEEEECCCCCeEEcccCCCcccccccccccccCCC--CCEE
Confidence            46778999999999999999996521100    012347889998665555567788888       9999999  8887


Q ss_pred             EEEEeCC------CcEEEEECCCCCCC----C-----------------------------------------CceEEec
Q 009380          251 VVAGSKL------GNITFWNLDSQQDE----D-----------------------------------------NGIYLFR  279 (536)
Q Consensus       251 l~tg~~d------g~v~iwd~~~~~~~----~-----------------------------------------~~~~~~~  279 (536)
                      +++++.+      ..|.+|++..+...    .                                         .....+.
T Consensus       121 l~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~  200 (1045)
T 1k32_A          121 IISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV  200 (1045)
T ss_dssp             EEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE
T ss_pred             EEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECc
Confidence            7887754      35777776542100    0                                         0112335


Q ss_pred             cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC--CCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCC
Q 009380          280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE--KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR  357 (536)
Q Consensus       280 ~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~--~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~  357 (536)
                      +|...+.++.|+++  .++++++.|+.+.+|.+.  ++....+..+. .+...+|+|++ ..|+++ .++.|.+||+...
T Consensus       201 ~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG-~~la~~-~~~~i~~~d~~~~  275 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG-RRILFS-KGGSIYIFNPDTE  275 (1045)
T ss_dssp             CCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS-SCEEEE-ETTEEEEECTTTC
T ss_pred             CCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC-CEEEEE-eCCEEEEecCCce
Confidence            67888999999886  577788888999999764  34444444443 46778999998 666666 4889999999433


Q ss_pred             ccceeEec-----------cCCCeEEEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC-ceeEEEEcc
Q 009380          358 KSATEWLL-----------HEARINTIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR-AVHSAYFSP  424 (536)
Q Consensus       358 ~~~~~~~~-----------h~~~i~~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~-~v~~l~~sp  424 (536)
                       .+..+..           |...+.+++|+ |+| ..|++++ ++.|.+|++..+     ....+..|.. .+.+++|+ 
T Consensus       276 -~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          276 -KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGT-----YVLKVPEPLRIRYVRRGGD-  346 (1045)
T ss_dssp             -CEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSS-----BEEECSCCSCEEEEEECSS-
T ss_pred             -EeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCC-----ceEEccCCCcceEEeeeEc-
Confidence             3334433           34478999999 988 5666666 789999998864     2334456666 89999999 


Q ss_pred             CCCeEEEEeCCCcEE-EEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCc
Q 009380          425 SGSSLATTSFDDTIG-IWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY  503 (536)
Q Consensus       425 ~g~~l~t~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~  503 (536)
                      +|+.|++++.++.|. +||+.+++.....    ....  ....++|+|||++|++++.++.|++||+.+++....+..+.
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~----~~~~--~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~  420 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEKFE----ENLG--NVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE  420 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECC----CCCC--SEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceEec----CCcc--ceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC
Confidence            999999999888888 9998766533222    1111  23347899999999999999999999999987766654543


Q ss_pred             eeeeeeeEeecCCCCCEEEEEccCC----------eEEEEecC
Q 009380          504 ISAIPCRFHAHPHQVGTLAGATGGG----------QVYVWTSD  536 (536)
Q Consensus       504 ~~~~~~~~~~~p~~~~~lasgs~Dg----------~v~iW~~d  536 (536)
                      ...  ..++|+| ++.+|++++.++          .|++||++
T Consensus       421 ~~v--~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~  460 (1045)
T 1k32_A          421 AMI--TDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME  460 (1045)
T ss_dssp             SCC--CCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred             CCc--cceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence            332  3678999 679998887654          89999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=4.7e-22  Score=196.88  Aligned_cols=270  Identities=10%  Similarity=0.037  Sum_probs=204.0

Q ss_pred             cCCceEEEEEEecCCccEEEEEeC-------CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCE-EEEEECC
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSK-------LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSK-IFTSCYD  304 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~-l~s~s~d  304 (536)
                      +...+..++|+|  ++++|++++.       ++.|.+||..+    ...+..+... ..+..++|+|++ ++ +++...+
T Consensus        39 ~~~~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~~~~~-~~~~~~~~s~dg-~~l~v~~~~~  110 (353)
T 3vgz_A           39 VGKGAYEMAYSQ--QENALWLATSQSRKLDKGGVVYRLDPVT----LEVTQAIHND-LKPFGATINNTT-QTLWFGNTVN  110 (353)
T ss_dssp             EESSEEEEEEET--TTTEEEEEECCCTTTEESEEEEEECTTT----CCEEEEEEES-SCCCSEEEETTT-TEEEEEETTT
T ss_pred             hccCccceEECC--CCCEEEEEcCCCcCCCCCccEEEEcCCC----CeEEEEEecC-CCcceEEECCCC-CEEEEEecCC
Confidence            345688999999  9888887774       56899999987    5556655543 447789999999 64 4555568


Q ss_pred             CeEEEEECCCCeEEEeecCCC----------ceeEEEecCCCCCEEEEEE--CCCeEEEEECCCCccceeEeccCCCeEE
Q 009380          305 GLIRLMDAEKEVFDLVYSSEY----------AVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRSRKSATEWLLHEARINT  372 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~~~~~----------~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~h~~~i~~  372 (536)
                      +.|.+||+.+++.........          .+.+++|+|++ +.+++++  .++.|.+||+.+++.+..+..+...+.+
T Consensus       111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  189 (353)
T 3vgz_A          111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG  189 (353)
T ss_dssp             TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred             CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence            999999999987755543321          27889999998 6666665  4789999999999888887766677899


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee----cccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCCC
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL----SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFE  447 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~----~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~  447 (536)
                      ++|+|++ .++++++.++.|.+||+.+++    ......    ++...+..++|+|+|+++++++. ++.|.+||..+++
T Consensus       190 ~~~s~dg-~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          190 LALDSEG-KRLYTTNADGELITIDTADNK----ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             CEEETTT-TEEEEECTTSEEEEEETTTTE----EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred             EEECCCC-CEEEEEcCCCeEEEEECCCCe----EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            9999988 678888889999999998853    222222    24556888999999997777665 4899999999888


Q ss_pred             cceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380          448 NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG  526 (536)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~  526 (536)
                      ....+.....       ..+.|+|+|+++++++ .++.|.+||..+++.+..+..+.   .+..++|+| ++++|+.++.
T Consensus       265 ~~~~~~~~~~-------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~-dg~~l~v~~~  333 (353)
T 3vgz_A          265 ILAKVAAPES-------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSA-DGKTLYVSVK  333 (353)
T ss_dssp             EEEEEECSSC-------CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECT-TSCEEEEEEE
T ss_pred             EEEEEEcCCC-------ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcC-CCCEEEEEEc
Confidence            7777654221       2377899999766555 68999999999998888776543   235678888 5676666554


Q ss_pred             C
Q 009380          527 G  527 (536)
Q Consensus       527 D  527 (536)
                      +
T Consensus       334 ~  334 (353)
T 3vgz_A          334 Q  334 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.1e-22  Score=195.52  Aligned_cols=259  Identities=15%  Similarity=0.103  Sum_probs=187.2

Q ss_pred             cccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCC-CCCCCCceEEeccC-CCCEEE
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDS-QQDEDNGIYLFRTH-LGPISG  287 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~-~~~~~~~~~~~~~h-~~~V~~  287 (536)
                      +.+.++.|.+|++..........|.+.|.+++|+|  ++++|++++ ++.|.+||+.+ .    ........| ...|.+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~~~~-~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSP--DGKYLLLNS-EGLLYRLSLAGDP----SPEKVDTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECT--TSSEEEEEE-TTEEEEEESSSCC----SCEECCCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCCCceeeeccCCcceEeeEECC--CCCEEEEEc-CCeEEEEeCCCCC----CceEeccccccccccc
Confidence            45678899999987666555677899999999999  999999987 78999999986 3    233334444 467899


Q ss_pred             EEEecCCCCEEEEEEC--CC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-Ccccee
Q 009380          288 IVTQQYCLSKIFTSCY--DG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-RKSATE  362 (536)
Q Consensus       288 l~~~~~~~~~l~s~s~--dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-~~~~~~  362 (536)
                      ++|+|++ .+|++++.  ++  .|.+|++.++....+.. ...+..++|+|++..+++++..++.+.+|++.. ......
T Consensus        90 ~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~  167 (297)
T 2ojh_A           90 HGISPDG-ALYAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR  167 (297)
T ss_dssp             CEECTTS-SEEEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             eEECCCC-CEEEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE
Confidence            9999999 89999883  34  45555556665444433 345899999999944444788899999998643 233455


Q ss_pred             EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-------
Q 009380          363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-------  435 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-------  435 (536)
                      +..+...+.+++|+|++..+++++..++.+.+|++....   .....+..|...+.++.|+|+|++|++++.+       
T Consensus       168 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          168 LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHP  244 (297)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred             cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccc
Confidence            667888999999999885344445568999999986321   2344455677889999999999999988876       


Q ss_pred             ----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          436 ----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       436 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                          +.|.+||+.+++............ .+.  .+.|+|++++|++++.+.
T Consensus       245 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~--~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNVETLFDLFGGQG-TMN--SPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             SSEEEEEEEEETTSCSCEEEEEEEESTT-TSC--SCCBCTTSSEEEEEEECC
T ss_pred             ccCceEEEEEecCCCCceeeeccCCCCc-ccc--cceECCCCCEEEEEEecc
Confidence                569999998876544332111111 122  267999999988877653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=5.1e-23  Score=224.45  Aligned_cols=283  Identities=9%  Similarity=0.075  Sum_probs=200.5

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC---CEEEEEEecCCCCEEEEEECC-------
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG---PISGIVTQQYCLSKIFTSCYD-------  304 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~d-------  304 (536)
                      ..+.+++|+|  ||+++++ +.||+|++||+.+    +.....+..|..   .|.+++|+|+| ++|++++.+       
T Consensus        17 ~~~~~~~~sp--dg~~~~~-~~dg~i~~~d~~~----g~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           17 IHDPEAKWIS--DTEFIYR-EQKGTVRLWNVET----NTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CCCCCCCBSS--SSCBCCC-CSSSCEEEBCGGG----CCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSC
T ss_pred             ccccccEEcC--CCcEEEE-eCCCCEEEEECCC----CcEEEEeccccccccccceEEECCCC-CEEEEEecCccceeec
Confidence            3477899999  9997776 7899999999987    555666666665   49999999999 999998764       


Q ss_pred             --CeEEEEECCCCeEEEeec---CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe---------
Q 009380          305 --GLIRLMDAEKEVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI---------  370 (536)
Q Consensus       305 --g~I~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i---------  370 (536)
                        +.|.+||+.++....+..   +...+..++|+|++ +.|++++. +.|++||+.+++.......+...+         
T Consensus        89 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v  166 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL  166 (723)
T ss_dssp             CCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred             ceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECccccee
Confidence              788999999987644443   33348899999999 67777776 699999999887765555444333         


Q ss_pred             ---------EEEEEecCCCCEEEEEeCCC----------------------------------cEEEEeCCCCCCCCCCc
Q 009380          371 ---------NTIDFNPRNPNIMATSSTDG----------------------------------TACIWDLRSMATDKPEP  407 (536)
Q Consensus       371 ---------~~i~~~p~~~~~l~s~s~dg----------------------------------~i~iwdl~~~~~~~~~~  407 (536)
                               .+++|+|+| +.|++++.|+                                  .|++||+.+++    ..
T Consensus       167 ~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~----~~  241 (723)
T 1xfd_A          167 YEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT----HD  241 (723)
T ss_dssp             HHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC----CC
T ss_pred             EEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc----ee
Confidence                     789999998 5777776543                                  79999998754    11


Q ss_pred             ceeec------ccCceeEEEEccCCCeEEEEeC----CCcEEEEeCCCCCcceEEeccCCCCceee--eeEEEEcCCCCE
Q 009380          408 MKVLS------HKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFENTSMIHHNNQTGRWIS--SFRAIWGWDDSC  475 (536)
Q Consensus       408 ~~~~~------~~~~v~~l~~sp~g~~l~t~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~g~~  475 (536)
                      ..+..      +...+.+++|+|||++|++.+.    +..|.+||+.+++....+.....  .++.  ...+.|+|||+.
T Consensus       242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE--AWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS--SCCCCCCCCCEECTTSCS
T ss_pred             EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccC--CEEeccCCCceEcCCCCe
Confidence            22222      3678899999999998877653    35799999998876655432211  1111  113679999997


Q ss_pred             EEE--EcCCC------cEEEEc-CCcccc--ceeccCCceeeeeeeEeecCCCCCEEEEEccC---CeEEEEecC
Q 009380          476 VFI--GNMTR------TVEVIS-PAQRRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATGG---GQVYVWTSD  536 (536)
Q Consensus       476 l~~--gs~dg------~I~v~d-~~~~~~--~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D---g~v~iW~~d  536 (536)
                      |+.  +..++      .|.+|| ..++..  ...+..++.... ..+.|+| ++..|+..+.+   +.++||+++
T Consensus       320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~-~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT-KILAYDE-KGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE-EEEEEET-TTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE-eeeEEcC-CCCEEEEEEcCCCCcceEEEEEe
Confidence            765  44566      577788 444431  455543332222 3368898 56887655544   889999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=3e-22  Score=227.10  Aligned_cols=316  Identities=9%  Similarity=-0.040  Sum_probs=234.3

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccc-----------cCCceEEEEEE-ecCCccEEE
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARI-----------MPGRITQMKFL-PCSDVRMVV  252 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~-----------~~~~I~~v~~~-p~~~~~~l~  252 (536)
                      .+....|+|||+.++..           .++.|.+|++..........           |...|.+++|+ |  +|++|+
T Consensus       246 ~~~~~~~SpDG~~la~~-----------~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p--dG~~la  312 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFS-----------KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPL--DGDLIA  312 (1045)
T ss_dssp             SSCEEEEEESSSCEEEE-----------ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEEC--GGGCEE
T ss_pred             CcceeeEcCCCCEEEEE-----------eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCC--CCCEEE
Confidence            46677899999988854           36788888873222111111           33479999999 9  999999


Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCC-CEEEEEEecCCCCEEEEEECCCeEE-EEECCCCeEEEeecCCCceeEE
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLG-PISGIVTQQYCLSKIFTSCYDGLIR-LMDAEKEVFDLVYSSEYAVFSL  330 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~s~s~dg~I~-vwd~~~~~~~~~~~~~~~i~~l  330 (536)
                      +++ ++.|.+|++..     .....+..|.. .+.+++|+ ++ ..|++++.++.|. +||+.++....+..+...+..+
T Consensus       313 ~~~-~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~  384 (1045)
T 1k32_A          313 FVS-RGQAFIQDVSG-----TYVLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM  384 (1045)
T ss_dssp             EEE-TTEEEEECTTS-----SBEEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEE
T ss_pred             EEE-cCEEEEEcCCC-----CceEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceEecCCccceeee
Confidence            888 78999999875     23445667777 89999999 88 8899998888899 9999988777666777889999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC----------CcEEEEeCCCC
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD----------GTACIWDLRSM  400 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d----------g~i~iwdl~~~  400 (536)
                      +|+|++ ..|++++.++.|++||+.+++....+..|...+.+++|+|++ ++|++++.+          +.|++||+.++
T Consensus       385 ~~SpDG-~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g  462 (1045)
T 1k32_A          385 GVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGR  462 (1045)
T ss_dssp             EECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred             EECCCC-CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCC
Confidence            999998 899999999999999999998877777899999999999988 577776654          38999999874


Q ss_pred             CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc-------ceEEec-------------------
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN-------TSMIHH-------------------  454 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~-------~~~~~~-------------------  454 (536)
                           ....+..|...+.+++|+|+|++|++++.++...+|+......       ...+..                   
T Consensus       463 -----~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  537 (1045)
T 1k32_A          463 -----KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA  537 (1045)
T ss_dssp             -----EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCC
T ss_pred             -----cEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccc
Confidence                 3445557888899999999999999999988888887543221       000000                   


Q ss_pred             -----cC-------CCCceeeeeEEEEcCCCCEEEE-------------EcCCCcEEEEcCCccccceeccCCceeeeee
Q 009380          455 -----NN-------QTGRWISSFRAIWGWDDSCVFI-------------GNMTRTVEVISPAQRRSVATLQSPYISAIPC  509 (536)
Q Consensus       455 -----~~-------~~~~~~~~~~~~~s~~g~~l~~-------------gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~  509 (536)
                           ..       .....-....+.++|+|.++++             ......|.+||+.+++. ..+.    .. ..
T Consensus       538 ~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~----~~-v~  611 (1045)
T 1k32_A          538 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-TEVK----NN-LT  611 (1045)
T ss_dssp             CCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-EEEE----EE-EE
T ss_pred             ccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcE-EEee----cC-cc
Confidence                 00       0000011223678999987775             12245788899988754 3332    12 24


Q ss_pred             eEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          510 RFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       510 ~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .+.++| |+.+|++++.+ .|++||++
T Consensus       612 ~~~~S~-DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          612 DLRLSA-DRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             EEEECT-TSCEEEEEETT-SCEEEEES
T ss_pred             eEEECC-CCCEEEEEcCC-cEEEEeCc
Confidence            578888 67999998876 79999974

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=2.2e-22  Score=219.38  Aligned_cols=310  Identities=11%  Similarity=0.002  Sum_probs=207.5

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCC---ceEEEEEEecCCccEEEEEeCC---
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPG---RITQMKFLPCSDVRMVVAGSKL---  257 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~---~I~~v~~~p~~~~~~l~tg~~d---  257 (536)
                      .+..+.|+|||++++.           +.||.|.+|++..... .+...|..   .|.+++|+|  ||++|++++.+   
T Consensus        18 ~~~~~~~spdg~~~~~-----------~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp--Dg~~l~~~~~~~~~   84 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-----------EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP--DREYALFSYNVEPI   84 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-----------CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT--TSSEEEEEESCCCC
T ss_pred             cccccEEcCCCcEEEE-----------eCCCCEEEEECCCCcEEEEeccccccccccceEEECC--CCCEEEEEecCccc
Confidence            3567899999996652           3567999999865433 23334443   499999999  99999999764   


Q ss_pred             ------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCc----
Q 009380          258 ------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYA----  326 (536)
Q Consensus       258 ------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~----  326 (536)
                            +.|.+||+.++.  ...+.....|...+..++|+|+| +.|++++. +.|++||+.++....+... ...    
T Consensus        85 ~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~  160 (723)
T 1xfd_A           85 YQHSYTGYYVLSKIPHGD--PQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (723)
T ss_dssp             SSSCCCSEEEEEESSSCC--CEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eeecceeeEEEEECCCCc--eEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCceEEEecCCCCCceEC
Confidence                  788899998732  11122233455568899999999 88888885 7999999998876555432 222    


Q ss_pred             --------------eeEEEecCCCCCEEEEEECCC----------------------------------eEEEEECCCCc
Q 009380          327 --------------VFSLSQQPNNVNTLYFGEGQG----------------------------------GLNIWDVRSRK  358 (536)
Q Consensus       327 --------------i~~l~~~~~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~  358 (536)
                                    +.+++|+|++ +.|++++.++                                  .|++||+.+++
T Consensus       161 g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~  239 (723)
T 1xfd_A          161 GLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT  239 (723)
T ss_dssp             EECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred             cccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence                          3789999999 7777776442                                  79999999887


Q ss_pred             cceeEecc------CCCeEEEEEecCCCCEEEEEeC----CCcEEEEeCCCCCCCCCCccee--ecccCcee----EEEE
Q 009380          359 SATEWLLH------EARINTIDFNPRNPNIMATSST----DGTACIWDLRSMATDKPEPMKV--LSHKRAVH----SAYF  422 (536)
Q Consensus       359 ~~~~~~~h------~~~i~~i~~~p~~~~~l~s~s~----dg~i~iwdl~~~~~~~~~~~~~--~~~~~~v~----~l~~  422 (536)
                      ....+..+      ...+.+++|+|+| +++++.+.    +..|++||+.+++     ....  ..+...+.    .++|
T Consensus       240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~~~~~  313 (723)
T 1xfd_A          240 HDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGV-----CTKKHEDESEAWLHRQNEEPVF  313 (723)
T ss_dssp             CCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCC-----EEEEEEEECSSCCCCCCCCCEE
T ss_pred             eeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCc-----ceEEEEeccCCEEeccCCCceE
Confidence            65666543      5678999999988 56665542    3579999998753     2222  23344443    7899


Q ss_pred             ccCCCeEEEE--eCCC------cEEEEe-CCCCCc--ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEE
Q 009380          423 SPSGSSLATT--SFDD------TIGIWS-GVNFEN--TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVI  488 (536)
Q Consensus       423 sp~g~~l~t~--s~dg------~I~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~  488 (536)
                      +|+|+.|+..  ..++      .|.+|| ..++..  ...+..    +.+...-.+.|+|+|+.|+..+.+   +.+++|
T Consensus       314 spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          314 SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS----GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC----SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             cCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec----CCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence            9999977754  4566      577787 344331  333321    111111125799999998765544   788999


Q ss_pred             cCCccc--cceeccCC--ceeeeeeeEeecCCCCCEEEEE
Q 009380          489 SPAQRR--SVATLQSP--YISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       489 d~~~~~--~~~~l~~~--~~~~~~~~~~~~p~~~~~lasg  524 (536)
                      ++....  ....+...  +...+ ..++|+| ++.+|+..
T Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~sp-dg~~l~~~  427 (723)
T 1xfd_A          390 SANTVGNFNRQCLSCDLVENCTY-FSASFSH-SMDFFLLK  427 (723)
T ss_dssp             EECSSTTCCCBCSSTTSSSSCCC-CEEEECT-TSSEEEEE
T ss_pred             EEeCCCCCCcceecccccCCCCe-EEEEECC-CCCEEEEE
Confidence            886432  33334321  12222 3578888 55766654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4e-22  Score=195.81  Aligned_cols=263  Identities=9%  Similarity=-0.014  Sum_probs=190.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-C-CEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-G-PISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEY  325 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~-~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~  325 (536)
                      .+|++++.++.|.+||+.+    ...+..+.... . .+.+++|+|++ +++ ++++.++.|.+||+.+++.........
T Consensus         2 ~~~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~   76 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGG-RIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTS-SEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             cEEEEcCCCCeEEEEECCC----CcEEEEEEcCCCCCCccceEEcCCC-CEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence            5789999999999999987    55555554322 2 47889999998 655 556668999999999887765444333


Q ss_pred             ------ceeEEEecCCCCCEEEEEE------------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          326 ------AVFSLSQQPNNVNTLYFGE------------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       326 ------~i~~l~~~~~~~~~l~~g~------------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                            .+.+++|+|++ +.++++.            .++.|.+||+.+++.+..+.. ...+.+++|+|++. +|+++ 
T Consensus        77 ~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~-  152 (337)
T 1pby_B           77 PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS-KLYGL-  152 (337)
T ss_dssp             TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS-CEEEE-
T ss_pred             cccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC-EEEEe-
Confidence                  67899999998 6777775            578999999998887777664 55678899999884 55555 


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC------------------------cEEEEeC
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD------------------------TIGIWSG  443 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg------------------------~I~iwd~  443 (536)
                       ++.|.+||+.+++     .............+.|+|+|.+++..+.++                        .|.+||+
T Consensus       153 -~~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          153 -GRDLHVMDPEAGT-----LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             -SSSEEEEETTTTE-----EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             -CCeEEEEECCCCc-----EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence             6889999998753     222222111112337899988776555332                        4689999


Q ss_pred             CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      .+++.. .+.......   ....+.|+|+|++|+++  ++.|.+||+.+++.+..+..+..   +..+.|+| ++.+|++
T Consensus       227 ~~~~~~-~~~~~~~~~---~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l~~  296 (337)
T 1pby_B          227 ETGEMA-MREVRIMDV---FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS---YYSVNVST-DGSTVWL  296 (337)
T ss_dssp             TTCCEE-EEEEEECSS---CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC---CCEEEECT-TSCEEEE
T ss_pred             CCCCce-EeecCCCCC---ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc---eeeEEECC-CCCEEEE
Confidence            887765 332211111   22337899999999988  78999999999888777764322   24678888 5688888


Q ss_pred             EccCCeEEEEecC
Q 009380          524 ATGGGQVYVWTSD  536 (536)
Q Consensus       524 gs~Dg~v~iW~~d  536 (536)
                      ++.++.|.+||++
T Consensus       297 ~~~~~~i~v~d~~  309 (337)
T 1pby_B          297 GGALGDLAAYDAE  309 (337)
T ss_dssp             ESBSSEEEEEETT
T ss_pred             EcCCCcEEEEECc
Confidence            9999999999974

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=4.4e-21  Score=189.87  Aligned_cols=277  Identities=10%  Similarity=0.044  Sum_probs=202.5

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEE-EEEeCCCcEEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMV-VAGSKLGNITF  262 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~i  262 (536)
                      ..+..+.++++++.+........   ....++.|.+||...........+...+..++|+|  +++++ +++..++.|.+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~  115 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINN--TTQTLWFGNTVNSAVTA  115 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEEEEEESSCCCSEEEET--TTTEEEEEETTTTEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEEEEecCCCcceEEECC--CCCEEEEEecCCCEEEE
Confidence            46678899999987764411110   01136789999975443222222356688999999  88855 55566799999


Q ss_pred             EECCCCCCCCCceEEeccCCCC---------EEEEEEecCCCCEEEEEE--CCCeEEEEECCCCeEEEeec-CCCceeEE
Q 009380          263 WNLDSQQDEDNGIYLFRTHLGP---------ISGIVTQQYCLSKIFTSC--YDGLIRLMDAEKEVFDLVYS-SEYAVFSL  330 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s--~dg~I~vwd~~~~~~~~~~~-~~~~i~~l  330 (536)
                      ||+.+    +..+..+..+...         +.++.|+|++ +++++++  .++.|.+||+.+++...... +...+.++
T Consensus       116 ~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (353)
T 3vgz_A          116 IDAKT----GEVKGRLVLDDRKRTEEVRPLQPRELVADDAT-NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGL  190 (353)
T ss_dssp             EETTT----CCEEEEEESCCCCCCSSCCCCEEEEEEEETTT-TEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred             EeCCC----CeeEEEEecCCCccccccCCCCCceEEECCCC-CEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence            99987    5666666554322         7899999998 7777665  48899999999998877766 56668999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCccceeEec----cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL----HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE  406 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~----h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~  406 (536)
                      +|+|++ +.+++++.++.|.+||+.+++.+..+..    +...+.+++|+|++..++++...++.|.+||+.+++     
T Consensus       191 ~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-----  264 (353)
T 3vgz_A          191 ALDSEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-----  264 (353)
T ss_dssp             EEETTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-----
T ss_pred             EECCCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-----
Confidence            999998 7889999999999999999988777664    456788999999985555555566999999998753     


Q ss_pred             cceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          407 PMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       407 ~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                      ......... ...++|+|+|+++++++ .++.|.+||..+++....+....    ..  ..++|+|+|++|++++.++
T Consensus       265 ~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~----~~--~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          265 ILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT----HP--NSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS----EE--EEEEECTTSCEEEEEEECC
T ss_pred             EEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC----CC--CeEEEcCCCCEEEEEEccc
Confidence            222222222 26799999999666655 68999999999888776664321    22  3477999999888776654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=4.1e-22  Score=195.70  Aligned_cols=271  Identities=10%  Similarity=0.016  Sum_probs=199.8

Q ss_pred             cccccceEEecccccCccccccccCC---ceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEecc-C---
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIMPG---RITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRT-H---  281 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~~~---~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h---  281 (536)
                      ..+.++.|.+||+..........+..   .+.+++|+|  +++++ +++..++.|.+||+.+    ...+..+.. +   
T Consensus         6 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~   79 (337)
T 1pby_B            6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVT----GETLGRIDLSTPEE   79 (337)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTT----CCEEEEEECCBTTE
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeCCCCeEEEEECCC----CCeEeeEEcCCccc
Confidence            45678899999975433221122234   589999999  88665 5566678999999987    455544432 2   


Q ss_pred             -CCCEEEEEEecCCCCEEEEEE------------CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe
Q 009380          282 -LGPISGIVTQQYCLSKIFTSC------------YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG  348 (536)
Q Consensus       282 -~~~V~~l~~~~~~~~~l~s~s------------~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~  348 (536)
                       ...+.+++|+|++ ++|++++            .++.|.+||+.+++..........+.+++|+|++ +.|+++  ++.
T Consensus        80 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~  155 (337)
T 1pby_B           80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG-SKLYGL--GRD  155 (337)
T ss_dssp             EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS-SCEEEE--SSS
T ss_pred             ccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC-CEEEEe--CCe
Confidence             2256789999998 8888886            5799999999998877666666778999999998 666666  689


Q ss_pred             EEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-----------------------cEEEEeCCCCCCCCC
Q 009380          349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-----------------------TACIWDLRSMATDKP  405 (536)
Q Consensus       349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-----------------------~i~iwdl~~~~~~~~  405 (536)
                      |.+||+.+++.+..+..+.. ...+.|+|++..+++++..++                       .|.+||+.+++.   
T Consensus       156 i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---  231 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---  231 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---
T ss_pred             EEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---
Confidence            99999999988777664331 112378898854444443333                       468999988641   


Q ss_pred             CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      .......+...+.+++|+|+|++++++  ++.|.+||+.+++....+....    .  ...++|+|+|++|++++.++.|
T Consensus       232 ~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~----~--~~~~~~s~dg~~l~~~~~~~~i  303 (337)
T 1pby_B          232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH----S--YYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS----C--CCEEEECTTSCEEEEESBSSEE
T ss_pred             eEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC----c--eeeEEECCCCCEEEEEcCCCcE
Confidence            123334566788899999999999888  7999999999887766664322    1  2237799999999999999999


Q ss_pred             EEEcCCccccceeccCC
Q 009380          486 EVISPAQRRSVATLQSP  502 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~~~  502 (536)
                      .+||+.+++.+..+..+
T Consensus       304 ~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          304 AAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEETTTCCEEEEEECG
T ss_pred             EEEECcCCcEEEEEEcC
Confidence            99999999888877654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=8.7e-22  Score=214.16  Aligned_cols=276  Identities=10%  Similarity=0.044  Sum_probs=193.3

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ..|.+++|+|  + ..++.+. ++.|++||+.+    + ....+..+...+.+++|+|+| ++|+++ .|+.|++||+.+
T Consensus        82 ~~v~~~~~sp--d-~~~~~~~-~~~i~~~d~~~----~-~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~  150 (706)
T 2z3z_A           82 FPSFRTLDAG--R-GLVVLFT-QGGLVGFDMLA----R-KVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGK  150 (706)
T ss_dssp             CCCEEEEETT--T-TEEEEEE-TTEEEEEETTT----T-EEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBC
T ss_pred             cCceeEEECC--C-CeEEEEE-CCEEEEEECCC----C-ceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCc
Confidence            5699999999  8 5555554 59999999986    3 344455677789999999999 888885 689999999998


Q ss_pred             -----CeEEEeecCCCc---------------eeEEEecCCCCCEEEEEE------------------------------
Q 009380          315 -----EVFDLVYSSEYA---------------VFSLSQQPNNVNTLYFGE------------------------------  344 (536)
Q Consensus       315 -----~~~~~~~~~~~~---------------i~~l~~~~~~~~~l~~g~------------------------------  344 (536)
                           +....+......               +.+++|+|++ +.|++++                              
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence                 766554433222               5899999999 7888776                              


Q ss_pred             ---CCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCcceee--c
Q 009380          345 ---GQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDG-----TACIWDLRSMATDKPEPMKVL--S  412 (536)
Q Consensus       345 ---~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg-----~i~iwdl~~~~~~~~~~~~~~--~  412 (536)
                         .+..|.+||+.+++......  .|...+.+++|+|++ +.|++++.++     .|++||+.+++    ....+.  .
T Consensus       230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~----~~~~~~~~~  304 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGR----FVRTLFVET  304 (706)
T ss_dssp             SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCC----EEEEEEEEE
T ss_pred             CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCc----eeeEEEEcc
Confidence               44689999999887543332  466789999999988 6777776665     89999998852    122222  2


Q ss_pred             ccC---ceeEEEEcc--CCCeEEEEeCCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CC--
Q 009380          413 HKR---AVHSAYFSP--SGSSLATTSFDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TR--  483 (536)
Q Consensus       413 ~~~---~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg--  483 (536)
                      +..   .+.++.|+|  +|+++++++.|+.++||++. ++.....+...   ...+.. .+.|+|+|+.|+.++. ++  
T Consensus       305 ~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~v~~-~~~~spdg~~l~~~~~~~~~~  380 (706)
T 2z3z_A          305 DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWEVTN-FAGFDPKGTRLYFESTEASPL  380 (706)
T ss_dssp             CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS---SSCEEE-EEEECTTSSEEEEEESSSCTT
T ss_pred             CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC---CeEEEe-eeEEcCCCCEEEEEecCCCCc
Confidence            222   346789999  99999999999999999876 44444433211   111111 1579999988765544 33  


Q ss_pred             --cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC----CeEEEEecC
Q 009380          484 --TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG----GQVYVWTSD  536 (536)
Q Consensus       484 --~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D----g~v~iW~~d  536 (536)
                        .|..||..+++ +..+. +... + ..++|+| ++.+|+....+    +.|++||++
T Consensus       381 ~~~l~~~d~~~~~-~~~l~-~~~~-~-~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          381 ERHFYCIDIKGGK-TKDLT-PESG-M-HRTQLSP-DGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             CBEEEEEETTCCC-CEESC-CSSS-E-EEEEECT-TSSEEEEEEECSSCSCEEEEEESS
T ss_pred             eEEEEEEEcCCCC-ceecc-CCCc-e-EEEEECC-CCCEEEEEecCCCCCcEEEEEECC
Confidence              67777777764 34443 2222 2 3578898 56777766443    569999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=9e-22  Score=189.03  Aligned_cols=255  Identities=9%  Similarity=0.022  Sum_probs=182.0

Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEeec-C-CCceeE
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLVYS-S-EYAVFS  329 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~~~-~-~~~i~~  329 (536)
                      .++.++.|++||+.+    . ....+..|...|.+++|+|++ .+|++++ ++.|++||+.+ +....+.. + ...+.+
T Consensus        17 ~~~~~~~i~~~d~~~----~-~~~~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~   89 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRT----R-KMRVVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNND   89 (297)
T ss_dssp             -CCCCEEEEEEETTT----T-EEEEEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSC
T ss_pred             CCCcceeEEEEeCCC----C-ceeeeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCCCCceEeccccccccccc
Confidence            346789999999986    3 344566788999999999999 8888877 88999999998 77665553 3 367899


Q ss_pred             EEecCCCCCEEEEEE--CCC--eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          330 LSQQPNNVNTLYFGE--GQG--GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       330 l~~~~~~~~~l~~g~--~dg--~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                      ++|+|++ +.|++++  .++  .|..|++.++. ...+.. ...+..++|+|++..++++++.++.++||++....   .
T Consensus        90 ~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---~  163 (297)
T 2ojh_A           90 HGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---G  163 (297)
T ss_dssp             CEECTTS-SEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT---C
T ss_pred             eEECCCC-CEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCC---C
Confidence            9999998 7888888  333  45555555544 344443 34589999999985555588889999999965321   2


Q ss_pred             CcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCC-CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGV-NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-  482 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-  482 (536)
                      ....+..+...+.++.|+|+|++|++++ .++.++||++. .......+..   ..  .....+.|+|+|++|++++.+ 
T Consensus       164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD---SA--YGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC---CS--EEEEEEEECTTSSEEEEEEEET
T ss_pred             cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec---CC--cccCCeEECCCCCEEEEEEcCC
Confidence            3445557788999999999999888766 58999999876 3333333321   11  233447899999999888765 


Q ss_pred             ----------CcEEEEcCCccccc--eeccCCceeeeeeeEeecCCCCCEEEEEccCC
Q 009380          483 ----------RTVEVISPAQRRSV--ATLQSPYISAIPCRFHAHPHQVGTLAGATGGG  528 (536)
Q Consensus       483 ----------g~I~v~d~~~~~~~--~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg  528 (536)
                                +.|.+||+.+++..  ..+.++....  ..+.|+| ++.+|++++.+.
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~--~~~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTM--NSPNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTS--CSCCBCT-TSSEEEEEEECC
T ss_pred             CCCcccccCceEEEEEecCCCCceeeeccCCCCccc--ccceECC-CCCEEEEEEecc
Confidence                      56999999887653  3332332222  3578898 568888777653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=2.3e-21  Score=197.73  Aligned_cols=216  Identities=14%  Similarity=0.124  Sum_probs=161.7

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCC------CCCceE-----EeccCCC
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQD------EDNGIY-----LFRTHLG  283 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~------~~~~~~-----~~~~h~~  283 (536)
                      +.+++|+...      ......++.+++++  ++.+|++|+.+| |+||+......      ....+.     ....|..
T Consensus        23 ~~vri~~~~~------~~~~~~~n~lavs~--~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (434)
T 2oit_A           23 KKVRIFDSPE------ELPKERSSLLAVSN--KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF   93 (434)
T ss_dssp             CEEECSCCCS------SCCCSCCBCEEEET--TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred             eeEEecCCcc------ccCCCCccEEEEec--CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence            3677776421      12345689999999  889999999887 89987542100      001111     1124567


Q ss_pred             CEEEEEEecCCCCEEE----EEECCCeEEEEECCCC--------e----EEEeecCCCceeEEEecCCCCCEEEEEECCC
Q 009380          284 PISGIVTQQYCLSKIF----TSCYDGLIRLMDAEKE--------V----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG  347 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~----s~s~dg~I~vwd~~~~--------~----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg  347 (536)
                      .|.+++|+|++ ++|+    +++.|+.|++||+.++        +    .....+|...|.+++|+|++.++|++++.||
T Consensus        94 ~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            89999999998 8888    7888999999998754        1    2233357889999999998558999999999


Q ss_pred             eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-------cccCceeEE
Q 009380          348 GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-------SHKRAVHSA  420 (536)
Q Consensus       348 ~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-------~~~~~v~~l  420 (536)
                      +|++||++++..+....+|...|.+++|+|++ ++|++|+.||.|++||++ ++    ....+.       .|...|.++
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~----~~~~~~~~~~~~~~~~~~v~~v  246 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQ----EKKVIPCPPFYESDHPVRVLDV  246 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CC----EEEEECCCTTCCTTSCEEEEEE
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cc----ccccccCCcccCCCCceeEEEE
Confidence            99999999987766667789999999999987 789999999999999998 32    111111       234589999


Q ss_pred             EEccCCCeEEEEe-CCC------cEEEEeCCCC
Q 009380          421 YFSPSGSSLATTS-FDD------TIGIWSGVNF  446 (536)
Q Consensus       421 ~~sp~g~~l~t~s-~dg------~I~iwd~~~~  446 (536)
                      .|++++.++++.+ .||      .+++|++...
T Consensus       247 ~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          247 LWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999887775533 443      3899999865

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=8.4e-21  Score=187.86  Aligned_cols=277  Identities=10%  Similarity=0.111  Sum_probs=180.7

Q ss_pred             cccceEEecccccCcccc----ccccCCceEEEEEEecCCccEEEEEeC--CCcEEEEECCCCCCCCCceEEeccCCCCE
Q 009380          212 EVGSCVDIGSLTLKPENI----ARIMPGRITQMKFLPCSDVRMVVAGSK--LGNITFWNLDSQQDEDNGIYLFRTHLGPI  285 (536)
Q Consensus       212 ~~dg~v~lw~~~~~~~~~----~~~~~~~I~~v~~~p~~~~~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~h~~~V  285 (536)
                      +.++.+.+|.++......    ...+...+..++|+|  +|++++++..  ++.|.+|++..+.  ...+..+..+...+
T Consensus        13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp--dg~l~~~~~~~~~~~v~~~~~~~g~--~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA--KDCLYSVDKEDDEGGIAAWQIDGQT--AHKLNTVVAPGTPP   88 (347)
T ss_dssp             SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT--TCEEEEEEEETTEEEEEEEEEETTE--EEEEEEEEEESCCC
T ss_pred             CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc--CCeEEEEEecCCCceEEEEEecCCc--EEEeeeeecCCCCC
Confidence            345578888775432221    123457788899999  8884444432  6899999996521  22444555677888


Q ss_pred             EEEEEecCCCCEEEEEE-CCCeEEEEECC-CCeEEEe--ecC----------CCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380          286 SGIVTQQYCLSKIFTSC-YDGLIRLMDAE-KEVFDLV--YSS----------EYAVFSLSQQPNNVNTLYFGEGQGGLNI  351 (536)
Q Consensus       286 ~~l~~~~~~~~~l~s~s-~dg~I~vwd~~-~~~~~~~--~~~----------~~~i~~l~~~~~~~~~l~~g~~dg~i~i  351 (536)
                      ..++|+|++ ++|++++ .++.|.+|++. ++....+  ..+          ...+.+++|+|++ +++++...++.|.+
T Consensus        89 ~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~  166 (347)
T 3hfq_A           89 AYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYV  166 (347)
T ss_dssp             SEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred             EEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCC-cEEEEeCCCCEEEE
Confidence            999999999 8888887 68999999996 3333222  211          1247889999999 56666667889999


Q ss_pred             EECC-CCccc--eeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc------CceeEEE
Q 009380          352 WDVR-SRKSA--TEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK------RAVHSAY  421 (536)
Q Consensus       352 ~d~~-~~~~~--~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~------~~v~~l~  421 (536)
                      ||+. +++..  ..+.. ....+..++|+|++..+++++..++.|.+|++.................      ..+..++
T Consensus       167 ~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  246 (347)
T 3hfq_A          167 YNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR  246 (347)
T ss_dssp             EEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred             EEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence            9998 44432  22222 2346788999999854566667789999999875211000111111111      4588999


Q ss_pred             EccCCCeEE-EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-CcEEEE--cCCccccc
Q 009380          422 FSPSGSSLA-TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-RTVEVI--SPAQRRSV  496 (536)
Q Consensus       422 ~sp~g~~l~-t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-g~I~v~--d~~~~~~~  496 (536)
                      |+|+|++|+ +...++.|.+|++........+......+...  ..++|+|+|++|++++.+ +.|.+|  |..+++..
T Consensus       247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~--~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP--RDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC--CEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc--CeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            999999775 55568999999987322222222111112222  237799999998888765 889999  55566543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=4.4e-21  Score=203.81  Aligned_cols=271  Identities=11%  Similarity=-0.047  Sum_probs=193.7

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEEC---CCe
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCY---DGL  306 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~---dg~  306 (536)
                      .+..+|++++|+|  ||+.||+++. ||++.||++..     .....+..|. ..+..+.|+|+  .++++++.   +..
T Consensus        19 ~~~~~~~~~~~~~--DG~~la~~s~~~g~~~lw~~~~-----g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~   89 (582)
T 3o4h_A           19 LIAVEKYSLQGVV--DGDKLLVVGFSEGSVNAYLYDG-----GETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQ   89 (582)
T ss_dssp             HHHSCEEEEEEEE--TTTEEEEEEEETTEEEEEEEET-----TEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCC
T ss_pred             HhccchheeecCC--CCCeEEEEEccCCceeEEEEcC-----CCcEeeecccccccccccCCCC--eEEEEeccCCCCcc
Confidence            3466799999999  9999999877 99999999853     3445555555 68999999998  67777775   454


Q ss_pred             EEEEE--C--CCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          307 IRLMD--A--EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       307 I~vwd--~--~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      ..+|.  .  ..+.. .+. ....+...+|+|++...+++...++.+.+||+.+++.......+ .  .+++|+||| ++
T Consensus        90 ~~l~~~~~~~~g~~~-~l~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG-~~  163 (582)
T 3o4h_A           90 HALFKVNTSRPGEEQ-RLE-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRG-DL  163 (582)
T ss_dssp             EEEEEEETTSTTCCE-ECT-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEET-TE
T ss_pred             eEEEEEeccCCCccc-ccc-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCC-CE
Confidence            55654  4  33333 222 23345567888888666666666667779999988765444433 3  889999988 68


Q ss_pred             EEEEeCC----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--cEEEEeCCCCCcceEEeccC
Q 009380          383 MATSSTD----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       383 l~s~s~d----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--~I~iwd~~~~~~~~~~~~~~  456 (536)
                      |++++.+    +.|++||+.+++     ...+..|...+.+++|+|||++|+++..++  .|++||+.+++.. .+....
T Consensus       164 la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~  237 (582)
T 3o4h_A          164 IAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS  237 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC
T ss_pred             EEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC
Confidence            8877766    789999998753     345567888899999999999999888888  8999999887765 332111


Q ss_pred             CCCceeee------eEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCe-
Q 009380          457 QTGRWISS------FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQ-  529 (536)
Q Consensus       457 ~~~~~~~~------~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~-  529 (536)
                         ..+..      ....|+|||.++++++.++.+++|++  ++.+....   . .+ ..++|+  ++.++++++.+.. 
T Consensus       238 ---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~~---~-~v-~~~~~s--dg~~l~~~s~~~~p  305 (582)
T 3o4h_A          238 ---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAPQ---G-NH-GRVVLW--RGKLVTSHTSLSTP  305 (582)
T ss_dssp             ---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCCS---S-EE-EEEEEE--TTEEEEEEEETTEE
T ss_pred             ---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccCC---C-ce-EEEEec--CCEEEEEEcCCCCC
Confidence               11111      11339999988999999999999999  55544222   1 22 356666  5688888887744 


Q ss_pred             --EEEEec
Q 009380          530 --VYVWTS  535 (536)
Q Consensus       530 --v~iW~~  535 (536)
                        |++|+.
T Consensus       306 ~~l~~~d~  313 (582)
T 3o4h_A          306 PRIVSLPS  313 (582)
T ss_dssp             EEEEEETT
T ss_pred             CeEEEEcC
Confidence              667664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=3.5e-20  Score=183.36  Aligned_cols=276  Identities=9%  Similarity=0.074  Sum_probs=178.4

Q ss_pred             EEEEEe----CCCcEEEEECCCCCCCCCce-EEeccCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCCeEEEe-
Q 009380          250 MVVAGS----KLGNITFWNLDSQQDEDNGI-YLFRTHLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKEVFDLV-  320 (536)
Q Consensus       250 ~l~tg~----~dg~v~iwd~~~~~~~~~~~-~~~~~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~~~~~~-  320 (536)
                      .+++|+    .++.|.+|.++...  +... .....+...+..++|+|++ + |++++.   ++.|.+||+.++....+ 
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~t--g~~~~~~~~~~~~~p~~~a~spdg-~-l~~~~~~~~~~~v~~~~~~~g~~~~~~   79 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTA--KTLTNDGLLAATQNPTYLALSAKD-C-LYSVDKEDDEGGIAAWQIDGQTAHKLN   79 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTT--TEEEEEEEEEECSCCCCEEECTTC-E-EEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCC--CeEEEeeeeeccCCcceEEEccCC-e-EEEEEecCCCceEEEEEecCCcEEEee
Confidence            455553    34578888886532  2221 1233455677889999998 6 555554   68999999987764333 


Q ss_pred             --ecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCC-Cc--cceeEec---------cCCCeEEEEEecCCCCEEEE
Q 009380          321 --YSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRS-RK--SATEWLL---------HEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       321 --~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~-~~--~~~~~~~---------h~~~i~~i~~~p~~~~~l~s  385 (536)
                        ..+...+..++|+|++ ++|++++ .++.|.+||+.. +.  .+..+..         +...+.+++|+|++. ++++
T Consensus        80 ~~~~~~~~p~~~a~spdg-~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~  157 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVDEAR-QLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI  157 (347)
T ss_dssp             EEEEESCCCSEEEEETTT-TEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred             eeecCCCCCEEEEECCCC-CEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence              3356788999999998 7777777 789999999963 22  2223321         123488999999985 7777


Q ss_pred             EeCCCcEEEEeCCC-CCCCCCCcceee-cccCceeEEEEccCCCeEEE-EeCCCcEEEEeCCC--CCcc--eEEeccCC-
Q 009380          386 SSTDGTACIWDLRS-MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVN--FENT--SMIHHNNQ-  457 (536)
Q Consensus       386 ~s~dg~i~iwdl~~-~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t-~s~dg~I~iwd~~~--~~~~--~~~~~~~~-  457 (536)
                      ...++.|.+||+.. +.  ........ .....+..++|+|+|+++++ +..++.|.+|++..  ++..  ..+..... 
T Consensus       158 ~~~~~~v~~~~~~~~g~--~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  235 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQ--LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD  235 (347)
T ss_dssp             ETTTTEEEEEEECTTSC--EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred             eCCCCEEEEEEECCCCc--EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence            77789999999983 21  00111111 23346788999999996666 45688999999874  3321  11111110 


Q ss_pred             CCceeeeeEEEEcCCCCEEEE-EcCCCcEEEEcCCcc---ccceeccCCceeeeeeeEeecCCCCCEEEEEcc-CCeEEE
Q 009380          458 TGRWISSFRAIWGWDDSCVFI-GNMTRTVEVISPAQR---RSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-GGQVYV  532 (536)
Q Consensus       458 ~~~~~~~~~~~~s~~g~~l~~-gs~dg~I~v~d~~~~---~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-Dg~v~i  532 (536)
                      .........++|+|+|++|++ ...++.|.+|++...   +.+..+..+..  .+..++|+| ++.+|++++. ++.|.+
T Consensus       236 ~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~sp-dg~~l~v~~~~~~~v~v  312 (347)
T 3hfq_A          236 YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD--FPRDFDLDP-TEAFVVVVNQNTDNATL  312 (347)
T ss_dssp             CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS--CCCEEEECT-TSSEEEEEETTTTEEEE
T ss_pred             CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC--CcCeEEECC-CCCEEEEEEcCCCcEEE
Confidence            000012334789999998754 556899999998732   33444443221  234688999 5687777765 599999


Q ss_pred             EecC
Q 009380          533 WTSD  536 (536)
Q Consensus       533 W~~d  536 (536)
                      |+++
T Consensus       313 ~~~d  316 (347)
T 3hfq_A          313 YARD  316 (347)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.87  E-value=6.6e-21  Score=207.23  Aligned_cols=278  Identities=9%  Similarity=0.028  Sum_probs=189.5

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCce-EEeccCC-----------------CCEEEEEEecCCCCE
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGI-YLFRTHL-----------------GPISGIVTQQYCLSK  297 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~-~~~~~h~-----------------~~V~~l~~~~~~~~~  297 (536)
                      .+..+.|.    +..+++++.+| | +||+.++    ..+ ..+..|.                 ..|.+++|+|++ .+
T Consensus        27 ~~~~~~w~----g~~~~~~~~~~-i-~~d~~tg----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~-~~   95 (706)
T 2z3z_A           27 YVVGLQWM----GDNYVFIEGDD-L-VFNKANG----KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG-LV   95 (706)
T ss_dssp             -CTTCEEE----TTEEEEEETTE-E-EEEC-----------CEEEEHHHHHTTC-----------CCCEEEEETTTT-EE
T ss_pred             cCCCCcCc----CCeEEEEeCCc-E-EEECCCC----cEeeEEeechhHhhhhccchhccccccccCceeEEECCCC-eE
Confidence            35557776    34566677777 8 9999874    331 2222221                 569999999993 44


Q ss_pred             EEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCC-----CccceeEeccCCC---
Q 009380          298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS-----RKSATEWLLHEAR---  369 (536)
Q Consensus       298 l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~-----~~~~~~~~~h~~~---  369 (536)
                      +++  .++.|++||+.++....+..+...+.+++|+|++ +.|+++ .++.|++||+.+     ++.......+...   
T Consensus        96 ~~~--~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~  171 (706)
T 2z3z_A           96 VLF--TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY  171 (706)
T ss_dssp             EEE--ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred             EEE--ECCEEEEEECCCCceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence            444  3699999999999888777777889999999999 677774 678999999998     7765444433332   


Q ss_pred             -----------eEEEEEecCCCCEEEEEe---------------------------------CCCcEEEEeCCCCCCCCC
Q 009380          370 -----------INTIDFNPRNPNIMATSS---------------------------------TDGTACIWDLRSMATDKP  405 (536)
Q Consensus       370 -----------i~~i~~~p~~~~~l~s~s---------------------------------~dg~i~iwdl~~~~~~~~  405 (536)
                                 +.++.|+|+| ++|++++                                 .+..|++||+.+++.   
T Consensus       172 g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~---  247 (706)
T 2z3z_A          172 GQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT---  247 (706)
T ss_dssp             SSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE---
T ss_pred             ccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce---
Confidence                       4889999988 6777776                                 446799999987531   


Q ss_pred             Cccee-ecccCceeEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCcceEEeccCCCCcee-eeeEEEEcC--CCCEE
Q 009380          406 EPMKV-LSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTSMIHHNNQTGRWI-SSFRAIWGW--DDSCV  476 (536)
Q Consensus       406 ~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~--~g~~l  476 (536)
                      ..... ..|...+.+++|+|+|++|++++.++     .|.+||+.+++....+..... ..++ ....+.|+|  +|++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l  326 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETD-KHYVEPLHPLTFLPGSNNQFI  326 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEC-SSCCCCCSCCEECTTCSSEEE
T ss_pred             EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccC-CCeECccCCceeecCCCCEEE
Confidence            11111 24667899999999999999988775     899999998844333321111 1111 112367999  99999


Q ss_pred             EEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCEEEE-EccCC----eEEEEec
Q 009380          477 FIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLAG-ATGGG----QVYVWTS  535 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las-gs~Dg----~v~iW~~  535 (536)
                      ++++.++.++||.+. ++..+..+..+..... ..+.|+| ++..|+. ++.++    .|+.|++
T Consensus       327 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~-~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~  389 (706)
T 2z3z_A          327 WQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT-NFAGFDP-KGTRLYFESTEASPLERHFYCIDI  389 (706)
T ss_dssp             EEECTTSSCEEEEEETTSCEEEECCCSSSCEE-EEEEECT-TSSEEEEEESSSCTTCBEEEEEET
T ss_pred             EEEccCCccEEEEEECCCCEEEecCCCCeEEE-eeeEEcC-CCCEEEEEecCCCCceEEEEEEEc
Confidence            999999999999876 5556666655433222 3368898 4566654 45554    5666654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=1.2e-19  Score=180.57  Aligned_cols=277  Identities=9%  Similarity=0.094  Sum_probs=181.1

Q ss_pred             ccEEEEEe----CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCC--CeE
Q 009380          248 VRMVVAGS----KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEK--EVF  317 (536)
Q Consensus       248 ~~~l~tg~----~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~--~~~  317 (536)
                      ..++++|+    .++.|.+|.++........+..+  +...+..++|+|++ ++|++++.+    +.|.+|++..  +..
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~--~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~   89 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA--EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTL   89 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE--ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc--cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence            34556664    35689999886432112223333  67778889999999 899999886    8999998865  544


Q ss_pred             EEee---cCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCccceeE---ec-----------cCCCeEEEEEecCC
Q 009380          318 DLVY---SSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATEW---LL-----------HEARINTIDFNPRN  379 (536)
Q Consensus       318 ~~~~---~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~---~~-----------h~~~i~~i~~~p~~  379 (536)
                      ..+.   .+......+++  ++ ++|++++ .++.|.+|++.....+..+   ..           +...+.+++|+|++
T Consensus        90 ~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg  166 (361)
T 3scy_A           90 HLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG  166 (361)
T ss_dssp             EEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred             EEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence            3332   24456777887  55 5666665 6789999999754332211   11           12345889999998


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCC--C-C------cceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcc
Q 009380          380 PNIMATSSTDGTACIWDLRSMATDK--P-E------PMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENT  449 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~~--~-~------~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~  449 (536)
                      ..+++++..++.|.+|++.......  . .      ......+...+.+++|+|+|+++++++ .++.|.+||+.++...
T Consensus       167 ~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~  246 (361)
T 3scy_A          167 KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD  246 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred             CEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE
Confidence            5455555568899999987643100  0 0      111234556788999999999887777 6899999999865432


Q ss_pred             eE--EeccCCCCceeeeeEEEEcCCCCEEEEEcCC--CcEEEEcCC--ccc--cceeccCCceeeeeeeEeecCCCCCEE
Q 009380          450 SM--IHHNNQTGRWISSFRAIWGWDDSCVFIGNMT--RTVEVISPA--QRR--SVATLQSPYISAIPCRFHAHPHQVGTL  521 (536)
Q Consensus       450 ~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d--g~I~v~d~~--~~~--~~~~l~~~~~~~~~~~~~~~p~~~~~l  521 (536)
                      ..  +........  ....++|+|+|++|++++.+  +.|.+|++.  +++  .+..+..   ...+..++|+| ++.+|
T Consensus       247 ~~~~~~~~~~~~~--~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~sp-dg~~l  320 (361)
T 3scy_A          247 EIQTVAADTVNAQ--GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT---GIHPRNFIITP-NGKYL  320 (361)
T ss_dssp             EEEEEESCSSCCC--CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC---SSCCCEEEECT-TSCEE
T ss_pred             EeEEEecCCCCCC--CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC---CCCCceEEECC-CCCEE
Confidence            22  221111111  12347899999998776654  889999985  343  3333332   12234688999 66877


Q ss_pred             EEEc-cCCeEEEEecC
Q 009380          522 AGAT-GGGQVYVWTSD  536 (536)
Q Consensus       522 asgs-~Dg~v~iW~~d  536 (536)
                      ++++ .++.|.+|++|
T Consensus       321 ~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          321 LVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEECCCCCEEEEEEE
Confidence            7776 77999998654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=2.2e-20  Score=198.47  Aligned_cols=274  Identities=8%  Similarity=-0.015  Sum_probs=198.1

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccC-CceEEEEEEecCCccEEEEEeC---CC
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMP-GRITQMKFLPCSDVRMVVAGSK---LG  258 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~-~~I~~v~~~p~~~~~~l~tg~~---dg  258 (536)
                      ...|.++.|+|||+.++..         ...+|.+.||++.......+..|. ..+.+++|+|  | +++++++.   +.
T Consensus        21 ~~~~~~~~~~~DG~~la~~---------s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~   88 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVV---------GFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGV--G-RVILVRDVSKGAE   88 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEE---------EEETTEEEEEEEETTEEEECCSSCCSEECEECTTC--S-EEEEEEECSTTSC
T ss_pred             ccchheeecCCCCCeEEEE---------EccCCceeEEEEcCCCcEeeecccccccccccCCC--C-eEEEEeccCCCCc
Confidence            3568999999999999965         234789999998544433334444 6899999999  8 77877765   45


Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVN  338 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~  338 (536)
                      ...||.+..... +... .+..+ ..+...+|+|++...+++.+.++.+.+||+.++....+..+..  .+++|+|+| +
T Consensus        89 ~~~l~~~~~~~~-g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG-~  162 (582)
T 3o4h_A           89 QHALFKVNTSRP-GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRG-D  162 (582)
T ss_dssp             CEEEEEEETTST-TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEET-T
T ss_pred             ceEEEEEeccCC-Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCC-C
Confidence            566766543100 2222 33222 2344678999885555555555566699999998777665544  899999999 7


Q ss_pred             EEEEEECC----CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceeec
Q 009380          339 TLYFGEGQ----GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVLS  412 (536)
Q Consensus       339 ~l~~g~~d----g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~~  412 (536)
                      .|++++.+    +.|++||+.+++.. .+..|...+..++|+||| ++|++++.++  .|++||+.+++    .. .+..
T Consensus       163 ~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~----~~-~~~~  235 (582)
T 3o4h_A          163 LIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGS----VE-DLEL  235 (582)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCC----EE-ECCC
T ss_pred             EEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCc----EE-EccC
Confidence            88877766    78999999888754 667788899999999998 6777888888  89999998753    22 4446


Q ss_pred             ccCceeEEE--------EccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-
Q 009380          413 HKRAVHSAY--------FSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-  483 (536)
Q Consensus       413 ~~~~v~~l~--------~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-  483 (536)
                      |...+..+.        |+|+|.++++++.|++++||++  ++...     ... ..+.  .+.|+ +++++++++.+. 
T Consensus       236 ~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----~~~-~~v~--~~~~s-dg~~l~~~s~~~~  304 (582)
T 3o4h_A          236 PSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----APQ-GNHG--RVVLW-RGKLVTSHTSLST  304 (582)
T ss_dssp             SCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----CCS-SEEE--EEEEE-TTEEEEEEEETTE
T ss_pred             CCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----cCC-CceE--EEEec-CCEEEEEEcCCCC
Confidence            777777777        9999988899999999999999  43322     111 2233  36788 898888887764 


Q ss_pred             --cEEEEcCCc
Q 009380          484 --TVEVISPAQ  492 (536)
Q Consensus       484 --~I~v~d~~~  492 (536)
                        .|.+|+..+
T Consensus       305 p~~l~~~d~~~  315 (582)
T 3o4h_A          305 PPRIVSLPSGE  315 (582)
T ss_dssp             EEEEEEETTCC
T ss_pred             CCeEEEEcCCC
Confidence              477777654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=1.4e-19  Score=184.55  Aligned_cols=245  Identities=12%  Similarity=0.037  Sum_probs=165.3

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEeccccc---------C-------ccccccccCCceEEEEEEecC
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL---------K-------PENIARIMPGRITQMKFLPCS  246 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~---------~-------~~~~~~~~~~~I~~v~~~p~~  246 (536)
                      ...+..+.+++++.+++..          +.++ +.+|+...         .       .......+.+.|++++|+|  
T Consensus        36 ~~~~n~lavs~~~~~l~~~----------~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp--  102 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAG----------GASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC--  102 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEE----------ETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT--
T ss_pred             CCCccEEEEecCCCEEEEE----------CCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC--
Confidence            3457788888888877744          3333 55544210         0       0001122467899999999  


Q ss_pred             CccEEE----EEeCCCcEEEEECCCCC-----C--CCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          247 DVRMVV----AGSKLGNITFWNLDSQQ-----D--EDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~----tg~~dg~v~iwd~~~~~-----~--~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      ++++|+    +|+.|+.|+|||+.+..     .  ....+..+.+|...|.+++|+|+++.+|++++.||+|++||++++
T Consensus       103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~  182 (434)
T 2oit_A          103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET  182 (434)
T ss_dssp             TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred             CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence            999999    78889999999986520     0  011245667799999999999985489999999999999999987


Q ss_pred             eEE-EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-------CCeEEEEEecCCCCEE-EEE
Q 009380          316 VFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-------ARINTIDFNPRNPNIM-ATS  386 (536)
Q Consensus       316 ~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-------~~i~~i~~~p~~~~~l-~s~  386 (536)
                      ... ....|...|.+++|+|++ ++|++|+.||.|++||++ ++....+..|.       ..|.+++|++++ .++ +.+
T Consensus       183 ~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~  259 (434)
T 2oit_A          183 VKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYA  259 (434)
T ss_dssp             EEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEE
T ss_pred             cceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc-eEEEEEc
Confidence            544 344578899999999998 899999999999999998 55555554332       379999999966 344 334


Q ss_pred             eCCCc------EEEEeCCCCCCCCCCcc-eee-------cccCceeEEEEccCCCeEEEEeC-CCcEEEEeC
Q 009380          387 STDGT------ACIWDLRSMATDKPEPM-KVL-------SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSG  443 (536)
Q Consensus       387 s~dg~------i~iwdl~~~~~~~~~~~-~~~-------~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~  443 (536)
                      +.||.      +++||+++.+....... ...       ..+.+...+.+-++.+++++++. .+.|.|+..
T Consensus       260 ~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          260 AADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             ETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             cCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence            44533      89999987532111111 111       12222233444467676666654 444666653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=3.4e-19  Score=177.32  Aligned_cols=273  Identities=11%  Similarity=0.068  Sum_probs=177.5

Q ss_pred             ccccceEEecccccCcc---ccccccCCceEEEEEEecCCccEEEEEeCC----CcEEEEECCCCCCCCCceEEeccCCC
Q 009380          211 IEVGSCVDIGSLTLKPE---NIARIMPGRITQMKFLPCSDVRMVVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLG  283 (536)
Q Consensus       211 ~~~dg~v~lw~~~~~~~---~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~  283 (536)
                      .+.++.|.+|.++....   .+...+...+..++|+|  ++++|++++.+    +.|.+|++.........+.....+..
T Consensus        23 ~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~sp--dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~  100 (361)
T 3scy_A           23 SGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSA--DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA  100 (361)
T ss_dssp             SSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECT--TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred             CCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECC--CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence            34567889998754321   11122667788899999  99999998875    79999998753111233444445666


Q ss_pred             CEEEEEEecCCCCEEEEEE-CCCeEEEEECCCC-eEE---EeecC-----------CCceeEEEecCCCCCEEEEEE-CC
Q 009380          284 PISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKE-VFD---LVYSS-----------EYAVFSLSQQPNNVNTLYFGE-GQ  346 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~-~~~---~~~~~-----------~~~i~~l~~~~~~~~~l~~g~-~d  346 (536)
                      ....+++  ++ ++|++++ .++.|.+|++... ...   ....+           ...+.+++|+|++ +++++++ .+
T Consensus       101 ~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~  176 (361)
T 3scy_A          101 DPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG-KYLLADDLGT  176 (361)
T ss_dssp             CEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS-SEEEEEETTT
T ss_pred             CcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC-CEEEEEeCCC
Confidence            7778888  66 7777766 5889999999743 211   11111           2235789999998 6555554 57


Q ss_pred             CeEEEEECCCCcc------c------ee-EeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCCCCcceee-
Q 009380          347 GGLNIWDVRSRKS------A------TE-WLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDKPEPMKVL-  411 (536)
Q Consensus       347 g~i~i~d~~~~~~------~------~~-~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~~~~~~~~-  411 (536)
                      +.|.+|++.....      +      .. ...+...+..++|+|++ +++++++ .++.|.+||+.++..  ....... 
T Consensus       177 ~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~--~~~~~~~~  253 (361)
T 3scy_A          177 DQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGML--DEIQTVAA  253 (361)
T ss_dssp             TEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEE--EEEEEEES
T ss_pred             CEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCce--EEeEEEec
Confidence            8999999875432      1      11 12345668899999998 4555555 689999999985421  0111111 


Q ss_pred             --cccCceeEEEEccCCCeEEEEeCC--CcEEEEeCC--CCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCc
Q 009380          412 --SHKRAVHSAYFSPSGSSLATTSFD--DTIGIWSGV--NFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRT  484 (536)
Q Consensus       412 --~~~~~v~~l~~sp~g~~l~t~s~d--g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~  484 (536)
                        .+......++|+|+|++|+++..+  +.|.+|++.  +++.........  +....  .++|+|+|++|++++ .++.
T Consensus       254 ~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~--~~~~spdg~~l~~~~~~~~~  329 (361)
T 3scy_A          254 DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPR--NFIITPNGKYLLVACRDTNV  329 (361)
T ss_dssp             CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCC--EEEECTTSCEEEEEETTTTE
T ss_pred             CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCc--eEEECCCCCEEEEEECCCCC
Confidence              233456899999999988777654  889999986  333211111111  22222  377999999988887 5688


Q ss_pred             EEEE--cCCccccc
Q 009380          485 VEVI--SPAQRRSV  496 (536)
Q Consensus       485 I~v~--d~~~~~~~  496 (536)
                      |.+|  |..+++..
T Consensus       330 v~v~~~d~~~g~~~  343 (361)
T 3scy_A          330 IQIFERDQATGLLT  343 (361)
T ss_dssp             EEEEEECTTTCCEE
T ss_pred             EEEEEEECCCCcEe
Confidence            9996  55566543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1.5e-19  Score=178.45  Aligned_cols=282  Identities=11%  Similarity=0.093  Sum_probs=186.6

Q ss_pred             eecCCCCcccccccccccccccccccceEEecccccCccccccccCC--ceEEEEEEecCCccEE-EEEeCCCcEEEEEC
Q 009380          189 CKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPG--RITQMKFLPCSDVRMV-VAGSKLGNITFWNL  265 (536)
Q Consensus       189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~--~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~  265 (536)
                      +.+++++.+++          ....++.|.+||..............  .+..++|+|  +++++ +++..++.|.+||+
T Consensus         5 ~~~~~~~~~~v----------~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~i~~~d~   72 (349)
T 1jmx_B            5 PALKAGHEYMI----------VTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDL   72 (349)
T ss_dssp             CCCCTTCEEEE----------EEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEET
T ss_pred             ccccCCCEEEE----------EeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC--CCCEEEEEeCCCCcEEEEeC
Confidence            34555666655          34667899999975432211111223  688999999  88755 45567899999999


Q ss_pred             CCCCCCCCceEEeccCC------CCEEEEEEecCCCCEEEEEECC------------CeEEEEECCCCe---EEEeecCC
Q 009380          266 DSQQDEDNGIYLFRTHL------GPISGIVTQQYCLSKIFTSCYD------------GLIRLMDAEKEV---FDLVYSSE  324 (536)
Q Consensus       266 ~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~~l~s~s~d------------g~I~vwd~~~~~---~~~~~~~~  324 (536)
                      .+    ...+..+..+.      ..+.+++|+|++ ++|++++.+            +.|.+||+.++.   ......+.
T Consensus        73 ~t----~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  147 (349)
T 1jmx_B           73 DT----CKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  147 (349)
T ss_dssp             TT----TEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             CC----CcEEEEEEcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence            87    45555554322      237889999999 888888865            999999998743   23344455


Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC------------------------CeEEEEEecCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA------------------------RINTIDFNPRNP  380 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~------------------------~i~~i~~~p~~~  380 (536)
                      ..+.+++|+|++ + +++++  +.|.+||+.+++.+..+..+..                        ...++++++++.
T Consensus       148 ~~~~~~~~s~dg-~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  223 (349)
T 1jmx_B          148 RQVYLMRAADDG-S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  223 (349)
T ss_dssp             SSCCCEEECTTS-C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             CcccceeECCCC-c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence            678999999998 5 55543  3599999999887766653320                        234466665431


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG  459 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  459 (536)
                      ...........+..+|+.+++   ........+...+.+++|+| +|++++++  ++.|.+||+.+++....+.....  
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~--  296 (349)
T 1jmx_B          224 QDPATADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT--  296 (349)
T ss_dssp             ---CCCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC--
T ss_pred             CCccccccceeEEEEeccCCc---EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC--
Confidence            110000001112224444432   11122223556788999999 99999888  88999999998877666643221  


Q ss_pred             ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                        .  ..++|+++|++|++++.++.|.+||..+++.+..+..+
T Consensus       297 --~--~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          297 --Y--YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             --C--CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             --c--cceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence              1  23779999999998888999999999999888777643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=1.4e-19  Score=178.64  Aligned_cols=236  Identities=11%  Similarity=0.052  Sum_probs=172.5

Q ss_pred             EEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEE-EEEECCCeEEEEECCCCccceeE
Q 009380          287 GIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTL-YFGEGQGGLNIWDVRSRKSATEW  363 (536)
Q Consensus       287 ~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l-~~g~~dg~i~i~d~~~~~~~~~~  363 (536)
                      .+++++++ .++++++.++.|.+||+.+++.........  .+..++|+|++ +.+ +++..++.|.+||+.+++.+..+
T Consensus         4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN-RTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCC-CEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            34567776 889999999999999999988776665444  68899999998 555 45557899999999998887776


Q ss_pred             eccC------CCeEEEEEecCCCCEEEEEeCC------------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC
Q 009380          364 LLHE------ARINTIDFNPRNPNIMATSSTD------------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS  425 (536)
Q Consensus       364 ~~h~------~~i~~i~~~p~~~~~l~s~s~d------------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~  425 (536)
                      ..+.      ..+.+++|+|++ ++|++++.+            +.|.+||+.+++.  ........+...+.+++|+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~s~d  158 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--AKPVRTFPMPRQVYLMRAADD  158 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--BCCSEEEECCSSCCCEEECTT
T ss_pred             EcccccccccccccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccc--cceeeeccCCCcccceeECCC
Confidence            6332      237889999988 567777654            8999999987431  122333445557899999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC-------------------Ccee------------------------
Q 009380          426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT-------------------GRWI------------------------  462 (536)
Q Consensus       426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-------------------~~~~------------------------  462 (536)
                      |+ +++++.  .|.+||+.+++....+......                   ....                        
T Consensus       159 g~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  235 (349)
T 1jmx_B          159 GS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY  235 (349)
T ss_dssp             SC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred             Cc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence            99 665543  4999999888766555322100                   0000                        


Q ss_pred             --------------------eeeEEEEcC-CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEE
Q 009380          463 --------------------SSFRAIWGW-DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL  521 (536)
Q Consensus       463 --------------------~~~~~~~s~-~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l  521 (536)
                                          ....++|+| ++++++++  ++.|.+||+.+++.+..+..++.   ...++|+| ++.+|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~-dg~~l  309 (349)
T 1jmx_B          236 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHT---YYCVAFDK-KGDKL  309 (349)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSC---CCEEEECS-SSSCE
T ss_pred             EEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCC---ccceEECC-CCCEE
Confidence                                122356789 99999888  88999999999988777764332   23578888 56788


Q ss_pred             EEEccCCeEEEEecC
Q 009380          522 AGATGGGQVYVWTSD  536 (536)
Q Consensus       522 asgs~Dg~v~iW~~d  536 (536)
                      ++++.++.|.+||++
T Consensus       310 ~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          310 YLGGTFNDLAVFNPD  324 (349)
T ss_dssp             EEESBSSEEEEEETT
T ss_pred             EEecCCCeEEEEecc
Confidence            888899999999974

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.84  E-value=1.4e-19  Score=180.47  Aligned_cols=276  Identities=12%  Similarity=0.027  Sum_probs=179.0

Q ss_pred             EEEEEeCC--CcEEEEECCCCCCCCCc--eEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC-CCeEEEeecC
Q 009380          250 MVVAGSKL--GNITFWNLDSQQDEDNG--IYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE-KEVFDLVYSS  323 (536)
Q Consensus       250 ~l~tg~~d--g~v~iwd~~~~~~~~~~--~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~-~~~~~~~~~~  323 (536)
                      .|++|+..  +.|.+|+++...  +..  +.... .+...+..++|+|++ ++|++++.+ .|.+|++. ++.......+
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~--g~l~~~~~~~~~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~   79 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEK--LTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASH   79 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTT--TEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEccCCCcEEEEEEECCC--CCEEEeeEEccCCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEe
Confidence            45666653  568888775321  221  21211 234568899999999 899999988 99999997 7765543322


Q ss_pred             --CCceeEEEecCCCCCE--EEEEE-------------CCCeEEEEECC-CCccceeEe----ccCCCeEEEEEecCCCC
Q 009380          324 --EYAVFSLSQQPNNVNT--LYFGE-------------GQGGLNIWDVR-SRKSATEWL----LHEARINTIDFNPRNPN  381 (536)
Q Consensus       324 --~~~i~~l~~~~~~~~~--l~~g~-------------~dg~i~i~d~~-~~~~~~~~~----~h~~~i~~i~~~p~~~~  381 (536)
                        .+.+.+++|+|++ +.  ++++.             .+|.+.+|++. .++....+.    .+...+.+++|+|+| +
T Consensus        80 ~~~g~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~  157 (365)
T 1jof_A           80 PIGGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-T  157 (365)
T ss_dssp             ECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-S
T ss_pred             ecCCCCccEEECCCC-CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-C
Confidence              2346679999998 53  44442             68999999997 465544443    245789999999998 5


Q ss_pred             EEEEEe-CCCcEEEEeCC-CCCCCCCCcceee---cccCceeEEEEccCCCeEEEEeC-CCcEEEEeCC--CCCcce---
Q 009380          382 IMATSS-TDGTACIWDLR-SMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGV--NFENTS---  450 (536)
Q Consensus       382 ~l~s~s-~dg~i~iwdl~-~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~--~~~~~~---  450 (536)
                      ++++++ .++.|++||+. +++   .......   .|...+.+++|+|+|++|++++. ++.|.+|++.  +++...   
T Consensus       158 ~l~~~~~~~~~v~~~~~~~~g~---~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~  234 (365)
T 1jof_A          158 YLYSADLTANKLWTHRKLASGE---VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH  234 (365)
T ss_dssp             EEEEEETTTTEEEEEEECTTSC---EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCC---EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc
Confidence            566554 46799999998 542   1111111   24567899999999999888775 6889999765  444321   


Q ss_pred             EEeccCC--CCce------eeeeEEE-EcCCCCEEEEEcCCC------cEEEEcCC-ccccce---eccCCceeeeeeeE
Q 009380          451 MIHHNNQ--TGRW------ISSFRAI-WGWDDSCVFIGNMTR------TVEVISPA-QRRSVA---TLQSPYISAIPCRF  511 (536)
Q Consensus       451 ~~~~~~~--~~~~------~~~~~~~-~s~~g~~l~~gs~dg------~I~v~d~~-~~~~~~---~l~~~~~~~~~~~~  511 (536)
                      .+.....  .+..      .....++ |+|||++|++++.+.      .|.+|++. +++...   .+..+...  ...+
T Consensus       235 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~--~~~~  312 (365)
T 1jof_A          235 SFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG--GHSN  312 (365)
T ss_dssp             EEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC--TTCC
T ss_pred             eEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCC--cccc
Confidence            1211110  1110      0233478 999999988776432      79999986 554332   12212111  2346


Q ss_pred             eecCC--CCCEEEEEcc-CCeEEEEecC
Q 009380          512 HAHPH--QVGTLAGATG-GGQVYVWTSD  536 (536)
Q Consensus       512 ~~~p~--~~~~lasgs~-Dg~v~iW~~d  536 (536)
                      +++|.  ++.+|++++. ++.|.||+++
T Consensus       313 a~sp~~~dg~~l~v~~~~~~~v~v~~~~  340 (365)
T 1jof_A          313 AVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             eecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence            77785  5789998886 4899999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=1.3e-19  Score=197.52  Aligned_cols=312  Identities=10%  Similarity=-0.025  Sum_probs=199.6

Q ss_pred             eeecCCCCcccccccccccccccccccceEEecccccCccccc-cccCC---ceEEEEEEecCCccEEEEEeC-------
Q 009380          188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIMPG---RITQMKFLPCSDVRMVVAGSK-------  256 (536)
Q Consensus       188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~~~---~I~~v~~~p~~~~~~l~tg~~-------  256 (536)
                      .+.|+|||.+++.           +.++.|.+|++........ ..|..   .|.+++|||  ||++|++++.       
T Consensus        20 ~~~~s~dg~~~~~-----------~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~   86 (719)
T 1z68_A           20 FPNWISGQEYLHQ-----------SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRY   86 (719)
T ss_dssp             CCEESSSSEEEEE-----------CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSS
T ss_pred             ccEECCCCeEEEE-----------cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEe
Confidence            6788899965542           2478999999865443322 23322   499999999  9999998876       


Q ss_pred             --CCcEEEEECCCCCCCCCce--EEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec--CCCce---
Q 009380          257 --LGNITFWNLDSQQDEDNGI--YLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS--SEYAV---  327 (536)
Q Consensus       257 --dg~v~iwd~~~~~~~~~~~--~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~--~~~~i---  327 (536)
                        ++.|++||+.++    ..+  ..+   ...+..++|+|+| +.|+++. ++.|++||+.++....+..  +...|   
T Consensus        87 s~~~~i~~~d~~~g----~~~~~~~l---~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g  157 (719)
T 1z68_A           87 SYTATYYIYDLSNG----EFVRGNEL---PRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG  157 (719)
T ss_dssp             CEEEEEEEEETTTT----EECCSSCC---CSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred             ecceEEEEEECCCC----ccccceec---CcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence              789999999863    221  112   2568899999999 8888876 8899999998876654432  22212   


Q ss_pred             --------------eEEEecCCCCCEEEEEECCC----------------------------------eEEEEECCCCcc
Q 009380          328 --------------FSLSQQPNNVNTLYFGEGQG----------------------------------GLNIWDVRSRKS  359 (536)
Q Consensus       328 --------------~~l~~~~~~~~~l~~g~~dg----------------------------------~i~i~d~~~~~~  359 (536)
                                    .+++|+|++ +.|++++.|.                                  .|++||+.+++.
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~  236 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAY  236 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHH
T ss_pred             cccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCc
Confidence                          489999999 7888776542                                  789999998765


Q ss_pred             c--------eeEeccCCCeEEEEEecCCCCEEEEEeCC----CcEEEEe----CCCCCCCCCCcce--eecccCcee---
Q 009380          360 A--------TEWLLHEARINTIDFNPRNPNIMATSSTD----GTACIWD----LRSMATDKPEPMK--VLSHKRAVH---  418 (536)
Q Consensus       360 ~--------~~~~~h~~~i~~i~~~p~~~~~l~s~s~d----g~i~iwd----l~~~~~~~~~~~~--~~~~~~~v~---  418 (536)
                      .        ..+..|...+.+++|+|++ .++++....    ..|.+||    +.+++..  ....  ...|...+.   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~  313 (719)
T 1z68_A          237 VGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCP--KTQEHIEESRTGWAGGFF  313 (719)
T ss_dssp             HCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECC--GGGEEEEECSSSCSSSSS
T ss_pred             cceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceE--EEEecccccCCceEcccc
Confidence            3        2233577889999999986 677664432    2488899    7665311  1111  135666676   


Q ss_pred             --EEEEccCCCeEEE--EeCCC--cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEE
Q 009380          419 --SAYFSPSGSSLAT--TSFDD--TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEV  487 (536)
Q Consensus       419 --~l~~sp~g~~l~t--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v  487 (536)
                        .+.|+|+|+.|+.  +..+|  .|.+||+.+++ ...+....  . .+.  .+.++ +++.|+..+.+     +.+++
T Consensus       314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~--~-~v~--~~~~~-d~~~i~~~~~~~~~~~~~~~l  386 (719)
T 1z68_A          314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK--W-EAI--NIFRV-TQDSLFYSSNEFEEYPGRRNI  386 (719)
T ss_dssp             CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS--S-CEE--EEEEE-CSSEEEEEESCGGGCTTCBEE
T ss_pred             CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc--e-EEE--EEEEE-eCCEEEEEEecCCCCCceEEE
Confidence              8999999996654  44555  57778876655 23332111  1 122  23344 67666655544     77888


Q ss_pred             EcCCc--cc-cceeccC----CceeeeeeeEeecCCCCCEEE-EEccC--CeEEEEec
Q 009380          488 ISPAQ--RR-SVATLQS----PYISAIPCRFHAHPHQVGTLA-GATGG--GQVYVWTS  535 (536)
Q Consensus       488 ~d~~~--~~-~~~~l~~----~~~~~~~~~~~~~p~~~~~la-sgs~D--g~v~iW~~  535 (536)
                      |.+..  +. ....+..    +....  ..+.|+| ++.+|+ +++.+  ..+.+|++
T Consensus       387 ~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~  441 (719)
T 1z68_A          387 YRISIGSYPPSKKCVTCHLRKERCQY--YTASFSD-YAKYYALVCYGPGIPISTLHDG  441 (719)
T ss_dssp             EEEECSSSSCCEEESSTTTTTTTBCB--EEEEECG-GGSSEEEEECCBSSCEEEEECS
T ss_pred             EEEeCCCCCCCceeccCccCCCCCce--EEEEECC-CCCEEEEEcCCCCCCeEEEEEC
Confidence            87653  32 1223321    21222  3467777 445555 44443  46777775

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=1.3e-19  Score=197.43  Aligned_cols=281  Identities=11%  Similarity=0.078  Sum_probs=183.8

Q ss_pred             EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC---CEEEEEEecCCCCEEEEEEC---------CCe
Q 009380          239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG---PISGIVTQQYCLSKIFTSCY---------DGL  306 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~---------dg~  306 (536)
                      +++|+|  ++.++++ +.|++|++||+.+    +.....+..|..   .|.+++|+||| ++|++++.         ++.
T Consensus        20 ~~~~s~--dg~~~~~-~~d~~i~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~   91 (719)
T 1z68_A           20 FPNWIS--GQEYLHQ-SADNNIVLYNIET----GQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTAT   91 (719)
T ss_dssp             CCEESS--SSEEEEE-CTTSCEEEEESSS----CCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEE
T ss_pred             ccEECC--CCeEEEE-cCCCCEEEEEcCC----CcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceE
Confidence            789999  8865555 4699999999987    555555555543   48999999999 89988876         789


Q ss_pred             EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-eccCCCe---------------
Q 009380          307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEARI---------------  370 (536)
Q Consensus       307 I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i---------------  370 (536)
                      |++||+.++...........+.+++|+|+| +.|+++. ++.|++||+.+++..... .++...|               
T Consensus        92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~  169 (719)
T 1z68_A           92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA  169 (719)
T ss_dssp             EEEEETTTTEECCSSCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred             EEEEECCCCccccceecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence            999999998772111223568999999999 6777765 679999999887764322 2332222               


Q ss_pred             --EEEEEecCCCCEEEEEeCCC----------------------------------cEEEEeCCCCCCC----CCCccee
Q 009380          371 --NTIDFNPRNPNIMATSSTDG----------------------------------TACIWDLRSMATD----KPEPMKV  410 (536)
Q Consensus       371 --~~i~~~p~~~~~l~s~s~dg----------------------------------~i~iwdl~~~~~~----~~~~~~~  410 (536)
                        .+++|+||| +.|++++.|.                                  .|++||+.+++..    ...+..+
T Consensus       170 ~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  248 (719)
T 1z68_A          170 TKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI  248 (719)
T ss_dssp             SSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred             CcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence              489999998 6787776542                                  7889999875310    0000112


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCC----cEEEEe----CCCCCcceEEe-ccCCCCceee---eeEEEEcCCCCEEEE
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDD----TIGIWS----GVNFENTSMIH-HNNQTGRWIS---SFRAIWGWDDSCVFI  478 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg----~I~iwd----~~~~~~~~~~~-~~~~~~~~~~---~~~~~~s~~g~~l~~  478 (536)
                      ..|...+.+++|+||++++++....+    .|.+||    +.+++....+. .......++.   ...+.|+|||+.|+.
T Consensus       249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence            35788899999999987776644322    488899    77665544431 0001111222   013679999996554


Q ss_pred             --EcCCC--cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEcc-----CCeEEEEec
Q 009380          479 --GNMTR--TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-----GGQVYVWTS  535 (536)
Q Consensus       479 --gs~dg--~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-----Dg~v~iW~~  535 (536)
                        +..++  .|.+|++.+++ ...+..+.....  .+.+.  ++..|+..+.     ++.++||.+
T Consensus       329 ~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~--~~~~~--d~~~i~~~~~~~~~~~~~~~l~~~  389 (719)
T 1z68_A          329 IFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAI--NIFRV--TQDSLFYSSNEFEEYPGRRNIYRI  389 (719)
T ss_dssp             EEECTTSCEEEEEESSCSTT-CEECSCSSSCEE--EEEEE--CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             EEEccCCceEEEEEECCCCc-eEecccCceEEE--EEEEE--eCCEEEEEEecCCCCCceEEEEEE
Confidence              44444  57778887765 444544332222  22223  3455555544     488899875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.81  E-value=6e-18  Score=169.78  Aligned_cols=278  Identities=14%  Similarity=0.052  Sum_probs=183.6

Q ss_pred             EEEEecCCccEEEEEeC-CC--cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          240 MKFLPCSDVRMVVAGSK-LG--NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~-dg--~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      .+|+|  ||++|+.++. +|  .|.+||+.+    +.......+|...+..+.|+|++ +.|+.++.++.|++||+.++.
T Consensus        41 ~~~Sp--Dg~~l~~~~~~~g~~~l~~~d~~~----g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTR--DGSKLLFGGAFDGPWNYYLLDLNT----QVATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCT--TSCEEEEEECTTSSCEEEEEETTT----CEEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCC
T ss_pred             ccCCC--CCCEEEEEEcCCCCceEEEEeCCC----CceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCc
Confidence            78999  9999998887 66  488888876    44555555666566577899999 999999999999999999987


Q ss_pred             EEEeecCC-CceeEEE--ecCCCCCEEEEE----------------------ECCCeEEEEECCCCccceeEeccCCCeE
Q 009380          317 FDLVYSSE-YAVFSLS--QQPNNVNTLYFG----------------------EGQGGLNIWDVRSRKSATEWLLHEARIN  371 (536)
Q Consensus       317 ~~~~~~~~-~~i~~l~--~~~~~~~~l~~g----------------------~~dg~i~i~d~~~~~~~~~~~~h~~~i~  371 (536)
                      ...+.... ..+....  +++++ ..++..                      ..++.|.+||+.+++. ..+..+...+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~  191 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLG  191 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEE
T ss_pred             ceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCcccc
Confidence            76655433 3343333  47887 566532                      2346899999998864 44445777899


Q ss_pred             EEEEec-CCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeeccc--CceeEEEEccCCCeEEEEeC-CC----c
Q 009380          372 TIDFNP-RNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHK--RAVHSAYFSPSGSSLATTSF-DD----T  437 (536)
Q Consensus       372 ~i~~~p-~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~--~~v~~l~~sp~g~~l~t~s~-dg----~  437 (536)
                      .+.|+| ++ ..|+.++.+      ..|.++|+....     ...+..+.  ..+..+.|+|+|+.|+..+. ++    .
T Consensus       192 ~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  265 (388)
T 3pe7_A          192 HPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN-----MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF  265 (388)
T ss_dssp             EEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC-----CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred             ccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc-----eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence            999999 88 566655543      378888876532     22333333  35788999999998766543 22    3


Q ss_pred             EEEEeCCCCCcceEEeccCCCCceee-eeEEEEcCCCCEEEEE---------cCCCcEEEEcCCccccceeccCCceee-
Q 009380          438 IGIWSGVNFENTSMIHHNNQTGRWIS-SFRAIWGWDDSCVFIG---------NMTRTVEVISPAQRRSVATLQSPYISA-  506 (536)
Q Consensus       438 I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~l~~g---------s~dg~I~v~d~~~~~~~~~l~~~~~~~-  506 (536)
                      |.+||+.+++......... ...... .-...|+|||+.|+..         ..+..|++||+.+++. ..+..+.... 
T Consensus       266 l~~~d~~~g~~~~l~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~  343 (388)
T 3pe7_A          266 IYSADPETLENRQLTSMPA-CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWK  343 (388)
T ss_dssp             EEEECTTTCCEEEEEEECC-EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCC
T ss_pred             EEEEecCCCceEEEEcCCC-ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccc
Confidence            9999998876543322211 000000 0013589999987754         4456899999998754 3444332200 


Q ss_pred             --------eeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380          507 --------IPCRFHAHPHQVGTLAGAT-GGGQVYVWTS  535 (536)
Q Consensus       507 --------~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~  535 (536)
                              ....++|+| ++..|+.++ .+|...||.+
T Consensus       344 ~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          344 VFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             ccccccccCCCCccCCC-CCCEEEEEecCCCceeEEEE
Confidence                    124568888 567666554 6787778765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=1.8e-17  Score=181.05  Aligned_cols=247  Identities=10%  Similarity=0.069  Sum_probs=171.9

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC-----EEEEEEecCCCCEEEEEECC-----
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP-----ISGIVTQQYCLSKIFTSCYD-----  304 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~d-----  304 (536)
                      ....++.|+|  ++.+|+++  ||+|++||+.+    +.....+.+|...     ...+.|+||+ ++|+.++.+     
T Consensus        17 ~~~~~~~w~~--dg~~~~~~--~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           17 LKLYSLRWIS--DHEYLYKQ--ENNILVFNAEY----GNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCCEEECS--SSEEEEEE--TTEEEEEETTT----CCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSS
T ss_pred             ccccccEECC--CCcEEEEc--CCcEEEEECCC----CceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEE
Confidence            3467899999  99988886  89999999998    5556667776543     2447899999 888888876     


Q ss_pred             ----CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCe---------
Q 009380          305 ----GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARI---------  370 (536)
Q Consensus       305 ----g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i---------  370 (536)
                          +.+.+||+.+++...+..+...+...+|+|+| +.|+.+. ++.|++||+.+++..+. ..++...+         
T Consensus        88 ~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             SCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EccceEEEEEECCCCcEEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence                56779999999988777778889999999999 6666664 67999999988765332 12332222         


Q ss_pred             --------EEEEEecCCCCEEEEEeCCC------------------------------------cEEEEeCCC---CCCC
Q 009380          371 --------NTIDFNPRNPNIMATSSTDG------------------------------------TACIWDLRS---MATD  403 (536)
Q Consensus       371 --------~~i~~~p~~~~~l~s~s~dg------------------------------------~i~iwdl~~---~~~~  403 (536)
                              ..+.|+||| +.||.++.|.                                    .|++||+.+   ++..
T Consensus       166 ~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~  244 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA  244 (740)
T ss_dssp             HHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC
T ss_pred             cchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc
Confidence                    358999998 5677664321                                    477888877   5210


Q ss_pred             CCCcceee------cccCceeEEEEccCCCeEEEEeC----CCcEEEEeCCCCC----c--ceEEeccCCCCceee---e
Q 009380          404 KPEPMKVL------SHKRAVHSAYFSPSGSSLATTSF----DDTIGIWSGVNFE----N--TSMIHHNNQTGRWIS---S  464 (536)
Q Consensus       404 ~~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~----dg~I~iwd~~~~~----~--~~~~~~~~~~~~~~~---~  464 (536)
                        ....+.      +|...+..++|+|||+.++....    +..|.+||+.+++    +  ...+... ....++.   .
T Consensus       245 --~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~-~~~~~v~~~~~  321 (740)
T 4a5s_A          245 --TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM-STTGWVGRFRP  321 (740)
T ss_dssp             --CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE-CSSSCSSSSSC
T ss_pred             --eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec-cCCceEccCcC
Confidence              122222      37778999999999996665543    3369999998876    1  2222111 1122222   1


Q ss_pred             eEEEEcCCCCEEE-EEcC-C--CcEEEEcCCccccc
Q 009380          465 FRAIWGWDDSCVF-IGNM-T--RTVEVISPAQRRSV  496 (536)
Q Consensus       465 ~~~~~s~~g~~l~-~gs~-d--g~I~v~d~~~~~~~  496 (536)
                      ..+.|+|||+.|+ ..+. +  ..|.+|+..+++..
T Consensus       322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            2367999999876 5543 3  46888998877544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.79  E-value=2.4e-17  Score=179.97  Aligned_cols=243  Identities=9%  Similarity=-0.020  Sum_probs=166.0

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCcc-ccccccCC-----ceEEEEEEecCCccEEEEEeCC
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-NIARIMPG-----RITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-~~~~~~~~-----~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      .....+.|+|||.+++.          .  +|.|.+|++..... .+...|..     ....+.|||  ||++|+.++.+
T Consensus        17 ~~~~~~~w~~dg~~~~~----------~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp--dg~~l~~~~~~   82 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYK----------Q--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNY   82 (740)
T ss_dssp             CCCCCEEECSSSEEEEE----------E--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT--TSSEEEEEEEE
T ss_pred             ccccccEECCCCcEEEE----------c--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC--CCCEEEEEECC
Confidence            34568899999987762          1  67899999865443 33344432     234588999  99999998876


Q ss_pred             ---------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec--CCCc
Q 009380          258 ---------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS--SEYA  326 (536)
Q Consensus       258 ---------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~--~~~~  326 (536)
                               +.+.+||+.++     ....+..|...+...+|+||| +.|+.++ |+.|++||+.++....+..  +...
T Consensus        83 ~~~~r~~~~~~~~~~d~~~~-----~~~~l~~~~~~~~~~~~SPdG-~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~  155 (740)
T 4a5s_A           83 VKQWRHSYTASYDIYDLNKR-----QLITEERIPNNTQWVTWSPVG-HKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI  155 (740)
T ss_dssp             EECSSSCEEEEEEEEETTTT-----EECCSSCCCTTEEEEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT
T ss_pred             eeeEEEccceEEEEEECCCC-----cEEEcccCCCcceeeEECCCC-CEEEEEE-CCeEEEEECCCCceEEEcCCCCccc
Confidence                     56779999863     234466778889999999999 8888774 7899999998876554432  1121


Q ss_pred             e-----------------eEEEecCCCCCEEEEEECC-C-----------------------------------eEEEEE
Q 009380          327 V-----------------FSLSQQPNNVNTLYFGEGQ-G-----------------------------------GLNIWD  353 (536)
Q Consensus       327 i-----------------~~l~~~~~~~~~l~~g~~d-g-----------------------------------~i~i~d  353 (536)
                      +                 ..+.|+|+| +.|+.+..| +                                   .|.+||
T Consensus       156 ~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d  234 (740)
T 4a5s_A          156 IYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVN  234 (740)
T ss_dssp             EEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             eecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEE
Confidence            2                 358999999 677766422 1                                   588899


Q ss_pred             CCC---Ccc--ceeEe------ccCCCeEEEEEecCCCCEEEEEeC----CCcEEEEeCCCCC----CCCCCcceeeccc
Q 009380          354 VRS---RKS--ATEWL------LHEARINTIDFNPRNPNIMATSST----DGTACIWDLRSMA----TDKPEPMKVLSHK  414 (536)
Q Consensus       354 ~~~---~~~--~~~~~------~h~~~i~~i~~~p~~~~~l~s~s~----dg~i~iwdl~~~~----~~~~~~~~~~~~~  414 (536)
                      +.+   ++.  ...+.      +|...+..++|+|++ ++++....    +..|.+||+.+++    +.....+....|.
T Consensus       235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~  313 (740)
T 4a5s_A          235 TDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT  313 (740)
T ss_dssp             TTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred             CCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence            988   742  23333      277789999999998 45554432    3469999998864    1111111123466


Q ss_pred             Ccee-----EEEEccCCCeEE-EEe-CCC--cEEEEeCCCCCcc
Q 009380          415 RAVH-----SAYFSPSGSSLA-TTS-FDD--TIGIWSGVNFENT  449 (536)
Q Consensus       415 ~~v~-----~l~~sp~g~~l~-t~s-~dg--~I~iwd~~~~~~~  449 (536)
                      ..|.     .+.|+|||+.|+ ..+ .+|  .|.+||+.++...
T Consensus       314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence            5554     789999999877 555 333  5888898765443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=2.9e-17  Score=164.72  Aligned_cols=282  Identities=9%  Similarity=-0.006  Sum_probs=181.3

Q ss_pred             eecCCCCcccccccccccccccccccc--eEEecccccCc-cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380          189 CKDEGLGVGSCDLIKGVVKTEKIEVGS--CVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL  265 (536)
Q Consensus       189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg--~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~  265 (536)
                      +.|+|||+.++...         ..+|  .|.+|++.... ..+...+...+..+.|+|  |++.|+.++.++.|++||+
T Consensus        41 ~~~SpDg~~l~~~~---------~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~~d~  109 (388)
T 3pe7_A           41 KCFTRDGSKLLFGG---------AFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP--DDDALFYVKDGRNLMRVDL  109 (388)
T ss_dssp             CCBCTTSCEEEEEE---------CTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT--TSSEEEEEETTTEEEEEET
T ss_pred             ccCCCCCCEEEEEE---------cCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC--CCCEEEEEeCCCeEEEEEC
Confidence            88999999998662         2234  46666764432 223344455556788999  9999999999999999999


Q ss_pred             CCCCCCCCceEEeccCCCCEEEEE--EecCCCCEEEEE----------------------ECCCeEEEEECCCCeEEEee
Q 009380          266 DSQQDEDNGIYLFRTHLGPISGIV--TQQYCLSKIFTS----------------------CYDGLIRLMDAEKEVFDLVY  321 (536)
Q Consensus       266 ~~~~~~~~~~~~~~~h~~~V~~l~--~~~~~~~~l~s~----------------------s~dg~I~vwd~~~~~~~~~~  321 (536)
                      .+    +.....+..+...+....  +++++ .+++..                      ..+..|.+||+.++....+.
T Consensus       110 ~~----g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~  184 (388)
T 3pe7_A          110 AT----LEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL  184 (388)
T ss_dssp             TT----CCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred             CC----CcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence            97    455555555655554444  47887 777643                      24578999999999888887


Q ss_pred             cCCCceeEEEecC-CCCCEEEEEECC------CeEEEEECCCCccceeEeccC--CCeEEEEEecCCCCEEEEEeCCC--
Q 009380          322 SSEYAVFSLSQQP-NNVNTLYFGEGQ------GGLNIWDVRSRKSATEWLLHE--ARINTIDFNPRNPNIMATSSTDG--  390 (536)
Q Consensus       322 ~~~~~i~~l~~~~-~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h~--~~i~~i~~~p~~~~~l~s~s~dg--  390 (536)
                      .+...+..++|+| ++ ..|+....+      ..|.++|+..+.. ..+..+.  ..+..+.|+|+|..+++++..++  
T Consensus       185 ~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~  262 (388)
T 3pe7_A          185 QENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP  262 (388)
T ss_dssp             EESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred             cCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence            7888899999999 87 666666543      3788888765543 3343343  35788999999865544444332  


Q ss_pred             --cEEEEeCCCCCCCCCCcceeecccC---ceeEEEEccCCCeEEEE---------eCCCcEEEEeCCCCCcceEEeccC
Q 009380          391 --TACIWDLRSMATDKPEPMKVLSHKR---AVHSAYFSPSGSSLATT---------SFDDTIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       391 --~i~iwdl~~~~~~~~~~~~~~~~~~---~v~~l~~sp~g~~l~t~---------s~dg~I~iwd~~~~~~~~~~~~~~  456 (536)
                        .|++||+.+++.  ..+.....+..   ....+.|+|+|+.|+..         ..+..|++||+.+++......+..
T Consensus       263 ~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~  340 (388)
T 3pe7_A          263 DRFIYSADPETLEN--RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDT  340 (388)
T ss_dssp             CEEEEEECTTTCCE--EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCC
T ss_pred             cceEEEEecCCCce--EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccC
Confidence              399999988641  01111111100   12224799999988754         445689999998876543333322


Q ss_pred             CCC-----ceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcC
Q 009380          457 QTG-----RWISSFRAIWGWDDSCVFIGN-MTRTVEVISP  490 (536)
Q Consensus       457 ~~~-----~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~  490 (536)
                      ...     .......++|+|||+.|+..+ .++...||.+
T Consensus       341 ~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          341 SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            000     000123367999999877655 4566556544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=1.6e-17  Score=165.57  Aligned_cols=243  Identities=9%  Similarity=0.029  Sum_probs=163.6

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECC-CCCCCCCceEEec--cCCCCEEEEEEecCCCCE--EEEEE-------
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLD-SQQDEDNGIYLFR--THLGPISGIVTQQYCLSK--IFTSC-------  302 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~-~~~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~--l~s~s-------  302 (536)
                      ..+..++|+|  ++++|++++.+ .|.+|++. +    +.......  .+ +.+.+++|+|++ ++  +++++       
T Consensus        40 ~~~~~~a~sp--dg~~l~~~~~~-~v~~~~~~~~----g~~~~~~~~~~~-g~~~~~~~spdg-~~l~~~~~~~~~~~~~  110 (365)
T 1jof_A           40 EPISWMTFDH--ERKNIYGAAMK-KWSSFAVKSP----TEIVHEASHPIG-GHPRANDADTNT-RAIFLLAAKQPPYAVY  110 (365)
T ss_dssp             CCCSEEEECT--TSSEEEEEEBT-EEEEEEEEET----TEEEEEEEEECC-SSGGGGCTTSCC-EEEEEEECSSTTCCEE
T ss_pred             CCCcEEEECC--CCCEEEEEccc-eEEEEEECCC----CCEEEeeEeecC-CCCccEEECCCC-CEEEEEEecCCcceec
Confidence            4688999999  99999998887 99999986 4    33332221  11 235668999998 63  45553       


Q ss_pred             ------CCCeEEEEECC-CCeEEEee-----cCCCceeEEEecCCCCCEEEEEEC-CCeEEEEECC-CCccc--eeEe--
Q 009380          303 ------YDGLIRLMDAE-KEVFDLVY-----SSEYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVR-SRKSA--TEWL--  364 (536)
Q Consensus       303 ------~dg~I~vwd~~-~~~~~~~~-----~~~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~-~~~~~--~~~~--  364 (536)
                            .+|.+.+|++. .+......     .+...+.+++|+|++ ++|+++.. ++.|.+||+. +++..  ..+.  
T Consensus       111 ~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~  189 (365)
T 1jof_A          111 ANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAP  189 (365)
T ss_dssp             EEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred             cceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence                  68999999997 45443222     245679999999998 67777654 6799999998 66642  2333  


Q ss_pred             ccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCC--CCCCC-CCcceee-----cccC------ceeEEE-EccCCCe
Q 009380          365 LHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRS--MATDK-PEPMKVL-----SHKR------AVHSAY-FSPSGSS  428 (536)
Q Consensus       365 ~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~--~~~~~-~~~~~~~-----~~~~------~v~~l~-~sp~g~~  428 (536)
                      .|...+..++|+|++ +++++++ .++.|.+|++..  ++... .......     +|..      .+..++ |+|+|++
T Consensus       190 ~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~  268 (365)
T 1jof_A          190 DPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             STTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred             CCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCE
Confidence            246679999999988 4666555 478999998753  21000 0001111     1222      588999 9999998


Q ss_pred             EEEEeCC-C-----cEEEEeCC-CCCcceE---EeccCCCCceeeeeEEEEcC---CCCEEEEEcCC-CcEEEEcCCcc
Q 009380          429 LATTSFD-D-----TIGIWSGV-NFENTSM---IHHNNQTGRWISSFRAIWGW---DDSCVFIGNMT-RTVEVISPAQR  493 (536)
Q Consensus       429 l~t~s~d-g-----~I~iwd~~-~~~~~~~---~~~~~~~~~~~~~~~~~~s~---~g~~l~~gs~d-g~I~v~d~~~~  493 (536)
                      |++++.+ +     .|.+|++. +++....   +.......   .  .++|+|   +|++|++++.+ +.|.+|++...
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---~--~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---H--SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---T--CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---c--cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            8877643 2     89999986 4443321   21111111   1  256889   89999999875 89999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.76  E-value=1.9e-17  Score=166.37  Aligned_cols=289  Identities=10%  Similarity=-0.052  Sum_probs=180.5

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCce-EEEEEEecCCccEEEEEeCCCcEEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRI-TQMKFLPCSDVRMVVAGSKLGNITF  262 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I-~~v~~~p~~~~~~l~tg~~dg~v~i  262 (536)
                      ..+..+.|+|||+.++.....       +.+..|.+|++..........+...+ ..+.|+|  +|++|+.++.++.|.+
T Consensus        36 ~~~~~~~~SpdG~~l~~~~~~-------~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp--dg~~l~~~~~~~~l~~  106 (396)
T 3c5m_A           36 NYFYQKCFTQDGKKLLFAGDF-------DGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST--DERAFFYVKNELNLMK  106 (396)
T ss_dssp             CCTTSCCBCTTSCEEEEEECT-------TSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT--TSSEEEEEETTTEEEE
T ss_pred             eeeecCcCCCCCCEEEEEEec-------CCCceEEEEECCCCcEEEeecCCCCccccceECC--CCCEEEEEEcCCcEEE
Confidence            347788999999998865221       22336777776544332222233333 3488999  9999999999999999


Q ss_pred             EECCCCCCCCCceEEeccCCCCEEE-------------------EEEecCCCCEEEEE-----ECCCeEEEEECCCCeEE
Q 009380          263 WNLDSQQDEDNGIYLFRTHLGPISG-------------------IVTQQYCLSKIFTS-----CYDGLIRLMDAEKEVFD  318 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~~~~~~~~l~s~-----s~dg~I~vwd~~~~~~~  318 (536)
                      |++.+    +.....+..+......                   +.|+|++ +.++.+     ..+..|.+||+.++...
T Consensus       107 ~d~~~----~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (396)
T 3c5m_A          107 VDLET----LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELE  181 (396)
T ss_dssp             EETTT----CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred             EECCC----CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcEE
Confidence            99986    3433444434332222                   3456666 544433     45678999999998887


Q ss_pred             EeecCCCceeEEEecC-CCCCEEEEEECC------CeEEEEECCCCccceeEecc--CCCeEEEEEecCCCCEEEEEeCC
Q 009380          319 LVYSSEYAVFSLSQQP-NNVNTLYFGEGQ------GGLNIWDVRSRKSATEWLLH--EARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       319 ~~~~~~~~i~~l~~~~-~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h--~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      .+..+...+..+.|+| ++ ..|+..+.+      ..|.+||+..++.. .+..+  ...+..+.|+|++..+++++..+
T Consensus       182 ~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          182 VIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             EEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             eeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCC
Confidence            7777778899999999 66 556555543      36889998765432 23223  23578899999985444443322


Q ss_pred             ----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEe----------------CCCcEEEEeCCCCCc
Q 009380          390 ----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTS----------------FDDTIGIWSGVNFEN  448 (536)
Q Consensus       390 ----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s----------------~dg~I~iwd~~~~~~  448 (536)
                          +.|++||+.+++     ...+.... ... +.|+| +|+++++++                .+..|.+||+.+++.
T Consensus       260 ~~~~~~l~~~d~~~g~-----~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          260 GQTDRVIYKANPETLE-----NEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             TTCCEEEEEECTTTCC-----EEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             CCccceEEEEECCCCC-----eEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence                349999998753     22222122 223 89999 999888755                246799999987765


Q ss_pred             ceEEeccCCCC-----ceeeeeEEEEcCCCCEEEEEcC-CCc--EEEEcCCcccc
Q 009380          449 TSMIHHNNQTG-----RWISSFRAIWGWDDSCVFIGNM-TRT--VEVISPAQRRS  495 (536)
Q Consensus       449 ~~~~~~~~~~~-----~~~~~~~~~~s~~g~~l~~gs~-dg~--I~v~d~~~~~~  495 (536)
                      .....+....+     .......+.|+|+|+.|+..+. ++.  |.++++.++..
T Consensus       333 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          333 QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence            43333221100     0001223679999998877654 454  44445555533

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.76  E-value=1.1e-16  Score=172.57  Aligned_cols=287  Identities=10%  Similarity=-0.000  Sum_probs=189.8

Q ss_pred             ccccCCceEEEEEEecCCccEEEEE--eCCCcEEEEECCCCCCCCCceEEeccCCCCEE---------EEEEe--cCCCC
Q 009380          230 ARIMPGRITQMKFLPCSDVRMVVAG--SKLGNITFWNLDSQQDEDNGIYLFRTHLGPIS---------GIVTQ--QYCLS  296 (536)
Q Consensus       230 ~~~~~~~I~~v~~~p~~~~~~l~tg--~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~---------~l~~~--~~~~~  296 (536)
                      ...|...|..++|++  ++-+++..  +.++...||....    ......+..|...+.         ...|+  ||+ +
T Consensus        19 ~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg-~   91 (662)
T 3azo_A           19 VASRSGRPACVGAVG--DEVWWVAPRPAEAGRATLVRRRA----DGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAG-G   91 (662)
T ss_dssp             HHHTCSCCEEEEEET--TEEEEEEEETTTTTEEEEEEECT----TSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSS-S
T ss_pred             HhhcCCccceeEEcC--CeEEEEecCcccCCcEEEEEECC----CCCcceeCCCCccccccccccCCccceeeeecCC-C
Confidence            466888999999998  87777777  5678899999743    344566666766666         66676  998 6


Q ss_pred             E-EEEEEC-CCeEEEEECC--C-CeEEEeec-----CCCceeEEEecCCCCCEEEEEECC----------CeEEEEECCC
Q 009380          297 K-IFTSCY-DGLIRLMDAE--K-EVFDLVYS-----SEYAVFSLSQQPNNVNTLYFGEGQ----------GGLNIWDVRS  356 (536)
Q Consensus       297 ~-l~s~s~-dg~I~vwd~~--~-~~~~~~~~-----~~~~i~~l~~~~~~~~~l~~g~~d----------g~i~i~d~~~  356 (536)
                      . |+.++. +..|.+|++.  + +....+..     +...+.+++|+|++ +.|++++.+          ..|++||+.+
T Consensus        92 ~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  170 (662)
T 3azo_A           92 PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDG  170 (662)
T ss_dssp             CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred             eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCC
Confidence            6 555543 6778888877  3 55555554     56678999999999 778777766          5899999987


Q ss_pred             ------CccceeEe-ccCCCeEEEEEecCCCCEEEEEeCC--------CcEEEEeCC-CCCCCCCCcceee-cccCceeE
Q 009380          357 ------RKSATEWL-LHEARINTIDFNPRNPNIMATSSTD--------GTACIWDLR-SMATDKPEPMKVL-SHKRAVHS  419 (536)
Q Consensus       357 ------~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~d--------g~i~iwdl~-~~~~~~~~~~~~~-~~~~~v~~  419 (536)
                            ++ ...+. .+...+..++|+||| ++|+.++.+        ..|++||+. ++.  ......+. .|...+..
T Consensus       171 ~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          171 SAAADRSA-VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGR--FADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             TTTTCGGG-SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSC--EEEEEEEEEETTBCEEE
T ss_pred             CccccCCc-eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCc--ccccEEeCCCCCceEcc
Confidence                  44 44454 556778889999998 567666644        379999998 431  00222333 45788999


Q ss_pred             EEEccCCCeEEEEeCCC--cEEEEeCCCCCcceEEeccCCCC--ceee-eeEEEEcCCCCEEEEEcCCCcEEEE--cCCc
Q 009380          420 AYFSPSGSSLATTSFDD--TIGIWSGVNFENTSMIHHNNQTG--RWIS-SFRAIWGWDDSCVFIGNMTRTVEVI--SPAQ  492 (536)
Q Consensus       420 l~~sp~g~~l~t~s~dg--~I~iwd~~~~~~~~~~~~~~~~~--~~~~-~~~~~~s~~g~~l~~gs~dg~I~v~--d~~~  492 (536)
                      +.|+|+|++++++..++  .|.+||+.+++......+.....  .|.. ...+.|++++.++++++. +.++||  |..+
T Consensus       247 ~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          247 AEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             EEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred             eEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence            99999999888888888  57777765555433322211111  0100 123668899999999998 998998  5555


Q ss_pred             cccceeccCCceeeeeeeE-eecCCCCCEEEEEccCCeEEEE
Q 009380          493 RRSVATLQSPYISAIPCRF-HAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       493 ~~~~~~l~~~~~~~~~~~~-~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      ++ +..+..+.....  .+ ++.+ +.-++++++.+....||
T Consensus       326 ~~-~~~l~~~~~~~~--~~~s~~~-~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          326 GE-LVDAAGPWTEWA--ATLTVSG-TRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             TE-EEECCSSCCEEE--EEEEEET-TEEEEEEEETTEEEEEE
T ss_pred             Cc-EEEecCCCCeEE--EEEecCC-CEEEEEEcCCCCCCEEE
Confidence            54 566665433222  33 4443 21234444555444444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=3.1e-16  Score=153.90  Aligned_cols=246  Identities=10%  Similarity=0.031  Sum_probs=178.0

Q ss_pred             CCceEEEEEEecCCccEEEEEeCC------------------------CcEEEEECCCCCCCCCceEEec-cCCCCEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKL------------------------GNITFWNLDSQQDEDNGIYLFR-THLGPISGI  288 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~d------------------------g~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l  288 (536)
                      -+.+.+|+++|  +|+++++...+                        +.|.+||..+    +..+..+. ++-.....+
T Consensus        23 l~~v~~va~d~--~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~----g~~~~~~~~~~~~~p~gi   96 (329)
T 3fvz_A           23 PGQVSGVALDS--KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN----AEILQSSGKNLFYLPHGL   96 (329)
T ss_dssp             CSCEEEEEECT--TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT----CCEEEEECTTTCSSEEEE
T ss_pred             cCCceEEEECC--CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC----CeEEeccCCCccCCceEE
Confidence            46799999999  99999988877                        4799999876    44444443 445678999


Q ss_pred             EEecCCCCEEEEEECCCeEEEEECCCCe-EEEee----------cCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCC
Q 009380          289 VTQQYCLSKIFTSCYDGLIRLMDAEKEV-FDLVY----------SSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRS  356 (536)
Q Consensus       289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~-~~~~~----------~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~  356 (536)
                      ++++++ +++++...++.|++||..... ....+          .+-.....++++|++.+++++.+ .++.|++|| .+
T Consensus        97 a~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A           97 SIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             EECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             EECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            999998 788888889999999987652 22222          22336889999994336777775 689999999 56


Q ss_pred             CccceeEecc----------CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee--ecccCceeEEEEcc
Q 009380          357 RKSATEWLLH----------EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV--LSHKRAVHSAYFSP  424 (536)
Q Consensus       357 ~~~~~~~~~h----------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~--~~~~~~v~~l~~sp  424 (536)
                      +..+..+...          ......|+++|++.+++++...++.|++||..+++    ....+  ..+...+.+++|+|
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----~~~~~~~~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----FVREIKHASFGRNVFAISYIP  250 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEEEECCTTTTTCEEEEEEET
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----EEEEEeccccCCCcceeeecC
Confidence            7766666422          23488999999855788888889999999998653    22222  24567788999999


Q ss_pred             ------CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          425 ------SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       425 ------~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                            +|+.+++...+..|++||..+++.+..+........  ....++++++|.++++...++.|++|++...
T Consensus       251 g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~--~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          251 GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD--MPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS--SEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC--CeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence                  333333334456899999998887777642222122  2334778999988888888999999998653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=3e-16  Score=156.01  Aligned_cols=278  Identities=12%  Similarity=0.042  Sum_probs=189.0

Q ss_pred             ccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEecc-
Q 009380          213 VGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRT-  280 (536)
Q Consensus       213 ~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~-  280 (536)
                      .|+.|.+||...... .....+..+  .++|+|  ++++|++++          .++.|.+||+.+    ...+..+.. 
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t----~~~~~~i~~~  100 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSN--DGKKIYTMTTYHERITRGKRSDVVEVWDADK----LTFEKEISLP  100 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECT--TSSEEEEEEEEETTSSSSCEEEEEEEEETTT----CCEEEEEEEC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECC--CCCEEEEEEecccccccCCCCCEEEEEECcC----CcEEEEEEcC
Confidence            467899999643322 112222333  899999  999998886          356799999986    555555543 


Q ss_pred             -----CCCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380          281 -----HLGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW  352 (536)
Q Consensus       281 -----h~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~  352 (536)
                           +......++|+|++ ++|+++..  +++|.+||+.+++.... ..... ...+.+.|++...+++.+.||.+.+|
T Consensus       101 ~~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v  178 (361)
T 2oiz_A          101 PKRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTI  178 (361)
T ss_dssp             TTBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred             ccccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEE
Confidence                 23456789999999 88888874  58999999999877665 54433 23356778776788899999999999


Q ss_pred             ECCC-Cccce------eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---c--------cc
Q 009380          353 DVRS-RKSAT------EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---S--------HK  414 (536)
Q Consensus       353 d~~~-~~~~~------~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~--------~~  414 (536)
                      ++.. ++...      .+..+..++ .+.+.|++ ..++..+.++.|.++|+.....   ......   .        ..
T Consensus       179 ~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~p  253 (361)
T 2oiz_A          179 NLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEV---KVDGPWSLLNDEDKAKNWVP  253 (361)
T ss_dssp             EECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSC---EEEEEEESCCHHHHHTTCEE
T ss_pred             EECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCc---eecccccccCcccccccccc
Confidence            9865 44331      122222222 33446666 4556667889999999975321   111110   0        01


Q ss_pred             CceeEEEEccCCCeEEEEeC-----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          415 RAVHSAYFSPSGSSLATTSF-----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~-----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                      .....++|+|+++.++++..           .+.|.+||+.+++.+..+....       ...++|+|+|++|++++. +
T Consensus       254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n~-~  325 (361)
T 2oiz_A          254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLDG-G  325 (361)
T ss_dssp             CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEECS-S
T ss_pred             CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeCC-C
Confidence            22234789999887777643           3479999999998887775332       233779999999999987 9


Q ss_pred             cEEEEcCCcc--ccceeccCCceeeeeeeEeecC
Q 009380          484 TVEVISPAQR--RSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       484 ~I~v~d~~~~--~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      .|.+||..++  +.+.++......  +..+.++|
T Consensus       326 ~v~v~D~~t~~l~~~~~i~~~G~~--P~~~~~~p  357 (361)
T 2oiz_A          326 NVNVYDISQPEPKLLRTIEGAAEA--SLQVQFHP  357 (361)
T ss_dssp             CEEEEECSSSSCEEEEEETTSCSS--EEEEEECC
T ss_pred             eEEEEECCCCcceeeEEeccCCCC--cEEEEecC
Confidence            9999999999  888887433222  23567777

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.75  E-value=2e-15  Score=144.72  Aligned_cols=242  Identities=10%  Similarity=0.050  Sum_probs=171.8

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec------cCCCCEEEEEEe-cCCCCEEEEEEC
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR------THLGPISGIVTQ-QYCLSKIFTSCY  303 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~------~h~~~V~~l~~~-~~~~~~l~s~s~  303 (536)
                      ..+-..+.+++++|  ++.++++...++.|.+|+...     ..+..+.      +|...+.++++. +++ .++++...
T Consensus        26 ~g~~~~p~~v~~~~--~g~l~v~~~~~~~i~~~d~~g-----~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~   97 (286)
T 1q7f_A           26 EGQFTEPSGVAVNA--QNDIIVADTNNHRIQIFDKEG-----RFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERS   97 (286)
T ss_dssp             TTCBSCEEEEEECT--TCCEEEEEGGGTEEEEECTTS-----CEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECG
T ss_pred             CCccCCCceEEECC--CCCEEEEECCCCEEEEECCCC-----cEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCC
Confidence            45667799999999  899889888899999999763     3444443      244578999995 554 45554433


Q ss_pred             -CCeEEEEECCCCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecC
Q 009380          304 -DGLIRLMDAEKEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPR  378 (536)
Q Consensus       304 -dg~I~vwd~~~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~  378 (536)
                       ++.|.+||. ++.....+.  +...+.++++.+++ +++++...++.|.+||.. ++.+..+.  .+...+.+|+++|+
T Consensus        98 ~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~  174 (286)
T 1q7f_A           98 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK  174 (286)
T ss_dssp             GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred             CCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC
Confidence             899999995 444443332  33578999999988 677776778899999964 55555554  34567899999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCeEEEEeCCC-cEEEEeCCCCCcceEEecc
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSSLATTSFDD-TIGIWSGVNFENTSMIHHN  455 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~t~s~dg-~I~iwd~~~~~~~~~~~~~  455 (536)
                      + +++++...++.|++||....     ....+.  ++...+..++++++|+++++...++ .|.+||. +++.+..+...
T Consensus       175 g-~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~  247 (286)
T 1q7f_A          175 Q-EIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK  247 (286)
T ss_dssp             S-EEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES
T ss_pred             C-CEEEEECCCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc
Confidence            7 57777777899999997531     222222  2235789999999999888887776 9999995 45555555332


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      ....   ....++++++|+++++ +.++.|++|+.....
T Consensus       248 ~~~~---~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          248 VKHA---QCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             SCCS---CEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCCC---cceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            2111   2234778999976666 578999999876543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.74  E-value=6.7e-16  Score=153.46  Aligned_cols=260  Identities=12%  Similarity=0.043  Sum_probs=181.3

Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----------CCeEEEEECCCCeEEEeec---
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----------DGLIRLMDAEKEVFDLVYS---  322 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----------dg~I~vwd~~~~~~~~~~~---  322 (536)
                      .|+.|.+||..+    .+.+..+..+..+  .++|+|++ ++++++..          ++.|.+||+.+.+......   
T Consensus        29 ~d~~v~v~D~~t----~~~~~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~  101 (361)
T 2oiz_A           29 TESRVHVYDYTN----GKFLGMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP  101 (361)
T ss_dssp             GGCEEEEEETTT----CCEEEEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred             ccCeEEEEECCC----CeEEEEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence            367999999887    5666777766555  89999999 88888863          6789999998876554332   


Q ss_pred             ----CCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          323 ----SEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       323 ----~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                          +......++++|++ ++|+++..  ++.|.+||+.+++.+.. +. +. ....+.+.|++...+++.+.||.+.+|
T Consensus       102 ~~~~~g~~p~~i~~spdg-~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v  178 (361)
T 2oiz_A          102 KRVQGLNYDGLFRQTTDG-KFIVLQNASPATSIGIVDVAKGDYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTI  178 (361)
T ss_dssp             TBCCBCCCGGGEEECTTS-SEEEEEEESSSEEEEEEETTTTEEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred             cccccCCCcceEEECCCC-CEEEEECCCCCCeEEEEECCCCcEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEE
Confidence                23457789999999 78887763  57999999999987776 44 22 223366788776788899999999999


Q ss_pred             eCCCCCCCCCCcc------eee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce--EEeccC----CCCc-e
Q 009380          396 DLRSMATDKPEPM------KVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS--MIHHNN----QTGR-W  461 (536)
Q Consensus       396 dl~~~~~~~~~~~------~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~--~~~~~~----~~~~-~  461 (536)
                      ++....    ...      ... ....+ ..+.++|++..++..+.++.|.++|+.......  .+....    ..+. .
T Consensus       179 ~~~~~g----~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p  253 (361)
T 2oiz_A          179 NLGEDG----KVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVP  253 (361)
T ss_dssp             EECTTS----SEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEE
T ss_pred             EECCCC----cEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccccccccc
Confidence            986521    111      011 11122 233446778778888889999999986543221  111000    0000 0


Q ss_pred             eeeeEEEEcCCCCEEEEEcC-----------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeE
Q 009380          462 ISSFRAIWGWDDSCVFIGNM-----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQV  530 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~-----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v  530 (536)
                      .....++|++++..++++..           .+.|.+||..+++.+.++..+.    +..+.++| ++.+|++++. +.|
T Consensus       254 ~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~sp-dg~~l~v~n~-~~v  327 (361)
T 2oiz_A          254 GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQ-QRNLMLTLDG-GNV  327 (361)
T ss_dssp             CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEET-TTTEEEEECS-SCE
T ss_pred             CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECC-CCCEEEEeCC-CeE
Confidence            00011468999888777643           3479999999999999998765    45788999 6689998887 999


Q ss_pred             EEEecC
Q 009380          531 YVWTSD  536 (536)
Q Consensus       531 ~iW~~d  536 (536)
                      .|||.+
T Consensus       328 ~v~D~~  333 (361)
T 2oiz_A          328 NVYDIS  333 (361)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999964

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=3.5e-17  Score=164.40  Aligned_cols=275  Identities=14%  Similarity=0.073  Sum_probs=179.6

Q ss_pred             CceEEEEEEecCCccEEEEEeCC---CcEEEEECCCCCCCCCceEEeccCCCC-EEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKL---GNITFWNLDSQQDEDNGIYLFRTHLGP-ISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~d---g~v~iwd~~~~~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ..+.+++|+|  +|++|+.....   ..|.+|++.+    +.. ..+..+... ...+.|+|++ ++|+.++.++.|++|
T Consensus        36 ~~~~~~~~Sp--dG~~l~~~~~~~g~~~l~~~d~~~----~~~-~~l~~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~  107 (396)
T 3c5m_A           36 NYFYQKCFTQ--DGKKLLFAGDFDGNRNYYLLNLET----QQA-VQLTEGKGDNTFGGFISTDE-RAFFYVKNELNLMKV  107 (396)
T ss_dssp             CCTTSCCBCT--TSCEEEEEECTTSSCEEEEEETTT----TEE-EECCCSSCBCTTTCEECTTS-SEEEEEETTTEEEEE
T ss_pred             eeeecCcCCC--CCCEEEEEEecCCCceEEEEECCC----CcE-EEeecCCCCccccceECCCC-CEEEEEEcCCcEEEE
Confidence            3477889999  99998877543   3688888875    332 333333333 3347899999 999999999999999


Q ss_pred             ECCCCeEEEeecC-CCceeE-------------------EEecCCCCCEEEEE-----ECCCeEEEEECCCCccceeEec
Q 009380          311 DAEKEVFDLVYSS-EYAVFS-------------------LSQQPNNVNTLYFG-----EGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       311 d~~~~~~~~~~~~-~~~i~~-------------------l~~~~~~~~~l~~g-----~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                      |+.++....+... ......                   +.|+|++ +.+++.     ..+..|.+||+.+++..... .
T Consensus       108 d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~  185 (396)
T 3c5m_A          108 DLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SWEKFAEFYHTNPTCRLIKVDIETGELEVIH-Q  185 (396)
T ss_dssp             ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-E
T ss_pred             ECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCC-cceeeeeeccCCCcceEEEEECCCCcEEeec-c
Confidence            9998876655542 222222                   3566766 444433     45678999999987754443 5


Q ss_pred             cCCCeEEEEEec-CCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecc--cCceeEEEEccCCCeEEEEeCC-
Q 009380          366 HEARINTIDFNP-RNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSH--KRAVHSAYFSPSGSSLATTSFD-  435 (536)
Q Consensus       366 h~~~i~~i~~~p-~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~--~~~v~~l~~sp~g~~l~t~s~d-  435 (536)
                      +...+..+.|+| ++ ..|+..+.+      ..|.+||+....     ...+..+  ...+..+.|+|+|++|+.++.+ 
T Consensus       186 ~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (396)
T 3c5m_A          186 DTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK  259 (396)
T ss_dssp             ESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             CCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence            677899999999 66 455554433      368889986532     2222222  3357889999999988777654 


Q ss_pred             ----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC-CCCEEEEEc----------------CCCcEEEEcCCccc
Q 009380          436 ----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW-DDSCVFIGN----------------MTRTVEVISPAQRR  494 (536)
Q Consensus       436 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~l~~gs----------------~dg~I~v~d~~~~~  494 (536)
                          +.|++||+.+++........   +  ..   +.|+| +|++|++++                .+..|.+||+.+++
T Consensus       260 ~~~~~~l~~~d~~~g~~~~l~~~~---~--~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          260 GQTDRVIYKANPETLENEEVMVMP---P--CS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             TTCCEEEEEECTTTCCEEEEEECC---S--EE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             CCccceEEEEECCCCCeEEeeeCC---C--CC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence                44999999877654332211   1  11   67999 999888754                34689999998875


Q ss_pred             cceeccCCceee---------eeeeEeecCCCCCEEEEEc-cCCeEEEEec
Q 009380          495 SVATLQSPYISA---------IPCRFHAHPHQVGTLAGAT-GGGQVYVWTS  535 (536)
Q Consensus       495 ~~~~l~~~~~~~---------~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~  535 (536)
                      . ..+..+....         ......|+| ++..|+.++ .++...||.+
T Consensus       332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          332 A-QKLCKHSTSWDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             C-CEEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEE
T ss_pred             e-EEccCCCCccccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEE
Confidence            4 3443322211         123467888 567777665 4566666654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=2.4e-15  Score=144.14  Aligned_cols=239  Identities=8%  Similarity=0.054  Sum_probs=167.8

Q ss_pred             cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec------CCCceeEEEec-CCCCCEEEEEEC-CCeEEE
Q 009380          280 THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS------SEYAVFSLSQQ-PNNVNTLYFGEG-QGGLNI  351 (536)
Q Consensus       280 ~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~------~~~~i~~l~~~-~~~~~~l~~g~~-dg~i~i  351 (536)
                      ++-..+.++++++++ .++++...++.|.+||........+..      +...+.++++. +++ +++++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCC-CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEE
Confidence            445678999999998 888888889999999988543333221      22468899994 554 44444433 789999


Q ss_pred             EECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCC
Q 009380          352 WDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGS  427 (536)
Q Consensus       352 ~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~  427 (536)
                      || .+++.+..+. .+...+.+|++.|++ +++++...++.|.+||...      ......   .+...+.+++++|+|+
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g------~~~~~~~~~~~~~~p~~i~~~~~g~  176 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG------NVLHKFGCSKHLEFPNGVVVNDKQE  176 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS------CEEEEEECTTTCSSEEEEEECSSSE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC------CEEEEeCCCCccCCcEEEEECCCCC
Confidence            99 5676666664 344678999999987 6888877789999999653      222222   3445789999999999


Q ss_pred             eEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-cEEEEcCCccccceeccCCceee
Q 009380          428 SLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-TVEVISPAQRRSVATLQSPYISA  506 (536)
Q Consensus       428 ~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-~I~v~d~~~~~~~~~l~~~~~~~  506 (536)
                      ++++...++.|.+||.. ++.+..+.......   ....++++++|.++++...++ .|.+|+.. ++.+..+..+....
T Consensus       177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~---~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~  251 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITN---YPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHA  251 (286)
T ss_dssp             EEEEEGGGTEEEEEETT-CCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCS
T ss_pred             EEEEECCCCEEEEEcCC-CCEEEEEccCCccC---CCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCC
Confidence            88887889999999974 44444442211111   223377899998888887776 99999964 55666665443333


Q ss_pred             eeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          507 IPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       507 ~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .+..++++| ++.++++ +.|+.|++|++
T Consensus       252 ~~~~i~~~~-~g~l~vs-~~~~~v~v~~~  278 (286)
T 1q7f_A          252 QCFDVALMD-DGSVVLA-SKDYRLYIYRY  278 (286)
T ss_dssp             CEEEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred             cceeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence            345678888 5566666 67999999986

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=2.3e-16  Score=170.01  Aligned_cols=289  Identities=8%  Similarity=-0.057  Sum_probs=186.9

Q ss_pred             ecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceE---------EEEEE--ecC
Q 009380          179 IKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRIT---------QMKFL--PCS  246 (536)
Q Consensus       179 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~---------~v~~~--p~~  246 (536)
                      +.+|...+..+.+++++..++..        +...++...||.+... ....+..+...+.         ...|+  |  
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP--   88 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAP--------RPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP--   88 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEE--------ETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS--
T ss_pred             HhhcCCccceeEEcCCeEEEEec--------CcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec--
Confidence            56788889999999876555532        2244567788875222 1222334444555         56676  8  


Q ss_pred             CccE-EEEEeC-CCcEEEEECCCCCCCCCceEEecc-----CCCCEEEEEEecCCCCEEEEEECC----------CeEEE
Q 009380          247 DVRM-VVAGSK-LGNITFWNLDSQQDEDNGIYLFRT-----HLGPISGIVTQQYCLSKIFTSCYD----------GLIRL  309 (536)
Q Consensus       247 ~~~~-l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~~l~s~s~d----------g~I~v  309 (536)
                      ||+. |+.++. +..|.+|++....  ......+..     |...+.+++|+|+| +.|++++.+          ..|++
T Consensus        89 Dg~~~la~~~~~~~~l~~~~~~~~g--~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~  165 (662)
T 3azo_A           89 AGGPLLVFTHFGDQRLYAFEPDAPG--GAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAA  165 (662)
T ss_dssp             SSSCEEEEEBTTTCCEEEECTTSTT--CCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CCCeEEEEEECCCCeEEEEcCCCCC--CCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEE
Confidence            8888 766554 4566666664000  022334444     66778999999999 899888877          58999


Q ss_pred             EECCC------CeEEEee-cCCCceeEEEecCCCCCEEEEEECC--------CeEEEEECC-CC---ccceeEeccCCCe
Q 009380          310 MDAEK------EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQ--------GGLNIWDVR-SR---KSATEWLLHEARI  370 (536)
Q Consensus       310 wd~~~------~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~d--------g~i~i~d~~-~~---~~~~~~~~h~~~i  370 (536)
                      ||+.+      +....+. .+...+..++|+|++ +.|++++.+        ..|++||+. ++   +.......|...+
T Consensus       166 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~  244 (662)
T 3azo_A          166 VPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAI  244 (662)
T ss_dssp             EETTSTTTTCGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCE
T ss_pred             EECCCCccccCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceE
Confidence            99998      7777666 666788899999999 777776644        479999998 56   3333344567889


Q ss_pred             EEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcceeecccCc---------eeEEEEccCCCeEEEEeCCCcEE
Q 009380          371 NTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPMKVLSHKRA---------VHSAYFSPSGSSLATTSFDDTIG  439 (536)
Q Consensus       371 ~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~~~~~~~~~---------v~~l~~sp~g~~l~t~s~dg~I~  439 (536)
                      ..+.|+|+|. ++++++.++  .|.+||+.+++     ...+..+...         +.+++|+|++.++++++. +.++
T Consensus       245 ~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~-----~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~  317 (662)
T 3azo_A          245 AQAEWAPDGS-LIVATDRTGWWNLHRVDPATGA-----ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV  317 (662)
T ss_dssp             EEEEECTTSC-EEEEECTTSSCEEEEECTTTCC-----EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred             cceEECCCCe-EEEEECCCCCeEEEEEECCCCc-----eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence            9999999985 888888888  56666665432     2222222111         567899999999999988 9999


Q ss_pred             EE--eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE--EEEEcCCC--cEEEEcCCcccc
Q 009380          440 IW--SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC--VFIGNMTR--TVEVISPAQRRS  495 (536)
Q Consensus       440 iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--l~~gs~dg--~I~v~d~~~~~~  495 (536)
                      ||  |+.+++ ...+...   ...+..  + |++++..  +++++.+.  .|.++|+.+++.
T Consensus       318 l~~~d~~~~~-~~~l~~~---~~~~~~--~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          318 LGILDPESGE-LVDAAGP---WTEWAA--T-LTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EEEEETTTTE-EEECCSS---CCEEEE--E-EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEECCCCc-EEEecCC---CCeEEE--E-EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            99  554443 3333211   112222  2 2444443  44445554  455566666643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=3.1e-15  Score=146.75  Aligned_cols=243  Identities=12%  Similarity=0.066  Sum_probs=173.8

Q ss_pred             CCCEEEEEEecCCCCEEEEEECC------------------------CeEEEEECCCCeEEEeecC--CCceeEEEecCC
Q 009380          282 LGPISGIVTQQYCLSKIFTSCYD------------------------GLIRLMDAEKEVFDLVYSS--EYAVFSLSQQPN  335 (536)
Q Consensus       282 ~~~V~~l~~~~~~~~~l~s~s~d------------------------g~I~vwd~~~~~~~~~~~~--~~~i~~l~~~~~  335 (536)
                      -+.+.+|+++|++ +++++.+.+                        +.|.+||..++.+......  -..+..++++++
T Consensus        23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            4679999999998 888887777                        4799999998877665543  347889999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCc-cceeE---------eccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCC
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRK-SATEW---------LLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDK  404 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~-~~~~~---------~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~  404 (536)
                      + +++++...++.|++||..... .+..+         ..+......|+++|++.+++++.+ .++.|++||.. +    
T Consensus       102 g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g----  175 (329)
T 3fvz_A          102 G-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G----  175 (329)
T ss_dssp             S-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S----
T ss_pred             C-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C----
Confidence            8 677777788999999976442 45555         234457899999994447888876 68999999943 2    


Q ss_pred             CCcceeec-----------ccCceeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcC-
Q 009380          405 PEPMKVLS-----------HKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGW-  471 (536)
Q Consensus       405 ~~~~~~~~-----------~~~~v~~l~~sp~-g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  471 (536)
                       ......+           +-.....++++|+ +.++++...++.|++||..+++.+..+..... +....  .+.|+| 
T Consensus       176 -~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-~~~~~--~~~~~pg  251 (329)
T 3fvz_A          176 -KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-GRNVF--AISYIPG  251 (329)
T ss_dssp             -CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-TTCEE--EEEEETT
T ss_pred             -CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-CCCcc--eeeecCC
Confidence             2222222           2234889999998 77777777889999999987877766643222 22222  356777 


Q ss_pred             -----CCCEEEEEcCCCcEEEEcCCccccceeccCC-ceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          472 -----DDSCVFIGNMTRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       472 -----~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                           +|..+++...+..|.+|+..+++.+..+... .....+..++++| ++.++++...++.|++|+++
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEE
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCC
Confidence                 3333333344568999999999888877421 1112245778888 56888899999999999863

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.72  E-value=2.1e-15  Score=147.91  Aligned_cols=272  Identities=8%  Similarity=-0.020  Sum_probs=184.8

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ..|.++.|+|  ++..++..+.++.++.|.       ......+..+...+.+++|++++ .+++++..++.|.+||..+
T Consensus         6 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~   75 (333)
T 2dg1_A            6 QDLPTLFYSG--KSNSAVPIISESELQTIT-------AEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET   75 (333)
T ss_dssp             CCCCBCCSCG--GGGCSSCCCCGGGSCEEE-------CEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTT
T ss_pred             cccceeeecC--CccceeEEeecccCcccc-------cceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCC
Confidence            4567788888  777777667788999992       34566677777788999999998 7777888899999999998


Q ss_pred             CeEEEee-cCCCceeEEEecCCCCCEEEEEECC----CeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEe
Q 009380          315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +....+. .+...+.++++++++ +++++...+    +.|.+||..++.....+.  .+...+.++.+.|++ +++++..
T Consensus        76 ~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~  153 (333)
T 2dg1_A           76 KEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDF  153 (333)
T ss_dssp             CCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEEC
T ss_pred             CcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEec
Confidence            8776554 456789999999998 666666555    689999998776543332  244679999999987 5666654


Q ss_pred             C------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE-EeCCCcEEEEeCCC-CCcceEEe----cc
Q 009380          388 T------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVN-FENTSMIH----HN  455 (536)
Q Consensus       388 ~------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t-~s~dg~I~iwd~~~-~~~~~~~~----~~  455 (536)
                      .      .+.|..||..++     ....+..+...+..++|+|+|+.|+. .+.++.|.+||+.+ +.....+.    ..
T Consensus       154 ~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~  228 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFR-----TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  228 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSC-----CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             cccccCCCceEEEEeCCCC-----EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEe
Confidence            3      245666665542     22233334456789999999986654 45678999999864 33332211    00


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee----eeeeeEeecCCCCCEEEEEccC
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS----AIPCRFHAHPHQVGTLAGATGG  527 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~----~~~~~~~~~p~~~~~lasgs~D  527 (536)
                      ......  ...++++++|.++++...++.|.+||.. ++.+..+..+...    ..+..++|+| ++..|+.++.+
T Consensus       229 ~~~~~~--~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~-dg~~L~v~~~~  300 (333)
T 2dg1_A          229 FTGHEG--PDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIP-GTNQLIICSND  300 (333)
T ss_dssp             CCSSSE--EEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred             cCCCCC--CCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECC-CCCEEEEEeCc
Confidence            011112  2236789999888777778899999984 5565555433210    0234567777 45666655554

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.71  E-value=6.2e-15  Score=144.57  Aligned_cols=273  Identities=11%  Similarity=0.016  Sum_probs=178.9

Q ss_pred             eeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEEC
Q 009380          186 FKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNL  265 (536)
Q Consensus       186 v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~  265 (536)
                      |.++.|++++..+...          ..++.+..|.  ..+......+...+.+++|+|  ++.+++++..++.|.+||.
T Consensus         8 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~g~l~~~~~~~~~i~~~d~   73 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPI----------ISESELQTIT--AEPWLEISKKGLQLEGLNFDR--QGQLFLLDVFEGNIFKINP   73 (333)
T ss_dssp             CCBCCSCGGGGCSSCC----------CCGGGSCEEE--CEEEEEEESSCCCEEEEEECT--TSCEEEEETTTCEEEEECT
T ss_pred             cceeeecCCccceeEE----------eecccCcccc--cceeEEEeccCccccCcEECC--CCCEEEEECCCCEEEEEeC
Confidence            5566777777666533          2334555552  122222334556789999999  9998888888999999998


Q ss_pred             CCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEee---cCCCceeEEEecCCCCC
Q 009380          266 DSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVY---SSEYAVFSLSQQPNNVN  338 (536)
Q Consensus       266 ~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~---~~~~~i~~l~~~~~~~~  338 (536)
                      .+    .........+...+.+++|++++ .++++...+    +.|.+||..++......   .....+.+++++|++ +
T Consensus        74 ~~----~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~  147 (333)
T 2dg1_A           74 ET----KEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-G  147 (333)
T ss_dssp             TT----CCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-C
T ss_pred             CC----CcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-C
Confidence            76    33333333566789999999998 777777666    68999999887665332   234578999999988 6


Q ss_pred             EEEEEEC------CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce---
Q 009380          339 TLYFGEG------QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK---  409 (536)
Q Consensus       339 ~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~---  409 (536)
                      ++++...      .+.|..+|..+++.. .+..+...+..++|+|++..++++.+.++.|.+||+....   .....   
T Consensus       148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g---~~~~~~~~  223 (333)
T 2dg1_A          148 FYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG---VTIQPFGA  223 (333)
T ss_dssp             EEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS---SSEEEEEE
T ss_pred             EEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC---cCcccccc
Confidence            6555443      356777776655433 3333445688999999884455666667899999986421   01110   


Q ss_pred             --ee--cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC-CCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          410 --VL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ-TGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       410 --~~--~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                        ..  .....+..++++++|+++++...++.|.+||. +++....+..... .+.......++|++++..|++++.++
T Consensus       224 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          224 TIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             eEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence              11  11146788999999998888778899999998 4555555432211 11111223367889987877766653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.70  E-value=3.4e-14  Score=148.65  Aligned_cols=309  Identities=9%  Similarity=-0.013  Sum_probs=203.3

Q ss_pred             cccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECC--CCCCCCCceEEeccCCCCEEE
Q 009380          210 KIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLD--SQQDEDNGIYLFRTHLGPISG  287 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~--~~~~~~~~~~~~~~h~~~V~~  287 (536)
                      ....++.|.++|.......-.-.....+..+.|+|  ||+++++++.++.|.+||+.  +    ...+..+.... ....
T Consensus       172 ~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~Sp--DGr~lyv~~~dg~V~viD~~~~t----~~~v~~i~~G~-~P~~  244 (567)
T 1qks_A          172 TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKE----PTTVAEIKIGS-EARS  244 (567)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECSSCEEEEEECT--TSCEEEEEETTSEEEEEETTSSS----CCEEEEEECCS-EEEE
T ss_pred             EeCCCCeEEEEECCCCeEEEEEeCCCCccceEECC--CCCEEEEEcCCCeEEEEECCCCC----CcEeEEEecCC-CCce
Confidence            44667899999975443221112344678999999  99999999999999999995  4    45666665533 4578


Q ss_pred             EEEe----cCCCCEEEEEEC-CCeEEEEECCCCeEEEeecC------------CCceeEEEecCCCCCEEEEEECCCeEE
Q 009380          288 IVTQ----QYCLSKIFTSCY-DGLIRLMDAEKEVFDLVYSS------------EYAVFSLSQQPNNVNTLYFGEGQGGLN  350 (536)
Q Consensus       288 l~~~----~~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~~~------------~~~i~~l~~~~~~~~~l~~g~~dg~i~  350 (536)
                      ++|+    |+| ++++++.+ +++|.++|..+.+.......            ...+..+..+++++.+++....+|.|.
T Consensus       245 ia~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          245 IETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEccccCCCC-CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            9999    698 77776655 59999999988766544321            125778888888766666666779999


Q ss_pred             EEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee---ecccCceeEEEEccCC
Q 009380          351 IWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV---LSHKRAVHSAYFSPSG  426 (536)
Q Consensus       351 i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~---~~~~~~v~~l~~sp~g  426 (536)
                      ++|..+.+.+.... .......++.|+|++.++++++..++.|.++|+.+++..  .....   ..|.+.-..+ ++|++
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~--~~i~vgg~~Phpg~g~~~-~~p~~  400 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV--AIEDTGGQTPHPGRGANF-VHPTF  400 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE--EEEECSSSSBCCTTCEEE-EETTT
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEE--EEEeccCcCCCCccceee-ECCCC
Confidence            99998754322211 244567789999998655666667889999999986411  11111   1233222122 68875


Q ss_pred             C-eEEEEe-CCCcEEEEeCCC-------CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-------CCcEEEEcC
Q 009380          427 S-SLATTS-FDDTIGIWSGVN-------FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-------TRTVEVISP  490 (536)
Q Consensus       427 ~-~l~t~s-~dg~I~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-------dg~I~v~d~  490 (536)
                      . .++++. .++.|.++|..+       ++.+..+..... +    .+.+..+|++++|++...       .+.|.|||+
T Consensus       401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~-g----~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG-G----SLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS-C----CCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred             CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC-C----CEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence            4 444544 468999999987       455555543221 1    122456899999998763       358999999


Q ss_pred             Ccc-----ccc-eeccC------CceeeeeeeEeecCCCCCEEEEEc-----cCCeEEEEec
Q 009380          491 AQR-----RSV-ATLQS------PYISAIPCRFHAHPHQVGTLAGAT-----GGGQVYVWTS  535 (536)
Q Consensus       491 ~~~-----~~~-~~l~~------~~~~~~~~~~~~~p~~~~~lasgs-----~Dg~v~iW~~  535 (536)
                      .+.     ... ..+..      ......+..+.|+| +|..+..+.     .++.|.|+|.
T Consensus       476 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~v~D~  536 (567)
T 1qks_A          476 KAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDD  536 (567)
T ss_dssp             GGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEET
T ss_pred             CcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEEEEEC
Confidence            876     211 22210      01122335788888 566666553     3799999885

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=1.2e-14  Score=143.32  Aligned_cols=257  Identities=12%  Similarity=0.040  Sum_probs=166.7

Q ss_pred             ceEEEEEEecCCccEEEEE---------eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--
Q 009380          236 RITQMKFLPCSDVRMVVAG---------SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--  304 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg---------~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--  304 (536)
                      .+..+++    ||+.|+..         ..++.|.+|++.+    +. ...+    ..+..+.|+|+| ++|+.++.+  
T Consensus        16 ~~~~~~~----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~----~~-~~~l----~~~~~~~~SpDg-~~la~~~~~~~   81 (347)
T 2gop_A           16 YLSDPRT----KGELVAYVLTKANLKDNKYENTIVIENLKN----NA-RRFI----ENATMPRISPDG-KKIAFMRANEE   81 (347)
T ss_dssp             EEEEEEE----ETTEEEEEEEEEETTTTEEEEEEEEEETTT----CC-EEEE----ESCEEEEECTTS-SEEEEEEEETT
T ss_pred             EcccceE----CCcEEEEEEeecCcccCCccceEEEEeCCC----Cc-eEEc----ccCCCeEECCCC-CEEEEEEeccC
Confidence            3555666    45555543         2256799999986    22 2233    467899999999 888877654  


Q ss_pred             -C--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC---------------------------CCeEEEEEC
Q 009380          305 -G--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG---------------------------QGGLNIWDV  354 (536)
Q Consensus       305 -g--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~---------------------------dg~i~i~d~  354 (536)
                       +  .|.+||+.++....+..... +..++|+|++ +.|++++.                           ...|.+||+
T Consensus        82 ~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           82 KKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             CCcceEEEEECCCCceEEEEcCCC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence             3  48888998888776666555 9999999998 66666653                           257999999


Q ss_pred             CCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC-------cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380          355 RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG-------TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS  427 (536)
Q Consensus       355 ~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg-------~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~  427 (536)
                      .+++.+..+.. . .+..+.|+|++  ++++++.++       ...||.+.++     ....+..+ ..+..+  +|+|+
T Consensus       160 ~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~-----~~~~l~~~-~~~~~~--spdg~  227 (347)
T 2gop_A          160 ESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG-----KEEKMFEK-VSFYAV--DSDGE  227 (347)
T ss_dssp             TTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-----EEEEEEEE-ESEEEE--EECSS
T ss_pred             CCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC-----ceEEeccC-cceeeE--CCCCC
Confidence            98876455554 4 78899999987  677665542       3445544432     23333344 445444  99999


Q ss_pred             eEEEEeCC--------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceec
Q 009380          428 SLATTSFD--------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       428 ~l~t~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l  499 (536)
                      +|+.++.+        ..|.+||  +++......   .....+.. .+.|+ ++ ++++++.++.++|| +.+++. ..+
T Consensus       228 ~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~~~~~~~-~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~  297 (347)
T 2gop_A          228 RILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EVDRGVGQ-AKIKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPI  297 (347)
T ss_dssp             CEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TCCSEEEE-EEEET-TE-EEEEEEETTEEEEE-EESSSE-EEE
T ss_pred             EEEEEEccccCCccccceEEEEC--CCceEeccc---cCCcccCC-ccEEc-Cc-EEEEEecCCcEEEE-EcCCce-EEE
Confidence            98887754        3688888  433222111   11112221 16789 88 88999999999999 875544 333


Q ss_pred             cCCceeeeeeeEeecCCCCCEEEEEccCCeE-EEEec
Q 009380          500 QSPYISAIPCRFHAHPHQVGTLAGATGGGQV-YVWTS  535 (536)
Q Consensus       500 ~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v-~iW~~  535 (536)
                      ..+.. .+ ..++|+|   .++++++.++.. .||.+
T Consensus       298 ~~~~~-~v-~~~~~s~---~~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          298 AKGRH-WI-MGFDVDE---IVVYLKETATRLRELFTW  329 (347)
T ss_dssp             ECSSS-EE-EEEEESS---SEEEEEECSSSCCEEEEE
T ss_pred             ecCCC-eE-EeeeeeC---cEEEEEcCCCChHHheEe
Confidence            33322 22 4577887   577777777665 77765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=9e-14  Score=145.46  Aligned_cols=273  Identities=12%  Similarity=0.038  Sum_probs=196.3

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC--CCeEEEeecCC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE--KEVFDLVYSSE  324 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~--~~~~~~~~~~~  324 (536)
                      .+.++++...++.|.++|..+    ...+..+.. ...+..+.|+|++ +++++++.|+.|.+||+.  +.+........
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t----~~v~~~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G  239 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGST----YEIKTVLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  239 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTT----CCEEEEEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             CceEEEEeCCCCeEEEEECCC----CeEEEEEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecC
Confidence            556777888899999999987    566666654 3457799999999 999999999999999995  66655555555


Q ss_pred             CceeEEEec----CCCCCEEEEE-ECCCeEEEEECCCCccceeEec----------cCC-CeEEEEEecCCCCEEEEEeC
Q 009380          325 YAVFSLSQQ----PNNVNTLYFG-EGQGGLNIWDVRSRKSATEWLL----------HEA-RINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       325 ~~i~~l~~~----~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~----------h~~-~i~~i~~~p~~~~~l~s~s~  388 (536)
                      .....++|+    |++ ++++++ ..+++|.++|..+.+.+..+..          |.. .+..+..+++++.++++...
T Consensus       240 ~~P~~ia~s~~~~pDG-k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~  318 (567)
T 1qks_A          240 SEARSIETSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE  318 (567)
T ss_dssp             SEEEEEEECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCceeEEccccCCCC-CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecC
Confidence            667899999    688 566555 4569999999999988777652          212 67889999988777777778


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEec-cC--CCCceeee
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHH-NN--QTGRWISS  464 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~-~~--~~~~~~~~  464 (536)
                      +|.|.++|....+   ...............+.|+|+|++|++++ .++.|.++|+.+++....+.. ..  ..++... 
T Consensus       319 ~g~v~~vd~~~~~---~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-  394 (567)
T 1qks_A          319 TGKILLVDYTDLN---NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-  394 (567)
T ss_dssp             TTEEEEEETTCSS---EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-
T ss_pred             CCeEEEEecCCCc---cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-
Confidence            8999999987642   11122234455677899999999887766 578899999999887666643 11  1112221 


Q ss_pred             eEEEEcCCCCE-EEEEc-CCCcEEEEcCCc-------cccceeccCCceeeeeeeEeecCCCCCEEEEEcc-------CC
Q 009380          465 FRAIWGWDDSC-VFIGN-MTRTVEVISPAQ-------RRSVATLQSPYISAIPCRFHAHPHQVGTLAGATG-------GG  528 (536)
Q Consensus       465 ~~~~~s~~g~~-l~~gs-~dg~I~v~d~~~-------~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~-------Dg  528 (536)
                         .++|++.. ++++. .++.|.++|..+       .+.+.++......  .+.+..|| ++.+|.+...       ++
T Consensus       395 ---~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p-~~~~l~v~~~~~~~~~~~~  468 (567)
T 1qks_A          395 ---FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHP-NSQYLYVDATLNPEAEISG  468 (567)
T ss_dssp             ---EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCT-TCSEEEEECTTCSSHHHHT
T ss_pred             ---eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCC-CCCeEEEecCCCCCcccCc
Confidence               14777444 44443 458999999987       5567777654322  23467888 5577777652       45


Q ss_pred             eEEEEecC
Q 009380          529 QVYVWTSD  536 (536)
Q Consensus       529 ~v~iW~~d  536 (536)
                      .|.|+|++
T Consensus       469 ~v~v~d~~  476 (567)
T 1qks_A          469 SVAVFDIK  476 (567)
T ss_dssp             CEEEEEGG
T ss_pred             eEEEEECC
Confidence            89999863

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.67  E-value=1.7e-14  Score=142.17  Aligned_cols=262  Identities=11%  Similarity=0.100  Sum_probs=166.8

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---C--c
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---G--N  259 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---g--~  259 (536)
                      .+..+.+  ||+.++....... ......++.|.+|++.......+    ..+..++|+|  ||++|+..+.+   +  .
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKAN-LKDNKYENTIVIENLKNNARRFI----ENATMPRISP--DGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEE-TTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECT--TSSEEEEEEEETTTTEEE
T ss_pred             EcccceE--CCcEEEEEEeecC-cccCCccceEEEEeCCCCceEEc----ccCCCeEECC--CCCEEEEEEeccCCCcce
Confidence            3445556  8888776522211 11223466888888755433222    6789999999  99999887654   3  3


Q ss_pred             EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC---------------------------CeEEEEEC
Q 009380          260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD---------------------------GLIRLMDA  312 (536)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---------------------------g~I~vwd~  312 (536)
                      |.+|++.+    +........ .. +..+.|+|++ +.|+.++.+                           ..|.+||+
T Consensus        87 l~~~~~~~----g~~~~l~~~-~~-~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~  159 (347)
T 2gop_A           87 IWVADLET----LSSKKILEA-KN-IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT  159 (347)
T ss_dssp             EEEEETTT----TEEEEEEEE-SE-EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred             EEEEECCC----CceEEEEcC-CC-ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence            77778775    333333333 33 9999999999 877777642                           57999999


Q ss_pred             CCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCC---------eEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          313 EKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQG---------GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       313 ~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg---------~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      .++.. ..+.. . .+..++|+|++  +++++..++         .|.++|  +++ ...+..+ ..+..+  +|+|. .
T Consensus       160 ~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~-~  228 (347)
T 2gop_A          160 ESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGE-R  228 (347)
T ss_dssp             TTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSS-C
T ss_pred             CCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCC-E
Confidence            98876 44444 4 78899999997  777765542         455555  444 3444444 455544  99885 4


Q ss_pred             EEEEeCC--------CcEEEEeCCCCCCCCCCcceee-cccCceeE-EEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          383 MATSSTD--------GTACIWDLRSMATDKPEPMKVL-SHKRAVHS-AYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       383 l~s~s~d--------g~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~-l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      |+.++.+        ..|.+||  ++     ....+. .+...+.. +.|+ ++ ++++++.++.++|| +.+++....+
T Consensus       229 l~~~~~~~~~~~~~~~~l~~~d--~~-----~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~  298 (347)
T 2gop_A          229 ILLYGKPEKKYMSEHNKLYIYD--GK-----EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA  298 (347)
T ss_dssp             EEEEECCSSSCCCSSCEEEEEC--SS-----CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE
T ss_pred             EEEEEccccCCccccceEEEEC--CC-----ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe
Confidence            5554433        3688888  32     222222 45677886 9999 88 88999999999999 8754432222


Q ss_pred             eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE-EEEcCC
Q 009380          453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV-EVISPA  491 (536)
Q Consensus       453 ~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I-~v~d~~  491 (536)
                      .+    ...+.  .+.|++  .++++++.++.. .||.+.
T Consensus       299 ~~----~~~v~--~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          299 KG----RHWIM--GFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             CS----SSEEE--EEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             cC----CCeEE--eeeeeC--cEEEEEcCCCChHHheEeC
Confidence            21    22233  366888  577777666553 666655

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.66  E-value=2.7e-14  Score=139.89  Aligned_cols=260  Identities=7%  Similarity=-0.033  Sum_probs=179.4

Q ss_pred             CCCcEEEEECCCCCCCCCceEEe------ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeE
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLF------RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFS  329 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~------~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~  329 (536)
                      .++.|.+||..+.    .....+      .........+.+.. + .++++...++.|.+||..+++....+........
T Consensus        15 ~~~~l~~~d~~t~----~~~~~i~~~~n~~~lg~~~~~i~~~~-~-~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~   88 (328)
T 3dsm_A           15 SNATLSYYDPATC----EVENEVFYRANGFKLGDVAQSMVIRD-G-IGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRY   88 (328)
T ss_dssp             CCBEEEEEETTTT----EEECSHHHHHHSSCCBSCEEEEEEET-T-EEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEE
T ss_pred             CCceEEEEECCCC----EEhhhhHhhhcCcccCccceEEEEEC-C-EEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcE
Confidence            4789999999873    322222      11224467787753 2 5566666689999999999888666666678899


Q ss_pred             EEecCCCCCEEEEEE-CCCeEEEEECCCCccceeEeccC-----CCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 009380          330 LSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATEWLLHE-----ARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMAT  402 (536)
Q Consensus       330 l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~-----~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~  402 (536)
                      +++++++  .++++. .++.|.+||+.+++....+....     .....|++ . +..++++.. .++.|.+||+.+++ 
T Consensus        89 i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~-  163 (328)
T 3dsm_A           89 IHFLSDE--KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK-  163 (328)
T ss_dssp             EEEEETT--EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE-
T ss_pred             EEEeCCC--eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe-
Confidence            9998886  455555 88999999999998777766332     14567777 3 434555544 48899999998853 


Q ss_pred             CCCCcceeecccCceeEEEEccCCCeEEEEeCC----------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC
Q 009380          403 DKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD----------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       403 ~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  472 (536)
                          .............+.++|+|++++++..+          +.|.+||..+++....+....  +..  ...++|+|+
T Consensus       164 ----~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~--p~~la~~~d  235 (328)
T 3dsm_A          164 ----VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDW--PSEVQLNGT  235 (328)
T ss_dssp             ----EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCC--CEEEEECTT
T ss_pred             ----EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCC--ceeEEEecC
Confidence                23333334456789999999977776654          789999998887665554221  211  223778999


Q ss_pred             CCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEE----ccCCeEEEEecC
Q 009380          473 DSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGA----TGGGQVYVWTSD  536 (536)
Q Consensus       473 g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasg----s~Dg~v~iW~~d  536 (536)
                      ++.|++++.  .|.+||..+++.............+..++++|.++.++++.    ..++.|.+|+.+
T Consensus       236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          236 RDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             CCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            999988865  89999998887542111111123345788998666777777    678999999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=2.1e-13  Score=133.62  Aligned_cols=264  Identities=8%  Similarity=-0.063  Sum_probs=180.8

Q ss_pred             ccceEEecccccCccc--ccc-----ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCE
Q 009380          213 VGSCVDIGSLTLKPEN--IAR-----IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPI  285 (536)
Q Consensus       213 ~dg~v~lw~~~~~~~~--~~~-----~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V  285 (536)
                      .++.|.++|.......  +..     ........+.+.   ++.++++...++.|.+||..+    .+.+..+. .....
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t----~~~~~~i~-~~~~p   86 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINT----FKEVGRIT-GFTSP   86 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTT----CCEEEEEE-CCSSE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcc----cEEEEEcC-CCCCC
Confidence            4678899987543221  101     122446778774   456677777789999999997    66666664 34678


Q ss_pred             EEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCC------ceeEEEecCCCCCEEEEEE--CCCeEEEEECCCC
Q 009380          286 SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEY------AVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRSR  357 (536)
Q Consensus       286 ~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~------~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~~  357 (536)
                      ..+++++++ ..+++...++.|.+||+.+++.........      ....+++  ++ ..++++.  .++.|.+||+.++
T Consensus        87 ~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~-~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A           87 RYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG-KYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET-TEEEEEECTTCCEEEEEETTTT
T ss_pred             cEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC-CEEEEEcCCCCCEEEEEECCCC
Confidence            899999987 555554489999999999988765544333      5667777  33 4566665  4789999999999


Q ss_pred             ccceeEeccCCCeEEEEEecCCCCEEEEEeCC----------CcEEEEeCCCCCCCCCCcceeec--ccCceeEEEEccC
Q 009380          358 KSATEWLLHEARINTIDFNPRNPNIMATSSTD----------GTACIWDLRSMATDKPEPMKVLS--HKRAVHSAYFSPS  425 (536)
Q Consensus       358 ~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d----------g~i~iwdl~~~~~~~~~~~~~~~--~~~~v~~l~~sp~  425 (536)
                      +.+..+.. ......+.++|++ ++++++..+          +.|.+||..+++     +.....  .......++|+|+
T Consensus       163 ~~~~~i~~-g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~-----v~~~~~~~~g~~p~~la~~~d  235 (328)
T 3dsm_A          163 KVVDELTI-GIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFT-----VEKQFKFKLGDWPSEVQLNGT  235 (328)
T ss_dssp             EEEEEEEC-SSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE-----EEEEEECCTTCCCEEEEECTT
T ss_pred             eEEEEEEc-CCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCe-----EEEEEecCCCCCceeEEEecC
Confidence            88777764 3445788999987 566665544          789999998753     222222  2346899999999


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCC-CCEEEEE----cCCCcEEEEcCCccccceecc
Q 009380          426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWD-DSCVFIG----NMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~g----s~dg~I~v~d~~~~~~~~~l~  500 (536)
                      +++|+++..  .|.+||..+++........ ..+..  ...++++|+ +.++++.    ..++.|.+||.. ++.+.++.
T Consensus       236 ~~~lyv~~~--~v~~~d~~t~~~~~~~~~~-~~~~~--p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          236 RDTLYWINN--DIWRMPVEADRVPVRPFLE-FRDTK--YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             SCEEEEESS--SEEEEETTCSSCCSSCSBC-CCSSC--EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             CCEEEEEcc--EEEEEECCCCceeeeeeec-CCCCc--eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            998888765  8999999877653211000 00122  223678985 5555555    567899999998 88888775


Q ss_pred             C
Q 009380          501 S  501 (536)
Q Consensus       501 ~  501 (536)
                      .
T Consensus       310 ~  310 (328)
T 3dsm_A          310 V  310 (328)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=2.3e-12  Score=123.67  Aligned_cols=277  Identities=10%  Similarity=-0.006  Sum_probs=182.5

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...+.++++.+  +|.++++...++.|.+|+.. .   .........+...+.++++.+++ .++++...++.|..||..
T Consensus        14 ~~~~~~i~~d~--~g~l~v~~~~~~~v~~~d~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           14 DTGPYGITVSD--KGKVWITQHKANMISCINLD-G---KITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SCCEEEEEECT--TSCEEEEETTTTEEEEECTT-C---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CCCccceEECC--CCCEEEEecCCCcEEEEcCC-C---CeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC
Confidence            45789999999  89888877768899999987 2   22222223355779999999988 777776668899999987


Q ss_pred             CCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          314 KEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       314 ~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                       +......  .....+.++++.+++ +++++...++.|.+||. +++.... ...+...+.++++.+++ +++++...++
T Consensus        87 -g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~  162 (299)
T 2z2n_A           87 -GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNN  162 (299)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTT
T ss_pred             -CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCC
Confidence             3333222  234578999999987 66666666789999998 5543322 22345678999999987 6777776678


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG  470 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  470 (536)
                      .|..||. +++   ............+.+++++++|.++++...++.|.+||. ++... .+..... ...  ...++++
T Consensus       163 ~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~-~~~--~~~i~~~  233 (299)
T 2z2n_A          163 AIGRITE-SGD---ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTP-NAR--PHAITAG  233 (299)
T ss_dssp             EEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSST-TCC--EEEEEEC
T ss_pred             EEEEEcC-CCc---EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCC-CCC--ceeEEEC
Confidence            9999998 532   111112234456889999999987777667889999998 55432 2221111 112  2336788


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++|.++++...++.|.+||.. +. +..+........+..+.+ + ++.+.++.+ .+.|..++.
T Consensus       234 ~~g~l~v~~~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          234 AGIDLWFTEWGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-D-GETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             STTCEEEEETTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-C-SSCEEEEET-TTEEEEEEE
T ss_pred             CCCCEEEeccCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-c-CCCEEEEec-CCcEEEEEc
Confidence            999876666677899999984 43 333321111112234556 4 556666655 456666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=7.9e-14  Score=132.15  Aligned_cols=242  Identities=8%  Similarity=0.013  Sum_probs=165.7

Q ss_pred             ceEEEEEEecCCccEEE-EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          236 RITQMKFLPCSDVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ...+++++|  ++.+++ +...++.|.+|+....    ........+...+.++++.+++ .++++.. ++.|.+||..+
T Consensus        25 ~p~~i~~~~--~g~l~v~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDS--AGNVYVTSEGMYGRVVKLATGST----GTTVLPFNGLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECT--TCCEEEEECSSSCEEEEECC---------EECCCCSCCSCCCEEECTTC-CEEEEET-TTEEEEECTTC
T ss_pred             CccceEECC--CCCEEEEccCCCCcEEEecCCCc----ccceEeeCCcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCC
Confidence            678999999  888777 5477889999987642    2221112333567889999987 6555554 88999999887


Q ss_pred             CeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                      ....... .....+.++++.+++ +++++...++.|.+|+..+.............+.+|++.+++ +++++...++.|.
T Consensus        97 ~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~  174 (270)
T 1rwi_B           97 NNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVV  174 (270)
T ss_dssp             SCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEE
T ss_pred             ceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEE
Confidence            6554333 223578999999987 666666677899999866544332222333467889999987 5777777778999


Q ss_pred             EEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCC
Q 009380          394 IWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD  473 (536)
Q Consensus       394 iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  473 (536)
                      +||.....    .......+...+.+++++++|.++++...++.|.+||....... ..... .. .  ....++++++|
T Consensus       175 ~~~~~~~~----~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~-~~~~~-~~-~--~p~~i~~~~~g  245 (270)
T 1rwi_B          175 KLEAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPFT-GL-N--TPLAVAVDSDR  245 (270)
T ss_dssp             EECTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCE-ECCCC-SC-S--CEEEEEECTTC
T ss_pred             EEecCCCc----eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcce-eeccC-CC-C--CceeEEECCCC
Confidence            99987632    11111223367889999999977777777889999998654322 21111 11 1  22336789999


Q ss_pred             CEEEEEcCCCcEEEEcCCccccc
Q 009380          474 SCVFIGNMTRTVEVISPAQRRSV  496 (536)
Q Consensus       474 ~~l~~gs~dg~I~v~d~~~~~~~  496 (536)
                      .++++...++.|.+|+....+.+
T Consensus       246 ~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          246 TVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             CEEEEEGGGTEEEEECCCGGGSC
T ss_pred             CEEEEECCCCEEEEEcCCCcccc
Confidence            98888888999999998876543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=1.5e-13  Score=132.33  Aligned_cols=237  Identities=10%  Similarity=0.058  Sum_probs=166.8

Q ss_pred             cCCceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          233 MPGRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      +.....+++|+|  +++ +++++..++.|..|+...    .  ...+..+...+.++++++++ .++++...++.|.+||
T Consensus        26 ~~~~~eg~~~d~--~g~~l~~~~~~~~~i~~~~~~~----~--~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d   96 (296)
T 3e5z_A           26 GFTWTEGPVYVP--ARSAVIFSDVRQNRTWAWSDDG----Q--LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQR   96 (296)
T ss_dssp             CCSSEEEEEEEG--GGTEEEEEEGGGTEEEEEETTS----C--EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEEC
T ss_pred             CCccccCCeEeC--CCCEEEEEeCCCCEEEEEECCC----C--eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEc
Confidence            345578999999  887 888888899999999985    3  66677778889999999998 7777766678999999


Q ss_pred             CCCCeEEEeecC-----CCceeEEEecCCCCCEEEE----EE-------------CCCeEEEEECCCCccceeEeccCCC
Q 009380          312 AEKEVFDLVYSS-----EYAVFSLSQQPNNVNTLYF----GE-------------GQGGLNIWDVRSRKSATEWLLHEAR  369 (536)
Q Consensus       312 ~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~l~~----g~-------------~dg~i~i~d~~~~~~~~~~~~h~~~  369 (536)
                      ..++....+...     ...+..+++.|++ +++++    |+             ..+.|..+|.. ++ +..+..+...
T Consensus        97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~  173 (296)
T 3e5z_A           97 EPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVK  173 (296)
T ss_dssp             STTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSS
T ss_pred             CCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCC
Confidence            988776544321     2346789999998 67665    32             13466666655 33 4445556677


Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEeCC-CCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCc
Q 009380          370 INTIDFNPRNPNIMATSSTDGTACIWDLR-SMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN  448 (536)
Q Consensus       370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~-~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~  448 (536)
                      .+.++|+|++ +++++.+.++.|.+||+. .+... .....+..+...+.+++++++|+++++.  ++.|.+||.. ++.
T Consensus       174 ~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~-~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~  248 (296)
T 3e5z_A          174 PNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETE-YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE  248 (296)
T ss_dssp             EEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEE-EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE
T ss_pred             CccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCc-CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE
Confidence            8999999988 456878888999999987 32100 0011112345567789999999866655  7889999986 555


Q ss_pred             ceEEeccCCCCceeeeeEEEE-cCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          449 TSMIHHNNQTGRWISSFRAIW-GWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ...+.....    +.  .++| +++++.|++++.++ +.-++..+.
T Consensus       249 ~~~~~~~~~----~~--~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          249 LGRVLTPQT----TS--NLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             EEEEECSSC----CC--EEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             EEEEECCCC----ce--eEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            555543221    22  2567 58899999888764 555566555

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=2.8e-13  Score=130.43  Aligned_cols=237  Identities=10%  Similarity=-0.023  Sum_probs=164.2

Q ss_pred             CceEEeccCCCCEEEEEEecCCCC-EEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEE
Q 009380          273 NGIYLFRTHLGPISGIVTQQYCLS-KIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNI  351 (536)
Q Consensus       273 ~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i  351 (536)
                      ..+..+..+.....+++|+|++ + +++++..++.|..||..++ ......+...+.++++++++ +++++...++.|.+
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g-~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPAR-SAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLER   94 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGG-TEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCC-CEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEE
Confidence            3445555666778899999998 6 7888888999999999988 55555566789999999998 66666556789999


Q ss_pred             EECCCCccceeEec----cCCCeEEEEEecCCCCEEEEE----e-------------CCCcEEEEeCCCCCCCCCCccee
Q 009380          352 WDVRSRKSATEWLL----HEARINTIDFNPRNPNIMATS----S-------------TDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       352 ~d~~~~~~~~~~~~----h~~~i~~i~~~p~~~~~l~s~----s-------------~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                      ||..+++.......    ....++.+++.|+| +++++.    +             ..+.|..+|.. +     .....
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-----~~~~~  167 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-----TLSAP  167 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-----CEEEE
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-C-----CEEEe
Confidence            99988775433221    12356789999988 677763    2             12455556544 2     23344


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCc---ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV-NFEN---TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVE  486 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~-~~~~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~  486 (536)
                      ..+......++|+|+|+.+++.+.++.|.+||+. ++..   ...+  ....+ .  ...++++++|+++++.  ++.|.
T Consensus       168 ~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~-~--p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          168 IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPG-K--TDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSS-C--CCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCC-C--CCeEEECCCCCEEEEc--CCeEE
Confidence            4566678899999999988777788999999986 3433   1222  11111 1  1226789999866655  78899


Q ss_pred             EEcCCccccceeccCCceeeeeeeEee-cCCCCCEEEEEccCCeEE
Q 009380          487 VISPAQRRSVATLQSPYISAIPCRFHA-HPHQVGTLAGATGGGQVY  531 (536)
Q Consensus       487 v~d~~~~~~~~~l~~~~~~~~~~~~~~-~p~~~~~lasgs~Dg~v~  531 (536)
                      +|+.. ++.+..+..+..   +..++| .| ++..|+.++.+|..+
T Consensus       241 ~~~~~-g~~~~~~~~~~~---~~~~~f~~~-d~~~L~v~t~~~l~~  281 (296)
T 3e5z_A          241 VLTPD-GDELGRVLTPQT---TSNLCFGGP-EGRTLYMTVSTEFWS  281 (296)
T ss_dssp             EECTT-SCEEEEEECSSC---CCEEEEEST-TSCEEEEEETTEEEE
T ss_pred             EECCC-CCEEEEEECCCC---ceeEEEECC-CCCEEEEEcCCeEEE
Confidence            99987 667777765443   245566 45 567888888775433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.62  E-value=2.1e-13  Score=148.09  Aligned_cols=243  Identities=7%  Similarity=-0.030  Sum_probs=161.6

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCC-----eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe-------
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDG-----LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG-------  348 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~-------  348 (536)
                      |...+..++|+||| ++|+.++.++     .|++||+.++...........+.+++|+|++ +.|+.++.++.       
T Consensus       123 ~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          123 GTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG-KGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             SCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS-SEEEEEECCCCSSCCSSS
T ss_pred             CCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC-CEEEEEEECCcccccccc
Confidence            44468899999999 8877665543     8999999998876543333347789999998 77887777655       


Q ss_pred             ---------EEEEECCCCccc--eeEe--ccCCCeEEEEEecCCCCEEEEEeC-----CCcEEEEeCCC------CCCCC
Q 009380          349 ---------LNIWDVRSRKSA--TEWL--LHEARINTIDFNPRNPNIMATSST-----DGTACIWDLRS------MATDK  404 (536)
Q Consensus       349 ---------i~i~d~~~~~~~--~~~~--~h~~~i~~i~~~p~~~~~l~s~s~-----dg~i~iwdl~~------~~~~~  404 (536)
                               |++|++.+++..  ..+.  .|...+..+.|+|++. +|+.++.     +..|++||+.+      +.   
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~---  276 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGI---  276 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSS---
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCc---
Confidence                     999999887642  2222  2455688999999985 5555543     56899999976      32   


Q ss_pred             CCcceeecccCceeEEEEccCCCeEEEEeCCC----cEEEEeCCCCCc--ceEEeccCCCCceeeeeEEEEcCCCCEEEE
Q 009380          405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD----TIGIWSGVNFEN--TSMIHHNNQTGRWISSFRAIWGWDDSCVFI  478 (536)
Q Consensus       405 ~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg----~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  478 (536)
                      .....+..+...+.. .|+|+|..|+..+..+    .|.+||+.++..  ...+.... ....+..  +.|++++.++++
T Consensus       277 ~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~--~~~~~~~~lv~~  352 (710)
T 2xdw_A          277 LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEW--VACVRSNFLVLC  352 (710)
T ss_dssp             CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEE--EEEETTTEEEEE
T ss_pred             cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEE--EEEEcCCEEEEE
Confidence            123444455555554 5889998877766533    599999987642  23332211 1112332  567777778888


Q ss_pred             EcCCCc--EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEE-EE---ccCCeEEEEecC
Q 009380          479 GNMTRT--VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLA-GA---TGGGQVYVWTSD  536 (536)
Q Consensus       479 gs~dg~--I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~la-sg---s~Dg~v~iW~~d  536 (536)
                      ...++.  |.+|++.+++.+..+..+... + ..++++| ++..|+ +.   ...+.|++||++
T Consensus       353 ~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-v-~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~  413 (710)
T 2xdw_A          353 YLHDVKNTLQLHDLATGALLKIFPLEVGS-V-VGYSGQK-KDTEIFYQFTSFLSPGIIYHCDLT  413 (710)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEECCCSSE-E-EEEECCT-TCSEEEEEEECSSCCCEEEEEETT
T ss_pred             EEECCEEEEEEEECCCCCEEEecCCCCce-E-EEEecCC-CCCEEEEEEeCCCCCCEEEEEECC
Confidence            888874  667787677666777655222 2 4567787 445554 32   245789999863

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=2e-13  Score=130.10  Aligned_cols=238  Identities=10%  Similarity=0.059  Sum_probs=174.6

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS--  323 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~--  323 (536)
                      .+++|++++.++.|.+||..+    ++.+..+..+. ..+.++.+.|+| ++|+  +.++.|..||. +++....+..  
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~t----G~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~   75 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDT----KEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPA   75 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTT----TEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCT
T ss_pred             CCcEEEeeCCCCEEEEEECCC----CeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCC
Confidence            468999999999999999977    77888888776 478899999998 8887  45788999999 6766655543  


Q ss_pred             CCceeEEEecCCCCCEEEEEEC-CCeEEEEECCCCccceeEec------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVRSRKSATEWLL------HEARINTIDFNPRNPNIMATSSTDGTACIWD  396 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~~~~~------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd  396 (536)
                      ...+.++.+.+++ +++++.+. ++.|..+|. +++.+..+..      +......+.+.+++ +++++...++.|.+||
T Consensus        76 ~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~~~d  152 (276)
T 3no2_A           76 GCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVREIA  152 (276)
T ss_dssp             TCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEEEEC
T ss_pred             CccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEEEEC
Confidence            3578899999998 78888877 788888885 6777766652      11234566788877 7899999999999999


Q ss_pred             CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC-ceeeeeEEEEcCCCCE
Q 009380          397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG-RWISSFRAIWGWDDSC  475 (536)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~  475 (536)
                      .. ++     .+-.......+.++.+.++|+++++++.++.|..||..+++.+..+......+ .......+...++|.+
T Consensus       153 ~~-G~-----~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i  226 (276)
T 3no2_A          153 PN-GQ-----LLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL  226 (276)
T ss_dssp             TT-SC-----EEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred             CC-CC-----EEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence            87 53     33333334567788889999999998888899999999999988886432211 1112223556788888


Q ss_pred             EEEEc--CC------CcEEEEcC-CccccceeccC
Q 009380          476 VFIGN--MT------RTVEVISP-AQRRSVATLQS  501 (536)
Q Consensus       476 l~~gs--~d------g~I~v~d~-~~~~~~~~l~~  501 (536)
                      +++..  ..      +..+++.+ .+++.+.++..
T Consensus       227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             EEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            77763  11      13345555 46667766654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.61  E-value=9.7e-14  Score=150.33  Aligned_cols=272  Identities=8%  Similarity=-0.013  Sum_probs=166.8

Q ss_pred             CccEEEEEeCCC---cEEEEECCCCCCCCCceEEe------ccCCCCEEEEEEecCCCCEEEE-----EECCCeEEEEEC
Q 009380          247 DVRMVVAGSKLG---NITFWNLDSQQDEDNGIYLF------RTHLGPISGIVTQQYCLSKIFT-----SCYDGLIRLMDA  312 (536)
Q Consensus       247 ~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~------~~h~~~V~~l~~~~~~~~~l~s-----~s~dg~I~vwd~  312 (536)
                      +|.+++....++   .-.||......  +.....+      .+|...+..++|+||| ++|+.     |+.+..|++||+
T Consensus        78 dG~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           78 RNGRFFYVRTHKDKEKAILYWRQGES--GQEKVLLDPNGWSKDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             ETTEEEEEEECTTCSSCEEEEEESTT--SCCEEEECGGGSSSSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEET
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCC--CCcEEEEchHHhccCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEEC
Confidence            777777665543   34455443211  2222222      2455578999999999 77773     333468999999


Q ss_pred             CCCeEE-EeecCCCceeEEEecCCCCCEEEEEECCCe-------------EEEEECCCCcc----ceeEeccCCCeEEEE
Q 009380          313 EKEVFD-LVYSSEYAVFSLSQQPNNVNTLYFGEGQGG-------------LNIWDVRSRKS----ATEWLLHEARINTID  374 (536)
Q Consensus       313 ~~~~~~-~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~-------------i~i~d~~~~~~----~~~~~~h~~~i~~i~  374 (536)
                      .++... ...........++|+|++ ..|+.++.+..             |++|++.++..    +.....|...+.++.
T Consensus       155 ~tg~~~~~~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          155 DSGEWSKVDVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TTCCBCSSCCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCCcCCcccCcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            998764 111111122689999999 78888887665             99999998763    222234556789999


Q ss_pred             EecCCCCEEEEEeCCC----cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe---CCCcEEEEeCCCCC
Q 009380          375 FNPRNPNIMATSSTDG----TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS---FDDTIGIWSGVNFE  447 (536)
Q Consensus       375 ~~p~~~~~l~s~s~dg----~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s---~dg~I~iwd~~~~~  447 (536)
                      |+|+|. +|+.++.++    .|.+||..++     ....+..+...+....+ ++|.+++.+.   .++.|.+||+.++.
T Consensus       234 ~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          234 LSRDGK-YLFVYILRGWSENDVYWKRPGEK-----DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             ECTTSC-CEEEEEEETTTEEEEEEECTTCS-----SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             ECCCCC-EEEEEEeCCCCceEEEEEcCCCC-----ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            999995 454444444    5666655432     34445556666666667 5666444443   25789999998765


Q ss_pred             c---ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCEEE-
Q 009380          448 N---TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGTLA-  522 (536)
Q Consensus       448 ~---~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~la-  522 (536)
                      .   ...+.+.  ....+..  +.|+ ++.++++...|+..+||.+. .+..+..+..+....+ ..++++| ++..|+ 
T Consensus       307 ~~~~~~l~~~~--~~~~l~~--~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v-~~~~~s~-d~~~l~~  379 (695)
T 2bkl_A          307 RASWKEIVPED--SSASLLS--VSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA-SNLMGLE-DLDDAYY  379 (695)
T ss_dssp             GGGCEEEECCC--SSCEEEE--EEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE-CCCBSCT-TCSEEEE
T ss_pred             ccCCeEEecCC--CCCeEEE--EEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE-EEeecCC-CCCEEEE
Confidence            3   2222221  1222333  4566 66788888888887777554 3445555554423232 3567777 456666 


Q ss_pred             ---EEccCCeEEEEecC
Q 009380          523 ---GATGGGQVYVWTSD  536 (536)
Q Consensus       523 ---sgs~Dg~v~iW~~d  536 (536)
                         +....+.|++||++
T Consensus       380 ~~ss~~~P~~v~~~d~~  396 (695)
T 2bkl_A          380 VFTSFTTPRQIYKTSVS  396 (695)
T ss_dssp             EEEETTEEEEEEEEETT
T ss_pred             EEcCCCCCCEEEEEECC
Confidence               33455789999863

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=9.6e-14  Score=150.76  Aligned_cols=252  Identities=10%  Similarity=-0.074  Sum_probs=171.7

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCc-
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGN-  259 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~-  259 (536)
                      +|...+..+.|||||+.++...+..     +.....|.+||+..............+..++|+|  ||+.|+.++.++. 
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~-----G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wsp--Dg~~l~~~~~~~~~  194 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH--DGKGMFYNAYPQQD  194 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT--TSSEEEEEECCCCS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCcccccCcccceEEEEe--CCCEEEEEEECCcc
Confidence            3444688899999999999763211     1112379999986543322222233477899999  9999999888766 


Q ss_pred             ---------------EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-----CCeEEEEECCC-----
Q 009380          260 ---------------ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-----DGLIRLMDAEK-----  314 (536)
Q Consensus       260 ---------------v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-----dg~I~vwd~~~-----  314 (536)
                                     |++|++.+.......+.....|...+..+.|+|++ ++|+.++.     +..|.+||+.+     
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECccccccc
Confidence                           99999986421112233333456678899999999 88777765     67899999986     


Q ss_pred             -C--eEEEeecCCCceeEEEecCCCCCEEEEEECC----CeEEEEECCCCcc--ceeEeccCC--CeEEEEEecCCCCEE
Q 009380          315 -E--VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKS--ATEWLLHEA--RINTIDFNPRNPNIM  383 (536)
Q Consensus       315 -~--~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~--~~~~~~h~~--~i~~i~~~p~~~~~l  383 (536)
                       +  ....+..+...+.. .|++++ ..|++.+..    +.|.+||+.++..  ...+..|..  .+..++|++++ .++
T Consensus       274 ~~~~~~~~l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv  350 (710)
T 2xdw_A          274 TGILKWVKLIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLV  350 (710)
T ss_dssp             CSSCCCEEEECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEE
T ss_pred             CCccceEEeeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEE
Confidence             4  45555555555554 478887 555555542    3699999988752  355555544  68889999644 688


Q ss_pred             EEEeCCCc--EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe----CCCcEEEEeCCCCC
Q 009380          384 ATSSTDGT--ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS----FDDTIGIWSGVNFE  447 (536)
Q Consensus       384 ~s~s~dg~--i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s----~dg~I~iwd~~~~~  447 (536)
                      ++...|+.  |.+||+.+++    ....+..+...+..+.++|++..++...    ..++|.+||+.+++
T Consensus       351 ~~~~~~g~~~l~~~~~~~g~----~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          351 LCYLHDVKNTLQLHDLATGA----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTEEEEEEEETTTCC----EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCEEEEEEEECCCCC----EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            88888875  5667775542    2233344577888999999887665432    34689999998776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.60  E-value=4.2e-12  Score=121.80  Aligned_cols=281  Identities=8%  Similarity=-0.081  Sum_probs=186.6

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcccccc--ccCCceEEEEEEecCCccEEEEEeCC
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIAR--IMPGRITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~--~~~~~I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      ..+...+.++.++++|.+....          ..++.|..|+.. .......  .+...+.++++.+  ++.++++...+
T Consensus        11 ~~~~~~~~~i~~d~~g~l~v~~----------~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~   77 (299)
T 2z2n_A           11 TNQDTGPYGITVSDKGKVWITQ----------HKANMISCINLD-GKITEYPLPTPDAKVMCLTISS--DGEVWFTENAA   77 (299)
T ss_dssp             CSSSCCEEEEEECTTSCEEEEE----------TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT--TSCEEEEETTT
T ss_pred             CCcCCCccceEECCCCCEEEEe----------cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC--CCCEEEeCCCC
Confidence            3455778899999999877643          234677778765 2222111  2346799999999  88888887778


Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee--cCCCceeEEEecCC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPN  335 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~  335 (536)
                      +.|..|+...    ......+..+...+.++++.+++ .++++...++.|.+||. ++......  .....+.++++.++
T Consensus        78 ~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           78 NKIGRITKKG----IIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             TEEEEECTTS----CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             CeEEEECCCC----cEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            8899998762    21122222345678999999987 77777777889999999 55444332  23457899999998


Q ss_pred             CCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK  414 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~  414 (536)
                      + +++++...++.|..||. +++.... +..+...+.++++.+++ +++++...++.|.+||. ++.   ........+.
T Consensus       152 g-~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~  224 (299)
T 2z2n_A          152 N-ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT-SGE---ITEFKIPTPN  224 (299)
T ss_dssp             S-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC---EEEEECSSTT
T ss_pred             C-CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-CCc---EEEEECCCCC
Confidence            7 66666666789999998 6654332 22345668899999987 57776666789999998 542   1111122345


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ..+.+++++++|+++++...++.|.+||. ++. ...+..... ...+.  .+.+ ++|.++++.+ .+.|..++..++
T Consensus       225 ~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~-~~~~~--~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          225 ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIK-SAEPH--GICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSS-SCCEE--EEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCC-CCccc--eEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            67899999999986666657789999998 332 222322111 12223  3556 7777666655 566777776654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.59  E-value=1.2e-13  Score=149.74  Aligned_cols=252  Identities=10%  Similarity=-0.076  Sum_probs=172.8

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCce--EEEEEEecCCccEEEEEeCC
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRI--TQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I--~~v~~~p~~~~~~l~tg~~d  257 (536)
                      .+|...+..+.|||||+.++...+.     .++.+..|++||+...... ...+...+  ..++|+|  ||+.|+.++.+
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~-----~G~~~~~i~v~dl~tg~~~-~~~~~~~~~~~~~~wsp--Dg~~l~~~~~d  188 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKP-----NAADEAVLHVIDVDSGEWS-KVDVIEGGKYATPKWTP--DSKGFYYEWLP  188 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEE-----TTCSCCEEEEEETTTCCBC-SSCCBSCCTTCCCEECT--TSSEEEEEECC
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECC-----CCCceEEEEEEECCCCCCc-CCcccCcccccceEEec--CCCEEEEEEec
Confidence            3555678899999999999966321     2233468999998654432 01222223  7899999  99999999887


Q ss_pred             Cc-------------EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC----eEEEEECCCCeEEEe
Q 009380          258 GN-------------ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG----LIRLMDAEKEVFDLV  320 (536)
Q Consensus       258 g~-------------v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg----~I~vwd~~~~~~~~~  320 (536)
                      ..             |++|++.+.......+.....|...+..+.|+|+| ++|+.++.++    .|.+|+..++....+
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred             CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence            76             99999987432122344445566789999999999 7777776665    777887766766666


Q ss_pred             ecCCCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCcc--ceeEecc--CCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          321 YSSEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKS--ATEWLLH--EARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       321 ~~~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~--~~~~~~h--~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                      ..+...+....+ +++. +++.+.   .++.|.+||+.++..  ...+..+  ...+..++|+ ++ .++++...|+..+
T Consensus       268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~  343 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSE  343 (695)
T ss_dssp             EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEE
T ss_pred             ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEE
Confidence            666666666666 5663 444443   258999999987754  2444433  4568888988 34 7889999999888


Q ss_pred             EEeCCC-CCCCCCCcceeec-ccCceeEEEEccCCCeEEEEe----CCCcEEEEeCCCCCc
Q 009380          394 IWDLRS-MATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTS----FDDTIGIWSGVNFEN  448 (536)
Q Consensus       394 iwdl~~-~~~~~~~~~~~~~-~~~~v~~l~~sp~g~~l~t~s----~dg~I~iwd~~~~~~  448 (536)
                      ||.+.. ++    ....+.. ....+..++++|++..++...    ..++|++||+.+++.
T Consensus       344 l~~~~~~g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          344 VRVATLKGK----PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEETTCC----EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEeCCCC----eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            886552 21    2222222 356788889999987766433    346799999987763

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.56  E-value=6.7e-13  Score=125.72  Aligned_cols=238  Identities=5%  Similarity=-0.081  Sum_probs=163.5

Q ss_pred             ceeeeecCCCCcccc-cccccccccccccccceEEecccccCccccc-cccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380          185 GFKTCKDEGLGVGSC-DLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-RIMPGRITQMKFLPCSDVRMVVAGSKLGNITF  262 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~-~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i  262 (536)
                      ....+.++++|++.+ ..          ..++.|..|+......... ......+.++++++  ++.++++.. ++.|.+
T Consensus        25 ~p~~i~~~~~g~l~v~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~--~g~l~v~~~-~~~i~~   91 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSE----------GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG--AGTVYVTDF-NNRVVT   91 (270)
T ss_dssp             CEEEEEECTTCCEEEEEC----------SSSCEEEEECC-----EECCCCSCCSCCCEEECT--TCCEEEEET-TTEEEE
T ss_pred             CccceEECCCCCEEEEcc----------CCCCcEEEecCCCcccceEeeCCcCCcceeEECC--CCCEEEEcC-CCEEEE
Confidence            456777888887555 32          2346777777533222211 22235688999999  888776666 889999


Q ss_pred             EECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEE
Q 009380          263 WNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTL  340 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l  340 (536)
                      |+....     ....+. .....+.++++.+++ .++++...++.|.+|+..+....... .....+.++++.+++ +++
T Consensus        92 ~d~~~~-----~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~  164 (270)
T 1rwi_B           92 LAAGSN-----NQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVY  164 (270)
T ss_dssp             ECTTCS-----CCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEE
T ss_pred             EeCCCc-----eEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEE
Confidence            998752     222232 233578999999988 77777777899999987655433222 223467899999988 666


Q ss_pred             EEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEE
Q 009380          341 YFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSA  420 (536)
Q Consensus       341 ~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l  420 (536)
                      ++...++.|.+||............+...+.+|++.+++ +++++...++.|.+||.....    .......+...+.++
T Consensus       165 v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~----~~~~~~~~~~~p~~i  239 (270)
T 1rwi_B          165 VTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAV  239 (270)
T ss_dssp             EEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSC----CEECCCCSCSCEEEE
T ss_pred             EEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCc----ceeeccCCCCCceeE
Confidence            666667899999987765433323344678999999987 778877778899999986532    111111233578999


Q ss_pred             EEccCCCeEEEEeCCCcEEEEeCCCCC
Q 009380          421 YFSPSGSSLATTSFDDTIGIWSGVNFE  447 (536)
Q Consensus       421 ~~sp~g~~l~t~s~dg~I~iwd~~~~~  447 (536)
                      +++++|+++++...++.|++|++...+
T Consensus       240 ~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          240 AVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            999999988888899999999986544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.56  E-value=1.2e-11  Score=122.89  Aligned_cols=272  Identities=10%  Similarity=0.009  Sum_probs=177.6

Q ss_pred             CccEEEEEeC--CC---cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCCeEEEEE
Q 009380          247 DVRMVVAGSK--LG---NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDGLIRLMD  311 (536)
Q Consensus       247 ~~~~l~tg~~--dg---~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg~I~vwd  311 (536)
                      ++.++++...  ..   .|.+||..+    ...+..+.....+  .++++|++ ++++.+.          .++.|.+||
T Consensus        31 ~~~~~yv~~~~~~~~~~~v~v~D~~t----~~~~~~i~~g~~p--~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           31 DGRRSYINLPAHHSAIIQQWVLDAGS----GSILGHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCCEEEEeCCcccCCccEEEEEECCC----CeEEEEecCCCCC--CeEECCCC-CEEEEEeccccccccCCCCCeEEEEE
Confidence            6666666543  22   789999987    5566666654444  99999999 8888775          367899999


Q ss_pred             CCCCeEEEeecC--------CCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCcccee-EeccCCCeEEEEEecCCC
Q 009380          312 AEKEVFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNP  380 (536)
Q Consensus       312 ~~~~~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~  380 (536)
                      ..+.+.......        ......+.|+|++ ++|+++..  ++.|.++| .+++.+.. +.. ..   ++.+.|++.
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~  177 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAP  177 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCC
Confidence            988665443322        1235689999999 77887764  57899999 99988766 542 22   356677777


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcc-eeecccCc-eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccC
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPM-KVLSHKRA-VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHNN  456 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~~~~~~-v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~  456 (536)
                      ..+++.+.||.+.++|. +++....... .......+ .....+.+++..++..+..+.+.+.|+......  ..+....
T Consensus       178 ~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~  256 (373)
T 2mad_H          178 STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALS  256 (373)
T ss_pred             ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence            77888888999999999 6531100000 00011112 233566776655555557889999998654321  1121100


Q ss_pred             C----CC-ceeeeeEEEEcCCCCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-E
Q 009380          457 Q----TG-RWISSFRAIWGWDDSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-T  520 (536)
Q Consensus       457 ~----~~-~~~~~~~~~~s~~g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~  520 (536)
                      .    .+ .......+.++++++.+++...          .+.|.++|..+++.+.++....   .+..+.++| |+. .
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~-Dg~~~  332 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQ-DGGPD  332 (373)
T ss_pred             CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECC-CCCeE
Confidence            0    00 0000111457899888887653          3579999999999988886543   235678888 567 7


Q ss_pred             EEEEc-cCCeEEEEecC
Q 009380          521 LAGAT-GGGQVYVWTSD  536 (536)
Q Consensus       521 lasgs-~Dg~v~iW~~d  536 (536)
                      |++++ .++.|.|||++
T Consensus       333 l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          333 LYALSAGTEVLHIYDAG  349 (373)
T ss_pred             EEEEcCCCCeEEEEECC
Confidence            77777 58999999974

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=1.7e-12  Score=123.58  Aligned_cols=211  Identities=9%  Similarity=0.041  Sum_probs=156.1

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEecc-CCCeEE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH-EARINT  372 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h-~~~i~~  372 (536)
                      ++|++++.|+.|.+||.++++....+...  ..+.++.+.|++ ++++  +.++.|..||. +++.+..+..+ ...+.+
T Consensus         6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            78999999999999999999887776654  368999999998 7777  45778999999 89988888864 357889


Q ss_pred             EEEecCCCCEEEEEeC-CCcEEEEeCCCCCCCCCCcceee------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          373 IDFNPRNPNIMATSST-DGTACIWDLRSMATDKPEPMKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~-dg~i~iwdl~~~~~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      +.+.++| +++++.+. ++.|..+|. +++    .+..+.      .+......+.+.++|+++++...++.|.+||.. 
T Consensus        82 ~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk----~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           82 ARILPDG-NALVAWCGHPSTILEVNM-KGE----VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEECTTS-CEEEEEESTTEEEEEECT-TSC----EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cEECCCC-CEEEEecCCCCEEEEEeC-CCC----EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            9999988 67777776 777777775 332    111111      122345667889999999999999999999987 


Q ss_pred             CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCce----eeeeeeEeecCCCCCEE
Q 009380          446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYI----SAIPCRFHAHPHQVGTL  521 (536)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~----~~~~~~~~~~p~~~~~l  521 (536)
                      ++.+..+.....      .+.+...++|.++++++.++.|..+|..+++.+.++.....    ...+..+...+ ++.++
T Consensus       155 G~~~w~~~~~~~------~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~  227 (276)
T 3no2_A          155 GQLLNSVKLSGT------PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLY  227 (276)
T ss_dssp             SCEEEEEECSSC------CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEE
T ss_pred             CCEEEEEECCCC------ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEE
Confidence            888887765321      11245678999999998888999999999999888863211    11223444455 45666


Q ss_pred             EEE
Q 009380          522 AGA  524 (536)
Q Consensus       522 asg  524 (536)
                      ++.
T Consensus       228 v~~  230 (276)
T 3no2_A          228 ICN  230 (276)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=5.7e-11  Score=113.90  Aligned_cols=277  Identities=9%  Similarity=-0.030  Sum_probs=181.1

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...+.++++.+  ++.++++...++.|.+|+.. .   ......+..+...+.++++.+++ .++++...++.|..||..
T Consensus        19 ~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           19 DSGPYGITSSE--DGKVWFTQHKANKISSLDQS-G---RIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TCCEEEEEECT--TSCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             CCCcceeeECC--CCCEEEEcCCCCeEEEECCC-C---ceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC
Confidence            35788999999  89888887778999999977 2   12222233344678999999988 777766668899999988


Q ss_pred             CCeEEEeec--CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee-EeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          314 KEVFDLVYS--SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE-WLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       314 ~~~~~~~~~--~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~-~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                       +.......  ....+.++++.+++ +++++...++.|..||.. ++.... +......+.++++.+++ +++++...++
T Consensus        92 -g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~  167 (300)
T 2qc5_A           92 -GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNN  167 (300)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTT
T ss_pred             -CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEecCCC
Confidence             55443321  34678999999887 666665557899999987 544321 22245678999999987 5666666678


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG  470 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  470 (536)
                      .|..||. +++   ........+...+..++++++|.++++....+.|.+||. ++.... +..... ..  ....++++
T Consensus       168 ~i~~~~~-~g~---~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~-~~--~~~~i~~d  238 (300)
T 2qc5_A          168 SIGRITN-TGK---LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE-YDIPTP-NA--RPHAITAG  238 (300)
T ss_dssp             EEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSST-TC--CEEEEEEC
T ss_pred             eEEEECC-CCc---EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE-EECCCC-CC--CceEEEEC
Confidence            8999998 432   111111134457889999999987776666778999998 443222 211111 11  22336788


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++|.++++...++.|..|+.. ++.. .+........+..+...+ ++.++++.. . .|..++.
T Consensus       239 ~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          239 KNSEIWFTEWGANQIGRITND-NTIQ-EYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             STTCEEEEETTTTEEEEECTT-SCEE-EEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEEEE
T ss_pred             CCCCEEEeccCCCeEEEECCC-CcEE-EEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEeCC
Confidence            999877766667899999984 4322 222111111234566776 456555544 4 7776664

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.52  E-value=2.4e-11  Score=120.75  Aligned_cols=264  Identities=11%  Similarity=0.004  Sum_probs=174.5

Q ss_pred             eEEecccccCccccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC----
Q 009380          216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH----  281 (536)
Q Consensus       216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h----  281 (536)
                      .|.++|..... .+.....+....++++|  |+++|+++.          .++.|.+||..+    ...+..+...    
T Consensus        48 ~v~v~D~~t~~-~~~~i~~g~~p~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t----~~~~~~i~~~~~~~  120 (373)
T 2mad_H           48 QQWVLDAGSGS-ILGHVNGGFLPNPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVFDPVT----FLPIADIELPDAPR  120 (373)
T ss_pred             EEEEEECCCCe-EEEEecCCCCCCeEECC--CCCEEEEEeccccccccCCCCCeEEEEECCC----CcEEEEEECCCccc
Confidence            67778764322 22222233333999999  999988876          367899999986    4444443221    


Q ss_pred             ---CCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC
Q 009380          282 ---LGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR  355 (536)
Q Consensus       282 ---~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~  355 (536)
                         ...-..+.|+|++ ++|+.+..  ++.|.++| .+++.... ......   +.+.|.+...+++.+.||.+.++|. 
T Consensus       121 ~~~g~~p~~~~~spDG-~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-  194 (373)
T 2mad_H          121 FDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-  194 (373)
T ss_pred             cccCCCccceEECCCC-CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-
Confidence               1234578999999 88888774  58899999 98877655 544332   4556777677788889999999999 


Q ss_pred             CCccceeEe-----ccCCC-eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeEEE
Q 009380          356 SRKSATEWL-----LHEAR-INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHSAY  421 (536)
Q Consensus       356 ~~~~~~~~~-----~h~~~-i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~l~  421 (536)
                      +++.+....     ....+ .....+.+++..++++. ..+.+.+.|+..............        -.......+.
T Consensus       195 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          195 AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence            877653321     11122 12345666664444444 678999999875421100001000        0123345588


Q ss_pred             EccCCCeEEEEeC----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEEEEc
Q 009380          422 FSPSGSSLATTSF----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVEVIS  489 (536)
Q Consensus       422 ~sp~g~~l~t~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~v~d  489 (536)
                      ++|+++.++++..          .+.|.++|..+++.+..+....      ....+.|+|||+ .+++++ .++.|.|||
T Consensus       274 ~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD  347 (373)
T 2mad_H          274 YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH------DVDAISVAQDGGPDLYALSAGTEVLHIYD  347 (373)
T ss_pred             ECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            9999988877653          3579999999998888774322      122377999999 788877 489999999


Q ss_pred             CCccccceec
Q 009380          490 PAQRRSVATL  499 (536)
Q Consensus       490 ~~~~~~~~~l  499 (536)
                      ..+++.+.++
T Consensus       348 ~~t~~vv~~i  357 (373)
T 2mad_H          348 AGAGDQDQST  357 (373)
T ss_pred             CCCCCEEeee
Confidence            9999888773

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.51  E-value=1.4e-11  Score=119.16  Aligned_cols=242  Identities=12%  Similarity=0.066  Sum_probs=159.6

Q ss_pred             ccCCCCEEEEEEecCCCCEEEE-------EECCCeEEEEECCCCeEEEeec-----CCCceeEEEecCC-CCCEEEEEEC
Q 009380          279 RTHLGPISGIVTQQYCLSKIFT-------SCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSLSQQPN-NVNTLYFGEG  345 (536)
Q Consensus       279 ~~h~~~V~~l~~~~~~~~~l~s-------~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~-~~~~l~~g~~  345 (536)
                      ...-....+++|.+++ .++++       ...++.|.+||..++....+..     +...+.++++.++ +  .+++++.
T Consensus        14 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g--~l~v~~~   90 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDAN--QLFVADM   90 (314)
T ss_dssp             ECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSS--EEEEEET
T ss_pred             hccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCC--cEEEEEC
Confidence            3334456899999887 77777       5778999999988877654433     3467899999998 5  4555555


Q ss_pred             CCeEEEEECCCCcccee-Eec----cCCCeEEEEEecCCCCEEEEEeCC---------------CcEEEEeCCCCCCCCC
Q 009380          346 QGGLNIWDVRSRKSATE-WLL----HEARINTIDFNPRNPNIMATSSTD---------------GTACIWDLRSMATDKP  405 (536)
Q Consensus       346 dg~i~i~d~~~~~~~~~-~~~----h~~~i~~i~~~p~~~~~l~s~s~d---------------g~i~iwdl~~~~~~~~  405 (536)
                      .+.|.+||.. ++.... ...    ....+.++++.+++ +++++...+               +.|..||.. +     
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-----  162 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-----  162 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-----
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-C-----
Confidence            5589999988 654322 211    12358899999987 566666544               467777754 2     


Q ss_pred             CcceeecccCceeEEEEc----cCCCeEEEE-eCCCcEEEEeCC-CCCcc--eEEeccCCCC-ceeeeeEEEEcCCCCEE
Q 009380          406 EPMKVLSHKRAVHSAYFS----PSGSSLATT-SFDDTIGIWSGV-NFENT--SMIHHNNQTG-RWISSFRAIWGWDDSCV  476 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~s----p~g~~l~t~-s~dg~I~iwd~~-~~~~~--~~~~~~~~~~-~~~~~~~~~~s~~g~~l  476 (536)
                      .......+......++|+    |+++.|+++ ..++.|.+||.. ++...  ..+....... ..  ...++++++|.++
T Consensus       163 ~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--p~~i~~d~~G~l~  240 (314)
T 1pjx_A          163 QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG--ADGMDFDEDNNLL  240 (314)
T ss_dssp             CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE--EEEEEEBTTCCEE
T ss_pred             CEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC--CCceEECCCCCEE
Confidence            223333444567889999    999765555 567899999976 33211  1111111110 11  2236789999888


Q ss_pred             EEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEEEEccCCeEEEEecC
Q 009380          477 FIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~lasgs~Dg~v~iW~~d  536 (536)
                      ++...++.|.+||..+++.+..+..+...  +..++++| ++. ++++...++.|..|+++
T Consensus       241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~--~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          241 VANWGSSHIEVFGPDGGQPKMRIRCPFEK--PSNLHFKP-QTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEETTTEEEEECTTCBSCSEEEECSSSC--EEEEEECT-TSSEEEEEETTTTEEEEEECS
T ss_pred             EEEcCCCEEEEEcCCCCcEeEEEeCCCCC--ceeEEECC-CCCEEEEEeCCCCeEEEEeCC
Confidence            88777889999999877776666544322  24567777 557 55566677899999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=9.3e-12  Score=125.50  Aligned_cols=240  Identities=4%  Similarity=-0.016  Sum_probs=163.7

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC--eEEEEEC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG--LIRLMDA  312 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg--~I~vwd~  312 (536)
                      .....|+|+|  ++.++++...++.|++||..+    ......... ..... ++|++++ +.|+++..++  .|.+|+.
T Consensus       131 ~~P~~la~d~--~g~lyv~d~~~~~I~~id~~~----g~~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~  201 (409)
T 3hrp_A          131 KYMWGIAAVG--NNTVLAYQRDDPRVRLISVDD----NKVTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMK  201 (409)
T ss_dssp             CCEEEEEECS--TTEEEEEETTTTEEEEEETTT----TEEEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEG
T ss_pred             CCceEEEEeC--CCCEEEEecCCCcEEEEECCC----CEEEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEc
Confidence            4678999999  899888888889999999985    333333333 23333 9999998 8888888866  7999998


Q ss_pred             CCCeEEEee----c-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee----EeccCCCe--EEEEEecCCCC
Q 009380          313 EKEVFDLVY----S-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE----WLLHEARI--NTIDFNPRNPN  381 (536)
Q Consensus       313 ~~~~~~~~~----~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~----~~~h~~~i--~~i~~~p~~~~  381 (536)
                      ..+......    . ....+.+++++|++ ..|+++..++.|+.||..++.....    ..++...-  ..++|+|++..
T Consensus       202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~  280 (409)
T 3hrp_A          202 ASGWAPTRIGQLGSTFSGKIGAVALDETE-EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN  280 (409)
T ss_dssp             GGTTCEEEEEECCTTSCSCCCBCEECTTS-SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred             CCCceeEEeeeccchhcCCcEEEEEeCCC-CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence            765432222    2 44677899999955 3566677788999999987653221    11222222  39999996557


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc---------------CceeEEEEccCCCeEEEEe-CCCcEEEEeCCC
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHK---------------RAVHSAYFSPSGSSLATTS-FDDTIGIWSGVN  445 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~---------------~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~  445 (536)
                      ++++-..++.|+.||...      ....+.++.               .....++++|+|+++++-+ .++.|+.||+.+
T Consensus       281 lyv~d~~~~~I~~~~~~g------~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~  354 (409)
T 3hrp_A          281 FYMSDQNLSSVYKITPDG------ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD  354 (409)
T ss_dssp             EEEEETTTTEEEEECTTC------CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred             EEEEeCCCCEEEEEecCC------CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence            777777789999999764      122222221               3478999999999777777 789999999877


Q ss_pred             CCcceEEeccCCCC---------ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          446 FENTSMIHHNNQTG---------RWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       446 ~~~~~~~~~~~~~~---------~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      +.......+....+         .......++++++|.++++-..++.|+.+++
T Consensus       355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            65443333311100         1112334678888877777777888887764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=9.3e-12  Score=120.51  Aligned_cols=240  Identities=9%  Similarity=0.043  Sum_probs=160.4

Q ss_pred             ceEEEEEEecCCccEEEE-------EeCCCcEEEEECCCCCCCCCceEEec-----cCCCCEEEEEEecCCCCEEEEEEC
Q 009380          236 RITQMKFLPCSDVRMVVA-------GSKLGNITFWNLDSQQDEDNGIYLFR-----THLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~t-------g~~dg~v~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      ...+++|++  ++.++++       +..++.|.+|+..+    +.. ..+.     ++...+.++++++++ ..|+.++.
T Consensus        19 ~~~~~~~~~--~g~l~~~~~~~~~~~~~~~~i~~~d~~~----g~~-~~~~~~~~~~~~~~~~~i~~~~~~-g~l~v~~~   90 (314)
T 1pjx_A           19 GAEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKT----GKK-TVICKPEVNGYGGIPAGCQCDRDA-NQLFVADM   90 (314)
T ss_dssp             TCEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTT----CCE-EEEECCEETTEECCEEEEEECSSS-SEEEEEET
T ss_pred             CccCceECC--CCCEEEEEeccccCCCCCCEEEEEeCCC----CcE-EEEEecccCCCCCCCceEEEecCC-CcEEEEEC
Confidence            467899998  8888888       57788999999875    222 2222     255678999999983 24455555


Q ss_pred             CCeEEEEECCCCeEEEe-ecC-----CCceeEEEecCCCCCEEEEEECC---------------CeEEEEECCCCcccee
Q 009380          304 DGLIRLMDAEKEVFDLV-YSS-----EYAVFSLSQQPNNVNTLYFGEGQ---------------GGLNIWDVRSRKSATE  362 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~-~~~-----~~~i~~l~~~~~~~~~l~~g~~d---------------g~i~i~d~~~~~~~~~  362 (536)
                      .+.|.+||.. +....+ ...     ...+.++++.+++ +++++...+               +.|..||.. ++.. .
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~  166 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-Q  166 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-E
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-E
Confidence            5579999998 766544 321     2358899999988 666655544               578888765 4433 3


Q ss_pred             EeccCCCeEEEEEe----cCCCCEEEEEeCCCcEEEEeCC-CCCCCCCCcc-eeeccc-CceeEEEEccCCCeEEEEeCC
Q 009380          363 WLLHEARINTIDFN----PRNPNIMATSSTDGTACIWDLR-SMATDKPEPM-KVLSHK-RAVHSAYFSPSGSSLATTSFD  435 (536)
Q Consensus       363 ~~~h~~~i~~i~~~----p~~~~~l~s~s~dg~i~iwdl~-~~~~~~~~~~-~~~~~~-~~v~~l~~sp~g~~l~t~s~d  435 (536)
                      +..+......++|+    |++..++++...++.|.+||+. .+........ ....+. ..+..++++++|+++++...+
T Consensus       167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence            33344567899999    9874455555667899999976 2210000011 111232 567889999999988887788


Q ss_pred             CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE-cCCCcEEEEcCCc
Q 009380          436 DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG-NMTRTVEVISPAQ  492 (536)
Q Consensus       436 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-s~dg~I~v~d~~~  492 (536)
                      +.|.+||..+++....+....   ..+  ..++|+++++.|+++ ..++.|..|++..
T Consensus       247 ~~i~~~d~~~g~~~~~~~~~~---~~~--~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          247 SHIEVFGPDGGQPKMRIRCPF---EKP--SNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECSS---SCE--EEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEcCCCCcEeEEEeCCC---CCc--eeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            899999988676665554221   222  336689999955554 5567899998764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=5.1e-12  Score=137.80  Aligned_cols=274  Identities=9%  Similarity=-0.019  Sum_probs=162.4

Q ss_pred             CccEEEEEeCCCc---EEEEECCCC---CCCCCceE----EeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEE
Q 009380          247 DVRMVVAGSKLGN---ITFWNLDSQ---QDEDNGIY----LFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMD  311 (536)
Q Consensus       247 ~~~~l~tg~~dg~---v~iwd~~~~---~~~~~~~~----~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd  311 (536)
                      +|.+++....++.   -.+|.....   ......+.    .-.+|...+..+.|+||| ++|+.++.+     ..|++||
T Consensus       117 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          117 RGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             ETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEE
T ss_pred             ECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEE
Confidence            7877776654433   555654321   11011111    112343468899999999 777766543     3699999


Q ss_pred             CCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--------------eEEEEECCCCccc--eeEe--ccCCCeEEE
Q 009380          312 AEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--------------GLNIWDVRSRKSA--TEWL--LHEARINTI  373 (536)
Q Consensus       312 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--------------~i~i~d~~~~~~~--~~~~--~h~~~i~~i  373 (536)
                      +.++...........+..++|+|+  +.|+.+..++              .|++|++.++...  ..+.  .+...+.++
T Consensus       196 l~tg~~~~~~~~~~~~~~~~wspD--~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          196 VADGKPLADELKWVKFSGLAWLGN--DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             TTTCCEEEEEEEEEESCCCEESTT--SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCCCCCccCCCceeccEEEECC--CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            999876544322223468899998  4566555544              3899999877632  2222  233458899


Q ss_pred             EEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCC-cceeecccCceeEEEEccCCCeEEEEeCC----CcEEEEeC
Q 009380          374 DFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPE-PMKVLSHKRAVHSAYFSPSGSSLATTSFD----DTIGIWSG  443 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~-~~~~~~~~~~v~~l~~sp~g~~l~t~s~d----g~I~iwd~  443 (536)
                      .|+|+|. +|+..+.+     ..|++||+.++.   .. ...+..+...+.... +|+|..|+..+.+    +.|.+||+
T Consensus       274 ~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~---~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          274 SVSSDGR-WVVITSSEGTDPVNTVHVARVTNGK---IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EECTTSC-EEEEEEECTTCSCCEEEEEEEETTE---ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EECCCCC-EEEEEEEccCCCcceEEEEECCCCC---CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence            9999984 55555543     379999987641   02 334444554555543 4889888887754    45999998


Q ss_pred             CCCC-cceE-EeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC-ccccceeccCCceeeeeeeEeecCCCCCE
Q 009380          444 VNFE-NTSM-IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA-QRRSVATLQSPYISAIPCRFHAHPHQVGT  520 (536)
Q Consensus       444 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~-~~~~~~~l~~~~~~~~~~~~~~~p~~~~~  520 (536)
                      .++. .... +.+..   ..+..  +.|+ ++.++++...++..+||.+. .+..+..+..+....+ ..++++| ++..
T Consensus       349 ~~~~~~~~~l~~~~~---~~l~~--~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v-~~~~~s~-d~~~  420 (741)
T 1yr2_A          349 SGSTPRFDTVVPESK---DNLES--VGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSA-SGLSGRP-GDRH  420 (741)
T ss_dssp             SSSSCEEEEEECCCS---SEEEE--EEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEE-EEEECCB-TCSC
T ss_pred             CCCccccEEEecCCC---CeEEE--EEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEE-EEeecCC-CCCE
Confidence            7752 2222 22211   12222  4455 55677888888876666543 3445555654322222 4567777 4454


Q ss_pred             EE-E---EccCCeEEEEecC
Q 009380          521 LA-G---ATGGGQVYVWTSD  536 (536)
Q Consensus       521 la-s---gs~Dg~v~iW~~d  536 (536)
                      |+ +   ....+.|++||++
T Consensus       421 l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          421 AYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             EEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEcCCCCCCEEEEEECC
Confidence            54 3   3355889999863

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.47  E-value=2e-11  Score=120.10  Aligned_cols=273  Identities=12%  Similarity=0.113  Sum_probs=180.9

Q ss_pred             EEEecCCccEEEEEeC-----CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCC
Q 009380          241 KFLPCSDVRMVVAGSK-----LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDG  305 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~-----dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg  305 (536)
                      ...|  ++..+++...     ++.|.+.|..+    ...+..+..-..+ . +.++|++ ++++.+.          .++
T Consensus        39 ~~~p--d~~~vyV~~~~~~~~~~~V~ViD~~t----~~v~~~I~vG~~P-~-va~spDG-~~lyVan~~~~r~~~G~~~~  109 (386)
T 3sjl_D           39 APAP--DARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGMIDGGFLP-N-PVVADDG-SFIAHASTVFSRIARGERTD  109 (386)
T ss_dssp             CCCC--CTTEEEEEECGGGCSSEEEEEEETTT----TEEEEEEEECSSC-E-EEECTTS-SCEEEEEEEEEETTEEEEEE
T ss_pred             ccCC--CCCEEEEEcCcccCCCCEEEEEECCC----CeEEEEEECCCCC-c-EEECCCC-CEEEEEcccccccccCCCCC
Confidence            3346  7777777655     57999999987    6777777655555 4 9999999 7776665          367


Q ss_pred             eEEEEECCCCeEEEeecC--------CCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEE
Q 009380          306 LIRLMDAEKEVFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDF  375 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~  375 (536)
                      .|.+||..+.+.......        ......+.|+|++ ++++++..  ++.|.++|+.+++.+.++....    |..+
T Consensus       110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~  184 (386)
T 3sjl_D          110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI  184 (386)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred             EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence            899999999876554422        2356789999999 77887764  6899999999999988886322    1233


Q ss_pred             ecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCcceee-cccCce-eEEEEc-cCCCeEEEEeCCCcEEEEeCCCCCc--c
Q 009380          376 NPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKVL-SHKRAV-HSAYFS-PSGSSLATTSFDDTIGIWSGVNFEN--T  449 (536)
Q Consensus       376 ~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~-~~~~~v-~~l~~s-p~g~~l~t~s~dg~I~iwd~~~~~~--~  449 (536)
                      .|.+.+.+++.+.||.+.+.++.. ++... ...... .-..++ ....|. ++|++++ .+.+|.|.++|+.+...  .
T Consensus       185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~-~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~  262 (386)
T 3sjl_D          185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL  262 (386)
T ss_dssp             EEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC
T ss_pred             ecCCCceeEEECCCCCEEEEECCCCCeEEE-eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee
Confidence            465667788888899999999976 32100 000000 011222 234664 5776544 56689999999875542  2


Q ss_pred             eEEecc---------CCCCceeeeeEEEEcCCCCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeee
Q 009380          450 SMIHHN---------NQTGRWISSFRAIWGWDDSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       450 ~~~~~~---------~~~~~~~~~~~~~~s~~g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      ..+...         .+.+.  .  .+.++++++.+++...          .+.|.++|..+++.+..+...+   -...
T Consensus       263 ~~~~~~~~~~~~~g~~p~g~--q--~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~---~~~~  335 (386)
T 3sjl_D          263 PAVEALTEAERADGWRPGGW--Q--QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH---EIDS  335 (386)
T ss_dssp             CCEESSCHHHHHTTEEECSS--S--CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECE
T ss_pred             cceeccccccccccccCCCc--c--eeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC---Ccce
Confidence            222100         01110  1  1446888888887643          2579999999999999887543   2246


Q ss_pred             EeecCCCCCEEEE-EccCCeEEEEecC
Q 009380          511 FHAHPHQVGTLAG-ATGGGQVYVWTSD  536 (536)
Q Consensus       511 ~~~~p~~~~~las-gs~Dg~v~iW~~d  536 (536)
                      +.++|....+|++ ...++.|.|+|..
T Consensus       336 lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          336 INVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             EEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            7778843235655 4568999999863

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.47  E-value=1.5e-11  Score=123.19  Aligned_cols=274  Identities=11%  Similarity=0.050  Sum_probs=181.9

Q ss_pred             CccEEEEEeC-C----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCCeEEEEE
Q 009380          247 DVRMVVAGSK-L----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDGLIRLMD  311 (536)
Q Consensus       247 ~~~~l~tg~~-d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg~I~vwd  311 (536)
                      ++..+++... +    +.|.++|+.+    .+.+..+..-..+  .+.++|++ ++|+.+.          .++.|.++|
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t----~~vv~~I~vG~~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGST----GRILGMTDGGFLP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTT----TEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCC----CEEEEEEECCCCC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEE
Confidence            4454444433 2    6999999998    6777777655556  89999999 7776665          467899999


Q ss_pred             CCCCeEEEeecC--------CCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          312 AEKEVFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       312 ~~~~~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      ..+.+.......        ......+.|+|++ ++++++..  ++.|.++|+.+++.+.++....    +....|++..
T Consensus       156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~  230 (426)
T 3c75_H          156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPT  230 (426)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETT
T ss_pred             CCCCcEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCc
Confidence            999876544322        2346688999999 78888764  5789999999999888876322    1345565657


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc-eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEeccC--
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA-VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHNN--  456 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~-v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~~--  456 (536)
                      .+++.+.||.+.+.++..++........+.....+ ...+.|.+++..++..+..+.|.+.|+......  ..+....  
T Consensus       231 ~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~  310 (426)
T 3c75_H          231 VFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA  310 (426)
T ss_dssp             EEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence            77788889999988985432100000000001111 224678999888888788899999998654321  1111000  


Q ss_pred             --CCCce-eeeeEEEEcCCCCEEEEEcC----------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEE
Q 009380          457 --QTGRW-ISSFRAIWGWDDSCVFIGNM----------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLA  522 (536)
Q Consensus       457 --~~~~~-~~~~~~~~s~~g~~l~~gs~----------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~la  522 (536)
                        ..+.. .....+.+++++..+++...          .+.|.++|..+.+.+.++....   .+..+.++| ++. +|+
T Consensus       311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~---~P~gia~sp-Dg~~~ly  386 (426)
T 3c75_H          311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH---EIDSINVSQ-DAEPLLY  386 (426)
T ss_dssp             TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE---EECEEEECC-SSSCEEE
T ss_pred             ccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC---CcCeEEEcc-CCCEEEE
Confidence              00000 00001467899888777643          3579999999999999986432   345788888 556 777


Q ss_pred             EEc-cCCeEEEEecC
Q 009380          523 GAT-GGGQVYVWTSD  536 (536)
Q Consensus       523 sgs-~Dg~v~iW~~d  536 (536)
                      ++. .++.|.|+|++
T Consensus       387 v~n~~s~~VsVID~~  401 (426)
T 3c75_H          387 ALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEcCCCCeEEEEECC
Confidence            777 59999999974

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=2.7e-10  Score=109.09  Aligned_cols=275  Identities=8%  Similarity=-0.064  Sum_probs=179.3

Q ss_pred             cccceeeeecCCCCcccccccccccccccccccceEEecccccCccccc--cccCCceEEEEEEecCCccEEEEEeCCCc
Q 009380          182 EFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA--RIMPGRITQMKFLPCSDVRMVVAGSKLGN  259 (536)
Q Consensus       182 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~--~~~~~~I~~v~~~p~~~~~~l~tg~~dg~  259 (536)
                      ......++.+.++|.+....          ..++.|..|+.. ......  ......+.++++.+  ++.++++...++.
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~----------~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~   84 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQ----------HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANK   84 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEE----------TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT--TSCEEEEETTTTE
T ss_pred             CCCCcceeeECCCCCEEEEc----------CCCCeEEEECCC-CceEEEECCCCCCcceeEEECC--CCCEEEEecCCCe
Confidence            34567788888888876643          234567777754 221111  11236789999998  8888887777788


Q ss_pred             EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ec-CCCceeEEEecCCCC
Q 009380          260 ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YS-SEYAVFSLSQQPNNV  337 (536)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~-~~~~i~~l~~~~~~~  337 (536)
                      |..||...    .............+.++++.+++ .++++...++.|..||.. +..... .. ....+.++++.+++ 
T Consensus        85 v~~~d~~g----~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-  157 (300)
T 2qc5_A           85 IGKLSKKG----GFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-  157 (300)
T ss_dssp             EEEECTTS----CEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-
T ss_pred             EEEECCCC----CeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-
Confidence            99998762    22222333344678999999987 777776668899999988 554432 22 34678999999988 


Q ss_pred             CEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC
Q 009380          338 NTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR  415 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~  415 (536)
                      +++++...++.|..||. +++... +.  .+...+.++++.+++ +++++....+.|.+||. ++.   ........+..
T Consensus       158 ~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~---~~~~~~~~~~~  230 (300)
T 2qc5_A          158 ALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITT-TGE---ISEYDIPTPNA  230 (300)
T ss_dssp             SEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCC---EEEEECSSTTC
T ss_pred             CEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcC-CCc---EEEEECCCCCC
Confidence            65555555789999998 555432 32  344578999999977 67776666778999998 321   11111123456


Q ss_pred             ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          416 AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       416 ~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      .+.+++++++|+++++...++.|..||. ++.. ..+....... .  ...+.++++|.++++.. + .|..++.
T Consensus       231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~-~--~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENA-E--PHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             CEEEEEECSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTC-C--CCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CceEEEECCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCC-c--cceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            7889999999987666666789999998 3322 2222111111 1  22356788887655554 4 6766664

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=3.8e-12  Score=138.83  Aligned_cols=250  Identities=8%  Similarity=0.008  Sum_probs=161.5

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCc-
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGN-  259 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~-  259 (536)
                      +|...+..+.|||||+.++...+..     +.....|++||+..........+...+..++|+|  | +.|+.++.++. 
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wsp--D-~~l~~~~~~~~~  231 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDG-----GSDWRTVKFVGVADGKPLADELKWVKFSGLAWLG--N-DALLYSRFAEPK  231 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEET-----TCSEEEEEEEETTTCCEEEEEEEEEESCCCEEST--T-SEEEEEECCCC-
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCC-----CCceEEEEEEECCCCCCCCccCCCceeccEEEEC--C-CEEEEEEecCcc
Confidence            3434678899999999999763211     1111468999986544322112222346899999  8 88888876654 


Q ss_pred             -------------EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-----eEEEEECCCC--e-EE
Q 009380          260 -------------ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-----LIRLMDAEKE--V-FD  318 (536)
Q Consensus       260 -------------v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~vwd~~~~--~-~~  318 (536)
                                   |++|++.+.......+.....|...+..+.|+|+| ++|+..+.++     .|.+||+.++  . ..
T Consensus       232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          232 EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             -------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred             cccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence                         88999876421112333333444468999999999 8887777544     8999999877  5 55


Q ss_pred             EeecCCCceeEEEecCCCCCEEEEEEC----CCeEEEEECCCCc-c-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          319 LVYSSEYAVFSLSQQPNNVNTLYFGEG----QGGLNIWDVRSRK-S-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       319 ~~~~~~~~i~~l~~~~~~~~~l~~g~~----dg~i~i~d~~~~~-~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      .+..+...+.... .|++ ..|++.+.    ++.|.+||+.++. . ...+..+...+..+.|.  +..++++...|+..
T Consensus       311 ~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~  386 (741)
T 1yr2_A          311 ALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKS  386 (741)
T ss_dssp             EEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEE
T ss_pred             EecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEE
Confidence            5655555555543 4777 56666665    3569999998752 3 33333444556778887  33688888889887


Q ss_pred             EEEeCCC-CCCCCCCcceee-cccCceeEEEEccCCCeEEEEe----CCCcEEEEeCCCCC
Q 009380          393 CIWDLRS-MATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTS----FDDTIGIWSGVNFE  447 (536)
Q Consensus       393 ~iwdl~~-~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s----~dg~I~iwd~~~~~  447 (536)
                      +||.+.. +.    ....+. .+...+..+.++|++..|+...    ..++|++||+.+++
T Consensus       387 ~l~~~~~~g~----~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          387 QVLAFDLDGK----PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEETTSC----EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEeCCCC----ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7775542 21    222222 2466788999999987665332    34689999998765

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=1.1e-10  Score=115.27  Aligned_cols=177  Identities=15%  Similarity=0.108  Sum_probs=130.1

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCC-------CCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQ-------DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~-------~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      +++.+++++  ...++++|+.+ .+.+|++....       ....... ...+.. |..++|  ++ .+|+++ .++.|+
T Consensus        39 ~~nlLais~--~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISN--SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG-DQVLVS-TRNALY  109 (388)
T ss_dssp             CCBCEEEET--TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET-TEEEEE-ESSEEE
T ss_pred             cccEEEEcC--CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC-CEEEEE-cCCcEE
Confidence            699999999  88999999987 56669875321       0011112 224666 999999  76 888888 889999


Q ss_pred             EEECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          309 LMDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       309 vwd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +||+.+... .....+...+.++.+.+.   .+++++.||.|.+||+.++....    +...|+|++|+|.|   ++.|.
T Consensus       110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG---~~vg~  179 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ---LAVLL  179 (388)
T ss_dssp             EEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE---EEEEE
T ss_pred             EEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc---eEEEE
Confidence            999876432 234456677888877654   38889999999999999877542    45689999999977   67788


Q ss_pred             CCCcEEEEeCCCCCCCCCCccee------e---cccCceeEEEEccCCCeEEEEe
Q 009380          388 TDGTACIWDLRSMATDKPEPMKV------L---SHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~------~---~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      .||.+++|+........  ...+      .   +|...|.+|.|.+++.++++-.
T Consensus       180 ~dg~i~~~~~~~~~~~~--k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEK--QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             TTSCEEEEEEETTEEEE--EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCcEEEEcCCCccccc--cceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            89999999887642100  1111      1   3788999999999998887743

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.41  E-value=1.4e-10  Score=116.91  Aligned_cols=244  Identities=7%  Similarity=-0.008  Sum_probs=163.2

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccc
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSA  360 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~  360 (536)
                      .....|+|++++ .++++...++.|++||..++....+........ ++|++++ +.|+++..++  .|.+||...+...
T Consensus       131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCcee
Confidence            457899999998 766776677999999999887776655544444 9999998 7888887765  8999998766544


Q ss_pred             eeE----eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce---eecccCce--eEEEEccC-CCeEE
Q 009380          361 TEW----LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK---VLSHKRAV--HSAYFSPS-GSSLA  430 (536)
Q Consensus       361 ~~~----~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~---~~~~~~~v--~~l~~sp~-g~~l~  430 (536)
                      ..+    ......+.+++++|++.. |+.+..++.|+.||..+..   .....   ..++...-  ..++|+|+ +.+++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~---~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQE---VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCC---EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCC---EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            344    224566789999995534 4447778899999988642   01110   11222222  39999995 66666


Q ss_pred             EEeCCCcEEEEeCCCCCcceEEeccCCCC---------ceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCccccceecc
Q 009380          431 TTSFDDTIGIWSGVNFENTSMIHHNNQTG---------RWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~~~~~~~l~  500 (536)
                      +-..++.|+.|+.... ...........+         .......++++++|.++++-+ .++.|+.|+..++.. .++.
T Consensus       284 ~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~  361 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA  361 (409)
T ss_dssp             EETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE
T ss_pred             EeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe
Confidence            6667889999997543 222222210000         011233477899999888877 889999999777643 3333


Q ss_pred             CCc-------------eeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          501 SPY-------------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       501 ~~~-------------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++.             .-..+..+++.|. +.++++-..+++|+.+++|
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEEC
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEeC
Confidence            220             0123457888884 6888888889999998875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.40  E-value=3.7e-11  Score=118.18  Aligned_cols=269  Identities=8%  Similarity=-0.023  Sum_probs=175.8

Q ss_pred             cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC--
Q 009380          214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH--  281 (536)
Q Consensus       214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h--  281 (536)
                      ++.|.+.|...... +.....+.--.++++|  ||++|++++          .++.|.+||..+    ...+..+.-.  
T Consensus        58 ~~~V~ViD~~t~~v-~~~I~vG~~P~va~sp--DG~~lyVan~~~~r~~~G~~~~~VsviD~~t----~~v~~~I~v~~g  130 (386)
T 3sjl_D           58 VTQQFVIDGEAGRV-IGMIDGGFLPNPVVAD--DGSFIAHASTVFSRIARGERTDYVEVFDPVT----LLPTADIELPDA  130 (386)
T ss_dssp             SEEEEEEETTTTEE-EEEEEECSSCEEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTT----CCEEEEEEETTC
T ss_pred             CCEEEEEECCCCeE-EEEEECCCCCcEEECC--CCCEEEEEcccccccccCCCCCEEEEEECCC----CeEEEEEECCCc
Confidence            56888888643321 1222211112499999  998887765          357899999998    5556555321  


Q ss_pred             -----CCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380          282 -----LGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV  354 (536)
Q Consensus       282 -----~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~  354 (536)
                           ...-..+.|+|+| ++++.+..  ++.|.++|+.+++........+.   .-..|.+...+++.+.||.+.++++
T Consensus       131 ~r~~~g~~P~~~a~spDG-k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          131 PRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             CCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             cccccCCCCceEEEcCCC-CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEEC
Confidence                 1235578999999 88888764  68999999999987766644332   2233555577888899999999999


Q ss_pred             CC-CccceeEecc----CCCeE-EEEEe-cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeE
Q 009380          355 RS-RKSATEWLLH----EARIN-TIDFN-PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHS  419 (536)
Q Consensus       355 ~~-~~~~~~~~~h----~~~i~-~i~~~-p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~  419 (536)
                      .+ ++.......+    ...+. ...|. ++| ++++ .+.+|.|++.|+............+.        -.......
T Consensus       207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~  284 (386)
T 3sjl_D          207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ  284 (386)
T ss_dssp             CSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred             CCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence            76 5543221111    12221 24554 445 4444 55689999999976431111111100        02334556


Q ss_pred             EEEccCCCeEEEEeC----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEEE
Q 009380          420 AYFSPSGSSLATTSF----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVEV  487 (536)
Q Consensus       420 l~~sp~g~~l~t~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~v  487 (536)
                      ++++|+++.+++...          .+.|.++|+.+++.+..+....    ..  ..+.+++|++ +|++.+ .++.|.+
T Consensus       285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~----~~--~~lavs~D~~~~ly~tn~~~~~VsV  358 (386)
T 3sjl_D          285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH----EI--DSINVSQDEKPLLYALSTGDKTLYI  358 (386)
T ss_dssp             EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE----EE--CEEEECSSSSCEEEEEETTTTEEEE
T ss_pred             eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC----Cc--ceEEECCCCCeEEEEEcCCCCeEEE
Confidence            888998888877642          2579999999999888875332    22  2377899997 677755 4789999


Q ss_pred             EcCCccccceeccC
Q 009380          488 ISPAQRRSVATLQS  501 (536)
Q Consensus       488 ~d~~~~~~~~~l~~  501 (536)
                      +|..+++.+.++..
T Consensus       359 iD~~t~k~~~~i~~  372 (386)
T 3sjl_D          359 HDAESGEELRSVNQ  372 (386)
T ss_dssp             EETTTCCEEEEECC
T ss_pred             EECCCCcEEEEecC
Confidence            99999999888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=1.7e-10  Score=111.05  Aligned_cols=229  Identities=8%  Similarity=0.025  Sum_probs=151.1

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      -.-+..|+|. ++.++++...++.|..|+..+.    . ...+ .+...+.++++++++ ++++ +. ++.|.+||..++
T Consensus        14 ~~Egp~w~~~-~~~l~~~d~~~~~i~~~d~~~~----~-~~~~-~~~~~~~~i~~~~dG-~l~v-~~-~~~l~~~d~~~g   83 (297)
T 3g4e_A           14 CGESPVWEEV-SNSLLFVDIPAKKVCRWDSFTK----Q-VQRV-TMDAPVSSVALRQSG-GYVA-TI-GTKFCALNWKEQ   83 (297)
T ss_dssp             BEEEEEEETT-TTEEEEEETTTTEEEEEETTTC----C-EEEE-ECSSCEEEEEEBTTS-SEEE-EE-TTEEEEEETTTT
T ss_pred             cccCCeEECC-CCEEEEEECCCCEEEEEECCCC----c-EEEE-eCCCceEEEEECCCC-CEEE-EE-CCeEEEEECCCC
Confidence            3567889983 3556777777899999999862    2 2222 245679999999998 6444 44 668999999988


Q ss_pred             eEEEeecC-----CCceeEEEecCCCCCEEEEEEC-----------CCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380          316 VFDLVYSS-----EYAVFSLSQQPNNVNTLYFGEG-----------QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       316 ~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~-----------dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~  379 (536)
                      ....+...     ...+..+++.|++ +++++...           .+.|..+|.. ++ +..+..+....+.++|+|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi~~spdg  160 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGLDWSLDH  160 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEEEECTTS
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccceEEcCCC
Confidence            76655432     2357889999998 55544322           2345555442 33 33333344567899999998


Q ss_pred             CCEEEEEeCCCcEEEEeCC--CCCCCCCCcc-eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC
Q 009380          380 PNIMATSSTDGTACIWDLR--SMATDKPEPM-KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~--~~~~~~~~~~-~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~  456 (536)
                      ..++++.+.++.|.+||+.  ++........ ....+......++++++|++.++...++.|.+||..+++.+..+....
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~  240 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV  240 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence            5556667778899999974  3320000111 111234577899999999877777778889999998888777764321


Q ss_pred             CCCceeeeeEEEEc-CCCCEEEEEcCC
Q 009380          457 QTGRWISSFRAIWG-WDDSCVFIGNMT  482 (536)
Q Consensus       457 ~~~~~~~~~~~~~s-~~g~~l~~gs~d  482 (536)
                         ..++  .++|+ |+++.|++++..
T Consensus       241 ---~~~t--~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          241 ---DKTT--SCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             ---SBEE--EEEEESGGGCEEEEEEBC
T ss_pred             ---CCce--EEEEeCCCCCEEEEEcCC
Confidence               2233  37787 888877766543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.38  E-value=5.8e-12  Score=124.44  Aligned_cols=175  Identities=10%  Similarity=-0.016  Sum_probs=131.4

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCe-----------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV-----------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW  352 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~  352 (536)
                      +++.+++++.. .++++|+.++ +.+|++....           ......+.. |+.++|  ++ ++|+++ .++.|++|
T Consensus        39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HG-DQVLVS-TRNALYSL  111 (388)
T ss_dssp             CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ET-TEEEEE-ESSEEEEE
T ss_pred             cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CC-CEEEEE-cCCcEEEE
Confidence            68899999998 8999999886 5569865332           112334566 999999  55 788888 88999999


Q ss_pred             ECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE
Q 009380          353 DVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       353 d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~  432 (536)
                      |+++.........|...+.++.+.+.  + +++++.||.|.+||+..+.     ..   .+...|++++|||+|  ++.|
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~-----~~---~~~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKS-----TK---QLAQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCC-----EE---EEEESEEEEEECSSE--EEEE
T ss_pred             EchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCc-----cc---cccCCceEEEEcCCc--eEEE
Confidence            99987766667778888998887752  3 8888999999999998753     11   256789999999999  7789


Q ss_pred             eCCCcEEEEeCCCCCc--ceEEec----cCCCCceeeeeEEEEcCCCCEEEE
Q 009380          433 SFDDTIGIWSGVNFEN--TSMIHH----NNQTGRWISSFRAIWGWDDSCVFI  478 (536)
Q Consensus       433 s~dg~I~iwd~~~~~~--~~~~~~----~~~~~~~~~~~~~~~s~~g~~l~~  478 (536)
                      ..||++++|+......  ...+..    ....+....++.+.|.+++.++++
T Consensus       179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999999998876664  444421    110111244555889998888776

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.37  E-value=4.7e-11  Score=119.60  Aligned_cols=265  Identities=10%  Similarity=0.020  Sum_probs=176.1

Q ss_pred             ceEEecccccCcccccccc--CCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC-
Q 009380          215 SCVDIGSLTLKPENIARIM--PGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH-  281 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~--~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h-  281 (536)
                      +.|.+.|...... +....  ..+  .++++|  |+++|+++.          .++.|.++|..+    ...+..+.-- 
T Consensus        99 ~~VsVID~~t~~v-v~~I~vG~~P--gia~Sp--Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t----~~vv~~I~v~g  169 (426)
T 3c75_H           99 TQQFVIDGSTGRI-LGMTDGGFLP--HPVAAE--DGSFFAQASTVFERIARGKRTDYVEVFDPVT----FLPIADIELPD  169 (426)
T ss_dssp             EEEEEEETTTTEE-EEEEEECSSC--EEEECT--TSSCEEEEEEEEEETTEEEEEEEEEEECTTT----CCEEEEEEETT
T ss_pred             CeEEEEECCCCEE-EEEEECCCCC--ceEECC--CCCEEEEEeccccccccCCCCCEEEEEECCC----CcEEEEEECCC
Confidence            6888888644322 11222  233  899999  998887775          367899999987    5555555321 


Q ss_pred             ------CCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380          282 ------LGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD  353 (536)
Q Consensus       282 ------~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d  353 (536)
                            ......+.|+|++ ++|+.+..  ++.|.+.|+.+.+....+.....   ....|++...+++.+.||.+.+.+
T Consensus       170 ~~r~~~g~~P~~~~~spDG-k~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~  245 (426)
T 3c75_H          170 APRFLVGTYQWMNALTPDN-KNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVD  245 (426)
T ss_dssp             CCCCCBSCCGGGSEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEE
T ss_pred             ccccccCCCcceEEEcCCC-CEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEE
Confidence                  1234578999999 88888874  58999999999887665544332   334455556778888899999999


Q ss_pred             CCCCcccee----EeccCCCe-EEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeEE
Q 009380          354 VRSRKSATE----WLLHEARI-NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHSA  420 (536)
Q Consensus       354 ~~~~~~~~~----~~~h~~~i-~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~l  420 (536)
                      +.+++....    +.....++ ..+.|.+++.. ++..+..+.|.+.|+..............        ........+
T Consensus       246 ~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~-~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v  324 (426)
T 3c75_H          246 FADGETKVTNTEVFHTEDELLINHPAFSLRSGR-LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT  324 (426)
T ss_dssp             CCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE-EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred             CCCCcEEEEeeeeeccCCCceeeEeeecCCCCE-EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence            866655422    21111221 23567887754 44445678999999865321000000000        011223347


Q ss_pred             EEccCCCeEEEEeC----------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC-EEEEEc-CCCcEEEE
Q 009380          421 YFSPSGSSLATTSF----------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS-CVFIGN-MTRTVEVI  488 (536)
Q Consensus       421 ~~sp~g~~l~t~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~gs-~dg~I~v~  488 (536)
                      +++|+++.+++...          ++.|.++|..+.+.+..+....      ....+.|++||+ ++++.+ .++.|.|+
T Consensus       325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~------~P~gia~spDg~~~lyv~n~~s~~VsVI  398 (426)
T 3c75_H          325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH------EIDSINVSQDAEPLLYALSAGTQTLHIY  398 (426)
T ss_dssp             EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------EECEEEECCSSSCEEEEEETTTTEEEEE
T ss_pred             EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC------CcCeEEEccCCCEEEEEEcCCCCeEEEE
Confidence            89999887777642          3579999999999888874322      233377999999 888888 58999999


Q ss_pred             cCCccccceec
Q 009380          489 SPAQRRSVATL  499 (536)
Q Consensus       489 d~~~~~~~~~l  499 (536)
                      |..+++.+.++
T Consensus       399 D~~t~kvv~tI  409 (426)
T 3c75_H          399 DAATGEELRSV  409 (426)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            99999998886

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.36  E-value=6.4e-11  Score=128.00  Aligned_cols=249  Identities=12%  Similarity=0.108  Sum_probs=160.7

Q ss_pred             CccccccccCCceEEEEEEecCCccEEEEEe-----CCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEE
Q 009380          225 KPENIARIMPGRITQMKFLPCSDVRMVVAGS-----KLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKI  298 (536)
Q Consensus       225 ~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~-----~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l  298 (536)
                      ++......+...+..++|||  ||++||.+.     ....|++||+.+    +..+.. +...  ....++|+ |+ +.|
T Consensus       119 D~n~la~~~~~~l~~~~~Sp--Dg~~lAy~~~~~G~~~~~i~v~dl~t----g~~~~~~~~~~--k~~~~~Ws-Dg-~~l  188 (693)
T 3iuj_A          119 DPNTLSPDGTTALDQLSFSR--DGRILAYSLSLAGSDWREIHLMDVES----KQPLETPLKDV--KFSGISWL-GN-EGF  188 (693)
T ss_dssp             CGGGGSTTSCCEEEEEEECT--TSSEEEEEEECSSCCEEEEEEEETTT----CSEEEEEEEEE--ESCCCEEE-TT-TEE
T ss_pred             ehhhccCCCcEEEEEEEECC--CCCEEEEEEecCCCceEEEEEEECCC----CCCCccccCCc--eeccEEEe-CC-CEE
Confidence            33444455667899999999  999888542     235799999997    333322 2111  12467899 98 888


Q ss_pred             EEEECCCe-------------EEEEECCCCeE--EEeecC----CCceeEEEecCCCCCEEEE-EEC---CCeEEEEECC
Q 009380          299 FTSCYDGL-------------IRLMDAEKEVF--DLVYSS----EYAVFSLSQQPNNVNTLYF-GEG---QGGLNIWDVR  355 (536)
Q Consensus       299 ~s~s~dg~-------------I~vwd~~~~~~--~~~~~~----~~~i~~l~~~~~~~~~l~~-g~~---dg~i~i~d~~  355 (536)
                      +.++.+..             |++|++.++..  ..++..    ...+.++.|+|++ .+|+. ...   ...|+++|+.
T Consensus       189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~  267 (693)
T 3iuj_A          189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLS  267 (693)
T ss_dssp             EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETT
T ss_pred             EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECC
Confidence            88887743             99999987542  333332    3357889999999 55544 332   2589999998


Q ss_pred             CCc-cceeEeccCCCeEEEEEecCCCCEEEEEeCC---CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE
Q 009380          356 SRK-SATEWLLHEARINTIDFNPRNPNIMATSSTD---GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT  431 (536)
Q Consensus       356 ~~~-~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d---g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t  431 (536)
                      ++. ....+..+....... |++++..+++....+   +.|..+|+.++..  .....+..|...+.  .|++++++|+.
T Consensus       268 ~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~--~~s~~g~~lv~  342 (693)
T 3iuj_A          268 QENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVL--TVHSGSGYLFA  342 (693)
T ss_dssp             STTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred             CCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEE--EEEEECCEEEE
Confidence            764 455666666666655 666676666666554   6799999987531  11234455665555  89999988877


Q ss_pred             EeCCC---cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC----CcEEEEcCCccc
Q 009380          432 TSFDD---TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT----RTVEVISPAQRR  494 (536)
Q Consensus       432 ~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d----g~I~v~d~~~~~  494 (536)
                      ...++   .|++||+... ....+...  ....+..  +.+++++..|+....+    +.|..||+.+++
T Consensus       343 ~~~~~g~~~l~~~d~~g~-~~~~l~~p--~~~~~~~--~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGK-RVREVALP--GLGSVSG--FNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEETTEEEEEEECTTSC-EEEEECCS--SSSEEEE--CCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEECCeeEEEEEECCCC-eeEEeecC--CCceEEe--eecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            76544   6899998743 33333221  1112222  4567787766655444    789999987764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.35  E-value=8.4e-10  Score=106.12  Aligned_cols=229  Identities=8%  Similarity=-0.008  Sum_probs=146.5

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA  360 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~  360 (536)
                      +..-..+..|++++..++++...++.|..||..++... .+.....+.++++++++ + |+++. ++.|.+||..+++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~i~~~~dG-~-l~v~~-~~~l~~~d~~~g~~~   86 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPVSSVALRQSG-G-YVATI-GTKFCALNWKEQSAV   86 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCEEEEEEBTTS-S-EEEEE-TTEEEEEETTTTEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCceEEEEECCCC-C-EEEEE-CCeEEEEECCCCcEE
Confidence            34456688999976366677777899999999987653 34456789999999998 5 44455 568999999877643


Q ss_pred             eeEec----cCCCeEEEEEecCCCCEEEEEeCC---------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC
Q 009380          361 TEWLL----HEARINTIDFNPRNPNIMATSSTD---------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS  427 (536)
Q Consensus       361 ~~~~~----h~~~i~~i~~~p~~~~~l~s~s~d---------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~  427 (536)
                      .....    ....++.+++.|+| +++++....         ..-.||.+....    .......+....+.++|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           87 VLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDH----HVKKYFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             EEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTS----CEEEEEEEESBEEEEEECTTSC
T ss_pred             EEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCC----CEEEEeeccccccceEEcCCCC
Confidence            22221    12347899999988 455544221         233455444311    2233334445678999999998


Q ss_pred             eEEE-EeCCCcEEEEeC--CCCCcc--eEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          428 SLAT-TSFDDTIGIWSG--VNFENT--SMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       428 ~l~t-~s~dg~I~iwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      .|+. .+.++.|.+||+  .++...  ..+.........  .-.++++++|.+.++....+.|.+||..+++.+..+..+
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~--p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI--PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE--EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC--CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            6654 456788999987  344321  112111111111  223667899987777777788999999988888887765


Q ss_pred             ceeeeeeeEeec-CCCCCEEEE
Q 009380          503 YISAIPCRFHAH-PHQVGTLAG  523 (536)
Q Consensus       503 ~~~~~~~~~~~~-p~~~~~las  523 (536)
                      ....  ..++|. | +++.|..
T Consensus       240 ~~~~--t~~~f~g~-d~~~L~v  258 (297)
T 3g4e_A          240 VDKT--TSCCFGGK-NYSEMYV  258 (297)
T ss_dssp             SSBE--EEEEEESG-GGCEEEE
T ss_pred             CCCc--eEEEEeCC-CCCEEEE
Confidence            3333  356676 5 4454443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.34  E-value=2.1e-09  Score=107.01  Aligned_cols=258  Identities=14%  Similarity=0.079  Sum_probs=165.7

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA  326 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~  326 (536)
                      ++..|++++.++.|..+|..+    +..+..+.............  + ..++.++.++.|..+|..+++....+.....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~t----G~~~W~~~~~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSD----GTVAWQTKVAGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTT----CCEEEEEECSSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCC----CCEEEEEeCCCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCC
Confidence            446778888899999999987    55555554433222222222  3 6888899999999999999887666554333


Q ss_pred             ee------EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC----------e-EEEEEecCCCCEEEEEeCC
Q 009380          327 VF------SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR----------I-NTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       327 i~------~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~----------i-~~i~~~p~~~~~l~s~s~d  389 (536)
                      +.      .....  + ..+++++.+|.|..+|..+++.+.........          + ......  + ..++.++.+
T Consensus       175 ~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~~~~  248 (376)
T 3q7m_A          175 SLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--N-GVVFALAYN  248 (376)
T ss_dssp             ----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--T-TEEEEECTT
T ss_pred             ceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--C-CEEEEEecC
Confidence            31      22222  2 47888899999999999999887666522110          1 111111  3 467777889


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEE
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      +.|..+|..+++    .... .. ......+..  ++..+++++.++.|..+|..+++.........  ......  +..
T Consensus       249 g~l~~~d~~tG~----~~w~-~~-~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~--~~~  316 (376)
T 3q7m_A          249 GNLTALDLRSGQ----IMWK-RE-LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLL--HRLLTS--PVL  316 (376)
T ss_dssp             SCEEEEETTTCC----EEEE-EC-CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTT--TSCCCC--CEE
T ss_pred             cEEEEEECCCCc----EEee-cc-CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccC--CCcccC--CEE
Confidence            999999998864    1111 11 222334443  46678888889999999999988765553111  111111  111


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                        .+..|++++.+|.|.++|..+++.+..+........ .....   .+..|+.++.+|.|+.|+.
T Consensus       317 --~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~-~~~~~---~~~~l~v~~~~G~l~~~~~  376 (376)
T 3q7m_A          317 --YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQ-TEPVA---ADGKLLIQAKDGTVYSITR  376 (376)
T ss_dssp             --ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBC-SCCEE---ETTEEEEEBTTSCEEEEEC
T ss_pred             --ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcce-eCCEE---ECCEEEEEeCCCEEEEEeC
Confidence              246888999999999999999988877664222222 11122   1378899999999999873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.33  E-value=1.9e-09  Score=105.15  Aligned_cols=225  Identities=12%  Similarity=0.006  Sum_probs=146.2

Q ss_pred             eEEEEEEecCC-ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          237 ITQMKFLPCSD-VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       237 I~~v~~~p~~~-~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      ..+..|+|  + +.+++++..++.|..|+..+    .. ...+. +...+.++.|++++ .++++ +.+ .|.+||..++
T Consensus        51 ~egp~~~~--~~~~l~~~d~~~~~i~~~d~~~----~~-~~~~~-~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g  119 (326)
T 2ghs_A           51 GEGPTFDP--ASGTAWWFNILERELHELHLAS----GR-KTVHA-LPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATG  119 (326)
T ss_dssp             EEEEEEET--TTTEEEEEEGGGTEEEEEETTT----TE-EEEEE-CSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTC
T ss_pred             CcCCeEeC--CCCEEEEEECCCCEEEEEECCC----Cc-EEEEE-CCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCC
Confidence            46788998  5 56677777789999999875    22 22232 34679999999997 66554 444 4999999888


Q ss_pred             eEEEeecC-----CCceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEE
Q 009380          316 VFDLVYSS-----EYAVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       316 ~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      ....+...     ...+.++++++++ +++++...      .+.|..+|  +++. ..+..+....+.++|+|++..+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          120 VLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEE
Confidence            76554432     2358899999998 55554332      25677777  4443 333334456789999998854555


Q ss_pred             EEeCCCcEEEEeCC--CC-CCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380          385 TSSTDGTACIWDLR--SM-ATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGR  460 (536)
Q Consensus       385 s~s~dg~i~iwdl~--~~-~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  460 (536)
                      +.+.++.|.+||+.  ++ ........... .....+..++++++|.++++...++.|.+||. +++....+...   ..
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~---~~  271 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP---GK  271 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS---CS
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC---CC
Confidence            55667899999986  43 21111111111 23456788999999987777666788999998 55555544322   12


Q ss_pred             eeeeeEEEEc-CCCCEEEEEcCC
Q 009380          461 WISSFRAIWG-WDDSCVFIGNMT  482 (536)
Q Consensus       461 ~~~~~~~~~s-~~g~~l~~gs~d  482 (536)
                      .+.  .++|+ +++..|++++..
T Consensus       272 ~~~--~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          272 QTT--CPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             BEE--EEEEESTTSCEEEEEEBC
T ss_pred             CcE--EEEEecCCCCEEEEEecC
Confidence            233  36787 888777666544

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=1.1e-09  Score=105.80  Aligned_cols=236  Identities=8%  Similarity=-0.040  Sum_probs=150.5

Q ss_pred             ceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380          274 GIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD  353 (536)
Q Consensus       274 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d  353 (536)
                      .+..+..+........|++++..++++...++.|..|+. ++...........+..+++.+++ +++++...++.|.+||
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEEC
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEEC
Confidence            344444455667889999998336777778899999998 45555555566778999999998 6555544567899999


Q ss_pred             CCCCccceeEecc-----CCCeEEEEEecCCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCCcceee
Q 009380          354 VRSRKSATEWLLH-----EARINTIDFNPRNPNIMAT----SST-------------DGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       354 ~~~~~~~~~~~~h-----~~~i~~i~~~p~~~~~l~s----~s~-------------dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      .. ++. ..+..+     ...++.+.+.|+| .++++    |..             .+.|..||..+++     .....
T Consensus       114 ~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~  185 (305)
T 3dr2_A          114 AD-GQA-HLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRMA  185 (305)
T ss_dssp             TT-SCE-EEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEEE
T ss_pred             CC-CCE-EEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc-----EEEEe
Confidence            75 543 222211     2346789999988 56665    332             2467778876543     22222


Q ss_pred             cccCceeEEEEccCCCeEEEEeCC------CcEEEEeCCCCCcceEEe--ccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFD------DTIGIWSGVNFENTSMIH--HNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~d------g~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                       .....+.++|+|+++.|+.+...      +.|.+|++.... +....  .....+. .  -.+.++++|+ |.+++.+ 
T Consensus       186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~-p--dgi~~d~~G~-lwv~~~~-  258 (305)
T 3dr2_A          186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGL-P--DGFCVDRGGW-LWSSSGT-  258 (305)
T ss_dssp             -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSC-C--CSEEECTTSC-EEECCSS-
T ss_pred             -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCC-C--CeEEECCCCC-EEEecCC-
Confidence             44566889999999988777665      689999986543 21111  0101111 1  1255788998 5555544 


Q ss_pred             cEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEE
Q 009380          484 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY  531 (536)
Q Consensus       484 ~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~  531 (536)
                      .|.+|+.. ++.+..+..+. .  +..++|.| +++.|..++.++..+
T Consensus       259 gv~~~~~~-g~~~~~~~~~~-~--~~~~~f~~-d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          259 GVCVFDSD-GQLLGHIPTPG-T--ASNCTFDQ-AQQRLFITGGPCLWM  301 (305)
T ss_dssp             EEEEECTT-SCEEEEEECSS-C--CCEEEECT-TSCEEEEEETTEEEE
T ss_pred             cEEEECCC-CCEEEEEECCC-c--eeEEEEeC-CCCEEEEEcCCeEEE
Confidence            49999984 55666665543 2  34566776 557777777665433

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.31  E-value=4.7e-10  Score=108.35  Aligned_cols=227  Identities=11%  Similarity=0.017  Sum_probs=149.6

Q ss_pred             CceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          235 GRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      .......|+|  +++ +++++..++.|..|+..     +. ...+..+...+..+++++++ +++++...++.|.+|+..
T Consensus        45 ~~~egp~~~~--~g~~l~~~d~~~~~i~~~~~~-----g~-~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~  115 (305)
T 3dr2_A           45 TWSEGPAWWE--AQRTLVWSDLVGRRVLGWRED-----GT-VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD  115 (305)
T ss_dssp             SSEEEEEEEG--GGTEEEEEETTTTEEEEEETT-----SC-EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT
T ss_pred             cCccCCeEeC--CCCEEEEEECCCCEEEEEeCC-----CC-EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC
Confidence            4567899999  887 67777788999999874     22 34555567789999999998 765555556889999987


Q ss_pred             CCeEEEeecC-----CCceeEEEecCCCCCEEEE----EEC-------------CCeEEEEECCCCccceeEeccCCCeE
Q 009380          314 KEVFDLVYSS-----EYAVFSLSQQPNNVNTLYF----GEG-------------QGGLNIWDVRSRKSATEWLLHEARIN  371 (536)
Q Consensus       314 ~~~~~~~~~~-----~~~i~~l~~~~~~~~~l~~----g~~-------------dg~i~i~d~~~~~~~~~~~~h~~~i~  371 (536)
                       +....+...     ...+.++++.+++ +++++    |..             .+.|..||..+++.....  .....+
T Consensus       116 -g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~  191 (305)
T 3dr2_A          116 -GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN  191 (305)
T ss_dssp             -SCEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred             -CCEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence             554433321     1346789999998 66664    332             357888888777654333  445678


Q ss_pred             EEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          372 TIDFNPRNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       372 ~i~~~p~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      .++|+|++ ..|+.+...      +.|.+||+........... ..........++++++|+ |.+++.++ |.+|+. +
T Consensus       192 gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~-~~~~~~~pdgi~~d~~G~-lwv~~~~g-v~~~~~-~  266 (305)
T 3dr2_A          192 GLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHF-ASVPDGLPDGFCVDRGGW-LWSSSGTG-VCVFDS-D  266 (305)
T ss_dssp             EEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEEEEEEE-ECCSSSCCCSEEECTTSC-EEECCSSE-EEEECT-T
T ss_pred             ceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEE-EECCCCCCCeEEECCCCC-EEEecCCc-EEEECC-C
Confidence            99999988 555555544      6899999875310000000 011234456789999998 44445554 999997 4


Q ss_pred             CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          446 FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      ++....+....    .  ...++|+++++.|++++.++..
T Consensus       267 g~~~~~~~~~~----~--~~~~~f~~d~~~L~it~~~~l~  300 (305)
T 3dr2_A          267 GQLLGHIPTPG----T--ASNCTFDQAQQRLFITGGPCLW  300 (305)
T ss_dssp             SCEEEEEECSS----C--CCEEEECTTSCEEEEEETTEEE
T ss_pred             CCEEEEEECCC----c--eeEEEEeCCCCEEEEEcCCeEE
Confidence            55555554322    1  2236788999888888776533

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.29  E-value=1.8e-10  Score=124.39  Aligned_cols=250  Identities=10%  Similarity=-0.012  Sum_probs=161.9

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCc--eEEEEEEecCCccEEEEEeCC
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGR--ITQMKFLPCSDVRMVVAGSKL  257 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~--I~~v~~~p~~~~~~l~tg~~d  257 (536)
                      .+|...+..+.+||||+.+++..+.     .++....|++||+......  ..+...  ...++|+   |++.|+.++.+
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~-----~G~~~~~i~v~dl~tg~~~--~~~~~~~k~~~~~Ws---Dg~~l~y~~~~  194 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSL-----AGSDWREIHLMDVESKQPL--ETPLKDVKFSGISWL---GNEGFFYSSYD  194 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEEC-----SSCCEEEEEEEETTTCSEE--EEEEEEEESCCCEEE---TTTEEEEEESS
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEec-----CCCceEEEEEEECCCCCCC--ccccCCceeccEEEe---CCCEEEEEEec
Confidence            3455678888999999999976321     1222357899998654422  222222  3677888   55667777666


Q ss_pred             C-------------cEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEE-EEEC---CCeEEEEECCCC--eE
Q 009380          258 G-------------NITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIF-TSCY---DGLIRLMDAEKE--VF  317 (536)
Q Consensus       258 g-------------~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~-s~s~---dg~I~vwd~~~~--~~  317 (536)
                      .             .|++|++.+.......+..... |...+..+.|+|++ ++|+ +.+.   ++.|.++|+.++  ..
T Consensus       195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~~~~~~  273 (693)
T 3iuj_A          195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLSQENAPL  273 (693)
T ss_dssp             CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred             CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECCCCCCce
Confidence            4             3999999874322234444444 56668899999999 6664 4432   358999999876  55


Q ss_pred             EEeecCCCceeEEEecCCCCCEEEEEECC---CeEEEEECCCCcc--ceeEeccCCCeEEEEEecCCCCEEEEEeCCC--
Q 009380          318 DLVYSSEYAVFSLSQQPNNVNTLYFGEGQ---GGLNIWDVRSRKS--ATEWLLHEARINTIDFNPRNPNIMATSSTDG--  390 (536)
Q Consensus       318 ~~~~~~~~~i~~l~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~--~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--  390 (536)
                      ..+..+....... +++++..+++....+   +.|..+|+.++..  ...+..|...+.  .|++++..++++...++  
T Consensus       274 ~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          274 LTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             EEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEE
T ss_pred             EEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCee
Confidence            5555555555554 566664455554443   6899999988764  355666766665  88888755555555555  


Q ss_pred             cEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEeCC----CcEEEEeCCCCCc
Q 009380          391 TACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTSFD----DTIGIWSGVNFEN  448 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~d----g~I~iwd~~~~~~  448 (536)
                      .|++||+...     ....+ ......+..+.+++++..|+....+    ++|..||+.+++.
T Consensus       351 ~l~~~d~~g~-----~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          351 RVEQFDYEGK-----RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEEEECTTSC-----EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEEEEECCCC-----eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            6889998752     12222 2344567788888888776665544    7899999877653

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.27  E-value=2.6e-09  Score=106.26  Aligned_cols=260  Identities=9%  Similarity=0.017  Sum_probs=163.2

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC---------CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH---------LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h---------~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      .+..|++++.++.|..||..+    ++.+..+...         ...+.+.-. .++ ..++.++.++.|..+|..+++.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~v~v~~~~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADD----GKEIWSVSLAEKDGWFSKEPALLSGGVT-VSG-GHVYIGSEKAQVYALNTSDGTV  125 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTT----CCEEEEEECCC---CCSCCCCCEEEEEE-EET-TEEEEEETTSEEEEEETTTCCE
T ss_pred             ECCEEEEEcCCCeEEEEEccC----CceeeeecCccccccccccCcccccCce-EeC-CEEEEEcCCCEEEEEECCCCCE
Confidence            345777788889999999987    4555444432         223332222 234 6888899999999999999887


Q ss_pred             EEeecCCCceeE-EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-----EEEEEecCCCCEEEEEeCCCc
Q 009380          318 DLVYSSEYAVFS-LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-----NTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       318 ~~~~~~~~~i~~-l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-----~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      .........+.+ .... +  ..+++++.++.|..+|..+++.+..+.......     ......  + ..++.++.++.
T Consensus       126 ~W~~~~~~~~~~~p~~~-~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~  199 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVS-D--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGR  199 (376)
T ss_dssp             EEEEECSSCCCSCCEEE-T--TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTE
T ss_pred             EEEEeCCCceEcCCEEE-C--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCE
Confidence            655544333322 1222 2  478889999999999999999877765332211     222222  2 36777888999


Q ss_pred             EEEEeCCCCCCCCCCcceeecc-c-C-----ceeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee
Q 009380          392 ACIWDLRSMATDKPEPMKVLSH-K-R-----AVHSAYFSP--SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI  462 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~-~-~-----~v~~l~~sp--~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  462 (536)
                      |..+|..+++    ........ . .     .+..+...|  .+..+++++.++.|..+|..+++........    .. 
T Consensus       200 l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~-  270 (376)
T 3q7m_A          200 VSAVLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----SV-  270 (376)
T ss_dssp             EEEEETTTCC----EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----CE-
T ss_pred             EEEEECCCCc----EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----CC-
Confidence            9999998864    21111110 0 0     000011112  3467888888999999999988876655321    11 


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ..  +.  .++..|++++.++.|..+|..+++.+........... .....   .+..|+.++.+|.|++||.
T Consensus       271 ~~--~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~---~~~~l~v~~~~g~l~~~d~  335 (376)
T 3q7m_A          271 ND--FI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLL-TSPVL---YNGNLVVGDSEGYLHWINV  335 (376)
T ss_dssp             EE--EE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCC-CCCEE---ETTEEEEECTTSEEEEEET
T ss_pred             CC--ce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcc-cCCEE---ECCEEEEEeCCCeEEEEEC
Confidence            11  11  2456788888899999999999988776652111111 11111   1378889999999999985

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.27  E-value=2.9e-09  Score=103.82  Aligned_cols=222  Identities=10%  Similarity=-0.008  Sum_probs=141.3

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEE
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWN  264 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd  264 (536)
                      ..+.+.+++++..+...         ...++.|..|+........ ..+...+.+++|+|  ++.++++. .+ .|.+||
T Consensus        50 ~~egp~~~~~~~~l~~~---------d~~~~~i~~~d~~~~~~~~-~~~~~~v~~i~~~~--dg~l~v~~-~~-gl~~~d  115 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWF---------NILERELHELHLASGRKTV-HALPFMGSALAKIS--DSKQLIAS-DD-GLFLRD  115 (326)
T ss_dssp             BEEEEEEETTTTEEEEE---------EGGGTEEEEEETTTTEEEE-EECSSCEEEEEEEE--TTEEEEEE-TT-EEEEEE
T ss_pred             CCcCCeEeCCCCEEEEE---------ECCCCEEEEEECCCCcEEE-EECCCcceEEEEeC--CCeEEEEE-CC-CEEEEE
Confidence            34567778875544322         2335678888865433222 22357899999999  88877764 33 499999


Q ss_pred             CCCCCCCCCceEEeccC-----CCCEEEEEEecCCCCEEEEEEC------CCeEEEEECCCCeEEEeecCCCceeEEEec
Q 009380          265 LDSQQDEDNGIYLFRTH-----LGPISGIVTQQYCLSKIFTSCY------DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ  333 (536)
Q Consensus       265 ~~~~~~~~~~~~~~~~h-----~~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~  333 (536)
                      ..++    .. ..+...     ...+.++.++|+| .++++...      .+.|..++  ++....+.........++|+
T Consensus       116 ~~~g----~~-~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s  187 (326)
T 2ghs_A          116 TATG----VL-TLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFS  187 (326)
T ss_dssp             TTTC----CE-EEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEEC
T ss_pred             CCCC----cE-EEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEc
Confidence            8762    22 222111     2358899999998 66665432      24566666  56555444444457789999


Q ss_pred             CCCCCEEEEE-ECCCeEEEEECC--CC-ccc--eeE---eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 009380          334 PNNVNTLYFG-EGQGGLNIWDVR--SR-KSA--TEW---LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK  404 (536)
Q Consensus       334 ~~~~~~l~~g-~~dg~i~i~d~~--~~-~~~--~~~---~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~  404 (536)
                      |++ +.++++ +.++.|.+||+.  ++ ...  ..+   ......+..+++.++| +++++...++.|.+||.. ++   
T Consensus       188 ~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~-g~---  261 (326)
T 2ghs_A          188 PDG-TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD-GN---  261 (326)
T ss_dssp             TTS-CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT-CC---
T ss_pred             CCC-CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC-CC---
Confidence            998 555554 457899999986  55 321  122   2234557889999987 566666667889999983 32   


Q ss_pred             CCcceeecccCceeEEEEc-cCCCeEEEEeCC
Q 009380          405 PEPMKVLSHKRAVHSAYFS-PSGSSLATTSFD  435 (536)
Q Consensus       405 ~~~~~~~~~~~~v~~l~~s-p~g~~l~t~s~d  435 (536)
                       ....+..+...+.+++|+ |++..|++++..
T Consensus       262 -~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          262 -HIARYEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             -EEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             -EEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence             223333455679999998 888777655543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.26  E-value=4.8e-10  Score=110.41  Aligned_cols=264  Identities=8%  Similarity=-0.097  Sum_probs=168.5

Q ss_pred             cEEEEEeCCC----cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCCeEEEEECCC
Q 009380          249 RMVVAGSKLG----NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDGLIRLMDAEK  314 (536)
Q Consensus       249 ~~l~tg~~dg----~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg~I~vwd~~~  314 (536)
                      ..+++-..++    +|.++|..+    .+.+..+..-..+  .+.++|++ .+++.+.          .++.|.+||+.+
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t----~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T  105 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGC----GVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVT  105 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTT----TEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred             eEEEECCccCCccceEEEEECCC----CeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCC
Confidence            3444444444    788999988    6777777765566  79999999 7777775          378999999999


Q ss_pred             CeEEEeecCC--------CceeEEEecCCCCCEEEEEEC--CCeEEE--EECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          315 EVFDLVYSSE--------YAVFSLSQQPNNVNTLYFGEG--QGGLNI--WDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       315 ~~~~~~~~~~--------~~i~~l~~~~~~~~~l~~g~~--dg~i~i--~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      ++........        .....++++|++ ++++++..  +..|.+  +|+.+   +..+... +.   +.+.|++...
T Consensus       106 ~~vv~~I~v~~~~~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~  177 (368)
T 1mda_H          106 FLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAAT  177 (368)
T ss_dssp             CCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTE
T ss_pred             CCEEEEEECCCccccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeE
Confidence            8776554322        346789999999 67777764  457888  99877   4444321 11   2345666677


Q ss_pred             EEEEeCCCcEEEEeCCC-----CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc--eEEecc
Q 009380          383 MATSSTDGTACIWDLRS-----MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT--SMIHHN  455 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~-----~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~--~~~~~~  455 (536)
                      +++.+.||.+.+.|+.+     ++........+.-...+.   . .+++..++..+. +.|.+.|.......  ..+...
T Consensus       178 ~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~  252 (368)
T 1mda_H          178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred             EEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence            77888899999999876     221100000011112233   3 566666666666 89999998653211  111100


Q ss_pred             C----CCCceeee-eEEEEcCCCCEEEEEcC---------CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-E
Q 009380          456 N----QTGRWISS-FRAIWGWDDSCVFIGNM---------TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-T  520 (536)
Q Consensus       456 ~----~~~~~~~~-~~~~~s~~g~~l~~gs~---------dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~  520 (536)
                      .    ..+..... -.+.++++++.++++..         ++.+.++|..+.+.+.++..+.   .+..+.++| ++. .
T Consensus       253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~-Dg~~l  328 (368)
T 1mda_H          253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQ-DGASD  328 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECC-SSSCE
T ss_pred             cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECC-CCCEE
Confidence            0    00000000 01458999998887643         2356699999999998887543   345788888 445 5


Q ss_pred             EEEEc-cCCeEEEEecC
Q 009380          521 LAGAT-GGGQVYVWTSD  536 (536)
Q Consensus       521 lasgs-~Dg~v~iW~~d  536 (536)
                      +++.. .++.|.|+|++
T Consensus       329 ~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          329 NYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEEETTTTEEEEEESS
T ss_pred             EEEccCCCCeEEEEECC
Confidence            66666 59999999974

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.25  E-value=6.9e-13  Score=132.00  Aligned_cols=255  Identities=9%  Similarity=0.036  Sum_probs=139.7

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC--
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE--  324 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--  324 (536)
                      ++..|++++.||.|..||..+    ++.+..+..  +.+.+..+..++ ..+++++.||.|+.||..+++........  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~t----G~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRT----GSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTT----CCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCC----CCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            677899999999999999988    666766665  455555555666 67888889999999999887654433221  


Q ss_pred             CceeE-EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380          325 YAVFS-LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD  403 (536)
Q Consensus       325 ~~i~~-l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~  403 (536)
                      ..+.+ ..+. .+ ..+++++.++.|+.||..+|+.+..+..+.    .+.++|++ ..+++++.|+.|+.||.++++. 
T Consensus        81 ~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~-  152 (369)
T 2hz6_A           81 ELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPST-SLLYLGRTEYTITMYDTKTREL-  152 (369)
T ss_dssp             HHHTTCSCC-------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSC-
T ss_pred             cccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccC-CEEEEEecCCEEEEEECCCCCE-
Confidence            11111 1111 23 478888999999999999999887776543    23456655 5788888899999999998752 


Q ss_pred             CCCcceeecccCceeEEEEccCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE----
Q 009380          404 KPEPMKVLSHKRAVHSAYFSPSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV----  476 (536)
Q Consensus       404 ~~~~~~~~~~~~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l----  476 (536)
                         ......+  ......++++.   ..+++++.||.|..||..+++.+.......+   .+..  ..++.+|...    
T Consensus       153 ---~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~p---v~~~--~~~~~dg~~~v~~~  222 (369)
T 2hz6_A          153 ---RWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASP---VVAF--YVWQREGLRKVMHI  222 (369)
T ss_dssp             ---CCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSC---EEEE--EECTTSSCEEECCE
T ss_pred             ---EEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCc---eEEE--EEecCCceEeccce
Confidence               2222111  11223333332   5678889999999999999987766653221   1111  3345555431    


Q ss_pred             EEEcCCCcEEEEcCCccc----cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          477 FIGNMTRTVEVISPAQRR----SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~~~~----~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      +.+  ++.++.+|..+|+    .+..+........   ...   .+..|+.++.||.|+.++
T Consensus       223 ~~~--~~~l~~ld~~tG~~~~~~~W~~~~~~~~~s---p~~---~~g~lyv~~~~G~l~al~  276 (369)
T 2hz6_A          223 NVA--VETLRYLTFMSGEVGRITKWKYPFPKETEA---KSK---LTPTLYVGKYSTSLYASP  276 (369)
T ss_dssp             EEE--HHHHHHHHHHHHHHHHHHTSCCCCCCHHHH---HHH---SEEEECBEECSSCEECCE
T ss_pred             eec--ccceeeeehhcCCcccceeeeeccCccccc---ccc---ccceEEEecccCCEEecC
Confidence            222  3457778877777    5555543221100   001   135777888888887765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.21  E-value=6.4e-10  Score=109.35  Aligned_cols=241  Identities=12%  Similarity=0.063  Sum_probs=151.1

Q ss_pred             CceEEEEEEecCCccEEEEEe--CCCcEEEEECCCCCCCCCceEEe-------ccCCCCEEEEEEecCCCCEEEEEEC--
Q 009380          235 GRITQMKFLPCSDVRMVVAGS--KLGNITFWNLDSQQDEDNGIYLF-------RTHLGPISGIVTQQYCLSKIFTSCY--  303 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~-------~~h~~~V~~l~~~~~~~~~l~s~s~--  303 (536)
                      .....|+++|  +|+++++..  .++.++||.+.+    +. +..+       ..|...+.++++.+++ .++++-..  
T Consensus        17 ~~p~~va~~~--~g~~~v~~~~~~~~~~~l~~~~~----g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~   88 (343)
T 2qe8_A           17 LAPGNITLTP--DGRLFLSLHQFYQPEMQVAELTQ----DG-LIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQ   88 (343)
T ss_dssp             SCEEEEEECT--TSCEEEEECGGGCCSCSEEEEET----TE-EEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHH
T ss_pred             CCcceEEECC--CCCEEEEeCCCCCCceEEEEECC----CC-eecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCC
Confidence            6789999999  999888864  234356666643    22 2222       2355789999999997 55554433  


Q ss_pred             ---CCeEEEEECCCCeEEEeecC-------CCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCccceeEecc----
Q 009380          304 ---DGLIRLMDAEKEVFDLVYSS-------EYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRKSATEWLLH----  366 (536)
Q Consensus       304 ---dg~I~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~~~~~~~~h----  366 (536)
                         ++.|.+||+.+++....+..       ...+..+++.+++...+++..   .++.|.+||+.+++....+..|    
T Consensus        89 ~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~  168 (343)
T 2qe8_A           89 SKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA  168 (343)
T ss_dssp             HTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred             cCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence               57899999998875544332       234688999986533334444   5789999999877654443221    


Q ss_pred             -------------------------CCCeEEEEEecCCCCEEEEEeCCC-cEEEEeCCCCCC---CCC---Ccceeeccc
Q 009380          367 -------------------------EARINTIDFNPRNPNIMATSSTDG-TACIWDLRSMAT---DKP---EPMKVLSHK  414 (536)
Q Consensus       367 -------------------------~~~i~~i~~~p~~~~~l~s~s~dg-~i~iwdl~~~~~---~~~---~~~~~~~~~  414 (536)
                                               ...++.|+|+|++ ..|+.+..++ .|..++......   ...   ..+...++.
T Consensus       169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~  247 (343)
T 2qe8_A          169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK  247 (343)
T ss_dssp             CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEEC
T ss_pred             ccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccC
Confidence                                     1236889999988 5666666555 455554321100   000   011223445


Q ss_pred             CceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEE
Q 009380          415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI  488 (536)
Q Consensus       415 ~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~  488 (536)
                      .....++++++|.++++...++.|.+||..+++.......  ....+..  .+++++++.++++.+..+.+.+|
T Consensus       248 g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~--~~~~~p~--~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          248 PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTD--EKLSWTD--SFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEEC--GGGSCEE--EEEECTTSCEEEEECCGGGSGGG
T ss_pred             CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEEC--CceecCC--eeEECCCCcEEEEeCcccccccc
Confidence            5677899999999888888899999999855543222221  1122223  36788888877777655544333

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.20  E-value=2.7e-09  Score=114.52  Aligned_cols=239  Identities=15%  Similarity=0.127  Sum_probs=159.6

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-C----CCEEEEEEecCCCCEEEEEEC------CCeEEEEECCCCe
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-L----GPISGIVTQQYCLSKIFTSCY------DGLIRLMDAEKEV  316 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~----~~V~~l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~  316 (536)
                      +..|++++.|+.|..+|..+    ++.+..+..+ .    ..+.+--.. .+ ..++.++.      +|.|+.||..+++
T Consensus       128 ~~~v~v~~~dg~l~alD~~t----G~~~W~~~~~~~~~~~~~~~~~p~v-~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~  201 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAAT----GKEVWHQNTFEGQKGSLTITGAPRV-FK-GKVIIGNGGAEYGVRGYITAYDAETGE  201 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTT----CCEEEEEETTTTCCSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEcCCCEEEEEECCC----CCEEeeecCCcCcCcCcccccCcEE-EC-CEEEEEecccccCCCCEEEEEECCCCc
Confidence            45788888999999999988    6666666544 1    112111111 13 46666553      7999999999998


Q ss_pred             EEEeecCCC---------------------------------ceeEEEecCCCCCEEEEEECCC----------------
Q 009380          317 FDLVYSSEY---------------------------------AVFSLSQQPNNVNTLYFGEGQG----------------  347 (536)
Q Consensus       317 ~~~~~~~~~---------------------------------~i~~l~~~~~~~~~l~~g~~dg----------------  347 (536)
                      ....+....                                 ....+++.+++ .++++++.++                
T Consensus       202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~  280 (677)
T 1kb0_A          202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNL  280 (677)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred             EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCe
Confidence            765443211                                 11357788887 7888887764                


Q ss_pred             ---eEEEEECCCCccceeEec--cC-------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCcceee-c
Q 009380          348 ---GLNIWDVRSRKSATEWLL--HE-------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPEPMKVL-S  412 (536)
Q Consensus       348 ---~i~i~d~~~~~~~~~~~~--h~-------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~  412 (536)
                         .|..+|..+++.+..++.  |.       ....-+....+|.  ..++.++.+|.|+++|..+++.    +.... .
T Consensus       281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~----l~~~~~~  356 (677)
T 1kb0_A          281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKF----ISAKNFV  356 (677)
T ss_dssp             TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE----EEEEESS
T ss_pred             eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCE----ecccccc
Confidence               599999999998877763  21       1122233333442  5788999999999999998752    11110 0


Q ss_pred             ----------ccCc------------------------eeEEEEccCCCeEEEEeC------------------------
Q 009380          413 ----------HKRA------------------------VHSAYFSPSGSSLATTSF------------------------  434 (536)
Q Consensus       413 ----------~~~~------------------------v~~l~~sp~g~~l~t~s~------------------------  434 (536)
                                ....                        -..++|+|++.++++...                        
T Consensus       357 ~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~  436 (677)
T 1kb0_A          357 PVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQS  436 (677)
T ss_dssp             CCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTG
T ss_pred             ccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccc
Confidence                      0000                        125789998888877543                        


Q ss_pred             -------------------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          435 -------------------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       435 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                                         .+.|..||+.+++.+..+.+.....      ...+...+..+++++.|+.+++||..+++.
T Consensus       437 ~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~------~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~  510 (677)
T 1kb0_A          437 GTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWN------GGTLTTAGNVVFQGTADGRLVAYHAATGEK  510 (677)
T ss_dssp             GGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCC------CCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCc------CcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence                               2779999999998887776533211      122345777899999999999999999999


Q ss_pred             ceeccCCc
Q 009380          496 VATLQSPY  503 (536)
Q Consensus       496 ~~~l~~~~  503 (536)
                      +.++...+
T Consensus       511 lw~~~~~~  518 (677)
T 1kb0_A          511 LWEAPTGT  518 (677)
T ss_dssp             EEEEECSS
T ss_pred             eeeeeCCC
Confidence            99887543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.19  E-value=1.5e-10  Score=114.02  Aligned_cols=260  Identities=8%  Similarity=-0.050  Sum_probs=162.8

Q ss_pred             eEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccC---
Q 009380          216 CVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTH---  281 (536)
Q Consensus       216 ~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h---  281 (536)
                      .|.+.|....... ....-..+  .+.++|  |+++++++.          .++.|.+||+.+    .+.+..+..+   
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~sp--Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T----~~vv~~I~v~~~~  118 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVT----FLPIADIELPDAP  118 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTT----CCEEEEEEETTSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECC--CCCEEEEEcccccccccCCCCCEEEEEECCC----CCEEEEEECCCcc
Confidence            6667775432211 11112334  799999  998888876          368899999998    6677776533   


Q ss_pred             ----CCCEEEEEEecCCCCEEEEEEC--CCeEEE--EECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEE
Q 009380          282 ----LGPISGIVTQQYCLSKIFTSCY--DGLIRL--MDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWD  353 (536)
Q Consensus       282 ----~~~V~~l~~~~~~~~~l~s~s~--dg~I~v--wd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d  353 (536)
                          ......+.++|++ ++++++..  +..|.+  +|+.+  ... ......   +.+.|++...+++.+.||.+.+.|
T Consensus       119 ~~~~g~~P~~ia~SpDG-k~lyVan~~~~~~v~V~~iD~~t--v~~-i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          119 RFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASD--DQL-TKSASC---FHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             SCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEE--EEE-EECSSC---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred             ccccCCCcceEEEcCCC-CEEEEEccCCCCeEEEEEEchhh--ceE-EECCCc---eEEccCCCeEEEEEcCCCCEEEEE
Confidence                1234578999999 88888875  467888  99877  222 222121   224456656777778889999999


Q ss_pred             CCC-----Cccce----eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-----c---ccCc
Q 009380          354 VRS-----RKSAT----EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-----S---HKRA  416 (536)
Q Consensus       354 ~~~-----~~~~~----~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-----~---~~~~  416 (536)
                      +.+     ++.+.    .+.....+.   . .+++.. ++..+. +.|.+.|+............+.     .   ....
T Consensus       192 ~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~-~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g  265 (368)
T 1mda_H          192 LAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM-LVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG  265 (368)
T ss_dssp             CCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE-EEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred             CccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE-EEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence            886     43321    111122333   3 555644 444445 8999999865321000000000     0   1122


Q ss_pred             eeEEEEccCCCeEEEEeC---------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE-EEEEc-CCCcE
Q 009380          417 VHSAYFSPSGSSLATTSF---------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC-VFIGN-MTRTV  485 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~~gs-~dg~I  485 (536)
                      ...+.|+|+++.++++..         ++.+.++|+.+.+.+..+....      ....+.|++||++ +++.. .++.|
T Consensus       266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~------~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH------DSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE------EECEEEECCSSSCEEEEEETTTTEE
T ss_pred             ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC------CcceEEECCCCCEEEEEccCCCCeE
Confidence            233789999988887543         2356799999988777664322      1333778999985 45555 48999


Q ss_pred             EEEcCCccccceeccCC
Q 009380          486 EVISPAQRRSVATLQSP  502 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~~~  502 (536)
                      .|+|+.+++.+.++..+
T Consensus       340 sVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          340 DIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEESSSCEEEEECCCC
T ss_pred             EEEECCCCcEEEEEECC
Confidence            99999999999888753

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=5.9e-09  Score=112.05  Aligned_cols=272  Identities=13%  Similarity=0.165  Sum_probs=169.0

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC----------CE-EEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG----------PI-SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      +..|++++.++.|..+|..+    ++.+..+..+..          .+ ..+.+  .+ ..|+.++.|+.|..+|..+++
T Consensus        70 ~g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-g~v~v~~~dg~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARD----GRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WK-GKVYVGVLDGRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ET-TEEEEECTTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCC----CceeEEEcCCCCccccccccccCCCCccEE--EC-CEEEEEccCCEEEEEECCCCC
Confidence            44667777788999999987    556655543321          01 11222  23 689999999999999999998


Q ss_pred             EEEeecCC---CceeEEEecC--CCCCEEEEEE------CCCeEEEEECCCCccceeEecc--C----------------
Q 009380          317 FDLVYSSE---YAVFSLSQQP--NNVNTLYFGE------GQGGLNIWDVRSRKSATEWLLH--E----------------  367 (536)
Q Consensus       317 ~~~~~~~~---~~i~~l~~~~--~~~~~l~~g~------~dg~i~i~d~~~~~~~~~~~~h--~----------------  367 (536)
                      ....+...   .....+...|  .+ ..+++++      .+|.|..||..+|+.+..+...  .                
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  221 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT  221 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred             EeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence            76554432   1111111111  12 3566654      3689999999999987766521  0                


Q ss_pred             -------------CCeEEEEEecCCCCEEEEEeCCCc-------------------EEEEeCCCCCCCCCCcceee--cc
Q 009380          368 -------------ARINTIDFNPRNPNIMATSSTDGT-------------------ACIWDLRSMATDKPEPMKVL--SH  413 (536)
Q Consensus       368 -------------~~i~~i~~~p~~~~~l~s~s~dg~-------------------i~iwdl~~~~~~~~~~~~~~--~~  413 (536)
                                   .....+++.|++ .+++.++.++.                   |..||..+++    ..-...  .|
T Consensus       222 ~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~----~~W~~~~~~~  296 (689)
T 1yiq_A          222 WFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE----YVWHYQTTPG  296 (689)
T ss_dssp             CCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC----EEEEEESSTT
T ss_pred             cCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc----eeEeeecCCc
Confidence                         011257888866 57888877763                   9999999975    222222  12


Q ss_pred             c-------CceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccCC---------CCcee------------
Q 009380          414 K-------RAVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNNQ---------TGRWI------------  462 (536)
Q Consensus       414 ~-------~~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~---------~~~~~------------  462 (536)
                      .       ..+.......+|+   .++.++.+|.++++|..+++.+........         .+..+            
T Consensus       297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~  376 (689)
T 1yiq_A          297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG  376 (689)
T ss_dssp             CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred             ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence            1       1222222233565   788999999999999999987744322110         00000            


Q ss_pred             ---ee----------eEEEEcCCCCEEEEEcC---------------------------------------------CCc
Q 009380          463 ---SS----------FRAIWGWDDSCVFIGNM---------------------------------------------TRT  484 (536)
Q Consensus       463 ---~~----------~~~~~s~~g~~l~~gs~---------------------------------------------dg~  484 (536)
                         ..          -.++|+|+..+|++...                                             +|.
T Consensus       377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~  456 (689)
T 1yiq_A          377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK  456 (689)
T ss_dssp             SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred             CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence               00          01467888777776522                                             377


Q ss_pred             EEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          485 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       485 I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      |..||+.+++.+.++..+... ....+..   .+.+++.|+.||.|+.||.+
T Consensus       457 l~A~D~~tG~~~W~~~~~~~~-~~g~~~t---agglvf~gt~dg~l~a~D~~  504 (689)
T 1yiq_A          457 LIAWDPVKQQAAWEVPYVTIF-NGGTLST---AGNLVFEGSADGRVIAYAAD  504 (689)
T ss_dssp             EEEEETTTTEEEEEEEESSSC-CCCEEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             EEEEECCCCCeEeEccCCCCc-cCccceE---CCCEEEEECCCCcEEEEECC
Confidence            999999999988887643211 1112222   35799999999999999964

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.17  E-value=4.4e-09  Score=113.07  Aligned_cols=244  Identities=11%  Similarity=0.102  Sum_probs=156.5

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC--CCCEEEEEEec--CCCCEEEEEE------CCCeEEEEECCCCeE
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH--LGPISGIVTQQ--YCLSKIFTSC------YDGLIRLMDAEKEVF  317 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~~~--~~~~~l~s~s------~dg~I~vwd~~~~~~  317 (536)
                      +..|++++.|+.|..+|..+    ++.+..+...  ......+...|  .+ ..++.++      .+|.|..||..+++.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~T----G~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKT----GQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKE  195 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTT----CCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCE
T ss_pred             CCEEEEEccCCEEEEEECCC----CCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcE
Confidence            45788888999999999988    5555554431  11001111111  12 4555554      378999999999987


Q ss_pred             EEeecCC--------------------------------CceeEEEecCCCCCEEEEEECCCe-----------------
Q 009380          318 DLVYSSE--------------------------------YAVFSLSQQPNNVNTLYFGEGQGG-----------------  348 (536)
Q Consensus       318 ~~~~~~~--------------------------------~~i~~l~~~~~~~~~l~~g~~dg~-----------------  348 (536)
                      ...+...                                .....+++.|+. .++++++.++.                 
T Consensus       196 ~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~  274 (689)
T 1yiq_A          196 AWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFL  274 (689)
T ss_dssp             EEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTT
T ss_pred             EEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceee
Confidence            6544310                                011257788877 78999988764                 


Q ss_pred             --EEEEECCCCccceeEec--cC-------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCC-----ccee
Q 009380          349 --LNIWDVRSRKSATEWLL--HE-------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPE-----PMKV  410 (536)
Q Consensus       349 --i~i~d~~~~~~~~~~~~--h~-------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~-----~~~~  410 (536)
                        |..+|..+|+.+..++.  |.       ..+.......++.  ..++.++.+|.++++|..+++.....     ....
T Consensus       275 ~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~  354 (689)
T 1yiq_A          275 SSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK  354 (689)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             eeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc
Confidence              99999999999877763  22       1122222222331  27888999999999999987521000     0000


Q ss_pred             ------------------e-cc-----------cCceeEEEEccCCCeEEEEeC--------------------------
Q 009380          411 ------------------L-SH-----------KRAVHSAYFSPSGSSLATTSF--------------------------  434 (536)
Q Consensus       411 ------------------~-~~-----------~~~v~~l~~sp~g~~l~t~s~--------------------------  434 (536)
                                        . ..           ...-..++|+|+..++++...                          
T Consensus       355 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  434 (689)
T 1yiq_A          355 GMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGL  434 (689)
T ss_dssp             EEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSS
T ss_pred             ccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCc
Confidence                              0 00           001123788998777776532                          


Q ss_pred             -------------------CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          435 -------------------DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       435 -------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                                         +|.|..||+.+++.+..+........      ..+...+.++++|+.|+.|+.||..+|+.
T Consensus       435 ~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~------g~~~tagglvf~gt~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          435 RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNG------GTLSTAGNLVFEGSADGRVIAYAADTGEK  508 (689)
T ss_dssp             EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCC------CEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccC------ccceECCCEEEEECCCCcEEEEECCCCcc
Confidence                               37799999999988877765432111      22345678999999999999999999999


Q ss_pred             ceeccCCc
Q 009380          496 VATLQSPY  503 (536)
Q Consensus       496 ~~~l~~~~  503 (536)
                      +.++..+.
T Consensus       509 lw~~~~~~  516 (689)
T 1yiq_A          509 LWEQPAAS  516 (689)
T ss_dssp             EEEEECSS
T ss_pred             ceeeeCCC
Confidence            98887543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.16  E-value=2.8e-09  Score=103.70  Aligned_cols=261  Identities=13%  Similarity=0.131  Sum_probs=160.2

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .+.++...+  ++. |..++.+  |..||. +    +..+..+..+........+.  + ..|+.++.++.|..+|.. +
T Consensus        61 ~~~~~~~~~--~g~-l~v~t~~--l~~~d~-~----g~~~~~~~~~~~~~~~~~~~--~-~~l~v~t~~~~l~~~d~~-g  126 (330)
T 3hxj_A           61 IECRPSIGK--DGT-IYFGSDK--VYAINP-D----GTEKWRFDTKKAIVSDFTIF--E-DILYVTSMDGHLYAINTD-G  126 (330)
T ss_dssp             EEECCEETT--TTE-ECCSSCE--EEEECC-C----GGGGGGSCC-----CCEEEE--T-TEEEEECTTSEEEEECTT-S
T ss_pred             cccceEEec--CCc-EEEecCc--EEEECC-C----CcEEEEEECCCCcccCceEE--C-CEEEEEecCCEEEEEcCC-C
Confidence            456666655  554 4455544  888875 3    33333332222223333333  3 678889899999999998 5


Q ss_pred             eEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 009380          316 VFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACI  394 (536)
Q Consensus       316 ~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~i  394 (536)
                      ....... ....+.++...+++  .+++++.++.|..||.. ++.+..+......+.++.+.+++ . +..++  +.|..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g-~-l~v~t--~~l~~  199 (330)
T 3hxj_A          127 TEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDG-T-IYFGS--DKVYA  199 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTC-C-EEEES--SSEEE
T ss_pred             CEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCC-E-EEEEe--CEEEE
Confidence            5444333 33445666776665  47778888999999998 77776766666677778887666 3 44444  78999


Q ss_pred             EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380          395 WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS  474 (536)
Q Consensus       395 wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  474 (536)
                      || .+++    ...........+.++..+++|. |..++.++.|..+|. +++....+......   ...  +...+++ 
T Consensus       200 ~d-~~g~----~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~---~~~--~~~~~~g-  266 (330)
T 3hxj_A          200 IN-PDGT----EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRI---ESS--PVIGNTD-  266 (330)
T ss_dssp             EC-TTSC----EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCC---CSC--CEECTTS-
T ss_pred             EC-CCCc----EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCc---ccc--ceEcCCC-
Confidence            99 5542    2223333446688888988875 666777888999974 45544444322211   111  2234444 


Q ss_pred             EEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          475 CVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       475 ~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .|++++.++.|..+|. +++.+..+..... .+ ..+...+ + ..|..++.+|.+++...
T Consensus       267 ~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~-~~-~~~~~d~-~-g~l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          267 TIYFGSYDGHLYAINP-DGTEKWNFETGSW-II-ATPVIDE-N-GTIYFGTRNGKFYALFN  322 (330)
T ss_dssp             CEEEECTTCEEEEECT-TSCEEEEEECSSC-CC-SCCEECT-T-CCEEEECTTSCEEEEEC
T ss_pred             eEEEecCCCCEEEECC-CCcEEEEEEcCCc-cc-cceEEcC-C-CEEEEEcCCCeEEEEec
Confidence            6777888888999996 6666655543221 11 2233333 3 56778999999988754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=3.9e-09  Score=113.20  Aligned_cols=270  Identities=10%  Similarity=0.150  Sum_probs=171.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC-----------CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG-----------PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ..|++++.++.|.-+|..+    ++.+..+.....           ....+.+  .+ ..|+.++.|+.|..+|..+++.
T Consensus        78 g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~-~~v~v~~~dg~l~alD~~tG~~  150 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRT----GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WK-GKVYVGAWDGRLIALDAATGKE  150 (677)
T ss_dssp             TEEEEECGGGCEEEEETTT----TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ET-TEEEEECTTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEECCC----CcEEEEEcCCCCccccccccccCCCCCceE--EC-CEEEEEcCCCEEEEEECCCCCE
Confidence            4566667778888888887    555555443221           0112333  34 6899999999999999999987


Q ss_pred             EEeecCC------CceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCC----------------
Q 009380          318 DLVYSSE------YAVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEAR----------------  369 (536)
Q Consensus       318 ~~~~~~~------~~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~----------------  369 (536)
                      ...+...      ..+.+.-...+  ..+++++.      +|.|+.||..+++.+..+......                
T Consensus       151 ~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~  228 (677)
T 1kb0_A          151 VWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART  228 (677)
T ss_dssp             EEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             EeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence            6655432      12221111112  46666654      689999999999988776532211                


Q ss_pred             ----------------eEEEEEecCCCCEEEEEeCCC-------------------cEEEEeCCCCCCCCCCcceee--c
Q 009380          370 ----------------INTIDFNPRNPNIMATSSTDG-------------------TACIWDLRSMATDKPEPMKVL--S  412 (536)
Q Consensus       370 ----------------i~~i~~~p~~~~~l~s~s~dg-------------------~i~iwdl~~~~~~~~~~~~~~--~  412 (536)
                                      ...+++.|++ .+++.++.++                   .|..+|..+++    ..-...  .
T Consensus       229 w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~----~~W~~~~~~  303 (677)
T 1kb0_A          229 WDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK----YKWHYQETP  303 (677)
T ss_dssp             SCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC----EEEEEESST
T ss_pred             ccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCC----EEEEEecCC
Confidence                            1357888876 5777776554                   49999999875    222221  1


Q ss_pred             cc-------CceeEEEEccCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccC--------CCCceee-----------
Q 009380          413 HK-------RAVHSAYFSPSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNN--------QTGRWIS-----------  463 (536)
Q Consensus       413 ~~-------~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~-----------  463 (536)
                      |.       ....-+....+|   ..+++++.+|.|+++|..+++.+..+....        ..++.+.           
T Consensus       304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~  383 (677)
T 1kb0_A          304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ  383 (677)
T ss_dssp             TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred             CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence            21       122233344477   689999999999999999998876664321        1111110           


Q ss_pred             -e----------eEEEEcCCCCEEEEEcC-------------------------------------------CCcEEEEc
Q 009380          464 -S----------FRAIWGWDDSCVFIGNM-------------------------------------------TRTVEVIS  489 (536)
Q Consensus       464 -~----------~~~~~s~~g~~l~~gs~-------------------------------------------dg~I~v~d  489 (536)
                       .          -.++++|++.++++...                                           .+.|..||
T Consensus       384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D  463 (677)
T 1kb0_A          384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD  463 (677)
T ss_dssp             ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred             EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence             0          02567888888877543                                           27799999


Q ss_pred             CCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          490 PAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       490 ~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +.+++.+.++..... .....+..   .+.+++.++.||.|++||.+
T Consensus       464 ~~tG~~~W~~~~~~~-~~~g~~~~---~g~~v~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          464 PVAQKAAWSVEHVSP-WNGGTLTT---AGNVVFQGTADGRLVAYHAA  506 (677)
T ss_dssp             TTTTEEEEEEEESSS-CCCCEEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             CCCCcEEeecCCCCC-CcCcceEe---CCCEEEEECCCCcEEEEECC
Confidence            999998887764221 11112222   35788889999999999964

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.11  E-value=2.5e-11  Score=120.72  Aligned_cols=186  Identities=13%  Similarity=0.090  Sum_probs=111.1

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCC-CeE-EE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA-RIN-TI  373 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~-~i~-~i  373 (536)
                      ..+++++.||.|+.||..+++....+.. ..+.+..+..++ .++++++.||.|+.||..+++.+..+..+.. .+. +.
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp   87 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASP   87 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCS
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCc
Confidence            7899999999999999999988766655 556665566665 5777778999999999999988766653311 110 01


Q ss_pred             EEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          374 DFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      .+. .+ ..+++++.|+.|+.||..+++.    ......+.    ...++|++..+++++.|+.|+.||..+++....+.
T Consensus        88 ~~~-~~-~~v~~g~~dg~v~a~D~~tG~~----~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  157 (369)
T 2hz6_A           88 CRS-SD-GILYMGKKQDIWYVIDLLTGEK----QQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT  157 (369)
T ss_dssp             CC-------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred             eEe-cC-CEEEEEeCCCEEEEEECCCCcE----EEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence            111 23 3677788899999999998752    22222221    24566788889999999999999999998877664


Q ss_pred             ccCCCCceeeeeEEEEcCCC---CEEEEEcCCCcEEEEcCCccccceecc
Q 009380          454 HNNQTGRWISSFRAIWGWDD---SCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       454 ~~~~~~~~~~~~~~~~s~~g---~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      ....     ..  ..++.+.   ..+++++.++.|..||..+++.+.++.
T Consensus       158 ~~~~-----~~--~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          158 YFDY-----AA--SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEE-----CC--BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             cccc-----cC--ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            3211     11  2233322   467788899999999999998887765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.10  E-value=3.1e-09  Score=104.41  Aligned_cols=242  Identities=8%  Similarity=-0.031  Sum_probs=152.1

Q ss_pred             cceeeeecCCCCcccccccc---cccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC----
Q 009380          184 NGFKTCKDEGLGVGSCDLIK---GVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK----  256 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~---~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~----  256 (536)
                      .....+.++++|++++....   +..+++.-. +|.+.-|-- ..  .....+-..+..++++|  ++.++++...    
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~-~~--~~~~~~~~~p~gv~~d~--~g~L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPP-QS--GNAIITFDTVLGIKSDG--NGIVWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCC-CC--SSCCCCCSCEEEEEECS--SSEEEEEECHHHHT
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCC-cc--cCcccceeEeeEEEEcC--CCcEEEEcCCCCcC
Confidence            57888999999998876421   101222222 333332210 00  01123456899999999  8887776544    


Q ss_pred             -CCcEEEEECCCCCCCCCceEEecc------CCCCEEEEEEecCCCCEEEEEE---CCCeEEEEECCCCeEEEeecC---
Q 009380          257 -LGNITFWNLDSQQDEDNGIYLFRT------HLGPISGIVTQQYCLSKIFTSC---YDGLIRLMDAEKEVFDLVYSS---  323 (536)
Q Consensus       257 -dg~v~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~~l~s~s---~dg~I~vwd~~~~~~~~~~~~---  323 (536)
                       ++.|.+||+.+    +..+..+..      +...+..+++++++...+++-.   .++.|.+||+.++........   
T Consensus        91 ~~~~i~~~d~~t----g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~  166 (343)
T 2qe8_A           91 SVPKLVAWDTLN----NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG  166 (343)
T ss_dssp             SCCEEEEEETTT----TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred             CCCeEEEEECCC----CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence             57899999986    444444432      2345689999987524445544   678999999987765443311   


Q ss_pred             ---------------------------CCceeEEEecCCCCCEEEEEECCC-eEEEEECC---CCc-----cce--eEec
Q 009380          324 ---------------------------EYAVFSLSQQPNNVNTLYFGEGQG-GLNIWDVR---SRK-----SAT--EWLL  365 (536)
Q Consensus       324 ---------------------------~~~i~~l~~~~~~~~~l~~g~~dg-~i~i~d~~---~~~-----~~~--~~~~  365 (536)
                                                 ...+..|+|+|++ +.|+++...+ .|..++..   .+.     ...  ...+
T Consensus       167 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g  245 (343)
T 2qe8_A          167 IAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS  245 (343)
T ss_dssp             TSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred             ccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence                                       1235789999998 7788877665 56666532   111     011  1223


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCeEEEEeCCCcEEEEe
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWS  442 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd  442 (536)
                      +......+++.++| +++++...++.|.+||..+++     ...+.  .+...+.+++|.++|.++++.+..+.+.+|.
T Consensus       246 ~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G~-----~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          246 EKPICDGISIDKDH-NIYVGDLAHSAIGVITSADRA-----YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             ECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTTE-----EEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             cCCCCceEEECCCC-CEEEEccCCCeEEEEECCCCC-----EEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            44566789999987 788888888999999984432     22222  2345688999999998888877655554443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=5.1e-09  Score=107.30  Aligned_cols=241  Identities=11%  Similarity=0.096  Sum_probs=160.6

Q ss_pred             CccEEEEEeCC-CcEEEEECCCCCCCCCceEEec-cCCCCEEEEEE-e-cCCCCEEEEEE------------------CC
Q 009380          247 DVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFR-THLGPISGIVT-Q-QYCLSKIFTSC------------------YD  304 (536)
Q Consensus       247 ~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~-~-~~~~~~l~s~s------------------~d  304 (536)
                      ||++|+...++ +.|.+.|+.+    .++...+. .....+..+++ . |++ .++++++                  ++
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t----~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~  174 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYV  174 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCC----ceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccC
Confidence            67777776664 5699999997    55555332 22345788888 4 888 8888884                  35


Q ss_pred             CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-------------------------------------
Q 009380          305 GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-------------------------------------  347 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-------------------------------------  347 (536)
                      +.+.+.|..+.+......-......++++|++ .++++.+.+.                                     
T Consensus       175 ~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          175 NVFTAVDADKWEVAWQVLVSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             ceEEEEECCCCeEEEEEEeCCCccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            68999999998776655544456778899988 6777777543                                     


Q ss_pred             -eEEEEECCC--Ccc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCC------CCC-CCcceeecccCc
Q 009380          348 -GLNIWDVRS--RKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMA------TDK-PEPMKVLSHKRA  416 (536)
Q Consensus       348 -~i~i~d~~~--~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~------~~~-~~~~~~~~~~~~  416 (536)
                       .|.+.|.++  ++. +..+. -.....++.++|||..+++++-.+.+|.++|+.+.+      ... ..+.....-...
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g  332 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG  332 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC
T ss_pred             CcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC
Confidence             377777776  444 34443 234567899999997677777788999999998631      000 011222234567


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCC----------CCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC---CC
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVN----------FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM---TR  483 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~---dg  483 (536)
                      ...++|+|+|...++.-.|++|.+||+..          .+.+..+....+.++.........++||++|++.+.   |+
T Consensus       333 P~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr  412 (595)
T 1fwx_A          333 PLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR  412 (595)
T ss_dssp             EEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred             cceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence            88999999995445566899999999876          334444443333233223233346899999999754   44


Q ss_pred             cE----------EEEcCCccc
Q 009380          484 TV----------EVISPAQRR  494 (536)
Q Consensus       484 ~I----------~v~d~~~~~  494 (536)
                      .+          .++|+.+++
T Consensus       413 ~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          413 FLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             SCCCCSSCCEEEEEEECSSSS
T ss_pred             cccCCCCCCCcceEEEcCCCc
Confidence            31          788886553

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.07  E-value=1.7e-08  Score=100.01  Aligned_cols=231  Identities=13%  Similarity=0.109  Sum_probs=144.7

Q ss_pred             CccEEE-EEeCCCcEEEEECCCCCCCCCceEEec------cCC-CCEEEEEEecCCCCEEEEEECC------CeEEEEEC
Q 009380          247 DVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFR------THL-GPISGIVTQQYCLSKIFTSCYD------GLIRLMDA  312 (536)
Q Consensus       247 ~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~------~h~-~~V~~l~~~~~~~~~l~s~s~d------g~I~vwd~  312 (536)
                      ++++|+ .|..++.|.|+|+.+.....+....+.      ... ..-..+.+.|++  +++++..+      |.|.++|.
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence            666655 466678999999976433234444442      111 134567788987  66666655      78999999


Q ss_pred             CCCeEEEeecCC----CceeEEEecCCCCCEEEEEE-------------------CCCeEEEEECCCCccceeEecc-C-
Q 009380          313 EKEVFDLVYSSE----YAVFSLSQQPNNVNTLYFGE-------------------GQGGLNIWDVRSRKSATEWLLH-E-  367 (536)
Q Consensus       313 ~~~~~~~~~~~~----~~i~~l~~~~~~~~~l~~g~-------------------~dg~i~i~d~~~~~~~~~~~~h-~-  367 (536)
                      .+.+........    .--..+-|+|++ +.+++..                   ...+|.+||+.+++.+.++... . 
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            988776655422    223457889998 7777774                   3679999999998877777642 1 


Q ss_pred             CCeEEEEE--ecCCCCEEEEEe-----CCCcEEEEeCCCCCCCCCCcceeec----------------ccCceeEEEEcc
Q 009380          368 ARINTIDF--NPRNPNIMATSS-----TDGTACIWDLRSMATDKPEPMKVLS----------------HKRAVHSAYFSP  424 (536)
Q Consensus       368 ~~i~~i~~--~p~~~~~l~s~s-----~dg~i~iwdl~~~~~~~~~~~~~~~----------------~~~~v~~l~~sp  424 (536)
                      .....|.|  +|++...++++.     .+++|.+|....+.-.....+.+..                .......|.++|
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23445555  998865556665     6778877665432100000000000                024578899999


Q ss_pred             CCCeEEEEeC-CCcEEEEeCCCCCc---ceEEeccCC-------CCcee--eeeEEEEcCCCCEEEEEc
Q 009380          425 SGSSLATTSF-DDTIGIWSGVNFEN---TSMIHHNNQ-------TGRWI--SSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       425 ~g~~l~t~s~-dg~I~iwd~~~~~~---~~~~~~~~~-------~~~~~--~~~~~~~s~~g~~l~~gs  480 (536)
                      ||++|+++.. .+.|.+||+.+...   +..+.....       .+..+  ..-.+.++|||++|++++
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9999988875 67899999864432   223322110       00100  112266899999999998

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.99  E-value=6.2e-07  Score=84.36  Aligned_cols=238  Identities=8%  Similarity=-0.019  Sum_probs=143.0

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCC-CceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCc
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDED-NGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYA  326 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~  326 (536)
                      .+|+.+.. +.|+.+++....... .....+......+.+++|++++..++++-..++.|.++++.++....+... -..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            45555553 478888887532100 001112222245789999997624444445578999999987654444432 257


Q ss_pred             eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC--CCcEEEEeCCCCCCC
Q 009380          327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST--DGTACIWDLRSMATD  403 (536)
Q Consensus       327 i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~--dg~i~iwdl~~~~~~  403 (536)
                      ...+++.+++.+++++-...+.|.++++.... ...+. ........++++|++..++++...  .+.|..+++....  
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--  157 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--  157 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--
Confidence            78999999763444444556899999986433 22332 222567899999976555555443  4688888876421  


Q ss_pred             CCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-
Q 009380          404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-  480 (536)
Q Consensus       404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-  480 (536)
                         ...+. ..-.....++++|++..|+.+. ..+.|.++|.........+.   ..... ..  ++.  ++..|+++. 
T Consensus       158 ---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P-~g--i~~--d~~~lyva~~  226 (267)
T 1npe_A          158 ---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYP-FA--VTS--YGKNLYYTDW  226 (267)
T ss_dssp             ---CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSE-EE--EEE--ETTEEEEEET
T ss_pred             ---cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCc-eE--EEE--eCCEEEEEEC
Confidence               11111 2234678999999876665554 56789999987543222222   11111 12  223  344555444 


Q ss_pred             CCCcEEEEcCCccccceeccC
Q 009380          481 MTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       481 ~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      .++.|.++|..+++.+..+..
T Consensus       227 ~~~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          227 KTNSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEECC
T ss_pred             CCCeEEEEeCCCCCceEEEcc
Confidence            568899999999888877754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.97  E-value=9.1e-07  Score=83.22  Aligned_cols=205  Identities=11%  Similarity=0.039  Sum_probs=131.6

Q ss_pred             CceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          235 GRITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ..+..++|+|  ++. ++++-..++.|..+++..    ......+.........+++.+++..++++-...+.|.++++.
T Consensus        36 ~~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g----~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~  109 (267)
T 1npe_A           36 KVIIGLAFDC--VDKVVYWTDISEPSIGRASLHG----GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEEET--TTTEEEEEETTTTEEEEEESSS----CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CcEEEEEEec--CCCEEEEEECCCCEEEEEecCC----CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence            4578999998  554 445555678999999875    222222322335678999999762444454557899999997


Q ss_pred             CCeEEEeecCC-CceeEEEecCCCCCEEEEEEC---CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC
Q 009380          314 KEVFDLVYSSE-YAVFSLSQQPNNVNTLYFGEG---QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       314 ~~~~~~~~~~~-~~i~~l~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      ......+.... .....++++|++ ..|+++..   .+.|..+++.. .....+. ........++++|++..++++-..
T Consensus       110 g~~~~~~~~~~~~~P~~i~vd~~~-g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          110 GTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCEEEEEECCCCCccEEEEeeCC-CEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence            65433333322 567899999976 45555554   36888888753 3333332 233467899999987666677667


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      .+.|.++|+....     ...+.........++.. .+.++++....+.|.++|..+++....+.
T Consensus       188 ~~~I~~~~~~g~~-----~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          188 THRAECLNPAQPG-----RRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TTEEEEEETTEEE-----EEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEecCCCc-----eEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            7899999987531     11222222334566654 34444444456889999998887777664

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=2.3e-07  Score=86.33  Aligned_cols=206  Identities=10%  Similarity=0.021  Sum_probs=136.3

Q ss_pred             EEeecCCC--ceeEEEecCCCCCEEEEEEC---CCeEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEEEEeCCCc
Q 009380          318 DLVYSSEY--AVFSLSQQPNNVNTLYFGEG---QGGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       318 ~~~~~~~~--~i~~l~~~~~~~~~l~~g~~---dg~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ...+.|..  ....+.|++++  .|+.++.   ++.|.++|+.+++.+..+.... .....+++.  +..+.++.-.++.
T Consensus        12 v~~~p~~~~~f~~Gl~~~~dg--~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~   87 (266)
T 2iwa_A           12 LNEFPHDPYAFTQGLVYAEND--TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEECCTTCCEEEEEECSTT--EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred             EEEEECCCCCCcccEEEeCCC--eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence            34445553  35789999875  5665543   5799999999999988876322 223356665  4456666667899


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee-eeeEEEEc
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI-SSFRAIWG  470 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~s  470 (536)
                      +.++|..+.+     ........ .-....++++|+.++++..++.|.++|..+.+....+..... +..+ ....+.|.
T Consensus        88 v~viD~~t~~-----v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~  160 (266)
T 2iwa_A           88 GFIYDRRTLS-----NIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI  160 (266)
T ss_dssp             EEEEETTTTE-----EEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE
T ss_pred             EEEEECCCCc-----EEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE
Confidence            9999998853     22323222 112234566788788877889999999999888777753321 1111 11224456


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceeccCCc-----------eeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY-----------ISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~-----------~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                       +|..++....++.|.+.|..+++.+..+....           ...+...++++|.....++++...+.|.+-++
T Consensus       161 -dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          161 -NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             -TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             -CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence             66544444457899999999999988886421           11345678999865567888888888887664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.89  E-value=2.4e-07  Score=94.98  Aligned_cols=224  Identities=11%  Similarity=0.084  Sum_probs=145.5

Q ss_pred             CCCCEEEEEEC-CCeEEEEECCCCeEEEee--cCCCceeEEEe-c-CCCCCEEEEEE------------------CCCeE
Q 009380          293 YCLSKIFTSCY-DGLIRLMDAEKEVFDLVY--SSEYAVFSLSQ-Q-PNNVNTLYFGE------------------GQGGL  349 (536)
Q Consensus       293 ~~~~~l~s~s~-dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~-~-~~~~~~l~~g~------------------~dg~i  349 (536)
                      || .+++.+.. ++.|.+.|+.+.++..+.  .....+..+++ . |++ .++++++                  .++.+
T Consensus       100 DG-~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A          100 DG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CC-CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCcccccccccCceE
Confidence            77 66665554 567999999998876643  33456888887 4 787 6777774                  24589


Q ss_pred             EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC--------------------------------------c
Q 009380          350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG--------------------------------------T  391 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--------------------------------------~  391 (536)
                      .++|..+.+.+.++.--. ....++++|+|. ++++.+.+.                                      .
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            999999988877776323 456688999884 555555332                                      4


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCc--------ceEEeccCCCCcee
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFEN--------TSMIHHNNQTGRWI  462 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~--------~~~~~~~~~~~~~~  462 (536)
                      |.|.|.++.+  .........-.....++.++|||+++++++ .+++|.++|+.+.+.        ...+......+.  
T Consensus       256 V~VID~~~~~--~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~--  331 (595)
T 1fwx_A          256 VKVVDGRKEA--SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL--  331 (595)
T ss_dssp             EEEEECSGGG--CCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS--
T ss_pred             EEEEeCcccC--CceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC--
Confidence            7777777621  012133334445778899999999887776 678999999985421        111111112221  


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEcCCc----------cccceeccCCceee-e--eeeEeecCCCCCEEEEEc
Q 009380          463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQ----------RRSVATLQSPYISA-I--PCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~----------~~~~~~l~~~~~~~-~--~~~~~~~p~~~~~lasgs  525 (536)
                      ..+..+|+++|...++.-.|+.|.+||+..          .+.+.++..+.... .  ......+| ||.+|++++
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N  406 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS  406 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence            233477999994455667789999999987          45566666543321 1  11234466 678888875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=3.2e-07  Score=98.26  Aligned_cols=269  Identities=12%  Similarity=0.183  Sum_probs=163.1

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC----------CE-EEEEEecCCCCEEEEEECCCeEEEEECCCCeE
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG----------PI-SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~----------~V-~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~  317 (536)
                      ..|++++.++.|.-+|..+    ++.+..+.....          .+ ..+.+  .+ ..|+.++.|+.|..+|..+++.
T Consensus        67 g~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~v~v~~~dg~l~alD~~tG~~  139 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAAS----GKELWRYDPEVAKVKARTSCCDAVNRGVAL--WG-DKVYVGTLDGRLIALDAKTGKA  139 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTT----CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EB-TEEEEECTTSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEECCC----ChhceEECCCCCccccccccccCCccceEE--EC-CEEEEEcCCCEEEEEECCCCCE
Confidence            4566666778888888877    455555433211          00 11223  23 6888899999999999999987


Q ss_pred             EEeecCC-----CceeE-EEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccC------------------
Q 009380          318 DLVYSSE-----YAVFS-LSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHE------------------  367 (536)
Q Consensus       318 ~~~~~~~-----~~i~~-l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~------------------  367 (536)
                      ...+...     ..+.+ ..+. +  ..++++..      +|.|..+|..+|+.+..+....                  
T Consensus       140 ~W~~~~~~~~~~~~~~~~P~v~-~--~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~  216 (668)
T 1kv9_A          140 IWSQQTTDPAKPYSITGAPRVV-K--GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT  216 (668)
T ss_dssp             EEEEECSCTTSSCBCCSCCEEE-T--TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred             eeeeccCCCCCcceecCCCEEE-C--CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence            6554331     11111 0111 2  36666654      5899999999999887765210                  


Q ss_pred             -------------CCeEEEEEecCCCCEEEEEeCCC-------------------cEEEEeCCCCCCCCCCcceee--cc
Q 009380          368 -------------ARINTIDFNPRNPNIMATSSTDG-------------------TACIWDLRSMATDKPEPMKVL--SH  413 (536)
Q Consensus       368 -------------~~i~~i~~~p~~~~~l~s~s~dg-------------------~i~iwdl~~~~~~~~~~~~~~--~~  413 (536)
                                   .....+++.|+. .+++.++.++                   .|..+|..+++    ..-...  .|
T Consensus       217 ~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~----~~W~~~~~~~  291 (668)
T 1kv9_A          217 WQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK----LAWHYQVTPG  291 (668)
T ss_dssp             CCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC----EEEEEESSTT
T ss_pred             CCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc----eeeEeecCCC
Confidence                         011246788866 5777777665                   39999999875    222222  12


Q ss_pred             c-------CceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccC---------CCCceee-----------
Q 009380          414 K-------RAVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNN---------QTGRWIS-----------  463 (536)
Q Consensus       414 ~-------~~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~---------~~~~~~~-----------  463 (536)
                      .       .+.....+..+|+   .++.++.+|.++++|..+++.+.......         ..+..+.           
T Consensus       292 ~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~  371 (668)
T 1kv9_A          292 DSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPI  371 (668)
T ss_dssp             CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCE
T ss_pred             ccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCee
Confidence            2       2233233334665   68899999999999999998774432211         0111100           


Q ss_pred             -e----------eEEEEcCCCCEEEEE------------------------------------cCCCcEEEEcCCccccc
Q 009380          464 -S----------FRAIWGWDDSCVFIG------------------------------------NMTRTVEVISPAQRRSV  496 (536)
Q Consensus       464 -~----------~~~~~s~~g~~l~~g------------------------------------s~dg~I~v~d~~~~~~~  496 (536)
                       .          -.++++|+...+++.                                    ..+|.|..||..+++.+
T Consensus       372 ~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~  451 (668)
T 1kv9_A          372 VMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAA  451 (668)
T ss_dssp             EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEE
T ss_pred             EECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEE
Confidence             0          014566766665542                                    13478999999999988


Q ss_pred             eeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          497 ATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       497 ~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .++..+... ....+..   .+.+|+.++.||.|++||.+
T Consensus       452 W~~~~~~~~-~~~~~~t---~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          452 WKVPYPTHW-NGGTLST---AGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             EEEEESSSC-CCCEEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             EEccCCCCC-cCceeEe---CCCEEEEECCcccchhhhhh
Confidence            776543211 1112222   35789999999999999863

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.85  E-value=5e-08  Score=94.72  Aligned_cols=251  Identities=10%  Similarity=0.047  Sum_probs=152.2

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-Cce
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAV  327 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i  327 (536)
                      ..|..++.++.|..|| .+    +.....+..+...+.++...+++  .|+.++.+  |..+|. ++.....+... ...
T Consensus        31 g~l~v~t~~~~l~~~d-~~----g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~  100 (330)
T 3hxj_A           31 GTIYLGSSNKNLYAIN-TD----GSVKWFFKSGEIIECRPSIGKDG--TIYFGSDK--VYAINP-DGTEKWRFDTKKAIV  100 (330)
T ss_dssp             SCEECSSTTTTTEEEC-TT----SCEEESSCGGGEEEECCEETTTT--EECCSSCE--EEEECC-CGGGGGGSCC-----
T ss_pred             CeEEEEcCCCEEEEEC-CC----CcEEEEEecCCCcccceEEecCC--cEEEecCc--EEEECC-CCcEEEEEECCCCcc
Confidence            3566777788899999 65    44444444444445666666654  56666555  888886 44332222221 122


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP  407 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~  407 (536)
                      ....+. +  ..+++++.++.|..+|.. ++.......+...+.++...+++  .+..++.++.|..||.. ++    ..
T Consensus       101 ~~~~~~-~--~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~~-g~----~~  169 (330)
T 3hxj_A          101 SDFTIF-E--DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINPD-GT----EK  169 (330)
T ss_dssp             CCEEEE-T--TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECTT-SC----EE
T ss_pred             cCceEE-C--CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECCC-CC----Ee
Confidence            233333 3  578889999999999988 77766666555666777777655  36667778999999987 43    22


Q ss_pred             ceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380          408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV  487 (536)
Q Consensus       408 ~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v  487 (536)
                      .........+.++.+.+++.+++ ++  +.|..|| .+++.........   ..+..  +...++| .|.+++.++.|..
T Consensus       170 ~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~---~~~~~--~~~~~~g-~l~v~t~~~gl~~  239 (330)
T 3hxj_A          170 WRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGY---WTVTR--PAISEDG-TIYVTSLDGHLYA  239 (330)
T ss_dssp             EEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSS---CCCSC--CEECTTS-CEEEEETTTEEEE
T ss_pred             EEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCC---cceec--eEECCCC-eEEEEcCCCeEEE
Confidence            23333445677788877887544 44  7799999 6665554443221   11222  3446666 5666777788888


Q ss_pred             EcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++. +++.+..+...... . ..+...+  ...|..++.+|.|..+|.
T Consensus       240 ~~~-~g~~~~~~~~~~~~-~-~~~~~~~--~g~l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          240 INP-DGTEKWRFKTGKRI-E-SSPVIGN--TDTIYFGSYDGHLYAINP  282 (330)
T ss_dssp             ECT-TSCEEEEEECSSCC-C-SCCEECT--TSCEEEECTTCEEEEECT
T ss_pred             ECC-CCCEeEEeeCCCCc-c-ccceEcC--CCeEEEecCCCCEEEECC
Confidence            875 45555555432211 1 1223332  357778888888888874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.84  E-value=7.9e-07  Score=88.11  Aligned_cols=213  Identities=14%  Similarity=0.089  Sum_probs=136.7

Q ss_pred             cccccceEEecccccCccc--ccccc---------C-CceEEEEEEecCCccEEEEEeCC------CcEEEEECCCCCCC
Q 009380          210 KIEVGSCVDIGSLTLKPEN--IARIM---------P-GRITQMKFLPCSDVRMVVAGSKL------GNITFWNLDSQQDE  271 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~--~~~~~---------~-~~I~~v~~~p~~~~~~l~tg~~d------g~v~iwd~~~~~~~  271 (536)
                      .+..++.|.+.|+...+..  +.+..         . ..-..+.+.|  +| +++++..+      |.|.++|..+    
T Consensus       101 ~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p--dG-i~Vs~~g~~~g~~~g~v~vlD~~T----  173 (462)
T 2ece_A          101 PGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP--DA-IYISALGNEEGEGPGGILMLDHYS----  173 (462)
T ss_dssp             EBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS--SC-EEEEEEEETTSCSCCEEEEECTTT----
T ss_pred             ccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC--Ce-EEEEcCCCcCCCCCCeEEEEECCC----
Confidence            4667789999998554332  11211         1 1345567788  88 66666555      7899999987    


Q ss_pred             CCceEEeccCCCC---EEEEEEecCCCCEEEEEE-------------------CCCeEEEEECCCCeEEEeecCC---Cc
Q 009380          272 DNGIYLFRTHLGP---ISGIVTQQYCLSKIFTSC-------------------YDGLIRLMDAEKEVFDLVYSSE---YA  326 (536)
Q Consensus       272 ~~~~~~~~~h~~~---V~~l~~~~~~~~~l~s~s-------------------~dg~I~vwd~~~~~~~~~~~~~---~~  326 (536)
                      ...+..+..-..+   -..+.|+|++ +.+++..                   .+.+|.+||+.+++....+...   ..
T Consensus       174 ~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          174 FEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             CCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             CeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            6667666532222   3357889998 8888885                   4789999999988766555442   34


Q ss_pred             eeEEEe--cCCCCCEEEEEE------CCCeEEEEECCCCcc--ceeE--ec----------------cCCCeEEEEEecC
Q 009380          327 VFSLSQ--QPNNVNTLYFGE------GQGGLNIWDVRSRKS--ATEW--LL----------------HEARINTIDFNPR  378 (536)
Q Consensus       327 i~~l~~--~~~~~~~l~~g~------~dg~i~i~d~~~~~~--~~~~--~~----------------h~~~i~~i~~~p~  378 (536)
                      ...+.|  +|++ .++++++      .+++|.+|....+..  ...+  ..                -......|.++||
T Consensus       253 P~~i~f~~~Pdg-~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          253 ALELRPLHDPTK-LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEECSSTTC-CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             cceeEeeECCCC-CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            455655  9998 5666655      667888766544321  1111  00                0245788999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeeccc---------------CceeEEEEccCCCeEEEEe
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK---------------RAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~---------------~~v~~l~~sp~g~~l~t~s  433 (536)
                      +..+.++.-..+.|.+||+....  .........-.               ..-..+.++|+|++|+++.
T Consensus       332 GrfLYVSnrg~d~VavfdV~d~~--~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDISNPF--KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECSSTT--SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEecCCC--CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            96555555557899999986432  11222222111               1358899999999998887

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.83  E-value=1.4e-05  Score=87.49  Aligned_cols=236  Identities=13%  Similarity=0.117  Sum_probs=150.8

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      |.++...+  ++.+.+ |+.++.|..|+..+.    ..... ...+...|.++...+++  .|..++.++-|.+||..++
T Consensus       175 i~~i~~d~--~g~lwi-gt~~~Gl~~~~~~~~----~~~~~~~~~~~~~i~~i~~d~~g--~lwigt~~~Gl~~~~~~~~  245 (795)
T 4a2l_A          175 IASTLYRQ--GDQIYI-GTSTDGLYTYSITQK----TFEKVIPILGTKQIQAILQQSPT--RIWVATEGAGLFLINPKTK  245 (795)
T ss_dssp             CEEEEEEE--TTEEEE-EESSSCEEEEETTTC----CEEECC----CCCEEEEEEEETT--EEEEEEBSSCEEEEETTTT
T ss_pred             eEEEEECC--CCCEEE-EECCCCEEEEeCCCC----eEEEecCCCCCCeeEEEEEcCCC--CEEEEECCCCeEEEeCCCC
Confidence            88999888  776555 665556889997652    21111 11235678888887775  5666665545899999887


Q ss_pred             eEEEeecC--------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-------ccCCCeEEEEEecCCC
Q 009380          316 VFDLVYSS--------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-------LHEARINTIDFNPRNP  380 (536)
Q Consensus       316 ~~~~~~~~--------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~h~~~i~~i~~~p~~~  380 (536)
                      .+......        ...|.++...+++  .|.+|+.+ .|.+||..++.......       .....|.+|...++|.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g--~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~  322 (795)
T 4a2l_A          246 EIKNYLHSPSNPKSISSNYIRSLAMDSQN--RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG  322 (795)
T ss_dssp             EEEEECCCTTCTTSCSCSBEEEEEECTTS--CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC
T ss_pred             eEEEeecCCCCccccCCCeEEEEEEcCCC--CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC
Confidence            66544321        3568999988876  46667766 68999987665322211       1335799999988763


Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCCCCcceee-------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          381 NIMATSSTDGTACIWDLRSMATDKPEPMKVL-------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       381 ~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                        |..|+.++-|..|+.....     .....       -....|.++..+++|. |..|+.++-|..||..+..... +.
T Consensus       323 --lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~-~~  393 (795)
T 4a2l_A          323 --MWLGTYFGGLNYYHPIRNR-----FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTS-YT  393 (795)
T ss_dssp             --EEEEESSSCEEEECGGGGS-----SEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEE-EC
T ss_pred             --EEEEECCCCeEEeCCCccc-----ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEE-Ee
Confidence              5567777779999876532     11111       1245699999998887 5567777679999987654322 21


Q ss_pred             ccC------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          454 HNN------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       454 ~~~------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      ...      .....+.  .+...++|..|.+|+.++.|.+||..+++.
T Consensus       394 ~~~~~~~~~l~~~~v~--~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          394 LQEDESARGIGSNNIK--AVYVDEKKSLVYIGTHAGGLSILHRNSGQV  439 (795)
T ss_dssp             CC------CCSCSCEE--EEEEETTTTEEEEEETTTEEEEEETTTCCE
T ss_pred             cCCCCcccCCCCccEE--EEEEcCCCCEEEEEeCcCceeEEeCCCCcE
Confidence            110      1122233  344567777577888777799999887643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.82  E-value=1.6e-06  Score=84.05  Aligned_cols=239  Identities=8%  Similarity=-0.002  Sum_probs=144.5

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc--------------------CCCCEEEEEEecCCCC
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--------------------HLGPISGIVTQQYCLS  296 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--------------------h~~~V~~l~~~~~~~~  296 (536)
                      ..+++|.+  ++.+++++..++.|..|+....     .+..+..                    ....+..+++.+++ .
T Consensus        21 p~~i~~d~--~g~~l~v~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g   92 (322)
T 2fp8_A           21 PNSFTFDS--TNKGFYTSVQDGRVIKYEGPNS-----GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-N   92 (322)
T ss_dssp             CCCEECCT--TCSSEEEECTTSEEEEECCTTT-----CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-T
T ss_pred             ceEEEEcC--CCCEEEEEcCCCeEEEECCCCC-----ceEEEecccccccccccccccchhccccCCCCceEEEcCCC-C
Confidence            56778888  8887888888899999987642     2222211                    11357899999733 4


Q ss_pred             EEEEEECCCeEEEEECCCCeEEEeecC-----CCceeEEEecC-CCCCEEEEEEC-----------------CCeEEEEE
Q 009380          297 KIFTSCYDGLIRLMDAEKEVFDLVYSS-----EYAVFSLSQQP-NNVNTLYFGEG-----------------QGGLNIWD  353 (536)
Q Consensus       297 ~l~s~s~dg~I~vwd~~~~~~~~~~~~-----~~~i~~l~~~~-~~~~~l~~g~~-----------------dg~i~i~d  353 (536)
                      .|+.+...+.|..+|..++....+...     ......+++.+ ++ ++.++-..                 +|.|..||
T Consensus        93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEe
Confidence            566666666688999876654333211     13467899999 77 55544322                 36799999


Q ss_pred             CCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380          354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       354 ~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      ..+++...... .....+.|+|+|++..++++-...+.|.+|++......  ....+....+ ...++++++|+++++..
T Consensus       172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~~~g-P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVKIPN-PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT--CEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC--ccceEEeCCC-CCCeEECCCCCEEEEec
Confidence            87665422222 22345679999987434555566689999998753211  1111111223 78899999998666654


Q ss_pred             C----------CCcEEEEeCCCCCcceEEeccCCC-CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          434 F----------DDTIGIWSGVNFENTSMIHHNNQT-GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       434 ~----------dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      .          .+.|..+|.. ++.+..+...... ...++.  +++ .++.++++...++.|.++++..
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~--~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQ--IQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCE--EEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             CcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceE--EEE-eCCEEEEeecCCCceEEEeccc
Confidence            4          4668888863 5555555432111 122222  233 3555555555667888887653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.80  E-value=5.4e-07  Score=82.86  Aligned_cols=194  Identities=10%  Similarity=0.003  Sum_probs=127.6

Q ss_pred             EEEeecCCCc--eeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeE--EEEEecCCCCEEEEEeCCCcE
Q 009380          317 FDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARIN--TIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       317 ~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~--~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      ....+.|+..  ...+.|+. + .++.+.+.+|.|+++|+.+++.+..+ .. ....  .+++.  +..+.+..-.++.+
T Consensus        45 Vv~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred             EEEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEE
Confidence            3444556543  36788873 2 56666677889999999999998887 33 3333  35554  54677777778999


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee-eeEEEEcC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS-SFRAIWGW  471 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~  471 (536)
                      .+||..+++     .+........-+.++  +++..|+.+..++.|.++|..+++....+..... +..+. ...+.|. 
T Consensus       119 ~V~D~~Tl~-----~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~-  189 (268)
T 3nok_A          119 FTWSGMPPQ-----RERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA-  189 (268)
T ss_dssp             EEEETTTTE-----EEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-
T ss_pred             EEEECCcCc-----EEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-
Confidence            999999863     333332223334444  5678888877889999999999988877754321 11111 1123444 


Q ss_pred             CCCEEEEEcCCCcEEEEcCCccccceeccCC-----------ceeeeeeeEeecCCCCCEEEEEc
Q 009380          472 DDSCVFIGNMTRTVEVISPAQRRSVATLQSP-----------YISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-----------~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      +|..++..-.+..|.+.|..+++.+..+...           ....+...++++|....+++||-
T Consensus       190 dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          190 NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            6755554546789999999999988777642           11235567999997667777764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.80  E-value=3e-05  Score=84.99  Aligned_cols=299  Identities=8%  Similarity=0.047  Sum_probs=171.9

Q ss_pred             cccccccceEEecccccCccccc-------cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-
Q 009380          208 TEKIEVGSCVDIGSLTLKPENIA-------RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-  279 (536)
Q Consensus       208 ~~~~~~dg~v~lw~~~~~~~~~~-------~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-  279 (536)
                      +|-+..++.|..++.........       ......|.++...+  +|. |..|+.++-|..|+..+.    . ...+. 
T Consensus       323 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~--~g~-lWiGt~~~Gl~~~~~~~~----~-~~~~~~  394 (795)
T 4a2l_A          323 MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK--DKN-LWIGTNDGGLNLYNPITQ----R-FTSYTL  394 (795)
T ss_dssp             EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT--TSC-EEEEESSSCEEEECTTTC----C-EEEECC
T ss_pred             EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC--CCC-EEEEECCCCeEEEcCCCC----c-EEEEec
Confidence            34444555666666432211111       11245699998877  665 555777778999998752    2 22221 


Q ss_pred             --------cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-----CCCceeEEEecCCCCCEEEEEECC
Q 009380          280 --------THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-----SEYAVFSLSQQPNNVNTLYFGEGQ  346 (536)
Q Consensus       280 --------~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-----~~~~i~~l~~~~~~~~~l~~g~~d  346 (536)
                              .....|.++...+++ ..|..|+.++-|.+||..++.+.....     ....|.++...+++  .|.+|+. 
T Consensus       395 ~~~~~~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lwigt~-  470 (795)
T 4a2l_A          395 QEDESARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG--NLWLGTL-  470 (795)
T ss_dssp             C------CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS--CEEEEES-
T ss_pred             CCCCcccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC--CEEEEec-
Confidence                    124579999988876 647888887889999999887665432     24578899888776  4566666 


Q ss_pred             CeEEEEECCCCccceeEe------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc--ceeecccCcee
Q 009380          347 GGLNIWDVRSRKSATEWL------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP--MKVLSHKRAVH  418 (536)
Q Consensus       347 g~i~i~d~~~~~~~~~~~------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~--~~~~~~~~~v~  418 (536)
                      +.|.+||..+++......      .....|.++...+++ .+.+ |+. +-|..||..+... ....  .........|.
T Consensus       471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWi-gt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~  546 (795)
T 4a2l_A          471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHK-RLWI-GGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTN  546 (795)
T ss_dssp             SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTC-CEEE-EES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEE
T ss_pred             CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCC-CEEE-EeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeE
Confidence            469999987765322111      123678999988877 3443 444 4588898765321 0000  00012345789


Q ss_pred             EEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEec-cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce
Q 009380          419 SAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH-NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA  497 (536)
Q Consensus       419 ~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~  497 (536)
                      ++..+++|.+.+. +.. -|..||..+.+. ..+.. .......+  ..+..+++|.+.+++ . +.|..|+..+++. .
T Consensus       547 ~i~~d~~g~lWig-T~~-Gl~~~d~~~~~~-~~~~~~~gl~~~~i--~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~-~  618 (795)
T 4a2l_A          547 CIYEASNGIIWVG-TRE-GFYCFNEKDKQI-KRYNTTNGLPNNVV--YGILEDSFGRLWLST-N-RGISCFNPETEKF-R  618 (795)
T ss_dssp             EEEECTTSCEEEE-ESS-CEEEEETTTTEE-EEECGGGTCSCSCE--EEEEECTTSCEEEEE-T-TEEEEEETTTTEE-E
T ss_pred             EEEECCCCCEEEE-eCC-CceeECCCCCcE-EEeCCCCCCchhhe--EEEEECCCCCEEEEc-C-CceEEEcCCCCcE-E
Confidence            9999999885544 444 488899765432 22221 11112223  235567777665554 3 4577888776543 2


Q ss_pred             eccCC---ceeee-eeeEeecCCCCCEEEEEccCCeEEE
Q 009380          498 TLQSP---YISAI-PCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       498 ~l~~~---~~~~~-~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                      .+...   ..... ..++...+ + ..|..|+.+|.+++
T Consensus       619 ~~~~~dGl~~~~f~~~~~~~~~-~-G~l~~g~~~Gl~~~  655 (795)
T 4a2l_A          619 NFTESDGLQSNQFNTASYCRTS-V-GQMYFGGINGITTF  655 (795)
T ss_dssp             EECGGGTCSCSCEEEEEEEECT-T-SCEEEEETTEEEEE
T ss_pred             EcCCcCCCccccCccCceeECC-C-CeEEEecCCceEEE
Confidence            22211   11111 12333343 4 45666666775543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.79  E-value=6e-07  Score=82.57  Aligned_cols=193  Identities=11%  Similarity=0.091  Sum_probs=124.1

Q ss_pred             EEeecCCCc--eeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccCCCeE--EEEEecCCCCEEEEEeCCCc
Q 009380          318 DLVYSSEYA--VFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEARIN--TIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       318 ~~~~~~~~~--i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~~i~--~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ...+.|+..  ...+.|+ ++ .++.+.+.+|  .|+++|+.+++.+..+.... ...  .+++.  +..+.+..-.++.
T Consensus        34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~  108 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSE
T ss_pred             EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCE
Confidence            344566544  4788888 44 5555666655  89999999999988887433 333  34544  5456666666899


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEc
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWG  470 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s  470 (536)
                      +.+||..+.+     ..........-..+  ++++..|+.+..++.|.++|..+++....+.... .+..+..+ .+.|.
T Consensus       109 v~v~D~~t~~-----~~~ti~~~~eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~lNELe~~  180 (262)
T 3nol_A          109 GFVWNIRNLR-----QVRSFNYDGEGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPELNELEWV  180 (262)
T ss_dssp             EEEEETTTCC-----EEEEEECSSCCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCEEEEEEE
T ss_pred             EEEEECccCc-----EEEEEECCCCceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccccccceeEEE
Confidence            9999999864     33333222222333  4567777777778889999999998887775421 11121111 13354


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceeccCC----------ceeeeeeeEeecCCCCCEEEEE
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSP----------YISAIPCRFHAHPHQVGTLAGA  524 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~----------~~~~~~~~~~~~p~~~~~lasg  524 (536)
                       +|..++..-.++.|.+.|..+++.+..+...          ....+...++++|....++++|
T Consensus       181 -~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          181 -DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             -TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             -CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence             6755555556789999999999988777642          1123556789999654555555

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.78  E-value=2.5e-06  Score=82.59  Aligned_cols=235  Identities=11%  Similarity=0.024  Sum_probs=144.3

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC--------------------CCceeEEEecCCCCCEEEEE
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS--------------------EYAVFSLSQQPNNVNTLYFG  343 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~--------------------~~~i~~l~~~~~~~~~l~~g  343 (536)
                      ...+++|.+++ ++++++..++.|..||..++........                    ...+..+++.+++ ..|+++
T Consensus        20 ~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~-g~l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN-NQLYIV   97 (322)
T ss_dssp             CCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT-TEEEEE
T ss_pred             CceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCC-CcEEEE
Confidence            35678899987 7788888999999999887655433210                    1357889999733 356667


Q ss_pred             ECCCeEEEEECCCCccceeEec-----cCCCeEEEEEec-CCCCEEEEEeC-----------------CCcEEEEeCCCC
Q 009380          344 EGQGGLNIWDVRSRKSATEWLL-----HEARINTIDFNP-RNPNIMATSST-----------------DGTACIWDLRSM  400 (536)
Q Consensus       344 ~~dg~i~i~d~~~~~~~~~~~~-----h~~~i~~i~~~p-~~~~~l~s~s~-----------------dg~i~iwdl~~~  400 (536)
                      ...+.|..+|..++.. ..+..     .....+.+++.+ +| ++.++-..                 ++.|..||..++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            6666789998775542 22221     123578899999 77 55555432                 367888887653


Q ss_pred             CCCCCCcceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCC--cceEEeccCCCCceeeeeEEEEcCCCCEEE
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFE--NTSMIHHNNQTGRWISSFRAIWGWDDSCVF  477 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~  477 (536)
                      .     .......-...+.++|+|+|+.|+.+ +..+.|.+|++....  ....+..  ..+    .-.++++++|.+++
T Consensus       176 ~-----~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g----P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          176 E-----TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN----PGNIKRNADGHFWV  244 (322)
T ss_dssp             E-----EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS----EEEEEECTTSCEEE
T ss_pred             E-----EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC----CCCeEECCCCCEEE
Confidence            2     22222222455789999999866655 556889999987532  1122221  112    12256788998666


Q ss_pred             EEcC----------CCcEEEEcCCccccceeccCCce--eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          478 IGNM----------TRTVEVISPAQRRSVATLQSPYI--SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       478 ~gs~----------dg~I~v~d~~~~~~~~~l~~~~~--~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +...          .+.|..+|.. ++.+..+.....  ......+.+.  ++.++++....+.|.+++++
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC-
T ss_pred             EecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecc
Confidence            6544          4678888875 556655543321  0111233342  44566666678889888763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.77  E-value=3.2e-06  Score=88.65  Aligned_cols=236  Identities=8%  Similarity=0.060  Sum_probs=148.2

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----CCEEE-EEEecCCCCEEEEEEC------CCeEEEEECCCCe
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----GPISG-IVTQQYCLSKIFTSCY------DGLIRLMDAEKEV  316 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~  316 (536)
                      +..|++++.|+.|..+|..+    ++.+..+....    ..+.+ ...  .+ ..++.++.      ++.|..+|..+++
T Consensus       115 ~~~v~v~~~dg~l~alD~~t----G~~~W~~~~~~~~~~~~~~~~P~v--~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~  187 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKT----GKINWEVEVCDPKVGSTLTQAPFV--AK-DTVLMGCSGAELGVRGAVNAFDLKTGE  187 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTT----CCEEEEEECCCGGGTCBCCSCCEE--ET-TEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred             CCEEEEEeCCCEEEEEECCC----CCEEEEecCCCCCccceeccCCEE--EC-CEEEEEecCCccCCCCEEEEEECCCCc
Confidence            45777888899999999987    55554433211    01111 111  13 46666665      7999999999988


Q ss_pred             EEEeecCCCce---------------------------------------eEEEecCCCCCEEEEEECC-----------
Q 009380          317 FDLVYSSEYAV---------------------------------------FSLSQQPNNVNTLYFGEGQ-----------  346 (536)
Q Consensus       317 ~~~~~~~~~~i---------------------------------------~~l~~~~~~~~~l~~g~~d-----------  346 (536)
                      ....+......                                       ..+++.+.. ..+++++.+           
T Consensus       188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~g  266 (571)
T 2ad6_A          188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPG  266 (571)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCS
T ss_pred             EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCC
Confidence            76554332211                                       134566655 577777642           


Q ss_pred             -----CeEEEEECCCCccceeEec--cC--------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380          347 -----GGLNIWDVRSRKSATEWLL--HE--------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       347 -----g~i~i~d~~~~~~~~~~~~--h~--------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~~~~  409 (536)
                           +.|..+|..+++.+..++.  |.        .++. +....+|.  .+++.++.+|.++++|..+++.    +..
T Consensus       267 d~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~----~w~  341 (571)
T 2ad6_A          267 DNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNL----IVA  341 (571)
T ss_dssp             CCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCE----EEE
T ss_pred             CceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCE----Eee
Confidence                 3699999999998877763  21        1221 22223452  3677888899999999988752    111


Q ss_pred             ee-cc------------cCce--------------------------eEEEEccCCCeEEEEe-----------------
Q 009380          410 VL-SH------------KRAV--------------------------HSAYFSPSGSSLATTS-----------------  433 (536)
Q Consensus       410 ~~-~~------------~~~v--------------------------~~l~~sp~g~~l~t~s-----------------  433 (536)
                      .. ..            ..++                          ..++|+|+..+|++.+                 
T Consensus       342 ~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g  421 (571)
T 2ad6_A          342 EKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG  421 (571)
T ss_dssp             EESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred             ecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccC
Confidence            10 00            0011                          3467888777666653                 


Q ss_pred             --------------------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          434 --------------------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       434 --------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                                          .++.|..||+.+++....+........      ......+..+++++.|+.|++||..++
T Consensus       422 ~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~------~~~~t~gg~v~~g~~dg~l~a~D~~tG  495 (571)
T 2ad6_A          422 QFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG------GTLYTKGGLVWYATLDGYLKALDNKDG  495 (571)
T ss_dssp             SCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS------BCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             CccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc------eeEEECCCEEEEEcCCCeEEEEECCCC
Confidence                                347899999999988777654322110      111224567888999999999999999


Q ss_pred             ccceeccCC
Q 009380          494 RSVATLQSP  502 (536)
Q Consensus       494 ~~~~~l~~~  502 (536)
                      +.+.++...
T Consensus       496 ~~lw~~~~~  504 (571)
T 2ad6_A          496 KELWNFKMP  504 (571)
T ss_dssp             CEEEEEECS
T ss_pred             CEEEEEeCC
Confidence            999888754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.77  E-value=4.3e-06  Score=87.69  Aligned_cols=271  Identities=11%  Similarity=0.055  Sum_probs=159.2

Q ss_pred             cEEEEEeC-CCcEEEEEC-CCCCCCCCceEEeccCCC-----------CEEEEEEecCCCCE----EEEEECCCeEEEEE
Q 009380          249 RMVVAGSK-LGNITFWNL-DSQQDEDNGIYLFRTHLG-----------PISGIVTQQYCLSK----IFTSCYDGLIRLMD  311 (536)
Q Consensus       249 ~~l~tg~~-dg~v~iwd~-~~~~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~----l~s~s~dg~I~vwd  311 (536)
                      ..|++++. ++.|.-+|. .+    ++.+-.+.....           ....+++.|.+ ..    |+.++.|+.|..+|
T Consensus        63 g~vyv~~~~~~~v~AlD~~~t----G~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g~~~~rV~v~t~dg~l~AlD  137 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDP----GTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-GKTPALILKTQLDGNVAALN  137 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCT----TSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-SSSCCEEEEECTTSEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEeCCCC----CcEEEEECCCCCccccccccccccccceEEEecC-CcceeEEEEEcCCCEEEEEE
Confidence            45555666 788888888 66    455544433211           01234554443 44    88899999999999


Q ss_pred             CCCCeEEEeecCCC-----ceeE-EEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCC----------
Q 009380          312 AEKEVFDLVYSSEY-----AVFS-LSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEAR----------  369 (536)
Q Consensus       312 ~~~~~~~~~~~~~~-----~i~~-l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~----------  369 (536)
                      ..+++.........     .+.+ -.+. +  ..+++++.      +|.|+.+|..+++.+..+......          
T Consensus       138 a~TG~~~W~~~~~~~~~~~~~~ssP~v~-~--g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~  214 (599)
T 1w6s_A          138 AETGETVWKVENSDIKVGSTLTIAPYVV-K--DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN  214 (599)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCCSCCEEE-T--TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             CCCCCEEEeecCCCCCccceeecCCEEE-C--CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence            99998765543222     2221 1111 2  36666653      799999999999987766532111          


Q ss_pred             ---------------------------e-EEEEEecCCCCEEEEEeCC----------------CcEEEEeCCCCCCCCC
Q 009380          370 ---------------------------I-NTIDFNPRNPNIMATSSTD----------------GTACIWDLRSMATDKP  405 (536)
Q Consensus       370 ---------------------------i-~~i~~~p~~~~~l~s~s~d----------------g~i~iwdl~~~~~~~~  405 (536)
                                                 + ..+++.+.. .+++.+..+                +.|..+|..+++    
T Consensus       215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~----  289 (599)
T 1w6s_A          215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE----  289 (599)
T ss_dssp             TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC----
T ss_pred             cccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc----
Confidence                                       0 134555655 466666554                378999999875    


Q ss_pred             Ccceee--cccC-------ceeEEEEc-cCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccC----------CCCcee
Q 009380          406 EPMKVL--SHKR-------AVHSAYFS-PSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNN----------QTGRWI  462 (536)
Q Consensus       406 ~~~~~~--~~~~-------~v~~l~~s-p~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~  462 (536)
                      ..-...  .|..       ...-+... .+|   ..++.++.+|.+.++|..+++.+.......          ..++.+
T Consensus       290 ~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~  369 (599)
T 1w6s_A          290 AKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPV  369 (599)
T ss_dssp             EEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEE
T ss_pred             eeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCcee
Confidence            222222  2211       11112222 467   467778899999999999998876654221          111111


Q ss_pred             e-------------e-----------eEEEEcCCCCEEEEE---------------------------------c-----
Q 009380          463 S-------------S-----------FRAIWGWDDSCVFIG---------------------------------N-----  480 (536)
Q Consensus       463 ~-------------~-----------~~~~~s~~g~~l~~g---------------------------------s-----  480 (536)
                      .             .           -.++++|+..++++.                                 +     
T Consensus       370 ~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~  449 (599)
T 1w6s_A          370 RDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNY  449 (599)
T ss_dssp             ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTT
T ss_pred             eccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccC
Confidence            0             0           013456655554442                                 1     


Q ss_pred             -CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          481 -MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       481 -~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                       ..|.|..||+.+++.+.+...... .....+..   .+.++..++.||.|+.||.+
T Consensus       450 ~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t---agg~vf~gt~dg~l~A~D~~  502 (599)
T 1w6s_A          450 EGLGQIKAYNAITGDYKWEKMERFA-VWGGTMAT---AGDLVFYGTLDGYLKARDSD  502 (599)
T ss_dssp             BCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             CCcCeEEEEECCCCCEEeEecCCCC-ccCcceEe---cCCEEEEECCCCeEEEEECC
Confidence             347899999999988877653211 11011222   35788889999999999863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=1.4e-06  Score=81.12  Aligned_cols=197  Identities=12%  Similarity=0.012  Sum_probs=128.6

Q ss_pred             EEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCcc
Q 009380          285 ISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKS  359 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~  359 (536)
                      ...+.|++++ .++++.+.  ++.|+++|+.+++.........  ....+++.  + ..|+.++ .++.+.++|..+.+.
T Consensus        23 ~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g-~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           23 TQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--N-EKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             EEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--T-TEEEEEETTCSEEEEEETTTTEE
T ss_pred             cccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--C-CEEEEEEecCCEEEEEECCCCcE
Confidence            6799999985 54454443  6899999999998776654333  22345554  4 3555554 578999999999998


Q ss_pred             ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--ccc---CceeEEEEccCCCeEEEEeC
Q 009380          360 ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHK---RAVHSAYFSPSGSSLATTSF  434 (536)
Q Consensus       360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~---~~v~~l~~sp~g~~l~t~s~  434 (536)
                      +.++......  ...+++++..++++ ..++.|.++|..+.+    ....+.  ...   ..++.+.|. +|..++....
T Consensus        99 ~~~i~~g~~~--g~glt~Dg~~l~vs-~gs~~l~viD~~t~~----v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~  170 (266)
T 2iwa_A           99 IKNFTHQMKD--GWGLATDGKILYGS-DGTSILYEIDPHTFK----LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQ  170 (266)
T ss_dssp             EEEEECCSSS--CCEEEECSSSEEEE-CSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEEECCCCC--eEEEEECCCEEEEE-CCCCeEEEEECCCCc----EEEEEEECCCCcccccceeEEEE-CCEEEEecCC
Confidence            8888632111  23455677555555 468899999998853    222222  111   236788888 7765555556


Q ss_pred             CCcEEEEeCCCCCcceEEeccC--------CCCceeeeeEEEEcCCCCEEE-EEcCCCcEEEEcCCcc
Q 009380          435 DDTIGIWSGVNFENTSMIHHNN--------QTGRWISSFRAIWGWDDSCVF-IGNMTRTVEVISPAQR  493 (536)
Q Consensus       435 dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~g~~l~-~gs~dg~I~v~d~~~~  493 (536)
                      ++.|.+.|..+++....+....        ..........++|+++++.|+ ++...+.|.+.++...
T Consensus       171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            8899999999999888885421        001111223478999987655 5556688888887654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.76  E-value=5.3e-06  Score=86.93  Aligned_cols=269  Identities=13%  Similarity=0.082  Sum_probs=159.7

Q ss_pred             cEEEEEeC-CCcEEEEEC-CCCCCCCCceEEeccCCC----------C-EEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          249 RMVVAGSK-LGNITFWNL-DSQQDEDNGIYLFRTHLG----------P-ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       249 ~~l~tg~~-dg~v~iwd~-~~~~~~~~~~~~~~~h~~----------~-V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      ..|++++. ++.|.-+|. .+    ++.+-.+.....          . -..+..  .+ ..++.++.|+.|..+|..++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~t----G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~v~v~~~dg~l~alD~~tG  135 (571)
T 2ad6_A           63 DMMYVHSAFPNNTYALNLNDP----GKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GA-GQIVKKQANGHLLALDAKTG  135 (571)
T ss_dssp             TEEEEECSTTTCEEEEETTCT----TSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ET-TEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEeCCCCEEEEEeCCCC----ccEEEEEcCCCCccccccccccccccccEE--EC-CEEEEEeCCCEEEEEECCCC
Confidence            34555565 788888888 66    455444432211          0 011222  23 68888999999999999999


Q ss_pred             eEEEeecCCC-----ceeE-EEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCC--------------
Q 009380          316 VFDLVYSSEY-----AVFS-LSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEAR--------------  369 (536)
Q Consensus       316 ~~~~~~~~~~-----~i~~-l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~--------------  369 (536)
                      +....+....     .+.+ .... +  ..+++++.      +|.|..+|..+++.+.++......              
T Consensus       136 ~~~W~~~~~~~~~~~~~~~~P~v~-~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~  212 (571)
T 2ad6_A          136 KINWEVEVCDPKVGSTLTQAPFVA-K--DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP  212 (571)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T--TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CEEEEecCCCCCccceeccCCEEE-C--CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence            8765543222     2221 1111 2  46777765      789999999999987766532110              


Q ss_pred             ------------------------eEEEEEecCCCCEEEEEeCC----------------CcEEEEeCCCCCCCCCCcce
Q 009380          370 ------------------------INTIDFNPRNPNIMATSSTD----------------GTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       370 ------------------------i~~i~~~p~~~~~l~s~s~d----------------g~i~iwdl~~~~~~~~~~~~  409 (536)
                                              ...+++.+.. ..++.+..+                +.|..+|..+++    ..-.
T Consensus       213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~----~~W~  287 (571)
T 2ad6_A          213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM----AKWG  287 (571)
T ss_dssp             GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC----EEEE
T ss_pred             cccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCc----EEEE
Confidence                                    0135566654 355555432                258999999875    2222


Q ss_pred             ee--cccC-------ceeEEEEccCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccC----------CCCceee----
Q 009380          410 VL--SHKR-------AVHSAYFSPSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNN----------QTGRWIS----  463 (536)
Q Consensus       410 ~~--~~~~-------~v~~l~~sp~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~~----  463 (536)
                      ..  .|..       ...-+...++|+   .++.++.+|.+.++|..+++.+..+....          ..++.+.    
T Consensus       288 ~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~  367 (571)
T 2ad6_A          288 YQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEF  367 (571)
T ss_dssp             EESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGG
T ss_pred             ecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceeccccc
Confidence            21  1211       111122234674   57788899999999999998776654322          1111110    


Q ss_pred             ---------e-----------eEEEEcCCCCEEEEEc-------------------------------------CCCcEE
Q 009380          464 ---------S-----------FRAIWGWDDSCVFIGN-------------------------------------MTRTVE  486 (536)
Q Consensus       464 ---------~-----------~~~~~s~~g~~l~~gs-------------------------------------~dg~I~  486 (536)
                               .           -.++++|+..+|++.+                                     .++.|.
T Consensus       368 ~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~  447 (571)
T 2ad6_A          368 ATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIR  447 (571)
T ss_dssp             CCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEE
T ss_pred             CCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEE
Confidence                     0           0145777777776653                                     347899


Q ss_pred             EEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          487 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       487 v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .||..+++.+.++..... .....+..   .+..++.++.||.|+.||.+
T Consensus       448 a~D~~tG~~~W~~~~~~~-~~~~~~~t---~gg~v~~g~~dg~l~a~D~~  493 (571)
T 2ad6_A          448 AFDLTTGKAKWTKWEKFA-AWGGTLYT---KGGLVWYATLDGYLKALDNK  493 (571)
T ss_dssp             EECTTTCCEEEEEEESSC-CCSBCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             EEECCCCCEEEEecCCCC-ccceeEEE---CCCEEEEEcCCCeEEEEECC
Confidence            999999988877754221 11111222   24678889999999999863

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.75  E-value=6.2e-07  Score=82.47  Aligned_cols=191  Identities=12%  Similarity=0.066  Sum_probs=123.4

Q ss_pred             cCCCC--EEEEEEecCCCCEEEEEECCC--eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEEC
Q 009380          280 THLGP--ISGIVTQQYCLSKIFTSCYDG--LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDV  354 (536)
Q Consensus       280 ~h~~~--V~~l~~~~~~~~~l~s~s~dg--~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~  354 (536)
                      .|...  ...|.|+ ++ .++.+.+.+|  .|+++|+.+++.................+.+ +.|+..+ .++.+.+||.
T Consensus        38 phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEET
T ss_pred             cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEEC
Confidence            45443  4788998 55 6777777766  8999999999887666555555443333344 4555555 5789999999


Q ss_pred             CCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--ccc---CceeEEEEccCCCeE
Q 009380          355 RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHK---RAVHSAYFSPSGSSL  429 (536)
Q Consensus       355 ~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~---~~v~~l~~sp~g~~l  429 (536)
                      .+.+.+.++...... ..+  ++++..++++ ..++.|.++|..+.+    ....+.  ...   ..++.+.|. +|..+
T Consensus       115 ~t~~~~~ti~~~~eG-~gl--t~dg~~L~~S-dGs~~i~~iDp~T~~----v~~~I~V~~~g~~~~~lNELe~~-~G~ly  185 (262)
T 3nol_A          115 RNLRQVRSFNYDGEG-WGL--THNDQYLIMS-DGTPVLRFLDPESLT----PVRTITVTAHGEELPELNELEWV-DGEIF  185 (262)
T ss_dssp             TTCCEEEEEECSSCC-CCE--EECSSCEEEC-CSSSEEEEECTTTCS----EEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             ccCcEEEEEECCCCc-eEE--ecCCCEEEEE-CCCCeEEEEcCCCCe----EEEEEEeccCCccccccceeEEE-CCEEE
Confidence            999999888743222 233  3556445544 447789999998864    222211  122   334567776 77655


Q ss_pred             EEEeCCCcEEEEeCCCCCcceEEeccCCC-------CceeeeeEEEEcCCCCEEEEEcCC
Q 009380          430 ATTSFDDTIGIWSGVNFENTSMIHHNNQT-------GRWISSFRAIWGWDDSCVFIGNMT  482 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~~g~~l~~gs~d  482 (536)
                      +..-.++.|.+.|..+++....+......       ...-...-++|+|+++.|++.+..
T Consensus       186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            55556889999999999988888643110       000112337899988877776643

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.73  E-value=1.1e-06  Score=93.95  Aligned_cols=241  Identities=16%  Similarity=0.184  Sum_probs=152.0

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCC----CCEEE-EEEecCCCCEEEEEEC------CCeEEEEECCCCe
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----GPISG-IVTQQYCLSKIFTSCY------DGLIRLMDAEKEV  316 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~  316 (536)
                      +..|++++.|+.|..+|..+    ++.+..+....    ..+.+ ...  .+ ..++.+..      +|.|..+|..+++
T Consensus       117 ~~~v~v~~~dg~l~alD~~t----G~~~W~~~~~~~~~~~~~~~~P~v--~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~  189 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKT----GKAIWSQQTTDPAKPYSITGAPRV--VK-GKVIIGNGGAEYGVRGFVSAYDADTGK  189 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTT----CCEEEEEECSCTTSSCBCCSCCEE--ET-TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred             CCEEEEEcCCCEEEEEECCC----CCEeeeeccCCCCCcceecCCCEE--EC-CEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence            35778888899999999988    55555554321    11111 011  12 45665543      5899999999998


Q ss_pred             EEEeecCC--C------------------------------ceeEEEecCCCCCEEEEEECCCe----------------
Q 009380          317 FDLVYSSE--Y------------------------------AVFSLSQQPNNVNTLYFGEGQGG----------------  348 (536)
Q Consensus       317 ~~~~~~~~--~------------------------------~i~~l~~~~~~~~~l~~g~~dg~----------------  348 (536)
                      ....+...  .                              ....+++.+.. .++++++.++.                
T Consensus       190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~  268 (668)
T 1kv9_A          190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLY  268 (668)
T ss_dssp             EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred             EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCcee
Confidence            76554321  0                              11246777776 68888887763                


Q ss_pred             ---EEEEECCCCccceeEec--cC-------CCeEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCCCC-------c
Q 009380          349 ---LNIWDVRSRKSATEWLL--HE-------ARINTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDKPE-------P  407 (536)
Q Consensus       349 ---i~i~d~~~~~~~~~~~~--h~-------~~i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~-------~  407 (536)
                         |..+|..+++.+..++.  |.       .+.....+..++.  ..++.++.+|.++++|..+++.....       .
T Consensus       269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~  348 (668)
T 1kv9_A          269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA  348 (668)
T ss_dssp             TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred             eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence               99999999998877763  32       2222223333442  26888999999999999987521000       0


Q ss_pred             ceee-cccC------------------------ceeEEEEccCCCeEEEE------------------------------
Q 009380          408 MKVL-SHKR------------------------AVHSAYFSPSGSSLATT------------------------------  432 (536)
Q Consensus       408 ~~~~-~~~~------------------------~v~~l~~sp~g~~l~t~------------------------------  432 (536)
                      ..+. ....                        .-..++++|+..++++.                              
T Consensus       349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  428 (668)
T 1kv9_A          349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (668)
T ss_dssp             EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence            0000 0000                        01236788866655542                              


Q ss_pred             ------eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          433 ------SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       433 ------s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                            ..+|.|..||+.+++.+..........  .    ..+...+.+|++|+.|+.|++||..+++.+..+...
T Consensus       429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~--~----~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN--G----GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC--C----CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCCCCCccceEEEEeCCCCcEEEEccCCCCCc--C----ceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence                  134789999999998877765432211  0    122346779999999999999999999999888654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.71  E-value=1.1e-05  Score=77.48  Aligned_cols=229  Identities=10%  Similarity=0.046  Sum_probs=138.3

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-C-eEEEEEC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-G-LIRLMDA  312 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-g-~I~vwd~  312 (536)
                      .....++|+|  ++.++++-..++.|..|+...     .....+ ........+++.+++ +++++.... + .|..+|.
T Consensus        32 ~~pegia~~~--~g~lyv~d~~~~~I~~~d~~g-----~~~~~~-~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAP--DGTIFVTNHEVGEIVSITPDG-----NQQIHA-TVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECT--TSCEEEEETTTTEEEEECTTC-----CEEEEE-ECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECC--CCCEEEEeCCCCeEEEECCCC-----ceEEEE-eCCCCceeEEEcCCC-cEEEEeccCCcceEEEEcC
Confidence            4577899999  888877777889999998764     222222 223468899999998 655554332 2 4777787


Q ss_pred             CCCeEEEeecC--CCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCcc-ceeEe---------ccCCCeEEEEEecCC
Q 009380          313 EKEVFDLVYSS--EYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKS-ATEWL---------LHEARINTIDFNPRN  379 (536)
Q Consensus       313 ~~~~~~~~~~~--~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~-~~~~~---------~h~~~i~~i~~~p~~  379 (536)
                      .++....+...  ......++..+.+  .+++.. .+|.|+++|..+++. +....         ..-...+.|  +|++
T Consensus       103 ~~g~~~~~~~~~~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg  178 (306)
T 2p4o_A          103 SDGTVETLLTLPDAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG  178 (306)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred             CCCeEEEEEeCCCccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence            77776544432  2233455554443  445444 588999999875421 11100         111234566  7777


Q ss_pred             CCEEEEEeCCCcEEEEeCCC-CCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380          380 PNIMATSSTDGTACIWDLRS-MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      ..++++-...+.|..||+.. +..   ..............++++++|+++++....+.|.+||.. ++.......... 
T Consensus       179 ~~lyv~d~~~~~I~~~~~~~~g~~---~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~-  253 (306)
T 2p4o_A          179 NFLYVSNTEKMLLLRIPVDSTDKP---GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG-  253 (306)
T ss_dssp             TEEEEEETTTTEEEEEEBCTTSCB---CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT-
T ss_pred             CEEEEEeCCCCEEEEEEeCCCCCC---CccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc-
Confidence            55666666778999999875 211   111122112456779999999877777778899999974 433221111111 


Q ss_pred             CceeeeeEEEEc---CCCCEEEEEcCCC
Q 009380          459 GRWISSFRAIWG---WDDSCVFIGNMTR  483 (536)
Q Consensus       459 ~~~~~~~~~~~s---~~g~~l~~gs~dg  483 (536)
                      ....  ..++|.   +++..|++.+..+
T Consensus       254 ~~~p--~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          254 VIGS--TAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CTTE--EEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCc--eEEEEecccCCCCEEEEECCCC
Confidence            1122  236677   7877777766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.71  E-value=2.6e-06  Score=77.62  Aligned_cols=195  Identities=9%  Similarity=0.010  Sum_probs=124.7

Q ss_pred             EEEeecCCC--ceeEEEecCCCCCEEEEEECC--CeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEEEEeCCCc
Q 009380          317 FDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       317 ~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ....+.|+.  -...+.|+. + .++.+.+.+  ..|+.+|+.+++.+..+...... --.+++.  +..++...-.++.
T Consensus        11 v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~   86 (243)
T 3mbr_X           11 VVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred             EEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence            344456653  455889986 3 444555554  48999999999998887643322 1334544  4456666667899


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCC--CCceeeeeEEEE
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQ--TGRWISSFRAIW  469 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~  469 (536)
                      +.+||..+.+     ..........-..++  +++..|+.+..++.|.++|..+.+....+.....  .-..+.-  +.|
T Consensus        87 v~v~D~~tl~-----~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe--Le~  157 (243)
T 3mbr_X           87 GFVYDLATLT-----PRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE--LEW  157 (243)
T ss_dssp             EEEEETTTTE-----EEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE--EEE
T ss_pred             EEEEECCcCc-----EEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee--eEE
Confidence            9999998863     333333333334444  5677777777789999999999988877753221  1111222  333


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCCccccceeccCC-----------ceeeeeeeEeecCCCCCEEEEEc
Q 009380          470 GWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP-----------YISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-----------~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      . +|..++..-.+..|.+.|..+++.+..+...           ....+...++++|....++++|-
T Consensus       158 ~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          158 V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            3 6655555546789999999999988776532           12235567899996655666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.70  E-value=4.5e-05  Score=74.66  Aligned_cols=208  Identities=11%  Similarity=-0.016  Sum_probs=132.1

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ..+..++|++. ++.++++-...+.|..+++..    ......+.........+++.+.+..++++-...+.|.+.++..
T Consensus        73 ~~~~~l~~d~~-~~~ly~~D~~~~~I~r~~~~g----~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           73 ENAIALDFHHR-RELVFWSDVTLDRILRANLNG----SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEecc-ccEEEEEeccCCceEEEecCC----CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence            45789999973 445555555678899999875    2222222222344578999886635555556678999999987


Q ss_pred             CeEEEeec-CCCceeEEEecCCCCCEEEEEECC-CeEEEEECCCCccceeE-eccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          315 EVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRKSATEW-LLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       315 ~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      .....+.. .-.....+++.|.+..++++-... +.|..+++.... ...+ .......+.|+++|++..++++-...+.
T Consensus       148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~  226 (349)
T 3v64_C          148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV  226 (349)
T ss_dssp             CSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCE
Confidence            65444432 335678999999763444444444 789999876433 2232 2233457899999877666666666788


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      |..+|+....    ..............+++ ..+.++++-...+.|..++..+++....+.
T Consensus       227 I~~~~~dG~~----~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          227 IERANLDGSH----RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTSCS----CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEEeCCCCc----eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            9999987521    11111122345567777 345555565567788888876776666654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.68  E-value=2.7e-05  Score=77.44  Aligned_cols=209  Identities=11%  Similarity=0.016  Sum_probs=132.8

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...+..++|++. ++.++++-...+.|..+++..    ......+.........+++.+.+..++++-...+.|.+.++.
T Consensus       115 ~~~~~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g----~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d  189 (386)
T 3v65_B          115 LENAIALDFHHR-RELVFWSDVTLDRILRANLNG----SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD  189 (386)
T ss_dssp             CSCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred             CCccEEEEEecC-CCeEEEEeCCCCcEEEEecCC----CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence            456889999972 445555656678899999875    222222222233456788988663555555667889999987


Q ss_pred             CCeEEEeec-CCCceeEEEecCCCCCEEEEEE-CC-CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          314 KEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGE-GQ-GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       314 ~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~-~d-g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      ......+.. .-.....+++.|.+ ..|+... .. +.|..+++................+.|+|+|++..++++-+..+
T Consensus       190 g~~~~~l~~~~l~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~  268 (386)
T 3v65_B          190 GAHRKVLLWQSLEKPRAIALHPME-GTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH  268 (386)
T ss_dssp             SCSCEEEECSSCSCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT
T ss_pred             CCceEEeecCCCCCCcEEEEEcCC-CeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC
Confidence            654444333 33567899999877 4555544 44 68999987643322222233445789999987766666666678


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      .|..+|+....    ..............+++ ..+.++++-...+.|..+|..+++....+.
T Consensus       269 ~I~~~d~dG~~----~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          269 VIERANLDGSH----RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEEECTTSCS----CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEEEeCCCCe----eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            89999986521    11111122345567777 345556666667889999876777666664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.68  E-value=1.1e-05  Score=84.55  Aligned_cols=237  Identities=10%  Similarity=0.067  Sum_probs=144.8

Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCceEEeccCC----CCEEE-EEEecCCCCEEEEEE------CCCeEEEEECCCCeEEE
Q 009380          251 VVAGSKLGNITFWNLDSQQDEDNGIYLFRTHL----GPISG-IVTQQYCLSKIFTSC------YDGLIRLMDAEKEVFDL  319 (536)
Q Consensus       251 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~----~~V~~-l~~~~~~~~~l~s~s------~dg~I~vwd~~~~~~~~  319 (536)
                      |++++.|+.|..+|..+    ++.+.......    ..+.+ -... +  ..++.++      .+|.|+.+|..+++...
T Consensus       124 V~v~t~dg~l~AlDa~T----G~~~W~~~~~~~~~~~~~~ssP~v~-~--g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W  196 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAET----GETVWKVENSDIKVGSTLTIAPYVV-K--DKVIIGSSGAELGVRGYLTAYDVKTGEQVW  196 (599)
T ss_dssp             EEEECTTSEEEEEETTT----CCEEEEEECCCGGGTCBCCSCCEEE-T--TEEEECCBCGGGTCCCEEEEEETTTCCEEE
T ss_pred             EEEEcCCCEEEEEECCC----CCEEEeecCCCCCccceeecCCEEE-C--CEEEEEecccccCCCCeEEEEECCCCcEEE
Confidence            77888899999999987    45554433211    01111 1111 3  4566655      38999999999998765


Q ss_pred             eecCCCce---------------------------------------eEEEecCCCCCEEEEEECC--------------
Q 009380          320 VYSSEYAV---------------------------------------FSLSQQPNNVNTLYFGEGQ--------------  346 (536)
Q Consensus       320 ~~~~~~~i---------------------------------------~~l~~~~~~~~~l~~g~~d--------------  346 (536)
                      .+....+.                                       ..+++.+.. .++++++.+              
T Consensus       197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~  275 (599)
T 1w6s_A          197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNK  275 (599)
T ss_dssp             EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCT
T ss_pred             EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCcc
Confidence            55432211                                       134555665 688888765              


Q ss_pred             --CeEEEEECCCCccceeEeccCC----------CeEEEEEe-cCCC--CEEEEEeCCCcEEEEeCCCCCCCCCCcce--
Q 009380          347 --GGLNIWDVRSRKSATEWLLHEA----------RINTIDFN-PRNP--NIMATSSTDGTACIWDLRSMATDKPEPMK--  409 (536)
Q Consensus       347 --g~i~i~d~~~~~~~~~~~~h~~----------~i~~i~~~-p~~~--~~l~s~s~dg~i~iwdl~~~~~~~~~~~~--  409 (536)
                        +.|..+|..+++.+..++....          ++. +... .++.  ..++.++.+|.++++|..+++........  
T Consensus       276 y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~  354 (599)
T 1w6s_A          276 WTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDT  354 (599)
T ss_dssp             TSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCC
Confidence              3899999999998877763211          121 2222 3342  46777889999999999887521000000  


Q ss_pred             ------ee-cccC--------------------------ceeEEEEccCCCeEEEEe-----------------------
Q 009380          410 ------VL-SHKR--------------------------AVHSAYFSPSGSSLATTS-----------------------  433 (536)
Q Consensus       410 ------~~-~~~~--------------------------~v~~l~~sp~g~~l~t~s-----------------------  433 (536)
                            +. ....                          .-..++++|+..++++..                       
T Consensus       355 ~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~  434 (599)
T 1w6s_A          355 VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGA  434 (599)
T ss_dssp             CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred             cccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecc
Confidence                  00 0000                          012456777655554421                       


Q ss_pred             ----------------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce
Q 009380          434 ----------------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA  497 (536)
Q Consensus       434 ----------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~  497 (536)
                                      .+|.|..||+.+++.+...........  .    .....+..+++++.|+.|+.||..+++.+.
T Consensus       435 ~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~--g----~~~tagg~vf~gt~dg~l~A~D~~tG~~lW  508 (599)
T 1w6s_A          435 TLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG--G----TMATAGDLVFYGTLDGYLKARDSDTGDLLW  508 (599)
T ss_dssp             EEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS--B----CEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccC--c----ceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence                            346788999988887776654321110  0    012256788889999999999999999998


Q ss_pred             eccCC
Q 009380          498 TLQSP  502 (536)
Q Consensus       498 ~l~~~  502 (536)
                      +++..
T Consensus       509 ~~~l~  513 (599)
T 1w6s_A          509 KFKIP  513 (599)
T ss_dssp             EEECS
T ss_pred             EeeCC
Confidence            88643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=4.7e-05  Score=83.23  Aligned_cols=237  Identities=12%  Similarity=0.058  Sum_probs=147.6

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec----------cCCCCEEEEEEecCCCCEEEEEE
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR----------THLGPISGIVTQQYCLSKIFTSC  302 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~----------~h~~~V~~l~~~~~~~~~l~s~s  302 (536)
                      ....|.++...+  +|. |..|+.++-|..|+....    . ...+.          .....|.++...+++  .|..|+
T Consensus       311 ~~~~v~~i~~D~--~g~-lWigt~~~Gl~~~~~~~~----~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt  380 (781)
T 3v9f_A          311 SNASARYIFQDS--FNN-IWIGTWGGGINFISNAPP----T-FHTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGT  380 (781)
T ss_dssp             SSSCEEEEEECS--SCC-EEEEEBSSCEEEECSSCC----S-CEEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEE
T ss_pred             CCCeEEEEEEeC--CCC-EEEEecCCeEEEeCCCCC----c-ceeeccCccccccCCCCCcceEEEEEcCCC--CEEEEe
Confidence            356799999887  665 556777778888887652    1 11221          123568999887765  566777


Q ss_pred             CCCeEEEEECCCCeEEEee----cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE--eccCCCeEEEEEe
Q 009380          303 YDGLIRLMDAEKEVFDLVY----SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW--LLHEARINTIDFN  376 (536)
Q Consensus       303 ~dg~I~vwd~~~~~~~~~~----~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--~~h~~~i~~i~~~  376 (536)
                      .++-|.+||..++......    .....|.++...+++  .|.+|+.++.|..+|..+++.....  ......|.++...
T Consensus       381 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d  458 (781)
T 3v9f_A          381 DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED  458 (781)
T ss_dssp             BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC
T ss_pred             CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC
Confidence            6777999998876554322    123578888888776  4667888778999998776532211  1234678998888


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-c-----ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce
Q 009380          377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-S-----HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS  450 (536)
Q Consensus       377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~-----~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~  450 (536)
                      +++  .|..|+. +-|.+||..++.     ..... .     ....|.++...++|.+. .++.++-|..||..+.+. .
T Consensus       459 ~~g--~lwigt~-~Gl~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~-~  528 (781)
T 3v9f_A          459 KNK--KIWIGTH-AGVFVIDLASKK-----VIHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLV-R  528 (781)
T ss_dssp             TTS--EEEEEET-TEEEEEESSSSS-----CCEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEE-E
T ss_pred             CCC--CEEEEEC-CceEEEeCCCCe-----EEecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeE-E
Confidence            766  3555555 458899987643     11111 1     13678999999888744 455544488898765432 2


Q ss_pred             EEeccC-CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc
Q 009380          451 MIHHNN-QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR  494 (536)
Q Consensus       451 ~~~~~~-~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~  494 (536)
                      .+.... .....+.  .+...++|.+.+ |+.+|.|..||..+++
T Consensus       529 ~~~~~~~l~~~~i~--~i~~d~~g~lWi-~T~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          529 KFNQYEGFCSNTIN--QIYRSSKGQMWL-ATGEGLVCFPSARNFD  570 (781)
T ss_dssp             EECTTTTCSCSCEE--EEEECTTSCEEE-EETTEEEEESCTTTCC
T ss_pred             EccCCCCCCCCeeE--EEEECCCCCEEE-EECCCceEEECCCCCc
Confidence            222111 1112222  344567776544 4446655888887764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=0.00011  Score=80.24  Aligned_cols=260  Identities=11%  Similarity=0.083  Sum_probs=157.0

Q ss_pred             cccccccceEEecccccCccccc----------cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE
Q 009380          208 TEKIEVGSCVDIGSLTLKPENIA----------RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL  277 (536)
Q Consensus       208 ~~~~~~dg~v~lw~~~~~~~~~~----------~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~  277 (536)
                      +|-+..++.|..++.........          ......|.++...+  ++. |..|+.++-|..|+..+.     ....
T Consensus       326 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~-lWigt~~~Gl~~~~~~~~-----~~~~  397 (781)
T 3v9f_A          326 IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--QGK-LWIGTDGGGINVFENGKR-----VAIY  397 (781)
T ss_dssp             EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT--TSC-EEEEEBSSCEEEEETTEE-----EEEC
T ss_pred             EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC--CCC-EEEEeCCCcEEEEECCCC-----eEEE
Confidence            44455566677776533221111          11245789998877  665 455666667888987642     1111


Q ss_pred             e----ccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---CCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380          278 F----RTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLN  350 (536)
Q Consensus       278 ~----~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~l~~g~~dg~i~  350 (536)
                      +    ......|.++...+++  .|..|+.++-|..+|..++.+.....   ....|.++...+++  .|.+|+. +.|.
T Consensus       398 ~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~  472 (781)
T 3v9f_A          398 NKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVF  472 (781)
T ss_dssp             C-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEE
T ss_pred             ccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCC--CEEEEEC-CceE
Confidence            1    1234568888887765  46667777779999998887665432   34678888888776  5777777 5799


Q ss_pred             EEECCCCccceeEecc-----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-c---ccCceeEEE
Q 009380          351 IWDVRSRKSATEWLLH-----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-S---HKRAVHSAY  421 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h-----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~---~~~~v~~l~  421 (536)
                      .||..+++........     ...|.++...+++ . |..|+.++-|..||..+..     ..... .   ....|.++.
T Consensus       473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~-----~~~~~~~~~l~~~~i~~i~  545 (781)
T 3v9f_A          473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-R-FWIGTFGGGVGIYTPDMQL-----VRKFNQYEGFCSNTINQIY  545 (781)
T ss_dssp             EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-C-EEEEESSSCEEEECTTCCE-----EEEECTTTTCSCSCEEEEE
T ss_pred             EEeCCCCeEEecccCcccccccceeEEEEEcCCC-C-EEEEEcCCCEEEEeCCCCe-----EEEccCCCCCCCCeeEEEE
Confidence            9998876643332222     3678999988876 3 4445544448888876531     11111 1   245788999


Q ss_pred             EccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          422 FSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       422 ~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      ..++|.+.+ ++.+|.|..||..+.+. ..+... ......+  ..+..+++|.+. .++.+| |..|+..+.
T Consensus       546 ~d~~g~lWi-~T~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i--~~i~~d~~g~lW-~~t~~G-l~~~~~~~~  612 (781)
T 3v9f_A          546 RSSKGQMWL-ATGEGLVCFPSARNFDY-QVFQRKEGLPNTHI--RAISEDKNGNIW-ASTNTG-ISCYITSKK  612 (781)
T ss_dssp             ECTTSCEEE-EETTEEEEESCTTTCCC-EEECGGGTCSCCCC--CEEEECSSSCEE-EECSSC-EEEEETTTT
T ss_pred             ECCCCCEEE-EECCCceEEECCCCCcE-EEccccCCCCCceE--EEEEECCCCCEE-EEcCCc-eEEEECCCC
Confidence            998888554 44467558898876542 233221 1111222  234556777654 444455 777777665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.60  E-value=0.00017  Score=69.37  Aligned_cols=234  Identities=12%  Similarity=0.047  Sum_probs=138.8

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC----CeEEEeec-CC
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK----EVFDLVYS-SE  324 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~----~~~~~~~~-~~  324 (536)
                      +|+.+.. ..|+..++..    ......+ .....+..++|++.+..++++-...+.|..+++.+    .....+.. .-
T Consensus         3 ~ll~~~~-~~I~~i~~~~----~~~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDR----SEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTS----CCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCC----cceEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            4444443 5689999886    2333333 33456789999987624444545568999999886    22222332 22


Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATD  403 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~  403 (536)
                      .....+++.+.+.+++++-...+.|.++|+........+.........+++.|.+..++++.... +.|..+++...   
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---  153 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---  153 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---
Confidence            45678898876534555556678999999874433222333345778999999775555555443 68888887642   


Q ss_pred             CCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEc
Q 009380          404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                        ....+. ..-...+.++++|++..|+.+. ..+.|..+|+.. .....+... ...... ..  +++. .+.++++-.
T Consensus       154 --~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P-~g--iav~-~~~ly~~d~  226 (316)
T 1ijq_A          154 --DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHP-FS--LAVF-EDKVFWTDI  226 (316)
T ss_dssp             --CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSE-EE--EEEE-TTEEEEEET
T ss_pred             --CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCc-EE--EEEE-CCEEEEEEC
Confidence              111121 2334678999999766665554 567899999864 333444221 112222 22  3333 345555666


Q ss_pred             CCCcEEEEcCCccccceec
Q 009380          481 MTRTVEVISPAQRRSVATL  499 (536)
Q Consensus       481 ~dg~I~v~d~~~~~~~~~l  499 (536)
                      ..+.|..++..+++.+..+
T Consensus       227 ~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          227 INEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TTTEEEEEETTTCCCCEEE
T ss_pred             CCCeEEEEeCCCCcceEEE
Confidence            6688998887666554444

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.59  E-value=7.5e-05  Score=73.06  Aligned_cols=244  Identities=9%  Similarity=-0.007  Sum_probs=145.7

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE-EEECCCeEEEEECCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF-TSCYDGLIRLMDAEK  314 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~-s~s~dg~I~vwd~~~  314 (536)
                      ..+|.+..+  +. +|+.+. ...|+..++..     .....+......+..++|++.. ..|+ +-...+.|..+++..
T Consensus        35 ~~~C~~~~~--~~-~ll~~~-~~~I~~i~~~g-----~~~~~~~~~~~~~~~l~~d~~~-~~ly~~D~~~~~I~r~~~~g  104 (349)
T 3v64_C           35 RRSCKALGP--EP-VLLFAN-RIDIRQVLPHR-----SEYTLLLNNLENAIALDFHHRR-ELVFWSDVTLDRILRANLNG  104 (349)
T ss_dssp             SSCEEESSS--CC-EEEEEC-BSCEEEECTTS-----CCEEEEECSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTS
T ss_pred             CCccccccc--Cc-eeEeec-ccceEEEeCCC-----CeeEEeecCCCceEEEEEeccc-cEEEEEeccCCceEEEecCC
Confidence            344555444  43 444433 34577777764     2233333334558899999876 4555 445678999999987


Q ss_pred             CeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcE
Q 009380          315 EVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTA  392 (536)
Q Consensus       315 ~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i  392 (536)
                      .....+.. .......+++.+.+.+++++-...+.|.++++........+.........|++.|.++.++++-... +.|
T Consensus       105 ~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          105 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            65444433 2345678899876645555555678999999875433222333345678999999775666666555 788


Q ss_pred             EEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380          393 CIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG  470 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  470 (536)
                      ..+++....     ...+. ..-...+.++++|++..|+.+ ...+.|..+|+... ....+.... .... ..  +++ 
T Consensus       185 ~r~~~dG~~-----~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~-~~~~~~~~~-~~~P-~g--iav-  253 (349)
T 3v64_C          185 EASSMDGSG-----RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQG-LPHP-FA--ITV-  253 (349)
T ss_dssp             EEEETTSCS-----CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSS-CSSE-EE--EEE-
T ss_pred             EEEeCCCCC-----cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC-ceEEEEeCC-CCCc-eE--EEE-
Confidence            888876521     11111 223457899999866655555 45678999998643 333332111 1111 22  333 


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      ..+..+++-...+.|..++..+++.+..+.
T Consensus       254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          254 FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            244455555566788888866665554443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.57  E-value=4.7e-06  Score=89.18  Aligned_cols=273  Identities=12%  Similarity=0.008  Sum_probs=147.1

Q ss_pred             EEEEEecCCccEEEEEeCCC-----------cEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEEC-CC
Q 009380          239 QMKFLPCSDVRMVVAGSKLG-----------NITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCY-DG  305 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg-----------~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~-dg  305 (536)
                      ++++.|. ++++++.|+.++           .+.+||..+..  ...+..+. .+.....++++..++ .+++.|+. +.
T Consensus       190 ~~av~~~-~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~  265 (656)
T 1k3i_A          190 AAAIEPT-SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAK  265 (656)
T ss_dssp             EEEEETT-TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTT
T ss_pred             eEEEEec-CCEEEEEecccccccccCCCCeEEEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCC
Confidence            5566652 667888887543           57889988743  23333332 233344567788887 88888884 56


Q ss_pred             eEEEEECCCCeEEEeecC--CCceeEEEecCCCCCEEEEEE-CC-----CeEEEEECCCCccceeE----eccCCCeEEE
Q 009380          306 LIRLMDAEKEVFDLVYSS--EYAVFSLSQQPNNVNTLYFGE-GQ-----GGLNIWDVRSRKSATEW----LLHEARINTI  373 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~--~~~i~~l~~~~~~~~~l~~g~-~d-----g~i~i~d~~~~~~~~~~----~~h~~~i~~i  373 (536)
                      .+.+||..+.........  ...-.+++..+++ .++++|+ .+     ..+.+||..+++-...-    ......-...
T Consensus       266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~  344 (656)
T 1k3i_A          266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG  344 (656)
T ss_dssp             CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTG
T ss_pred             ceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccc
Confidence            899999998876654321  1122345556666 7888888 34     46999999876432110    0000000001


Q ss_pred             EEecCCCCEEEEEeCCC---------cEEEEeCCCCCCCCCCcceeeccc---------CceeEEEEcc-CCCeEEEEeC
Q 009380          374 DFNPRNPNIMATSSTDG---------TACIWDLRSMATDKPEPMKVLSHK---------RAVHSAYFSP-SGSSLATTSF  434 (536)
Q Consensus       374 ~~~p~~~~~l~s~s~dg---------~i~iwdl~~~~~~~~~~~~~~~~~---------~~v~~l~~sp-~g~~l~t~s~  434 (536)
                      .+..++ ++++.|+.+|         .+..||..+..    .......+.         ..-.++.|.. ++++++.|+.
T Consensus       345 ~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~----w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~  419 (656)
T 1k3i_A          345 LYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSG----DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGS  419 (656)
T ss_dssp             GGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTC----EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCB
T ss_pred             eeecCC-ceEEEECCCCcEEEecCccceeeeecCCcc----eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCC
Confidence            111222 4445554443         46788887642    111111111         1224455544 6778888875


Q ss_pred             CC-----------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----------CcEEEEcCCc
Q 009380          435 DD-----------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----------RTVEVISPAQ  492 (536)
Q Consensus       435 dg-----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----------g~I~v~d~~~  492 (536)
                      ++           .|.+||..+..-........+..+...  .++..++++++++|+.+           ..+.+||..+
T Consensus       420 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~--~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          420 PDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH--TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             SSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC--EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             CCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccC--CeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence            43           577888765543222101112222111  23456799999999854           4689999877


Q ss_pred             ccc--ceeccCCceeeeeeeEeecCCCCCEEEEEcc
Q 009380          493 RRS--VATLQSPYISAIPCRFHAHPHQVGTLAGATG  526 (536)
Q Consensus       493 ~~~--~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~  526 (536)
                      .+-  +..+...... . ......| ++.+++.|+.
T Consensus       498 ~~W~~~~~~~~~R~~-h-s~a~ll~-dg~v~v~GG~  530 (656)
T 1k3i_A          498 DTFYKQNPNSIVRVY-H-SISLLLP-DGRVFNGGGG  530 (656)
T ss_dssp             TEEEECCCCSSCCCT-T-EEEEECT-TSCEEEEECC
T ss_pred             CceeecCCCCCcccc-c-cHhhcCC-CcEEEecCCC
Confidence            542  1111111110 1 1122334 5688888884

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.56  E-value=0.00022  Score=71.16  Aligned_cols=235  Identities=11%  Similarity=0.048  Sum_probs=142.7

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE-ECCCeEEEEECCCC----eEEEeec-C
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYDGLIRLMDAEKE----VFDLVYS-S  323 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~-s~dg~I~vwd~~~~----~~~~~~~-~  323 (536)
                      +|+.+. ...|+..++..    .. ...+......+..|+|++.. ..|+.+ ...+.|+.+++...    ....+.. .
T Consensus        85 ~ll~~~-~~~I~~i~l~~----~~-~~~~~~~~~~~~~l~~d~~~-~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDR----SE-YTSLIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             EEEEEE-TTEEEEECTTS----CS-CEEEECSCSCEEEEEEETTT-TEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred             eeEEec-cceeEEEccCC----cc-eeEeccccCcceEEeeeecc-CceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence            444444 36788888875    22 23333445678899999876 555544 45788999998762    2233333 3


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC-CCcEEEEeCCCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST-DGTACIWDLRSMAT  402 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~-dg~i~iwdl~~~~~  402 (536)
                      -.....+++.+.+.+++++-...+.|.+.++........+.........|++.|.++.++++-.. .+.|...++...  
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~--  235 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--  235 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--
Confidence            45678899987553555555567899999987554333333344568899999976555555433 378888888752  


Q ss_pred             CCCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380          403 DKPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       403 ~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                         ....+. ..-...+.|++++++..|+.+. ..+.|..+|+........+..........   .++.. .+.++++-.
T Consensus       236 ---~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~---gl~v~-~~~lywtd~  308 (400)
T 3p5b_L          236 ---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF---SLAVF-EDKVFWTDI  308 (400)
T ss_dssp             ---SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEE---EEEEE-TTEEEEEES
T ss_pred             ---ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCE---EEEEe-CCEEEEecC
Confidence               122222 2335678999998776666654 56789999986543333332211222222   23332 334555656


Q ss_pred             CCCcEEEEcCCccccceecc
Q 009380          481 MTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       481 ~dg~I~v~d~~~~~~~~~l~  500 (536)
                      ..+.|..++..+++.+..+.
T Consensus       309 ~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          309 INEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             SSCSEEEEESSSCCCCEEEE
T ss_pred             CCCeEEEEEcCCCCceEEEe
Confidence            66889999977776665554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.56  E-value=3.3e-05  Score=81.04  Aligned_cols=239  Identities=10%  Similarity=0.007  Sum_probs=146.1

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC----CEE-EEEEecC---CCCEEEEEE------CCCeEEEEECC
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG----PIS-GIVTQQY---CLSKIFTSC------YDGLIRLMDAE  313 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~----~V~-~l~~~~~---~~~~l~s~s------~dg~I~vwd~~  313 (536)
                      +..|+.++.++.|..+|..+    ++.+..+.....    .+. .-....+   +...+++++      .++.|..+|..
T Consensus       117 ~~~v~~~t~dg~l~AlD~~T----G~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~  192 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNT----GKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD  192 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSS----CCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred             CCEEEEEeCCCEEEEEECCC----CCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence            34677788899999999988    555544432210    111 1111111   211666665      37899999999


Q ss_pred             CCeEEEeecCCCc------------------------------------------eeEEEecCCCCCEEEEEEC------
Q 009380          314 KEVFDLVYSSEYA------------------------------------------VFSLSQQPNNVNTLYFGEG------  345 (536)
Q Consensus       314 ~~~~~~~~~~~~~------------------------------------------i~~l~~~~~~~~~l~~g~~------  345 (536)
                      +++..........                                          -..+++.|.. .++++++.      
T Consensus       193 tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~  271 (582)
T 1flg_A          193 TGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWN  271 (582)
T ss_dssp             TCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSC
T ss_pred             CCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCccc
Confidence            9876654432110                                          0124555655 67887773      


Q ss_pred             --------------C----CeEEEEECCCCccceeEec--cC--------CCeEEEEEe-cCCC--CEEEEEeCCCcEEE
Q 009380          346 --------------Q----GGLNIWDVRSRKSATEWLL--HE--------ARINTIDFN-PRNP--NIMATSSTDGTACI  394 (536)
Q Consensus       346 --------------d----g~i~i~d~~~~~~~~~~~~--h~--------~~i~~i~~~-p~~~--~~l~s~s~dg~i~i  394 (536)
                                    |    +.|..+|..+++.+..++.  |.        .++. +... .++.  .+++.++.+|.+++
T Consensus       272 ~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~  350 (582)
T 1flg_A          272 TWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYV  350 (582)
T ss_dssp             GGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEE
T ss_pred             CcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEE
Confidence                          2    5899999999999877753  32        1121 1221 3342  37888999999999


Q ss_pred             EeCCCCCCCCCCcceeeccc---------------------------------------------CceeEEEEccCCCeE
Q 009380          395 WDLRSMATDKPEPMKVLSHK---------------------------------------------RAVHSAYFSPSGSSL  429 (536)
Q Consensus       395 wdl~~~~~~~~~~~~~~~~~---------------------------------------------~~v~~l~~sp~g~~l  429 (536)
                      +|..+++..    .......                                             ..-..++++|+..++
T Consensus       351 lD~~tG~~l----w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~  426 (582)
T 1flg_A          351 VDRSNGKLQ----NAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF  426 (582)
T ss_dssp             EETTTCCEE----EEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred             EECCCCCEe----cccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence            999887521    1000000                                             001245677765555


Q ss_pred             EEEe---------------------------------CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE
Q 009380          430 ATTS---------------------------------FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV  476 (536)
Q Consensus       430 ~t~s---------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  476 (536)
                      ++..                                 .+|.|..||+.+++.+...........  ..    ....+.++
T Consensus       427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~--g~----~~tagglv  500 (582)
T 1flg_A          427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA--GV----LATAGNLV  500 (582)
T ss_dssp             EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCS--CC----EEETTTEE
T ss_pred             EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcc--cc----eEeCCCEE
Confidence            5432                                 257899999999988777654322110  11    11246688


Q ss_pred             EEEcCCCcEEEEcCCccccceeccCC
Q 009380          477 FIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       477 ~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      ++|+.|+.++.||..+++.+.++...
T Consensus       501 f~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          501 FTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEECCCCcEEEEECCCCCEEEEecCC
Confidence            88999999999999999999888754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.55  E-value=1.1e-05  Score=73.56  Aligned_cols=193  Identities=8%  Similarity=0.022  Sum_probs=123.9

Q ss_pred             eEEeccCCC--CEEEEEEecCCCCEEEEEECC--CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEE
Q 009380          275 IYLFRTHLG--PISGIVTQQYCLSKIFTSCYD--GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLN  350 (536)
Q Consensus       275 ~~~~~~h~~--~V~~l~~~~~~~~~l~s~s~d--g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~  350 (536)
                      +..+ +|..  -...+.|++ + .++.+.+.+  +.|+++|+.+++...................+..+......++.+.
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEc-CCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            3444 5653  467899986 3 566666665  4899999999988776655544443333333423444444678999


Q ss_pred             EEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--ccc---CceeEEEEccC
Q 009380          351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHK---RAVHSAYFSPS  425 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~---~~v~~l~~sp~  425 (536)
                      +||..+.+.+.++...... ..++  +++..++++ ..++.|.++|..+.+    ....+.  .+.   ..++.+.|. +
T Consensus        89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS-dgs~~l~~iDp~t~~----~~~~I~V~~~g~~~~~lNeLe~~-~  159 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS-DGTAVIRKLDPDTLQ----QVGSIKVTAGGRPLDNLNELEWV-N  159 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE-CSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE-CCCCeEEEEeCCCCe----EEEEEEEccCCcccccceeeEEe-C
Confidence            9999999999888743322 3444  456455554 458899999998864    221211  222   244566665 6


Q ss_pred             CCeEEEEeCCCcEEEEeCCCCCcceEEeccC----------CCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNN----------QTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       426 g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                      |..++..-.++.|.+.|..+++.+..+....          ......  .-++|+|+++.|++.+.
T Consensus       160 G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vl--NGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          160 GELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVL--NGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCE--EEEEEETTTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCce--EEEEEcCCCCEEEEECC
Confidence            7655555568899999999999888886331          112222  23779998777666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.54  E-value=1.7e-05  Score=72.94  Aligned_cols=178  Identities=12%  Similarity=0.062  Sum_probs=120.4

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV  316 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~  316 (536)
                      ...+.|+   ++.++.+.+.+|.|+++|+.+    ++.+..+ - ..........+++..+....-.++.+.+||..+.+
T Consensus        57 tqGL~~~---~~~Ly~stG~~g~v~~iD~~T----gkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~  127 (268)
T 3nok_A           57 TQGLVFH---QGHFFESTGHQGTLRQLSLES----AQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQ  127 (268)
T ss_dssp             EEEEEEE---TTEEEEEETTTTEEEECCSSC----SSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTE
T ss_pred             cceEEEE---CCEEEEEcCCCCEEEEEECCC----CcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCc
Confidence            4577776   457778888889999999998    4555544 2 22333322333442455555568999999999988


Q ss_pred             EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC-----CCeEEEEEecCCCCEEEEEeCCCc
Q 009380          317 FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE-----ARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       317 ~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~-----~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      ....+.....-+.+++  ++ ..|+.+..++.|.++|..+.+.+..+....     ..++.+.|. +| .+++..-.+..
T Consensus       128 ~~~ti~~~~eGwGLt~--Dg-~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~  202 (268)
T 3nok_A          128 RERTTRYSGEGWGLCY--WN-GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIWHSSD  202 (268)
T ss_dssp             EEEEEECSSCCCCEEE--ET-TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTCSE
T ss_pred             EEEEEeCCCceeEEec--CC-CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEECCCCe
Confidence            7776665544456664  45 567777778899999999998887776322     245778887 45 56666656789


Q ss_pred             EEEEeCCCCCCCCCCcceeec--------------ccCceeEEEEccCCCeEEEEe
Q 009380          392 ACIWDLRSMATDKPEPMKVLS--------------HKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~--------------~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      |.+.|..+++     +.....              ...-.+.|+|+|+++.|++.+
T Consensus       203 I~vIDp~TG~-----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 VLEIDPATGT-----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEECTTTCB-----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCCCCc-----EEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999874     222221              123568999999776666655

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.54  E-value=0.0001  Score=73.24  Aligned_cols=234  Identities=8%  Similarity=-0.037  Sum_probs=142.1

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-CCcee
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYAVF  328 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-~~~i~  328 (536)
                      +|+.+. ...|+.+++..    ... ..+......+..++|.+.+..++++-...+.|..+++.......+... .....
T Consensus        89 ~l~~~~-~~~I~~i~~~~----~~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~  162 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHR----SEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG  162 (386)
T ss_dssp             EEEEEC-BSCEEEECTTS----CCC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC
T ss_pred             eeEeec-CccceeeccCC----CcE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc
Confidence            444443 35788888874    222 233333456889999987624444555678999999987765444332 24567


Q ss_pred             EEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCc
Q 009380          329 SLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATDKPEP  407 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~  407 (536)
                      .+++.+.+.+++++-...+.|.++++........+.........|++.|.+..++++-... +.|..+++...     ..
T Consensus       163 glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-----~~  237 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-----GR  237 (386)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----SC
T ss_pred             EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-----Cc
Confidence            7888876645555555677899988864433323333345678999999776666665555 78888887652     11


Q ss_pred             ceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          408 MKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       408 ~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      ..+. ..-...+.|+|+|++..|+.+ ...+.|..+|+.... ...+.... .... .  .+++ ..+.++++-...+.|
T Consensus       238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~-~~~P-~--giav-~~~~ly~td~~~~~V  311 (386)
T 3v65_B          238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQG-LPHP-F--AITV-FEDSLYWTDWHTKSI  311 (386)
T ss_dssp             EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS-CEEEECSS-CSSE-E--EEEE-ETTEEEEEETTTTEE
T ss_pred             EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe-eEEEEECC-CCCc-e--EEEE-ECCEEEEeeCCCCeE
Confidence            2222 233457899999866555554 456789999986433 33332211 1111 2  2333 244455666667889


Q ss_pred             EEEcCCccccceecc
Q 009380          486 EVISPAQRRSVATLQ  500 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~  500 (536)
                      ..++..+++.+..+.
T Consensus       312 ~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          312 NSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEETTTCCSCEEEE
T ss_pred             EEEECCCCcceEEEc
Confidence            999866666655554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=3.8e-05  Score=77.45  Aligned_cols=247  Identities=9%  Similarity=0.058  Sum_probs=135.9

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-C----eEEEE
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-G----LIRLM  310 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-g----~I~vw  310 (536)
                      ....|+++|..++. |.++...+.|+.+|+..     ..+..+.........|+|++++ ++|+.+... +    .+.++
T Consensus       138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~-----~~v~~~~~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~  210 (430)
T 3tc9_A          138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEK-----EYVSTVYSGLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYIL  210 (430)
T ss_dssp             CCCEEEEETTEEEE-EEEEEBTEEEEEEETTT-----TEEEEEECCCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEE
T ss_pred             CCCEEEECCCCCCe-EEEEeCCCcEEEEECCC-----CEEEEEecCCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEE
Confidence            45788999610344 44444447889999874     3344444455668899999998 766666542 2    34444


Q ss_pred             ECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-cCCCeEEEEEecCCCCEEEEEeC
Q 009380          311 DAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-HEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       311 d~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      +...... ............++++|++..++++-..++.|..+|...+........ .......|+|+|++..++++-..
T Consensus       211 ~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          211 TRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             EGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             eCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            4332211 012222345678889994436666655778999999886654222221 22456889999988435666667


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecc---------------cCcee-EEEEc--------cCCCeEEEEeCCCcEEEEeCC
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSH---------------KRAVH-SAYFS--------PSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~---------------~~~v~-~l~~s--------p~g~~l~t~s~dg~I~iwd~~  444 (536)
                      .+.|..++..........+..+.+.               -.... .++..        ++|.++++-...+.|+.++. 
T Consensus       291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-  369 (430)
T 3tc9_A          291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-  369 (430)
T ss_dssp             TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-
T ss_pred             CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-
Confidence            7889998865321000001111110               01122 45553        34666666566778999984 


Q ss_pred             CCCcceEEecc--CCCC----------ceeeeeEEEEcCC-CCEEEEEcCCCcEEEEcC
Q 009380          445 NFENTSMIHHN--NQTG----------RWISSFRAIWGWD-DSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       445 ~~~~~~~~~~~--~~~~----------~~~~~~~~~~s~~-g~~l~~gs~dg~I~v~d~  490 (536)
                      ++.........  ...+          .......++++++ +.++++-..++.|+.+++
T Consensus       370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            44333222220  0001          1112333667774 545555555567777664

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.52  E-value=4.4e-05  Score=80.03  Aligned_cols=271  Identities=11%  Similarity=0.101  Sum_probs=154.4

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCC---------EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP---------ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV  320 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~  320 (536)
                      .|++++.++.|.-+|..+    ++.+-.+......         ...+.+  .+ ..++.++.|+.|..+|..+++....
T Consensus        70 ~vyv~~~~~~v~AlD~~t----G~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~-~~v~~~t~dg~l~AlD~~TG~~~W~  142 (582)
T 1flg_A           70 VIYVTASYSRLFALDAKT----GKRLWTYNHRLPDDIRPCCDVVNRGAAI--YG-DKVFFGTLDASVVALNKNTGKVVWK  142 (582)
T ss_dssp             EEEEEETTTEEEEEESSS----CCEEEEEECCCCTTCCCSSCSCCCCCEE--ET-TEEEEEETTTEEEEEESSSCCEEEE
T ss_pred             EEEEEcCCCCEEEEECCC----CcEEEEEcCCCCcccccccccCCCccEE--EC-CEEEEEeCCCEEEEEECCCCCEEee
Confidence            344444434488888876    4555444432211         011222  23 6888899999999999999987655


Q ss_pred             ecCCC-----ceeE--EEecC--CCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCCe---------------
Q 009380          321 YSSEY-----AVFS--LSQQP--NNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEARI---------------  370 (536)
Q Consensus       321 ~~~~~-----~i~~--l~~~~--~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~i---------------  370 (536)
                      +....     .+.+  +....  ++...+++++.      +|.|..+|..+++.+.........+               
T Consensus       143 ~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g  222 (582)
T 1flg_A          143 KKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK  222 (582)
T ss_dssp             EECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred             ecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence            43221     1111  11111  12116777653      7899999999998876543211000               


Q ss_pred             --------------------------EEEEEecCCCCEEEEEeC--------------------C----CcEEEEeCCCC
Q 009380          371 --------------------------NTIDFNPRNPNIMATSST--------------------D----GTACIWDLRSM  400 (536)
Q Consensus       371 --------------------------~~i~~~p~~~~~l~s~s~--------------------d----g~i~iwdl~~~  400 (536)
                                                ..+++.|.. .+++.+..                    |    +.|..+|..++
T Consensus       223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG  301 (582)
T 1flg_A          223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG  301 (582)
T ss_dssp             CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred             cccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence                                      124555655 45555542                    2    57999999987


Q ss_pred             CCCCCCcceee--cccC-------ceeEEEEc-cCCC---eEEEEeCCCcEEEEeCCCCCcceEEeccCC----------
Q 009380          401 ATDKPEPMKVL--SHKR-------AVHSAYFS-PSGS---SLATTSFDDTIGIWSGVNFENTSMIHHNNQ----------  457 (536)
Q Consensus       401 ~~~~~~~~~~~--~~~~-------~v~~l~~s-p~g~---~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~----------  457 (536)
                      +    ..-...  .|..       ...-+... .+|+   .++.++.+|.++++|..+++.+..+.....          
T Consensus       302 ~----~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~  377 (582)
T 1flg_A          302 E----VKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK  377 (582)
T ss_dssp             C----EEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT
T ss_pred             C----EEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc
Confidence            5    222221  2211       11112222 4674   788899999999999999988766543210          


Q ss_pred             CCceee-------------------ee-----------EEEEcCCCCEEEEEc---------------------------
Q 009380          458 TGRWIS-------------------SF-----------RAIWGWDDSCVFIGN---------------------------  480 (536)
Q Consensus       458 ~~~~~~-------------------~~-----------~~~~s~~g~~l~~gs---------------------------  480 (536)
                      .++.+.                   ..           .++++|+...+++..                           
T Consensus       378 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  457 (582)
T 1flg_A          378 TGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRI  457 (582)
T ss_dssp             TCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             CCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceee
Confidence            011000                   00           134566555555432                           


Q ss_pred             ------CCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          481 ------MTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       481 ------~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                            .+|.|..||+.+++.+.+...... .....+..   .+.+++.|+.||.|+.||.+
T Consensus       458 ~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t---agglvf~g~~dg~l~A~D~~  515 (582)
T 1flg_A          458 KRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT---AGNLVFTGTGDGYFKAFDAK  515 (582)
T ss_dssp             EESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             cCCCCCCcceEEEEECCCCCEEEEecCCCC-CcccceEe---CCCEEEEECCCCcEEEEECC
Confidence                  257899999999998877654221 11111222   25788889999999999863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.49  E-value=5.1e-05  Score=76.52  Aligned_cols=244  Identities=13%  Similarity=0.093  Sum_probs=145.4

Q ss_pred             CEEEEEEecC-CCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC-----eEEEEECCCC
Q 009380          284 PISGIVTQQY-CLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSR  357 (536)
Q Consensus       284 ~V~~l~~~~~-~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~  357 (536)
                      ....|+|.|+ ....|+.+...+.|+.+|+.++....+.........+++.+++ + |+++...+     .+..++...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG-~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG-D-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC-C-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC-C-EEEEcCCCCcccceEEEEECCCC
Confidence            3568999985 2256666665589999999888887776666678999999998 5 55555422     2344443222


Q ss_pred             ccc-eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCeEEEE-e
Q 009380          358 KSA-TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSSLATT-S  433 (536)
Q Consensus       358 ~~~-~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~t~-s  433 (536)
                      ... ..+. .......++++|++++++++-..++.|+.+|..++.    ....+.  +....-..++|+|+|++|+.+ .
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~----~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~  292 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT----LTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN  292 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC----EEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe----EEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence            111 1222 234556788999444666666667889999987542    101111  122233469999999855554 4


Q ss_pred             CCCcEEEEeCCC--CCc--ceEEecc-CCCC---------ceeeeeEEEE---------cCCCCEEEEEcCCCcEEEEcC
Q 009380          434 FDDTIGIWSGVN--FEN--TSMIHHN-NQTG---------RWISSFRAIW---------GWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       434 ~dg~I~iwd~~~--~~~--~~~~~~~-~~~~---------~~~~~~~~~~---------s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      ..+.|..++...  +..  ...+... ...+         .......+++         ..+|.++++-..++.|+.++.
T Consensus       293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            567899987652  221  1222111 1100         0111223566         667777777777788999985


Q ss_pred             CccccceeccCCc--------e--------eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          491 AQRRSVATLQSPY--------I--------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       491 ~~~~~~~~l~~~~--------~--------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                       ++. +.++.+..        .        -..+..+++.|.++.++++=...+.|+.+++|
T Consensus       373 -~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          373 -EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             -TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence             342 33332210        0        12255678885566777777778889888764

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.49  E-value=0.00024  Score=68.37  Aligned_cols=212  Identities=8%  Similarity=0.005  Sum_probs=130.7

Q ss_pred             CCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      -..+..++|++  .+ .++++-...+.|..+++............+.........+++.+.+..++++-...+.|.++++
T Consensus        29 ~~~p~g~~~d~--~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           29 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (316)
T ss_dssp             CSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEe--CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence            35678999998  54 4555555668999999874100001112222222345789998765244555566889999999


Q ss_pred             CCCeEEEeec-CCCceeEEEecCCCCCEEEEEEC-C-CeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC
Q 009380          313 EKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG-Q-GGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       313 ~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~-d-g~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      .......+.. .-.....+++.|.+ ..|+.... . +.|..+++. +.....+. ..-...+.|++.|++..++++-+.
T Consensus       107 ~g~~~~~~~~~~~~~P~~iavdp~~-g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEEECCCCCcceEEeCCCC-CEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECC
Confidence            8765444433 33567899999876 45555544 3 689888875 33333332 234567899999977666666666


Q ss_pred             CCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          389 DGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      .+.|..+|+....   ...+... ........+++. .+.++++-...+.|..+|..+++....+.
T Consensus       185 ~~~I~~~d~dg~~---~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          185 LHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             TTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CCeEEEEecCCCc---eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            7899999987421   1111111 122345677775 45555565667889999987777666553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.48  E-value=3.6e-05  Score=77.60  Aligned_cols=244  Identities=14%  Similarity=0.091  Sum_probs=144.5

Q ss_pred             CEEEEEEec-CCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC-C----eEEEEECCCC
Q 009380          284 PISGIVTQQ-YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ-G----GLNIWDVRSR  357 (536)
Q Consensus       284 ~V~~l~~~~-~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d-g----~i~i~d~~~~  357 (536)
                      ....|+++| ++ ..|+.+...+.|+.+|+.++....+.........++|++++ +.|+++... +    .+..++. .+
T Consensus       138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G-~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEA-DSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTS-SEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCC-CEEEEEeCCCCcccceEEEEeC-CC
Confidence            457899998 45 56777766689999999988777666666778999999998 666666542 1    3444443 33


Q ss_pred             ccc--eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE-eC
Q 009380          358 KSA--TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT-SF  434 (536)
Q Consensus       358 ~~~--~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~-s~  434 (536)
                      ...  ..+. .......++++|+++.++++-..++.|..||.....   ...+...........++|+|+|++|+.+ ..
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---EEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---EEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            322  2332 234467789999554677776677899999987532   0011111222457789999999955544 56


Q ss_pred             CCcEEEEeCCCC--C--cceEEecc-CCCC---------ceeeee-EEEE--------cCCCCEEEEEcCCCcEEEEcCC
Q 009380          435 DDTIGIWSGVNF--E--NTSMIHHN-NQTG---------RWISSF-RAIW--------GWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       435 dg~I~iwd~~~~--~--~~~~~~~~-~~~~---------~~~~~~-~~~~--------s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .+.|..++....  .  ....+... ...+         ...... -+..        .++|.++++-..++.|+.++. 
T Consensus       291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-  369 (430)
T 3tc9_A          291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-  369 (430)
T ss_dssp             TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-
T ss_pred             CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-
Confidence            778999876532  1  12222111 0000         000011 1222        234555666566678888884 


Q ss_pred             ccccceeccCC---------ce-------eeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          492 QRRSVATLQSP---------YI-------SAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       492 ~~~~~~~l~~~---------~~-------~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .+.. .++.+.         ..       -..+..+++.|.++.++++-.....|+.+++|
T Consensus       370 ~G~v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          370 QGRV-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TSEE-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCcE-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            3432 222211         00       11356788888555677777777889888764

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.46  E-value=0.00034  Score=66.88  Aligned_cols=224  Identities=11%  Similarity=-0.014  Sum_probs=130.7

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC--CeEEEEECCCCccc
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--GGLNIWDVRSRKSA  360 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--g~i~i~d~~~~~~~  360 (536)
                      .....++|++++ .++++-..++.|..||..... .........+..+++.+++ +++++....  ..|..+|..+++..
T Consensus        32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~~-~~~~~~~~~p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCC-CEEEEeCCCCeEEEECCCCce-EEEEeCCCCceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEE
Confidence            457889999987 766666678999999987653 3344445678999999998 555544332  24777887777653


Q ss_pred             eeEec-cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc---------eeecccCceeEEEEccCCCeEE
Q 009380          361 TEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM---------KVLSHKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       361 ~~~~~-h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~---------~~~~~~~~v~~l~~sp~g~~l~  430 (536)
                      ..... .......++..+.+ ..+++-..++.|.++|...+..   .+.         .....-...+.+  +|++.+|+
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~---~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcE---eEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            22221 22234555555533 4555554688999999764210   000         000111234455  78887665


Q ss_pred             EE-eCCCcEEEEeCCC-CCc--ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc--ceeccCCce
Q 009380          431 TT-SFDDTIGIWSGVN-FEN--TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS--VATLQSPYI  504 (536)
Q Consensus       431 t~-s~dg~I~iwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~--~~~l~~~~~  504 (536)
                      .+ ...+.|..|++.. +..  ...+....      ..-.++++++|+++++....+.|.+|+.. ++.  +..+...- 
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~~~------~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~-  254 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQT------NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV-  254 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEESC------CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC-
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEeccC------CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc-
Confidence            55 4577899999864 221  12221110      01115678899877776677899999976 444  22333221 


Q ss_pred             eeeeeeEeec---CCCCCEEEEEc
Q 009380          505 SAIPCRFHAH---PHQVGTLAGAT  525 (536)
Q Consensus       505 ~~~~~~~~~~---p~~~~~lasgs  525 (536)
                       ..+..+++.   | ++..|..++
T Consensus       255 -~~p~~~a~~g~~~-d~~~LyVt~  276 (306)
T 2p4o_A          255 -IGSTAVAFGQTEG-DCTAIYVVT  276 (306)
T ss_dssp             -TTEEEEEECCSTT-TTTEEEEEE
T ss_pred             -CCceEEEEecccC-CCCEEEEEC
Confidence             223456776   5 445555544

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.45  E-value=0.00056  Score=68.13  Aligned_cols=232  Identities=8%  Similarity=-0.027  Sum_probs=139.8

Q ss_pred             eEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCC
Q 009380          216 CVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCL  295 (536)
Q Consensus       216 ~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~  295 (536)
                      .|+..++..............+..|+|++. ++.++++-...+.|..+++............+.........|++.+.+.
T Consensus        93 ~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~-~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~  171 (400)
T 3p5b_L           93 EVRKMTLDRSEYTSLIPNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS  171 (400)
T ss_dssp             EEEEECTTSCSCEEEECSCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred             eeEEEccCCcceeEeccccCcceEEeeeec-cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence            444445433222222223467899999983 3445555556688888888642100112233333445678999998652


Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEE
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINT  372 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~  372 (536)
                      +++++-...+.|.+.+++......+.. .-.....|++.|.+ ..|+....  .+.|...++........+...-...+.
T Consensus       172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~-g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~g  250 (400)
T 3p5b_L          172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  250 (400)
T ss_dssp             EEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-TEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEE
T ss_pred             ceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-CeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEE
Confidence            555555667899999998765554443 33568899999976 45665553  368999988643332222333357789


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM  451 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~  451 (536)
                      |++.+++..++++-...+.|..+|+....   ...+... ..-.....+++. .+.++++-...+.|..+|..+++....
T Consensus       251 lavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~  326 (400)
T 3p5b_L          251 ITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL  326 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCC---CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEE
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEeCCCCc---cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEE
Confidence            99998776555655567889999987532   1111111 122344566663 344555666678899999777777766


Q ss_pred             Ee
Q 009380          452 IH  453 (536)
Q Consensus       452 ~~  453 (536)
                      +.
T Consensus       327 i~  328 (400)
T 3p5b_L          327 LA  328 (400)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.41  E-value=7.1e-05  Score=75.49  Aligned_cols=246  Identities=11%  Similarity=0.040  Sum_probs=137.0

Q ss_pred             ceEEEEEEec-CCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC-----eEEE
Q 009380          236 RITQMKFLPC-SDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG-----LIRL  309 (536)
Q Consensus       236 ~I~~v~~~p~-~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg-----~I~v  309 (536)
                      ....|+|+|. .++.++++ ...+.|+.++..+     ..+..+.........|+|++++ + |+.+...+     .+..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~-----g~v~~~~~~~~~P~giavd~dG-~-lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVN-----QYVDIKTTNIGQCADVNFTLNG-D-MVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTT-----TEEEEECCCCSCEEEEEECTTC-C-EEEEECCSCTTSEEEEE
T ss_pred             CCceEEEccccCCCEEEEE-eCCCCEEEEECCC-----CEEEEeecCCCCccEEEECCCC-C-EEEEcCCCCcccceEEE
Confidence            4568999982 12555444 4338899999864     2344444445668999999999 6 55444322     2333


Q ss_pred             EECCCCeE-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEE
Q 009380          310 MDAEKEVF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       310 wd~~~~~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      .+...+.. ......-.....++++|.+.+++++-..++.|+.+|..++.....+.  +....-..|+|+|++..++++-
T Consensus       212 ~~~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          212 FTRASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             ECGGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             EECCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            33322211 01122234567788999443555555567899999998776533332  1122335799999884356666


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecc---------------cCceeEEEE---------ccCCCeEEEEeCCCcEEEEe
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSH---------------KRAVHSAYF---------SPSGSSLATTSFDDTIGIWS  442 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~---------------~~~v~~l~~---------sp~g~~l~t~s~dg~I~iwd  442 (536)
                      ...+.|..+|+.........+..+.+.               -.....+++         .++|.++++-...+.|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            667889998865321100011111111               123567999         77787777767778899998


Q ss_pred             CCCCCcceEEeccC--C----CC------ceeeeeEEEEc-CCCCEEEEEcCCCcEEEEcC
Q 009380          443 GVNFENTSMIHHNN--Q----TG------RWISSFRAIWG-WDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       443 ~~~~~~~~~~~~~~--~----~~------~~~~~~~~~~s-~~g~~l~~gs~dg~I~v~d~  490 (536)
                      . ++..........  .    .+      .......++++ ++|.++++-..++.|+.+++
T Consensus       372 ~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          372 P-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             T-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             C-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            5 443222221111  0    00      11112335566 45555555555566766654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.38  E-value=0.00033  Score=64.63  Aligned_cols=207  Identities=7%  Similarity=-0.017  Sum_probs=125.4

Q ss_pred             EeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380          277 LFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV  354 (536)
Q Consensus       277 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~  354 (536)
                      .+.+-...+..++|+|++..++++...++.|...|+. +......  ......-.|++.+++ .++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEc
Confidence            4445567899999999873455557778999999998 5554443  333578888998776 45555556778999988


Q ss_pred             CCCcc---ceeEe------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCce
Q 009380          355 RSRKS---ATEWL------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAV  417 (536)
Q Consensus       355 ~~~~~---~~~~~------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v  417 (536)
                      .....   +....      ........|+|.|.+..+++ +.......||.+....  ....+...        .+...+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~--~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLL--SSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTT--CSSCCEEEECHHHHHTCCSSCC
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccc--cCCceeeecchhhccccccCCc
Confidence            75442   22221      12344689999998744444 4444444555543210  00111111        133467


Q ss_pred             eEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC----CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          418 HSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT----GRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       418 ~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      .+++++| .+++++.+.....|.++|.. ++.+..+......    ......=-++|.++|+++ +.+.-+.+++|.-
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~  251 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP  251 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred             eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence            8999999 55666666777889999965 4454444322110    011112236789999744 4466666777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.35  E-value=0.00016  Score=73.23  Aligned_cols=257  Identities=10%  Similarity=0.035  Sum_probs=144.0

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC----CCCEEEEEE-------ecCCCCEEEEEECC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH----LGPISGIVT-------QQYCLSKIFTSCYD  304 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~-------~~~~~~~l~s~s~d  304 (536)
                      ....|+|+|...+.++++-...+.|++.|+..     ..+..+..-    ......|+|       ++++ ..|+.+...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-----~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-----RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTT-----TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCC-----CEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCC
Confidence            46789999721355666655556788888875     333333221    234789999       9998 766666655


Q ss_pred             C-------eEEEEECCC-CeEE-----EeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECC-------CCcc-----
Q 009380          305 G-------LIRLMDAEK-EVFD-----LVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR-------SRKS-----  359 (536)
Q Consensus       305 g-------~I~vwd~~~-~~~~-----~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~-------~~~~-----  359 (536)
                      +       .|.+++... +.+.     .....-.....++++|++..++++-..++.|..+|+.       ++..     
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence            4       266666443 2221     1111123456788999765666666778899999997       5543     


Q ss_pred             ------ceeE-e-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc---c------------Cc
Q 009380          360 ------ATEW-L-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH---K------------RA  416 (536)
Q Consensus       360 ------~~~~-~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~---~------------~~  416 (536)
                            ...+ . ........|+|+|++..++++-+....|+.+|..........+..+.+.   .            ..
T Consensus       294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~  373 (496)
T 3kya_A          294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN  373 (496)
T ss_dssp             GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred             cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence                  1122 2 2234568999999884345555567788886654311000000111111   0            12


Q ss_pred             ee-EEEEc-------cCCCeEEEEeCCCcEEEEeCCCCCcceEE-eccC------------CCC------ceeeeeEEEE
Q 009380          417 VH-SAYFS-------PSGSSLATTSFDDTIGIWSGVNFENTSMI-HHNN------------QTG------RWISSFRAIW  469 (536)
Q Consensus       417 v~-~l~~s-------p~g~~l~t~s~dg~I~iwd~~~~~~~~~~-~~~~------------~~~------~~~~~~~~~~  469 (536)
                      .. .+...       ++|.++++-...+.|+.++. ++. +.++ ....            ..+      ..-....+++
T Consensus       374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav  451 (496)
T 3kya_A          374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY  451 (496)
T ss_dssp             EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred             CeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence            33 45554       45676666667888999984 453 3333 2210            011      1112234667


Q ss_pred             cCC-CCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          470 GWD-DSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       470 s~~-g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                      +++ |.++++=..+..|+.+++.....++...
T Consensus       452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~~~~  483 (496)
T 3kya_A          452 DDVKEMFYVHDQVGHTIRTISMEQEENVAGDE  483 (496)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECCCC------
T ss_pred             ECCCCEEEEEeCCCCEEEEEECCCCcccccCC
Confidence            776 6666666677888888887765554443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.34  E-value=0.00039  Score=64.17  Aligned_cols=197  Identities=11%  Similarity=0.082  Sum_probs=127.7

Q ss_pred             cccCCceEEEEEEecCCc-cEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEE
Q 009380          231 RIMPGRITQMKFLPCSDV-RMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIR  308 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~-~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~  308 (536)
                      .+..+.+..++|+|  ++ .++++...++.|...|+.     +..+..+. .-......|++.+++ .++++.-.++.+.
T Consensus        23 ~g~~~~lSGla~~~--~~~~L~aV~d~~~~I~~ld~~-----g~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~   94 (255)
T 3qqz_A           23 AGITNNISSLTWSA--QSNTLFSTINKPAAIVEMTTN-----GDLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIY   94 (255)
T ss_dssp             TTCCSCEEEEEEET--TTTEEEEEEETTEEEEEEETT-----CCEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEE
T ss_pred             CCcccCcceeEEeC--CCCEEEEEECCCCeEEEEeCC-----CCEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEE
Confidence            34456799999999  55 455567778888888886     34444442 112457889998877 6666655678899


Q ss_pred             EEECCCCeE---EEee-------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECC---CCccceeEe-------ccCC
Q 009380          309 LMDAEKEVF---DLVY-------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVR---SRKSATEWL-------LHEA  368 (536)
Q Consensus       309 vwd~~~~~~---~~~~-------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~---~~~~~~~~~-------~h~~  368 (536)
                      ++++.....   ....       ........|+|.|.+ +.|+++.......+|.+.   ....+..+.       .+..
T Consensus        95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~  173 (255)
T 3qqz_A           95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLD  173 (255)
T ss_dssp             EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred             EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccC
Confidence            998764321   1111       234456899999998 566666655444555443   111122221       1334


Q ss_pred             CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc----------cCceeEEEEccCCCeEEEEeCCCcE
Q 009380          369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH----------KRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~----------~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                      .+.+++++|...++++....++.|.++|...      .+.....-          -.....|+|.++|+ |+..+.-+.+
T Consensus       174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g------~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~  246 (255)
T 3qqz_A          174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVG------EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRF  246 (255)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEECTTC------CEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEE
T ss_pred             CceeEEEcCCCCeEEEEECCCCeEEEEcCCC------CEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceE
Confidence            6789999998877888888889999999764      22222211          12668999999998 4455777777


Q ss_pred             EEEeC
Q 009380          439 GIWSG  443 (536)
Q Consensus       439 ~iwd~  443 (536)
                      +.|.-
T Consensus       247 y~f~~  251 (255)
T 3qqz_A          247 YRFTP  251 (255)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.33  E-value=9.7e-05  Score=80.18  Aligned_cols=199  Identities=9%  Similarity=0.020  Sum_probs=116.6

Q ss_pred             ceeeeecC-CCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEEeCC-----
Q 009380          185 GFKTCKDE-GLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAGSKL-----  257 (536)
Q Consensus       185 ~v~~~~~s-~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d-----  257 (536)
                      .+....+| |||+.++...+..     +.....|.++++... .. +..........++|+|  |++.|+....+     
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~-----G~~~~~l~v~dl~~g~~~-l~~~~~~~~~~~~Wsp--Dg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMS-----GNEVYTIEFKRISDPSQT-IADKVSGTNGEIVWGP--DHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESS-----SSSCEEEEEEETTCTTCC-CCCCEEEECSCCEECS--STTEEEEEEECTTCCE
T ss_pred             EEeeeEecCCCCCEEEEEEeCC-----CCceEEEEEEECCCCCEe-CCccccCceeeEEEec--CCCEEEEEEECCCCCC
Confidence            56788999 9999999763221     112235888887654 31 1111122345789999  98877777665     


Q ss_pred             CcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEEC---CCeEEEEECCCC--eE--EEeec-CCCcee
Q 009380          258 GNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCY---DGLIRLMDAEKE--VF--DLVYS-SEYAVF  328 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~---dg~I~vwd~~~~--~~--~~~~~-~~~~i~  328 (536)
                      ..|.++++.+...  .....+. .+......+.|+|++ ++|+..+.   ...|.++|+.++  ..  ..+.. ......
T Consensus       247 ~~v~~~~lgt~~~--~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~  323 (751)
T 2xe4_A          247 NKVWRHVMGKLQS--EDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRY  323 (751)
T ss_dssp             EEEEEEETTSCGG--GCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCE
T ss_pred             CEEEEEECCCCch--hcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceE
Confidence            2578888876321  1122322 233456788999999 77665552   346888899875  33  33433 334556


Q ss_pred             EEEecCCCCCEEEEEECC----CeEEEEECCCCcccee-EeccCC--CeEEEEEecCCCCEEEEEeCCCc--EEEEeC
Q 009380          329 SLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATE-WLLHEA--RINTIDFNPRNPNIMATSSTDGT--ACIWDL  397 (536)
Q Consensus       329 ~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~-~~~h~~--~i~~i~~~p~~~~~l~s~s~dg~--i~iwdl  397 (536)
                      ++.|+..+ .+++....+    ..|..+|+.++..... +..+..  .+..+.+.  +..++++...++.  |.++|+
T Consensus       324 s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          324 DVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEETTT-EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            66655433 344444333    3677788765322233 333444  34555554  5467777777775  455565

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.32  E-value=0.00071  Score=73.18  Aligned_cols=236  Identities=10%  Similarity=0.033  Sum_probs=138.8

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC----eEEEeec-CC
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE----VFDLVYS-SE  324 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~----~~~~~~~-~~  324 (536)
                      +|+... ...|+..++..    .. ...+......+..|+|.+....++++-...+.|+.+++...    ....+.. .-
T Consensus       397 ~Ll~an-~~~Ir~i~l~~----~~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDR----SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEEC-BSSEEEECTTS----CC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             cccccc-ccceeEeeccC----Cc-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence            444433 35688878774    22 23333345668899999876244445555688999998753    2233333 34


Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCC
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATD  403 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~  403 (536)
                      .....|++.+.+.+++++-...+.|.+.++........+.........|++.|.++.++++-... +.|...++...   
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---  547 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---  547 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---
Confidence            56778899887745555556678999999875443233333445688999999765555554333 67888888652   


Q ss_pred             CCCcceee-cccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                        ....+. ..-...+.|++++.+..|+.+. ..+.|..+++........+.........+   .++.. .+.++++-..
T Consensus       548 --~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~---glav~-~~~lYwtD~~  621 (791)
T 3m0c_C          548 --DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPF---SLAVF-EDKVFWTDII  621 (791)
T ss_dssp             --CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEE---EEEEE-TTEEEEEETT
T ss_pred             --ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCC---EEEEe-CCEEEEEECC
Confidence              222222 2335788999998666565554 55679999986544333332211222222   23332 2334444455


Q ss_pred             CCcEEEEcCCccccceecc
Q 009380          482 TRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       482 dg~I~v~d~~~~~~~~~l~  500 (536)
                      .+.|...+..+++.+..+.
T Consensus       622 ~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          622 NEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TTEEEEEETTTCCCCEEEE
T ss_pred             CCEEEEEeCCCCcceEEee
Confidence            6788888877776555543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.31  E-value=0.001  Score=63.89  Aligned_cols=207  Identities=8%  Similarity=-0.005  Sum_probs=132.4

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ..+..++|++. ++.++++-...+.|..+++....   .....+...-.....+++.+.+..++++-...+.|.++++..
T Consensus        35 ~~~~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~---~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  110 (318)
T 3sov_A           35 EDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTE---SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEEEGG-GTEEEEEETTTTEEEEEETTSSS---CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CccEEEEEEeC-CCEEEEEECCCCcEEEEEccCCC---ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence            35678999983 34555666667889999987531   111222222344668899876635555556678999999987


Q ss_pred             CeEEEee-cCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      .....+. ..-.....+++.|.+ ..|+....  .+.|..+++.. .....+. ..-...+.|+++|++..++++=+..+
T Consensus       111 ~~~~~l~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~  188 (318)
T 3sov_A          111 SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN  188 (318)
T ss_dssp             CSCEEEECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CcEEEEEeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence            5444443 334567899999876 46666553  57899988763 3333332 22345689999997766666666678


Q ss_pred             cEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          391 TACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      .|..+|+....     ...+. ........+++. .+.++++-...+.|..++..+++....+.
T Consensus       189 ~I~~~d~dG~~-----~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          189 FIHKSNLDGTN-----RQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEEEETTSCS-----CEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEEEEcCCCCc-----eEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            89999987421     11121 233455677775 34455555567889999988777766654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.30  E-value=1.1e-05  Score=86.23  Aligned_cols=251  Identities=11%  Similarity=-0.010  Sum_probs=136.6

Q ss_pred             eEEecccccCcccccc----ccCCceEEEEEEecCCccEEEEEeC-CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380          216 CVDIGSLTLKPENIAR----IMPGRITQMKFLPCSDVRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT  290 (536)
Q Consensus       216 ~v~lw~~~~~~~~~~~----~~~~~I~~v~~~p~~~~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  290 (536)
                      .+.+||.....-....    .+.....++++.+  ++.++++|+. ++.+.+||..+..  ...+..+.. ...-.+++.
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~GG~~~~~v~~yd~~t~~--W~~~~~~~~-~R~~~s~~~  294 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQV-ARGYQSSAT  294 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSS-CCSSCEEEE
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCCccccccCCC--CCCEEEeCCCCCCceEEecCcCCc--eeECCCCCc-cccccceEE
Confidence            5677876443221111    1223344567777  8999999984 4589999987632  111111111 112234556


Q ss_pred             ecCCCCEEEEEE-CC-----CeEEEEECCCCeEEEeecC-----CCceeEEEecCCCCCEEEEEECCC---------eEE
Q 009380          291 QQYCLSKIFTSC-YD-----GLIRLMDAEKEVFDLVYSS-----EYAVFSLSQQPNNVNTLYFGEGQG---------GLN  350 (536)
Q Consensus       291 ~~~~~~~l~s~s-~d-----g~I~vwd~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~dg---------~i~  350 (536)
                      .+++ .+++.|+ .+     ..+.+||..+.....+...     ...-....+..++ .+++.|+.+|         .+.
T Consensus       295 ~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~  372 (656)
T 1k3i_A          295 MSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMN  372 (656)
T ss_dssp             CTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEE
T ss_pred             ecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCcccee
Confidence            6677 8888888 44     5799999998877654211     0000011222333 4555665443         567


Q ss_pred             EEECCCCccceeEeccC---------CCeEEEEEecCCCCEEEEEeCCC-----------cEEEEeCCCCCCCCCCccee
Q 009380          351 IWDVRSRKSATEWLLHE---------ARINTIDFNPRNPNIMATSSTDG-----------TACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h~---------~~i~~i~~~p~~~~~l~s~s~dg-----------~i~iwdl~~~~~~~~~~~~~  410 (536)
                      .||..+.........+.         ..-.++.|...+..+++.|+.++           .|.+||..+..     ....
T Consensus       373 ~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~-----W~~~  447 (656)
T 1k3i_A          373 WYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-----NTVF  447 (656)
T ss_dssp             EEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-----EEEE
T ss_pred             eeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC-----eeEE
Confidence            88888765433222211         12344555443447888887542           57788877642     1111


Q ss_pred             ----ecccCceeEEEEccCCCeEEEEeCC-----------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380          411 ----LSHKRAVHSAYFSPSGSSLATTSFD-----------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC  475 (536)
Q Consensus       411 ----~~~~~~v~~l~~sp~g~~l~t~s~d-----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  475 (536)
                          ......-.++...|++++++.|+.+           ..+.+||..+.+-.. +.. ....+.... .+...++|+.
T Consensus       448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~-~~~-~~~~R~~hs-~a~ll~dg~v  524 (656)
T 1k3i_A          448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNP-NSIVRVYHS-ISLLLPDGRV  524 (656)
T ss_dssp             CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCC-CSSCCCTTE-EEEECTTSCE
T ss_pred             ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee-cCC-CCCcccccc-HhhcCCCcEE
Confidence                1122223455677899999999864           468999986543211 111 111111111 1345689999


Q ss_pred             EEEEcC
Q 009380          476 VFIGNM  481 (536)
Q Consensus       476 l~~gs~  481 (536)
                      +++|+.
T Consensus       525 ~v~GG~  530 (656)
T 1k3i_A          525 FNGGGG  530 (656)
T ss_dssp             EEEECC
T ss_pred             EecCCC
Confidence            999885

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=0.0004  Score=70.38  Aligned_cols=248  Identities=10%  Similarity=0.025  Sum_probs=145.1

Q ss_pred             CEEEEEEec-CCCCEEEEE-ECCCeEEEEECCCCeEEEeecCC----CceeEEEe-------cCCCCCEEEEEECCC---
Q 009380          284 PISGIVTQQ-YCLSKIFTS-CYDGLIRLMDAEKEVFDLVYSSE----YAVFSLSQ-------QPNNVNTLYFGEGQG---  347 (536)
Q Consensus       284 ~V~~l~~~~-~~~~~l~s~-s~dg~I~vwd~~~~~~~~~~~~~----~~i~~l~~-------~~~~~~~l~~g~~dg---  347 (536)
                      ....|+|.| +. ..|+.+ ...+.|++.|+.++.+..+....    .....++|       ++++ +.|+++...+   
T Consensus       140 ~p~~la~dp~~~-~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G-~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNK-DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEA-EYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEE-EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTT-CEEEEEECCCTTG
T ss_pred             CCCEEEEccCCC-CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCC-CEEEEEeCCCCCc
Confidence            467899998 34 445444 44578999999998877665432    25889999       9998 6666666553   


Q ss_pred             ----eEEEEECCC-Cccc-----eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCC-------CCCCCCC---C-
Q 009380          348 ----GLNIWDVRS-RKSA-----TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLR-------SMATDKP---E-  406 (536)
Q Consensus       348 ----~i~i~d~~~-~~~~-----~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~-------~~~~~~~---~-  406 (536)
                          .|.+++... +...     ..+.. -.....++++|++..++++-..++.|..+|+.       ++....+   . 
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                367776443 2322     22322 23446788999776778788788899999987       4321000   0 


Q ss_pred             -----cceeecccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCC--CCc--ceEEecc-CCCCc--------ee-eee-
Q 009380          407 -----PMKVLSHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVN--FEN--TSMIHHN-NQTGR--------WI-SSF-  465 (536)
Q Consensus       407 -----~~~~~~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~--~~~--~~~~~~~-~~~~~--------~~-~~~-  465 (536)
                           .+...........|+|+|+|++|+.+ +..+.|+.++...  ...  ...+... ...+.        .+ ... 
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence                 01111233456799999999965544 4567788866532  211  1222111 11110        00 111 


Q ss_pred             EEEEc-------CCCCEEEEEcCCCcEEEEcCCccccceeccCCc--------------ee--------eeeeeEeecCC
Q 009380          466 RAIWG-------WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPY--------------IS--------AIPCRFHAHPH  516 (536)
Q Consensus       466 ~~~~s-------~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~--------------~~--------~~~~~~~~~p~  516 (536)
                      -+...       .++.++++-..++.|+.++. ++ .+.++.+..              ..        ..+..+++.+.
T Consensus       377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            12222       45666677677789999984 44 344443210              11        12456777774


Q ss_pred             CCCEEEEEccCCeEEEEecC
Q 009380          517 QVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       517 ~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++.++++=+...+|+.++++
T Consensus       455 ~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEECC
Confidence            35666666777888888764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.24  E-value=0.004  Score=65.64  Aligned_cols=204  Identities=7%  Similarity=-0.007  Sum_probs=123.8

Q ss_pred             CCceEEEEEEecCCccEEE-EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVV-AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~-tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      -.....|+|++  .+..|. +-...+.|..++++..   ......+..-......|++.+.+.+++++-...+.|.+.++
T Consensus        39 ~~~~~~ld~~~--~~~~ly~sD~~~~~I~r~~~~g~---~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~  113 (619)
T 3s94_A           39 LEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKT---ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL  113 (619)
T ss_dssp             CSCEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEe--CCCEEEEEECCCCeEEEEEccCC---CceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence            34578999998  555554 4445678888888742   11122333333568899999876345555566789999999


Q ss_pred             CCCeEEEee-cCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeC
Q 009380          313 EKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       313 ~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                      .......+. ..-.....|++.|.+ ..|+....  .+.|...++.. .....+. ..-...+.|++.+++..++++-..
T Consensus       114 dG~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~  191 (619)
T 3s94_A          114 DGSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAK  191 (619)
T ss_dssp             TSCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETT
T ss_pred             CCCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCC
Confidence            876544444 344567899999976 45666553  46777777753 3333332 334567899999977666666666


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT  449 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~  449 (536)
                      .+.|..+|+.....  .....  +.......+++..+ ..+++-...+.|...|..+++..
T Consensus       192 ~~~I~~~~~dG~~~--~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~  247 (619)
T 3s94_A          192 LNFIHKSNLDGTNR--QAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL  247 (619)
T ss_dssp             TCCEEEESSSCCEE--C-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred             CCeEEEecCCCCcc--EEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence            78899999875321  11111  11222346677655 44444446678888887666543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.23  E-value=0.0015  Score=70.60  Aligned_cols=211  Identities=9%  Similarity=0.012  Sum_probs=129.4

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...+..|+|++. ++.++++-...+.|+.+++............+.........|++.+.+.+++++-...+.|.+.++.
T Consensus       423 ~~~~~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETT-TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeeccc-CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            456789999983 3445556566678988888742110122333333445567899998773455555667899999998


Q ss_pred             CCeEEEeec-CCCceeEEEecCCCCCEEEEEEC-C-CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          314 KEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEG-Q-GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       314 ~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~-d-g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      ......+.. .-.....|++.|.+ ..|+.... . +.|.+.++........+.......+.|++.+.+..++++=...+
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~  580 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  580 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC
Confidence            766554443 33568899999986 46666553 2 68999998644332233333467889999987755555555567


Q ss_pred             cEEEEeCCCCCCCCCCcceee-c--ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          391 TACIWDLRSMATDKPEPMKVL-S--HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~-~--~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      .|..+|+....     ...+. .  .-.....|++. .+.++++-...+.|...|..+++.+..+
T Consensus       581 ~I~~~d~dG~~-----~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          581 SISSIDVNGGN-----RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EEEEEETTSCS-----CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             cEEEEecCCCc-----eEEEecCCCccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            89999986532     11222 1  12234456663 2344444446677888887777665555

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.21  E-value=0.001  Score=63.90  Aligned_cols=236  Identities=7%  Similarity=-0.020  Sum_probs=138.3

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE--EEeecCCCce
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF--DLVYSSEYAV  327 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~--~~~~~~~~~i  327 (536)
                      +|+.+. ...|+..++.....  .....+. ....+..++|.+....++++-...+.|..+++..+..  ......-...
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKE--NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTS--CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             EEEEEc-cCeEEEEECCCCce--EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            444443 35799999986320  1112222 2234678999987624445555678899999887632  1222223456


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCCCCCC
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMATDKPE  406 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~~~~~  406 (536)
                      ..+++.+.+.+++++-...+.|.++++........+.........|++.|.++.++.+-. ..+.|..+++...     .
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-----~  156 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-----S  156 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-----S
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-----C
Confidence            788888766355555556789999998654322222234456789999997655555442 3578888887642     1


Q ss_pred             cceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc
Q 009380          407 PMKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT  484 (536)
Q Consensus       407 ~~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~  484 (536)
                      ...+. ..-...+.++++|++..|+.+ +..+.|..+|+.. .....+.. ......   ..++.. .+.++++-...+.
T Consensus       157 ~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~-~~~~~P---~glav~-~~~lywtd~~~~~  230 (318)
T 3sov_A          157 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVK-GSLPHP---FALTLF-EDILYWTDWSTHS  230 (318)
T ss_dssp             CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEC-SCCSCE---EEEEEE-TTEEEEEETTTTE
T ss_pred             eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEec-CCCCCc---eEEEEe-CCEEEEEecCCCe
Confidence            11221 223456899999966655555 4567899999864 33333322 111222   123333 3345555556688


Q ss_pred             EEEEcCCccccceecc
Q 009380          485 VEVISPAQRRSVATLQ  500 (536)
Q Consensus       485 I~v~d~~~~~~~~~l~  500 (536)
                      |..++..+++.+..+.
T Consensus       231 V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          231 ILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEEETTTCCSCEEEE
T ss_pred             EEEEECCCCCceEEEe
Confidence            9999887776554443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.21  E-value=0.00021  Score=77.48  Aligned_cols=192  Identities=13%  Similarity=0.088  Sum_probs=112.4

Q ss_pred             ceEEEEEE-ecCCccEEEEEeC-CC----cEEEEECCCC-CCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----
Q 009380          236 RITQMKFL-PCSDVRMVVAGSK-LG----NITFWNLDSQ-QDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----  304 (536)
Q Consensus       236 ~I~~v~~~-p~~~~~~l~tg~~-dg----~v~iwd~~~~-~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----  304 (536)
                      .+...+|| |  ||++||.+.. +|    +|+++|+.++ ......   +..   ....+.|+|++ +.|+....|    
T Consensus       175 ~~~~~~~S~P--DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---~~~---~~~~~~WspDg-~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPP--EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---VSG---TNGEIVWGPDH-TSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTT--TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---EEE---ECSCCEECSST-TEEEEEEECTTCC
T ss_pred             EEeeeEecCC--CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---ccC---ceeeEEEecCC-CEEEEEEECCCCC
Confidence            68889999 9  9998886543 23    4999999874 210011   111   13467899998 777666665    


Q ss_pred             -CeEEEEECCCCeE--EEeec--CCCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCCc-cc--eeEe-ccCCCeEE
Q 009380          305 -GLIRLMDAEKEVF--DLVYS--SEYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSRK-SA--TEWL-LHEARINT  372 (536)
Q Consensus       305 -g~I~vwd~~~~~~--~~~~~--~~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~~-~~--~~~~-~h~~~i~~  372 (536)
                       ..|.++++.++..  ..++.  .......+.|+|++ .+|+...   ....|.++|+.++. ..  ..+. .......+
T Consensus       246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s  324 (751)
T 2xe4_A          246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT-NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD  324 (751)
T ss_dssp             EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS-SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred             CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC-CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence             3688889877532  23332  23446788999999 5665544   23468889998763 12  3332 33455566


Q ss_pred             EEEecCCCCEEEEEeCC----CcEEEEeCCCCCCCCCCcce-eecccC--ceeEEEEccCCCeEEEEeCCCc--EEEEeC
Q 009380          373 IDFNPRNPNIMATSSTD----GTACIWDLRSMATDKPEPMK-VLSHKR--AVHSAYFSPSGSSLATTSFDDT--IGIWSG  443 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~d----g~i~iwdl~~~~~~~~~~~~-~~~~~~--~v~~l~~sp~g~~l~t~s~dg~--I~iwd~  443 (536)
                      +.|+. +..+++....+    ..|..+|+.+..    .... +..+..  .+..+.+. .+.++++...++.  |.++|+
T Consensus       325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~----~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPS----DWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEET-TTEEEEEECTTTCTTCEEEEEETTSTT----CCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcc----cceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            66654 54555555544    356677765421    1122 333433  34455554 2344555566775  556665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.19  E-value=0.0055  Score=59.05  Aligned_cols=274  Identities=11%  Similarity=0.024  Sum_probs=140.0

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      ...+.+|.|.+  ++..+++| ..|.| +...+.+. ....+.. .......+.+|.|.+ + . ++.++.++.|.. ..
T Consensus        35 ~~~~~~v~~~~--~~~~~~~G-~~g~i-~~s~DgG~-tW~~~~~~~~~~~~~~~~i~~~~-~-~-~~~~g~~g~i~~-S~  105 (327)
T 2xbg_A           35 TATILDMSFID--RHHGWLVG-VNATL-METRDGGQ-TWEPRTLVLDHSDYRFNSVSFQG-N-E-GWIVGEPPIMLH-TT  105 (327)
T ss_dssp             SSCEEEEEESS--SSCEEEEE-TTTEE-EEESSTTS-SCEECCCCCSCCCCEEEEEEEET-T-E-EEEEEETTEEEE-ES
T ss_pred             CCcEEEEEECC--CCcEEEEc-CCCeE-EEeCCCCC-CCeECCCCCCCCCccEEEEEecC-C-e-EEEEECCCeEEE-EC
Confidence            34689999976  66677755 46654 33333211 1111111 112344688999976 3 3 444566775544 33


Q ss_pred             CCCe-EEEee---cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-eccCCCeEEEEEecCCCCEEEEEe
Q 009380          313 EKEV-FDLVY---SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       313 ~~~~-~~~~~---~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      +.++ .....   .....+..+.+.+++  .+++++.+|.|..- ...++.-... ..+...+..+.+.|++ .+++.+.
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g~  181 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALGNG--SAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSG-EYVAVSS  181 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEETT--EEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTS-CEEEEET
T ss_pred             CCCCCceECccccCCCCCeEEEEEECCC--CEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCC-cEEEEEC
Confidence            3332 22222   123457778776654  44455556655332 1223332222 2445678999999966 5666554


Q ss_pred             CCCcEEE-EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeee
Q 009380          388 TDGTACI-WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSF  465 (536)
Q Consensus       388 ~dg~i~i-wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~  465 (536)
                       +|.+.. +|-. +.   ............+..+.+.+++..+ .++.+|.+++.+...++.-..+... .....  ..+
T Consensus       182 -~G~~~~S~d~g-G~---tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~--~~~  253 (327)
T 2xbg_A          182 -RGSFYSTWEPG-QT---AWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSV--GFL  253 (327)
T ss_dssp             -TSSEEEEECTT-CS---SCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCS--CEE
T ss_pred             -CCcEEEEeCCC-CC---ceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCc--ceE
Confidence             555544 3321 11   0111112345678899999988755 5566788877642212211111111 01111  123


Q ss_pred             EEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC---ceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          466 RAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP---YISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       466 ~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~---~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      .+.+.+++..++++. ++.| ++....++.-..+...   ....  ..+.+.+  ...++.++.+|.|.-++
T Consensus       254 ~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~--~~v~~~~--~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          254 DLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNF--YKILFFS--PDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCC--CEEEEEE--TTEEEEECSTTEEEEEC
T ss_pred             EEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCe--EEEEEEC--CCceEEEcCCceEEEEc
Confidence            356777777766665 6666 4455555433333311   1112  2344443  25677778889887665

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.15  E-value=0.00087  Score=64.26  Aligned_cols=198  Identities=9%  Similarity=0.135  Sum_probs=126.1

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC---CC---EEEEEE-C--CCeEEEEEC--CCC
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC---LS---KIFTSC-Y--DGLIRLMDA--EKE  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~---~~---~l~s~s-~--dg~I~vwd~--~~~  315 (536)
                      ...++++..+.+-+.+||+.     ++.+..+..  +.++.+..-|.-   ..   ++++.. .  +++|++|++  .++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~-----G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLD-----GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETT-----SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             CccEEEEEcCCCCEEEEcCC-----CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            44567777788899999995     677777654  567888777631   01   233333 3  589999977  444


Q ss_pred             eEEEeec------CC-CceeEEEe--cCCCCC-EEEEEECCCeEEEEECC-------CCccceeEeccCCCeEEEEEecC
Q 009380          316 VFDLVYS------SE-YAVFSLSQ--QPNNVN-TLYFGEGQGGLNIWDVR-------SRKSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       316 ~~~~~~~------~~-~~i~~l~~--~~~~~~-~l~~g~~dg~i~i~d~~-------~~~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      .+..+-.      .. ..+..+|+  ++.... ++++...+|.+..|++.       +.+.++++.. ...+..+...+.
T Consensus       112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~  190 (355)
T 3amr_A          112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDE  190 (355)
T ss_dssp             CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETT
T ss_pred             ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCC
Confidence            4443311      22 56777888  665433 68888899999999983       2345667663 457888888886


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec---ccCceeEEEEc--cCCC-eEEEEe-CCCcEEEEeCC-CCCcce
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS---HKRAVHSAYFS--PSGS-SLATTS-FDDTIGIWSGV-NFENTS  450 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~---~~~~v~~l~~s--p~g~-~l~t~s-~dg~I~iwd~~-~~~~~~  450 (536)
                      . ..|+.+-++.-|..+|.+-........+...+   ....+..|++-  ++++ +|++++ .+++..+||.. +.+.+.
T Consensus       191 ~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          191 Y-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             T-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             C-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence            6 57888888866666664422111112333322   22467888874  5555 666666 67799999986 555555


Q ss_pred             EEe
Q 009380          451 MIH  453 (536)
Q Consensus       451 ~~~  453 (536)
                      .+.
T Consensus       270 ~f~  272 (355)
T 3amr_A          270 DFR  272 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.00  E-value=3.9e-05  Score=82.33  Aligned_cols=228  Identities=13%  Similarity=0.051  Sum_probs=128.2

Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE-ECCCeEEEEECCC----CeEEEeec-CCCceeEE
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYDGLIRLMDAEK----EVFDLVYS-SEYAVFSL  330 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~-s~dg~I~vwd~~~----~~~~~~~~-~~~~i~~l  330 (536)
                      .+.|++.++..    .. ...+......+..|+|.+.+ ..|+.+ ...+.|+.+++.+    .....+.. .-.....|
T Consensus       385 ~~~I~~id~~~----~~-~~~~~~~~~~p~gla~d~~~-~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl  458 (699)
T 1n7d_A          385 RHEVRKMTLDR----SE-YTSLIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  458 (699)
T ss_dssp             TTC-CEECTTS----CC-EECCSCCCTTCCCCEEETTT-TEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred             ccceEEEeCCC----Cc-ceeeeccCcceEEEcccccc-CeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence            35677777764    22 22222223456789999876 555555 4568899999875    22222221 12345678


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCcce
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~~~  409 (536)
                      ++.+.+.+++++-...+.|.++++........+.........|++.|.++.++++-... +.|.++++....     ...
T Consensus       459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-----~~~  533 (699)
T 1n7d_A          459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYS  533 (699)
T ss_dssp             ECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-----CCE
T ss_pred             EEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-----eeE
Confidence            88765535555545678899999875433222222234567889998765555554333 678887775421     111


Q ss_pred             ee-cccCceeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCcceEEecc-CCCCceeeeeEEEEcCCCCEEEEEcCCCcEE
Q 009380          410 VL-SHKRAVHSAYFSPSGSSLA-TTSFDDTIGIWSGVNFENTSMIHHN-NQTGRWISSFRAIWGWDDSCVFIGNMTRTVE  486 (536)
Q Consensus       410 ~~-~~~~~v~~l~~sp~g~~l~-t~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~  486 (536)
                      +. ..-...+.|+|+|++..|+ +-...+.|.++++... ....+... ......   +.+++..+ .++++....+.|.
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P---~glavd~~-~lywtd~~~~~V~  608 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHP---FSLAVFED-KVFWTDIINEAIF  608 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSC---CCCEEETT-EEEEECSTTTCEE
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCc---eEeEEECC-EEEEEeCCCCeEE
Confidence            11 2234567899999755454 4456678999998643 33333211 111111   11223333 3444555568899


Q ss_pred             EEcCCccccceecc
Q 009380          487 VISPAQRRSVATLQ  500 (536)
Q Consensus       487 v~d~~~~~~~~~l~  500 (536)
                      .++..+++.+..+.
T Consensus       609 ~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          609 SANRLTGSDVNLLA  622 (699)
T ss_dssp             EEETTTEEEEECCC
T ss_pred             EEEccCCCceEEee
Confidence            99988777666554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.97  E-value=5.1e-05  Score=81.43  Aligned_cols=212  Identities=8%  Similarity=-0.017  Sum_probs=123.2

Q ss_pred             CceEEEEEEecCCccEEEEE-eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          235 GRITQMKFLPCSDVRMVVAG-SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ..+..|+|++  .+..|+.. ...+.|..+++............+.........|++.+.+..++++-...+.|.++++.
T Consensus       406 ~~p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          406 RNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             TTCCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             cceEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            4577899998  55555544 45678999998741100011111111112345678876553555555567889999998


Q ss_pred             CCeEEEeecC-CCceeEEEecCCCCCEEEEEECC-CeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          314 KEVFDLVYSS-EYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       314 ~~~~~~~~~~-~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      ......+... ......|++.|.+..++++-... +.|.++++.... ...+. ......+.|+|.|++..++++-+..+
T Consensus       484 g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~  562 (699)
T 1n7d_A          484 GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  562 (699)
T ss_dssp             SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred             CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCC
Confidence            7655544432 34567889998764444433222 678888775332 22222 22345678999998767777777778


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      .|..+|+....  ...+............|++..+ .++++....+.|..+|..+++.+..+
T Consensus       563 ~I~~~d~dG~~--~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          563 SISSIDVNGGN--RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEEEECSSSSC--CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             eEEEEccCCCc--eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            99999986521  0011111111223345566543 44555556678999998777655554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.96  E-value=0.019  Score=60.46  Aligned_cols=232  Identities=9%  Similarity=-0.007  Sum_probs=140.3

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCC-Cce
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSE-YAV  327 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-~~i  327 (536)
                      +|+.+ ..+.|+..++...    .....+. ..-..+..|+|++.....+++-..++.|..+++.......+.... ...
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~----~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P   82 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETN----NNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYP   82 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCT----TCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred             EEEEE-eCCcEEEEECCCC----CcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCc
Confidence            45544 4568999999852    2222221 223467899999987344445556789999999876544444332 457


Q ss_pred             eEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCCCC
Q 009380          328 FSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATS-STDGTACIWDLRSMATDKP  405 (536)
Q Consensus       328 ~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~-s~dg~i~iwdl~~~~~~~~  405 (536)
                      ..+++.+.+.+++++-...+.|.+.++.... ...+. ........|++.|.++.++.+- +..+.|...++...     
T Consensus        83 ~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-----  156 (628)
T 4a0p_A           83 EGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-----  156 (628)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-----
T ss_pred             ceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-----
Confidence            7888887764555555567899999986543 33332 3445678999999665555543 22567888887653     


Q ss_pred             CcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCc
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT  484 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~  484 (536)
                      ....+...-...+.|++++++..|+.+. ..+.|..+|+..... ..+...  .....   .++... +..+++-...+.
T Consensus       157 ~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~---glav~~-~~ly~tD~~~~~  229 (628)
T 4a0p_A          157 ERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPF---GLTQYQ-DYIYWTDWSRRS  229 (628)
T ss_dssp             SCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEE---EEEEET-TEEEEEETTTTE
T ss_pred             ceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCce---EEEEEC-CEEEEecCCCCE
Confidence            2222233455778999999766565554 567899999865443 333221  11222   233332 334444445678


Q ss_pred             EEEEcCCccccceec
Q 009380          485 VEVISPAQRRSVATL  499 (536)
Q Consensus       485 I~v~d~~~~~~~~~l  499 (536)
                      |...|..+++....+
T Consensus       230 I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          230 IERANKTSGQNRTII  244 (628)
T ss_dssp             EEEEETTTCCSCEEE
T ss_pred             EEEEECCCCCceEEE
Confidence            888887666544333

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.95  E-value=0.0033  Score=59.72  Aligned_cols=205  Identities=8%  Similarity=-0.004  Sum_probs=126.3

Q ss_pred             eccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECCCCeEEEe-ecC-------CCceeEEEe---cCCCCCEEEEEE-
Q 009380          278 FRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKEVFDLV-YSS-------EYAVFSLSQ---QPNNVNTLYFGE-  344 (536)
Q Consensus       278 ~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~~~~~~-~~~-------~~~i~~l~~---~~~~~~~l~~g~-  344 (536)
                      +......-.++.|++.. ..|+.++ +.++|..||...+....+ +..       ...+..|.|   .|++ .++++.. 
T Consensus         8 ~~~~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~   85 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKN   85 (334)
T ss_dssp             ECCTTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEE
T ss_pred             ecCcccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcc
Confidence            33344445678999876 5666665 799999999986644333 221       114689999   5775 5666543 


Q ss_pred             ------------CCCeEEEEECC---CCccceeEecc-------------CCCeEEEEEecCCCCEEEEEeCC-CcEEEE
Q 009380          345 ------------GQGGLNIWDVR---SRKSATEWLLH-------------EARINTIDFNPRNPNIMATSSTD-GTACIW  395 (536)
Q Consensus       345 ------------~dg~i~i~d~~---~~~~~~~~~~h-------------~~~i~~i~~~p~~~~~l~s~s~d-g~i~iw  395 (536)
                                  .+..|..||+.   +++.+......             ....+.|+..++| +..++++.- +.|..+
T Consensus        86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV  164 (334)
T 2p9w_A           86 AKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARV  164 (334)
T ss_dssp             TTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEE
T ss_pred             cccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEE
Confidence                        15789999999   88876655421             1247899999988 677777777 777666


Q ss_pred             eCCCCCCCCCCcceee------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc--C--CCCceeeee
Q 009380          396 DLRSMATDKPEPMKVL------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN--N--QTGRWISSF  465 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~--~--~~~~~~~~~  465 (536)
                      +....     ....+.      ......+.|+++|+|..|++....+.|..+|+...... .+...  .  ........+
T Consensus       165 ~pdG~-----~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgi  238 (334)
T 2p9w_A          165 SADGK-----TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEPVKINGDFGTLSGTEKI  238 (334)
T ss_dssp             CTTSC-----CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEECEESSCCCCCTTEEEE
T ss_pred             eCCCC-----EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eecccccCCcccccCcccc
Confidence            65531     111111      12234679999999998888877999999999843220 12211  1  011111111


Q ss_pred             EEEEcCCCCE-EEEEcCCCcEEEEcCCc
Q 009380          466 RAIWGWDDSC-VFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       466 ~~~~s~~g~~-l~~gs~dg~I~v~d~~~  492 (536)
                       +.-..+|+. |++.+..+.+.+.+...
T Consensus       239 -lp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          239 -VTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             -EEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             -cccccCCEEEEEEcCCCCEEEEECCCC
Confidence             112236666 55555666666666554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.94  E-value=0.0086  Score=56.88  Aligned_cols=202  Identities=10%  Similarity=0.062  Sum_probs=122.2

Q ss_pred             EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceE-Eecc----CC--CCEEEEEE---ecCCCCEEEEEE-----
Q 009380          238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY-LFRT----HL--GPISGIVT---QQYCLSKIFTSC-----  302 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~-~~~~----h~--~~V~~l~~---~~~~~~~l~s~s-----  302 (536)
                      -+++|++. ++.++++.-..|+|..|+...+    .... .+..    ..  ..+..|.|   .|++ .++++..     
T Consensus        16 E~~~wd~~-~g~~~vs~l~~g~V~~~~~~~~----~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af   89 (334)
T 2p9w_A           16 EDTIYDRT-RQVFYQSNLYKGRIEVYNPKTQ----SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF   89 (334)
T ss_dssp             SCEEEETT-TTEEEEEETTTTEEEEECTTTC----CEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred             cCccCcCC-CCEEEEEeccCCEEEEEcCCCC----eEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence            46789873 3444444447899999998742    2111 2222    11  13678999   5775 6666543     


Q ss_pred             --------CCCeEEEEECC---CCeEEEeec--------------CCCceeEEEecCCCCCEEEEEECC-CeEEEEECCC
Q 009380          303 --------YDGLIRLMDAE---KEVFDLVYS--------------SEYAVFSLSQQPNNVNTLYFGEGQ-GGLNIWDVRS  356 (536)
Q Consensus       303 --------~dg~I~vwd~~---~~~~~~~~~--------------~~~~i~~l~~~~~~~~~l~~g~~d-g~i~i~d~~~  356 (536)
                              .+..|..+|+.   +++......              ....+..++..++| +..++++.. +.|..++...
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTS
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCC
Confidence                    26789999998   665443332              11258899999998 788888888 8888887653


Q ss_pred             CccceeEec------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cc---cCceeEE-EEcc
Q 009380          357 RKSATEWLL------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SH---KRAVHSA-YFSP  424 (536)
Q Consensus       357 ~~~~~~~~~------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~---~~~v~~l-~~sp  424 (536)
                      . .+..+..      .....+.|+++|++ ++|++....|.|..+|+....   ...+...  +.   -.....+ ..-.
T Consensus       169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv---~~~v~~~~~G~~~~~~~~dgilp~~~  243 (334)
T 2p9w_A          169 K-TVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPY---AWPEPVKINGDFGTLSGTEKIVTVPV  243 (334)
T ss_dssp             C-CEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSS---CCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred             C-EEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCc---ceeecccccCCcccccCccccccccc
Confidence            3 3333321      12236799999988 566666559999999998421   1012221  21   1223333 2233


Q ss_pred             CCCe-EEEEeCCCcEEEEeCCCCCcceE
Q 009380          425 SGSS-LATTSFDDTIGIWSGVNFENTSM  451 (536)
Q Consensus       425 ~g~~-l~t~s~dg~I~iwd~~~~~~~~~  451 (536)
                      +|+. +++....+.+.+.+...++....
T Consensus       244 ~G~vllV~~~~~~~~~l~S~DgW~sa~~  271 (334)
T 2p9w_A          244 GNESVLVGARAPYAISFRSWDNWKSANI  271 (334)
T ss_dssp             TTEEEEEEEETTEEEEEECSSTTSEEEE
T ss_pred             CCEEEEEEcCCCCEEEEECCCCcceeEE
Confidence            7777 55555677777777665544433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.88  E-value=0.04  Score=58.07  Aligned_cols=205  Identities=10%  Similarity=0.020  Sum_probs=132.0

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      ..+..|+|++. ++.++++-..++.|..++++.    ......+.........|++.+.+.+++++-...+.|.+.++..
T Consensus        37 ~~~~~l~~d~~-~~~lywtD~~~~~I~r~~~~g----~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG  111 (628)
T 4a0p_A           37 KEASALDFDVT-DNRIYWTDISLKTISRAFMNG----SALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDG  111 (628)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEEECC-CCEEEEEECCCCeEEEEECCC----CCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCC
Confidence            46889999983 345555666678899998874    2222223322345678999877634555555678999999987


Q ss_pred             CeEEEee-cCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCc
Q 009380          315 EVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGT  391 (536)
Q Consensus       315 ~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~  391 (536)
                      .....+. ..-.....|++.|.. ..|+....  .+.|...++.... ...+.......+.|++.+++..+.++-...+.
T Consensus       112 ~~~~~l~~~~l~~P~~iavdp~~-G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~  189 (628)
T 4a0p_A          112 QHRQVLVWKDLDSPRALALDPAE-GFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNL  189 (628)
T ss_dssp             TTCEEEECSSCCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTE
T ss_pred             CcEEEEEeCCCCCcccEEEccCC-CeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCE
Confidence            6543333 334567899999876 46666653  5688888876443 33333345678899999977566666666788


Q ss_pred             EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEE
Q 009380          392 ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI  452 (536)
Q Consensus       392 i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~  452 (536)
                      |..+|+....    . ..+.........+++.. +.++++-...+.|...|..+++....+
T Consensus       190 I~~~d~dG~~----~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          190 IESSNMLGLN----R-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             EEEEETTSCS----C-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEcCCCCc----e-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence            9999997632    1 12223333456777764 444455445788999987666544433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.86  E-value=0.0099  Score=57.23  Aligned_cols=239  Identities=9%  Similarity=-0.013  Sum_probs=119.4

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...+.+|.|.|  + ..+++ +..|.|  |...+.......+.....+.+.+..|.+.+++ ..+ .++.+|.|.. ..+
T Consensus        79 ~~~~~~i~~~~--~-~~~~~-g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~-~~~~~g~v~~-S~D  149 (327)
T 2xbg_A           79 DYRFNSVSFQG--N-EGWIV-GEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAE-MITNVGAIYR-TKD  149 (327)
T ss_dssp             CCEEEEEEEET--T-EEEEE-EETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEE-EEETTCCEEE-ESS
T ss_pred             CccEEEEEecC--C-eEEEE-ECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCC-CEE-EEeCCccEEE-EcC
Confidence            34688999975  3 34444 445644  33332211112211111233457788887765 444 4455665432 222


Q ss_pred             CC-eEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-eccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          314 KE-VFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-LLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       314 ~~-~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      .+ ..... ......+..+.+.+++ .+++++ .+|.+..-+-..+..-..+ ......+..+.+.+++ .++ .++.+|
T Consensus       150 gG~tW~~~~~~~~~~~~~~~~~~~~-~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g-~~~-~~~~~G  225 (327)
T 2xbg_A          150 SGKNWQALVQEAIGVMRNLNRSPSG-EYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDG-RLW-MIVNGG  225 (327)
T ss_dssp             TTSSEEEEECSCCCCEEEEEECTTS-CEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTS-CEE-EEETTT
T ss_pred             CCCCCEEeecCCCcceEEEEEcCCC-cEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCC-CEE-EEeCCc
Confidence            23 23222 2344578899999876 555544 5555554432112222222 2345678899998876 444 445578


Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEc
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG  470 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s  470 (536)
                      .+++.+...+..-.........+...+.++.+.+++..++++ .++.| ++....++.-..+.........+  ..+.|.
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~--~~v~~~  301 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNF--YKILFF  301 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCC--CEEEEE
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCe--EEEEEE
Confidence            887774221210000000001123458889999887765554 46766 44444444333332111111112  225565


Q ss_pred             CCCCEEEEEcCCCcEEEEcC
Q 009380          471 WDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~  490 (536)
                      +++ .+++++.+|.|.-++-
T Consensus       302 ~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          302 SPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             ETT-EEEEECSTTEEEEECC
T ss_pred             CCC-ceEEEcCCceEEEEcC
Confidence            444 4556667887766653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.86  E-value=0.042  Score=57.80  Aligned_cols=158  Identities=10%  Similarity=-0.017  Sum_probs=97.2

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC--CCeEEEEEC
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY--DGLIRLMDA  312 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~  312 (536)
                      .....+++.+. .++++++-...+.|.+.+++.    ......+...-.....|++.|.+ ..|+.+..  .+.|...++
T Consensus        84 ~~P~GlAvD~~-~~~ly~~d~~~~~I~v~~~dG----~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~  157 (619)
T 3s94_A           84 LSPDGLACDWL-GEKLYWTDSETNRIEVSNLDG----SLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGM  157 (619)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEEETTS----CSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEET
T ss_pred             CCcCeEEEEec-CCEEEEEeCCCCEEEEEECCC----CCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEEC
Confidence            46889999983 344556666678999999885    22222232344556789999986 56665553  467777787


Q ss_pred             CCCeEEEee-cCCCceeEEEecCCCCCEEEEE-ECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCC
Q 009380          313 EKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFG-EGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG  390 (536)
Q Consensus       313 ~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g-~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg  390 (536)
                      .......+. ..-.....|++.+++ ..|+.+ ...+.|..+|+..........+......+|++..+  +++++-...+
T Consensus       158 dG~~~~~l~~~~~~~P~Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~  234 (619)
T 3s94_A          158 DGSSRFIIINSEIYWPNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTH  234 (619)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTC
T ss_pred             CCCceEEEEeCCCCCCcEEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCC
Confidence            765443333 234567899999877 455554 45678999998654322222212223346677653  4566655678


Q ss_pred             cEEEEeCCCCC
Q 009380          391 TACIWDLRSMA  401 (536)
Q Consensus       391 ~i~iwdl~~~~  401 (536)
                      .|...|..+++
T Consensus       235 ~V~~~d~~tg~  245 (619)
T 3s94_A          235 SILACNKYTGE  245 (619)
T ss_dssp             SEEEEESSSCC
T ss_pred             EEEEEECCCCc
Confidence            89888887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.81  E-value=0.029  Score=63.33  Aligned_cols=285  Identities=12%  Similarity=0.086  Sum_probs=150.4

Q ss_pred             cCCceEEEEEEecCC----ccEEEEEeC-CCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecC-CCCEEEEEECCC
Q 009380          233 MPGRITQMKFLPCSD----VRMVVAGSK-LGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQY-CLSKIFTSCYDG  305 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~----~~~l~tg~~-dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~-~~~~l~s~s~dg  305 (536)
                      ..+.|.|+++.|..+    ..+++.|.. |++|+|+++.+    ...+....- -.....++.+..- +..+|..|-.||
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~----l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG  627 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS----FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDG  627 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT----CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTS
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC----CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCC
Confidence            467899999987432    379999997 99999999985    333332221 1224445544322 226788999999


Q ss_pred             eEEEEECC--CCeEEE---eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEE-EEEecCC
Q 009380          306 LIRLMDAE--KEVFDL---VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINT-IDFNPRN  379 (536)
Q Consensus       306 ~I~vwd~~--~~~~~~---~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~-i~~~p~~  379 (536)
                      .+..+.+.  ++.+..   .+-...++.=..+...+ ..-+.+..+....+|--+ ++.... ......+.+ ..|+...
T Consensus       628 ~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~-~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~  704 (1158)
T 3ei3_A          628 ALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLS-TTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDG  704 (1158)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSS-CEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSS
T ss_pred             eEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCC-ceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCccc
Confidence            98766554  443321   12223444444444444 233333444444445432 222111 112223332 3343211


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----------------------
Q 009380          380 -PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----------------------  435 (536)
Q Consensus       380 -~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----------------------  435 (536)
                       +.-++..+ ++.++|.-+....   ........-...+..++++|..+.++.+..+                       
T Consensus       705 ~~~g~v~~~-~~~LrI~~i~~~~---~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  780 (1158)
T 3ei3_A          705 YPDSLALAN-NSTLTIGTIDEIQ---KLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS  780 (1158)
T ss_dssp             STTEEEEEC-SSCEEEEEECCSS---SEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred             CCCcEEEEc-CCceEEEEecccC---CeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence             23355444 4569999886542   2333344566788889999977655544311                       


Q ss_pred             --------------------------CcEEEEeCCCCCcceEEeccCCCCceeeee-EEEEcCC-CCEEEEEc-------
Q 009380          436 --------------------------DTIGIWSGVNFENTSMIHHNNQTGRWISSF-RAIWGWD-DSCVFIGN-------  480 (536)
Q Consensus       436 --------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~-g~~l~~gs-------  480 (536)
                                                +.|+++|..+++.+..+...  ....+.++ .+.|..+ ..+|++|+       
T Consensus       781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~--~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e  858 (1158)
T 3ei3_A          781 SSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFL--QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE  858 (1158)
T ss_dssp             EEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECC--TTEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred             hcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCC--CCcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence                                      23667776666655444322  12222222 2334433 46888886       


Q ss_pred             ---CCCcEEEEcCCccccceeccC-CceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          481 ---MTRTVEVISPAQRRSVATLQS-PYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       481 ---~dg~I~v~d~~~~~~~~~l~~-~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                         ..|.|.+|++..+ .+..+.. ...+.+.+...+   +|.+|++.+  .+|++|++.
T Consensus       859 ~~~~~Gri~vf~v~~~-kL~lv~~~~v~g~v~al~~~---~g~Lla~ig--~~l~vy~l~  912 (1158)
T 3ei3_A          859 AEPKQGRIVVFQYSDG-KLQTVAEKEVKGAVYSMVEF---NGKLLASIN--STVRLYEWT  912 (1158)
T ss_dssp             SSCCCEEEEEEEEETT-EEEEEEEEEESSCEEEEEEE---TTEEEEEET--TEEEEEEEC
T ss_pred             CCCCceEEEEEEEECC-EEEEEEEEEcCCcCEEEeee---CCEEEEEcC--CEEEEEECC
Confidence               3488999998744 2322221 112223222233   444444433  689999863

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.65  E-value=0.0054  Score=58.80  Aligned_cols=185  Identities=12%  Similarity=0.137  Sum_probs=111.0

Q ss_pred             CEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC----CCC--EEEEEeC---CCcEEEEeCCCCCCCCCCcc
Q 009380          338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR----NPN--IMATSST---DGTACIWDLRSMATDKPEPM  408 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~----~~~--~l~s~s~---dg~i~iwdl~~~~~~~~~~~  408 (536)
                      .+++.....+.|.+||+ +++.++.+..  +.++.|..-|.    +..  ++++...   +++|.+|++....    ..+
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~----~~l  113 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN----GTL  113 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT----CCE
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC----Cce
Confidence            45666677889999999 8888888753  67888888772    100  2333333   5789999774211    112


Q ss_pred             eeec-------cc-CceeEEEE--ccC-CC-eEEEEeCCCcEEEEeCC---CC----CcceEEeccCCCCceeeeeEEEE
Q 009380          409 KVLS-------HK-RAVHSAYF--SPS-GS-SLATTSFDDTIGIWSGV---NF----ENTSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       409 ~~~~-------~~-~~v~~l~~--sp~-g~-~l~t~s~dg~I~iwd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      ...+       .. ..+..+++  +|. +. ++++...+|.+..|++.   .+    +.+..+....+    .-  .|+.
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq----~E--gcvv  187 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ----TE--GMAA  187 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC----EE--EEEE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC----cc--eEEE
Confidence            1111       11 56677777  774 43 68888889999999883   22    23333433221    22  2556


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCC-----ccccceeccCCce--eeeeeeEeecCCCCC--EEEEEccCCeEEEEecC
Q 009380          470 GWDDSCVFIGNMTRTVEVISPA-----QRRSVATLQSPYI--SAIPCRFHAHPHQVG--TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~-----~~~~~~~l~~~~~--~~~~~~~~~~p~~~~--~lasgs~Dg~v~iW~~d  536 (536)
                      .+....|+++-.+..|..|+..     +++.+..+...+.  ..--+.+...+ ++.  +|+++-.+..+.|||.+
T Consensus       188 Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          188 DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred             cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence            7888899999998777777754     3445555432211  12212333333 233  45555477899999863

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.54  E-value=0.073  Score=51.67  Aligned_cols=234  Identities=15%  Similarity=0.115  Sum_probs=119.5

Q ss_pred             ceEEEEEEecCCcc-EEEEEeCCCcEEEEECCCCCCCCCceE----EeccCCCCEEEEEEecC---CCCEEEEEE-C---
Q 009380          236 RITQMKFLPCSDVR-MVVAGSKLGNITFWNLDSQQDEDNGIY----LFRTHLGPISGIVTQQY---CLSKIFTSC-Y---  303 (536)
Q Consensus       236 ~I~~v~~~p~~~~~-~l~tg~~dg~v~iwd~~~~~~~~~~~~----~~~~h~~~V~~l~~~~~---~~~~l~s~s-~---  303 (536)
                      .-..|+|.|  +|+ +++ +...|.|++++.....  ...+.    .+.........|+|+|+   + ..|+.+. .   
T Consensus        19 ~P~~i~~~p--dG~~l~V-~e~~G~i~~~~~~g~~--~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~   92 (353)
T 2g8s_A           19 HPWALAFLP--DNHGMLI-TLRGGELRHWQAGKGL--SAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGD   92 (353)
T ss_dssp             SEEEEEECS--TTCCEEE-EETTTEEEEEETTTEE--CCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECS
T ss_pred             CcEEEEEcC--CCCEEEE-EeCCceEEEEeCCCce--eeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCC
Confidence            467999999  998 554 4567999999854210  01111    11122345789999995   4 4554443 2   


Q ss_pred             ----CCeEEEEECCCC-----eEEEee---c----CCCceeEEEecCCCCCEEEEEECC--------------CeEEEEE
Q 009380          304 ----DGLIRLMDAEKE-----VFDLVY---S----SEYAVFSLSQQPNNVNTLYFGEGQ--------------GGLNIWD  353 (536)
Q Consensus       304 ----dg~I~vwd~~~~-----~~~~~~---~----~~~~i~~l~~~~~~~~~l~~g~~d--------------g~i~i~d  353 (536)
                          ...|..|++...     ....++   .    .......|.|.|++  .|+++..+              |.|.-+|
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~  170 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVRLT  170 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence                235666766532     111121   1    11224679999998  45544433              5677777


Q ss_pred             CCCCc------------cceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCC------------------
Q 009380          354 VRSRK------------SATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMAT------------------  402 (536)
Q Consensus       354 ~~~~~------------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~------------------  402 (536)
                      ....-            ....+..--.....++|+|....++++-. .++.=.|.-+..+..                  
T Consensus       171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~  250 (353)
T 2g8s_A          171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP  250 (353)
T ss_dssp             TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred             CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence            65320            12223212234678999994334444322 122223322222211                  


Q ss_pred             --------CCCCcceeecccCceeEEEEcc-------CCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380          403 --------DKPEPMKVLSHKRAVHSAYFSP-------SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       403 --------~~~~~~~~~~~~~~v~~l~~sp-------~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                              ....+.....+...+..+.|..       +|.++++.-..+.|...++...+............  .....+
T Consensus       251 ~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--~rp~~v  328 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRG--QRIRDV  328 (353)
T ss_dssp             TCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGC--CCEEEE
T ss_pred             cccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCC--CceeEE
Confidence                    0011122223445677788864       46677666677778888776543222211111111  122336


Q ss_pred             EEcCCCCEEEEE
Q 009380          468 IWGWDDSCVFIG  479 (536)
Q Consensus       468 ~~s~~g~~l~~g  479 (536)
                      ++.|||.++++.
T Consensus       329 ~~~pdG~lyv~t  340 (353)
T 2g8s_A          329 RTGPDGYLYVLT  340 (353)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCcEEEEE
Confidence            678888765543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.43  E-value=0.02  Score=55.46  Aligned_cols=198  Identities=11%  Similarity=0.105  Sum_probs=113.4

Q ss_pred             ceEEEEEEecCCccEEEEE------------eCCCcEEEEECCCCCCCCCceEEecc-----CCCCEEEEEEecC--CCC
Q 009380          236 RITQMKFLPCSDVRMVVAG------------SKLGNITFWNLDSQQDEDNGIYLFRT-----HLGPISGIVTQQY--CLS  296 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg------------~~dg~v~iwd~~~~~~~~~~~~~~~~-----h~~~V~~l~~~~~--~~~  296 (536)
                      ..-.+...|  +|..++++            ..+|.|.++|+.+.......+ .+.+     .......|.+.++  +..
T Consensus        51 G~EDi~~~~--~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           51 GSEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CCCEEEECT--TSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             CcceeEEcC--CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcE
Confidence            345566667  66554444            268999999987532111111 2222     2346778888773  423


Q ss_pred             EEEEEEC---CCeEEEEECCC--CeEEEe--ecC--CCceeEEEecCCCCCEEEEEEC------------------CCeE
Q 009380          297 KIFTSCY---DGLIRLMDAEK--EVFDLV--YSS--EYAVFSLSQQPNNVNTLYFGEG------------------QGGL  349 (536)
Q Consensus       297 ~l~s~s~---dg~I~vwd~~~--~~~~~~--~~~--~~~i~~l~~~~~~~~~l~~g~~------------------dg~i  349 (536)
                      +|+.+..   +.+|.+|++..  +....+  +.+  -...+.+.+.+++ . +++++.                  .|.|
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~-fyvt~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-H-FYATNDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-E-EEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-C-EEecCCcEeCCcccccchhhccCCccEE
Confidence            5666533   46777877654  332222  222  2457889999887 4 444432                  2556


Q ss_pred             EEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCe
Q 009380          350 NIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSS  428 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~  428 (536)
                      ..+|.  ++ +..+...-..-+.|+|+|++..++++-+..+.|..||+....  ..............-.+++++ +|++
T Consensus       206 yr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g--~l~~~~~~~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          206 TYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW--TLTPLRVLSFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             EEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSEEEEEEECTTTCCE
T ss_pred             EEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCC--cEecCEEEeCCCCCceEEEeCCCCcE
Confidence            66665  32 333333345678999999986555666667899999987421  011111223346677889998 5987


Q ss_pred             EEEEeCCC-cEEEEeC
Q 009380          429 LATTSFDD-TIGIWSG  443 (536)
Q Consensus       429 l~t~s~dg-~I~iwd~  443 (536)
                      .+++..++ .|..|+.
T Consensus       281 wva~~~~g~~v~~~~P  296 (355)
T 3sre_A          281 WVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             EEEEESCHHHHHSCCT
T ss_pred             EEEecCCceEEEEECC
Confidence            77666543 4444443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.38  E-value=0.15  Score=57.49  Aligned_cols=297  Identities=8%  Similarity=0.013  Sum_probs=142.1

Q ss_pred             cceEEecccccCcccccccc--CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCce---EEeccCCCCEEEE
Q 009380          214 GSCVDIGSLTLKPENIARIM--PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGI---YLFRTHLGPISGI  288 (536)
Q Consensus       214 dg~v~lw~~~~~~~~~~~~~--~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~---~~~~~h~~~V~~l  288 (536)
                      |+.++|+++..-........  .....++.+...+...+|..|-.||.+.-+.++...  +...   ..+.+ ..++.=.
T Consensus       581 d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~t--g~l~d~r~~~LG-~~pv~L~  657 (1158)
T 3ei3_A          581 DISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIET--GLLSDRKKVTLG-TQPTVLR  657 (1158)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTT--CCEEEEEEEECC-SSCCEEE
T ss_pred             CCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCC--CccccceeEEcC-CCceEEE
Confidence            77888888742111111111  123455555443355789999999998777765421  1111   12233 3455544


Q ss_pred             EEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCcee-EEEecCCC-CCEEEEEECCCeEEEEECCCCcc--ceeEe
Q 009380          289 VTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF-SLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKS--ATEWL  364 (536)
Q Consensus       289 ~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~-~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~--~~~~~  364 (536)
                      .|...+...++++| +....++.-+ +.+...--.-..+. ...|+... ++-++..+ ++.++|..+..-..  +.++.
T Consensus       658 ~~~~~~~~~V~a~s-~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ip  734 (1158)
T 3ei3_A          658 TFRSLSTTNVFACS-DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVP  734 (1158)
T ss_dssp             EEESSSCEEEEEES-SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEE
T ss_pred             EEeeCCceeEEEEC-CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEe
Confidence            45444423444444 4444444433 33222211112333 33343321 23455444 45699988754332  23333


Q ss_pred             ccCCCeEEEEEecCCCCEEEEEeC------C------------------------------------------CcEEEEe
Q 009380          365 LHEARINTIDFNPRNPNIMATSST------D------------------------------------------GTACIWD  396 (536)
Q Consensus       365 ~h~~~i~~i~~~p~~~~~l~s~s~------d------------------------------------------g~i~iwd  396 (536)
                       -...+..|+++|....+++..+.      +                                          +.|++.|
T Consensus       735 -L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lid  813 (1158)
T 3ei3_A          735 -LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIID  813 (1158)
T ss_dssp             -CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEE
T ss_pred             -CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEe
Confidence             34678889999866433332221      0                                          1255555


Q ss_pred             CCCCCCCCCCcceee--cccCceeEEE---EccC-CCeEEEEe----------CCCcEEEEeCCCCCcceEEeccCCCCc
Q 009380          397 LRSMATDKPEPMKVL--SHKRAVHSAY---FSPS-GSSLATTS----------FDDTIGIWSGVNFENTSMIHHNNQTGR  460 (536)
Q Consensus       397 l~~~~~~~~~~~~~~--~~~~~v~~l~---~sp~-g~~l~t~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~  460 (536)
                      ..+.+     .....  .....+.+++   |..+ ..+|++|+          ..|.|.+|++.+.+ +..+ +......
T Consensus       814 p~t~~-----~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~lv-~~~~v~g  886 (1158)
T 3ei3_A          814 QHTFE-----VLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQTV-AEKEVKG  886 (1158)
T ss_dssp             TTTCC-----EEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EEEE-EEEEESS
T ss_pred             CCCCe-----EEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EEEE-EEEEcCC
Confidence            54432     11111  2223344444   3322 46888876          34779999987432 2222 2222222


Q ss_pred             eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC-ceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP-YISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~-~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      .+..++ .|  +| +|++|- ...|++|++...+.+. .... ....+...+..   .+++++.|..-..|.++
T Consensus       887 ~v~al~-~~--~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~---~~~~I~vgD~~~Sv~~~  951 (1158)
T 3ei3_A          887 AVYSMV-EF--NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKT---KGDFILVGDLMRSVLLL  951 (1158)
T ss_dssp             CEEEEE-EE--TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEE---ETTEEEEEESSBCEEEE
T ss_pred             cCEEEe-ee--CC-EEEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEec---cCCEEEEEEhhheEEEE
Confidence            334332 23  45 444443 4689999997665433 2110 11111122322   24777777765555553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.35  E-value=0.0098  Score=56.29  Aligned_cols=229  Identities=10%  Similarity=0.041  Sum_probs=111.8

Q ss_pred             CccEEEEEe-CC-----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCC
Q 009380          247 DVRMVVAGS-KL-----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~tg~-~d-----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~  315 (536)
                      ++.+++.|+ .+     ..+.+||+.+..  ...+..+....... ++.. .++ .+++.|+.+     ..+.+||+.+.
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~-~~~~-~~~-~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQE--WSFLPSITRKRRYV-ASVS-LHD-RIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTE--EEECCCCSSCCBSC-EEEE-ETT-EEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCe--EEeCCCCChhhccc-cEEE-ECC-EEEEEcCCCCCccCceEEEEECCCC
Confidence            455666666 32     367888887532  11111111111111 2222 234 677777755     46899999887


Q ss_pred             e---EEEeecCC--CceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCccceeEeccC-CCeEEEEEecCCCCEEE
Q 009380          316 V---FDLVYSSE--YAVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSATEWLLHE-ARINTIDFNPRNPNIMA  384 (536)
Q Consensus       316 ~---~~~~~~~~--~~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~~~~h~-~~i~~i~~~p~~~~~l~  384 (536)
                      .   ...+....  ..-.+++.. ++ .+++.|+.+     ..+.+||+.+.+-...-.... ..-.+++.. ++ .+++
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv  164 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTL-GD-MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SG-VIYC  164 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TT-EEEE
T ss_pred             CCCeeEECCCCCCCccceeEEEE-CC-EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CC-EEEE
Confidence            6   55443211  111122222 33 566676643     368899988765322211111 111222222 24 6777


Q ss_pred             EEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEec
Q 009380          385 TSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       385 s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~  454 (536)
                      .|+.+     ..+.+||+.+.+-.  .+............+.+  ++.+++.|+.+     ..+.+||+.+.+-... . 
T Consensus       165 ~GG~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~-  238 (301)
T 2vpj_A          165 LGGYDGLNILNSVEKYDPHTGHWT--NVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-T-  238 (301)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-C-
T ss_pred             ECCCCCCcccceEEEEeCCCCcEE--eCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-C-
Confidence            77654     45889998774210  00000011111122222  56777777764     4689999876542221 1 


Q ss_pred             cCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380          455 NNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR  493 (536)
Q Consensus       455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~  493 (536)
                      ..+..+....  + ...++.+++.|+.+     ..|.+||..+.
T Consensus       239 ~~p~~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          239 SMTTPRCYVG--A-TVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CCSSCCBSCE--E-EEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             CCCCccccee--E-EEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            1111111111  1 12266677777765     35788888765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.34  E-value=0.12  Score=50.09  Aligned_cols=230  Identities=10%  Similarity=0.025  Sum_probs=118.2

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec---cCCCCEEEEEEecC---CCCEEEEEEC-C----
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR---THLGPISGIVTQQY---CLSKIFTSCY-D----  304 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~---~h~~~V~~l~~~~~---~~~~l~s~s~-d----  304 (536)
                      .-..++|.|  +|.++++ ...|.|.+++ .. .  ...+..+.   ........|+|+|+   + ..|+.+.. .    
T Consensus        32 ~P~~ia~~p--dG~l~V~-e~~g~I~~i~-~g-~--~~~~~~~~v~~~g~~~p~gia~~pdf~~~-g~lYv~~~~~~~~~  103 (352)
T 2ism_A           32 VPWALAFLP--DGGMLIA-ERPGRIRLFR-EG-R--LSTYAELSVYHRGESGLLGLALHPRFPQE-PYVYAYRTVAEGGL  103 (352)
T ss_dssp             CEEEEEECT--TSCEEEE-ETTTEEEEEE-TT-E--EEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEECTTSS
T ss_pred             CceEEEEcC--CCeEEEE-eCCCeEEEEE-CC-C--ccEeecceEeecCCCCceeEEECCCCCCC-CEEEEEEecCCCCC
Confidence            457899999  9986555 5569999998 31 1  11222111   12356889999998   5 45554443 2    


Q ss_pred             -CeEEEEECCCCeE---EEe---ec----CCCceeEEEecCCCCCEEEEEEC-------------CCeEEEEECCCC---
Q 009380          305 -GLIRLMDAEKEVF---DLV---YS----SEYAVFSLSQQPNNVNTLYFGEG-------------QGGLNIWDVRSR---  357 (536)
Q Consensus       305 -g~I~vwd~~~~~~---~~~---~~----~~~~i~~l~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~---  357 (536)
                       +.|..|+...+..   ..+   ..    .......++|.|++ .++++.+.             .|.|..+|....   
T Consensus       104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~  182 (352)
T 2ism_A          104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP  182 (352)
T ss_dssp             EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred             ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence             6788888775421   111   11    11234689999998 55444322             256777776430   


Q ss_pred             ---------ccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcE------EEEeCCCCCCC-------------CCCcc
Q 009380          358 ---------KSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTA------CIWDLRSMATD-------------KPEPM  408 (536)
Q Consensus       358 ---------~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i------~iwdl~~~~~~-------------~~~~~  408 (536)
                               .....+. ++ .....++|+|+...++++-.....+      .|.-+..+..-             ...+.
T Consensus       183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  261 (352)
T 2ism_A          183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL  261 (352)
T ss_dssp             TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence                     1112222 22 3356789999443555544333321      12222222200             01122


Q ss_pred             eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce----EEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380          409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS----MIHHNNQTGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       409 ~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                      ....+......++| .+|.++++.-..+.|...++.......    ........++   ...+++.|||.++++.
T Consensus       262 ~~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~r---p~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          262 YFWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGR---LREVQVGPDGALYVTT  332 (352)
T ss_dssp             EECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCC---EEEEEECTTSCEEEEE
T ss_pred             EecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCC---eeEEEECCCCcEEEEE
Confidence            22233345667777 467666665566778777765433210    0011011122   2336678888665554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.31  E-value=0.016  Score=54.75  Aligned_cols=221  Identities=10%  Similarity=0.033  Sum_probs=109.0

Q ss_pred             CEEEEEE-CC-----CeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCc---c
Q 009380          296 SKIFTSC-YD-----GLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRK---S  359 (536)
Q Consensus       296 ~~l~s~s-~d-----g~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~---~  359 (536)
                      .+++.|+ .+     ..+.+||+.+.....+.....  .-.+++.. ++ .+++.|+.+     ..+.+||+.+.+   -
T Consensus        16 ~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W   93 (301)
T 2vpj_A           16 VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HD-RIYVIGGYDGRSRLSSVECLDYTADEDGVW   93 (301)
T ss_dssp             EEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred             EEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CC-EEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence            4555555 22     468899998887655432211  11122222 33 577777754     368999998776   2


Q ss_pred             cee--EeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE
Q 009380          360 ATE--WLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       360 ~~~--~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~  432 (536)
                      ...  +...... .+++.. ++ .+++.|+.+     ..+.+||+.+.+-   ...........-.++.. -++.+++.|
T Consensus        94 ~~~~~~p~~r~~-~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~r~~~~~~~-~~~~iyv~G  166 (301)
T 2vpj_A           94 YSVAPMNVRRGL-AGATTL-GD-MIYVSGGFDGSRRHTSMERYDPNIDQW---SMLGDMQTAREGAGLVV-ASGVIYCLG  166 (301)
T ss_dssp             EEECCCSSCCBS-CEEEEE-TT-EEEEECCBCSSCBCCEEEEEETTTTEE---EEEEECSSCCBSCEEEE-ETTEEEEEC
T ss_pred             EECCCCCCCccc-eeEEEE-CC-EEEEEcccCCCcccceEEEEcCCCCeE---EECCCCCCCcccceEEE-ECCEEEEEC
Confidence            211  1111111 122222 24 677777644     3588899876421   00111111111112222 267777777


Q ss_pred             eCC-----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcccc--ceecc
Q 009380          433 SFD-----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRRS--VATLQ  500 (536)
Q Consensus       433 s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~~--~~~l~  500 (536)
                      +.+     ..+.+||+.+.+-... . ..+..+....  + ...++.+++.|+.+     ..+.+||+.+.+-  +..+.
T Consensus       167 G~~~~~~~~~~~~~d~~~~~W~~~-~-~~p~~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          167 GYDGLNILNSVEKYDPHTGHWTNV-T-PMATKRSGAG--V-ALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEEE-C-CCSSCCBSCE--E-EEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred             CCCCCcccceEEEEeCCCCcEEeC-C-CCCcccccce--E-EEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence            754     4588999876532221 1 1111111111  1 12256677777764     4689999877632  22222


Q ss_pred             CCceeeeeeeEeecCCCCCEEEEEccC-----CeEEEEec
Q 009380          501 SPYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS  535 (536)
Q Consensus       501 ~~~~~~~~~~~~~~p~~~~~lasgs~D-----g~v~iW~~  535 (536)
                      ......  ..+..   ++.+++.|+.+     ..|.+||.
T Consensus       242 ~~r~~~--~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          242 TPRCYV--GATVL---RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             SCCBSC--EEEEE---TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             Ccccce--eEEEE---CCEEEEEcCcCCCcccccEEEEcC
Confidence            111111  12222   34677777765     35677775

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.27  E-value=0.017  Score=54.65  Aligned_cols=229  Identities=10%  Similarity=0.099  Sum_probs=110.5

Q ss_pred             ccEEEEEeCC----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-----CeEEEEECCCCeEE
Q 009380          248 VRMVVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-----GLIRLMDAEKEVFD  318 (536)
Q Consensus       248 ~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~I~vwd~~~~~~~  318 (536)
                      +.+++.|+.+    ..+.+||+.+..  ...+..+...... .+++.. ++ .+++.|+.+     ..+.+||..+....
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~-~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEER--WHQVAELPSRRCR-AGMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTE--EEEECCCSSCCBS-CEEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCc--EeEcccCCccccc-ceEEEE-CC-EEEEEeCcCCCccccceEEECCCCCcee
Confidence            3456666543    357778877521  1111111111111 122222 33 666777654     35889999988766


Q ss_pred             EeecCCC--ceeEEEecCCCCCEEEEEECCC-----eEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCC-
Q 009380          319 LVYSSEY--AVFSLSQQPNNVNTLYFGEGQG-----GLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTD-  389 (536)
Q Consensus       319 ~~~~~~~--~i~~l~~~~~~~~~l~~g~~dg-----~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~d-  389 (536)
                      .+.....  .-.+++.. ++ .+++.|+.++     .+.+||+.+.+-...-. .....-.+++.. ++ .+++.|+.+ 
T Consensus        91 ~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~  166 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVL-NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GG-LLYAVGGYDV  166 (302)
T ss_dssp             EECCCSSCCBSCEEEEE-TT-EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEET
T ss_pred             eCCCCCccccceEEEEE-CC-EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CC-EEEEEeCCCC
Confidence            5543211  11122222 33 5777777553     58889988764322111 011111222333 23 577776643 


Q ss_pred             ------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEeccCCC
Q 009380          390 ------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       390 ------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                            ..+.+||+.+..-.  ..............+.+  ++.+++.|+.+     ..+.+||+.+.+-... . ..+.
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~~~~  240 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWT--YIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-A-DMNM  240 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEE--EECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-C-CCSS
T ss_pred             CCCccccEEEEEeCCCCcEE--ECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeC-C-CCCC
Confidence                  35889998764210  00000111111122222  57777777764     3688999876532221 1 1111


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCccc
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQRR  494 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~~  494 (536)
                      .+.-..  + ...++.+++.|+.++     .|.+||..+.+
T Consensus       241 ~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          241 CRRNAG--V-CAVNGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             CCBSCE--E-EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccccCe--E-EEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            111111  1 122667777777653     48889887653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.17  E-value=0.071  Score=51.76  Aligned_cols=230  Identities=11%  Similarity=-0.020  Sum_probs=118.0

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-----cccccCCceEEEEEEecCC----ccEEEE
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-----IARIMPGRITQMKFLPCSD----VRMVVA  253 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-----~~~~~~~~I~~v~~~p~~~----~~~l~t  253 (536)
                      ...-..+.|.++|+++.....           |.|.+++ ......     +...-......|+|+|  +    +.++++
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~-----------g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~   95 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERP-----------GRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAY   95 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETT-----------TEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCC-----------CeEEEEE-CCCccEeecceEeecCCCCceeEEECC--CCCCCCEEEEE
Confidence            345578899999997775422           4444444 111111     1111135688999999  7    344444


Q ss_pred             EeCC-----CcEEEEECCCCCC-CCCce-EEec---cCCCCEEEEEEecCCCCEEEEEEC-------------CCeEEEE
Q 009380          254 GSKL-----GNITFWNLDSQQD-EDNGI-YLFR---THLGPISGIVTQQYCLSKIFTSCY-------------DGLIRLM  310 (536)
Q Consensus       254 g~~d-----g~v~iwd~~~~~~-~~~~~-~~~~---~h~~~V~~l~~~~~~~~~l~s~s~-------------dg~I~vw  310 (536)
                      -...     +.|..|+...... ....+ ..+.   ........|+|.|++ .++++.+.             .|.|..+
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri  174 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRL  174 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred             EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEE
Confidence            3332     5677787763210 01111 1132   111123689999998 66665432             2566666


Q ss_pred             ECCCC-------------eE-EEeecCCCceeEEEecCCCCCEEEEEECCCe--------EEEEECCCCc----------
Q 009380          311 DAEKE-------------VF-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG--------LNIWDVRSRK----------  358 (536)
Q Consensus       311 d~~~~-------------~~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~--------i~i~d~~~~~----------  358 (536)
                      +....             .. ....++ .....++|+|+...++++-.....        |.+.  ..+.          
T Consensus       175 ~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~  251 (352)
T 2ism_A          175 TPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGR  251 (352)
T ss_dssp             CTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSC
T ss_pred             cCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCC
Confidence            66541             11 111222 346788999944355554433332        3333  2221          


Q ss_pred             --------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC--CCCcceeecccCceeEEEEccCCCe
Q 009380          359 --------SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD--KPEPMKVLSHKRAVHSAYFSPSGSS  428 (536)
Q Consensus       359 --------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~--~~~~~~~~~~~~~v~~l~~sp~g~~  428 (536)
                              ++..+ .+......++|. ++ .++++.-..+.|...++......  ......+......+..+++.|+|.+
T Consensus       252 ~~~~~~~~p~~~~-~~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~l  328 (352)
T 2ism_A          252 GNDPRYRDPLYFW-PQGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGAL  328 (352)
T ss_dssp             CCCTTSCCCSEEC-TTCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCE
T ss_pred             CCCCCCcCCeEec-CCCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcE
Confidence                    12223 223345677874 34 56666656677877777643200  0001122223357889999999976


Q ss_pred             EEEEe
Q 009380          429 LATTS  433 (536)
Q Consensus       429 l~t~s  433 (536)
                      +++..
T Consensus       329 yv~~~  333 (352)
T 2ism_A          329 YVTTS  333 (352)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.15  E-value=0.029  Score=53.12  Aligned_cols=223  Identities=9%  Similarity=-0.016  Sum_probs=109.2

Q ss_pred             CEEEEEEC--CCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEECC----CeEEEEECCCCccceeEeccC
Q 009380          296 SKIFTSCY--DGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ----GGLNIWDVRSRKSATEWLLHE  367 (536)
Q Consensus       296 ~~l~s~s~--dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d----g~i~i~d~~~~~~~~~~~~h~  367 (536)
                      .+++.|+.  ...+.+||..+.....+.....  .-.+++.. ++ .+++.|+.+    ..+.+||+.+.+-...-....
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555554  3578899999887665432211  11122222 33 567777654    578999988765322211111


Q ss_pred             C-CeEEEEEecCCCCEEEEEeCC------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC------
Q 009380          368 A-RINTIDFNPRNPNIMATSSTD------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF------  434 (536)
Q Consensus       368 ~-~i~~i~~~p~~~~~l~s~s~d------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~------  434 (536)
                      . .-.+++.. ++ .+++.|+.+      ..+.+||+.+.+-.  ..............+.  -++.+++.|+.      
T Consensus        91 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           91 PRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTRTESWH--TKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             CCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETTTTEEE--EECCCSSCCBSCEEEE--ETTEEEEECCEESCTTT
T ss_pred             cccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCCCCceE--eCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCc
Confidence            1 11122222 24 677777755      45889998874210  0000000111111222  25666666663      


Q ss_pred             ---CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCccc--cceeccCCce
Q 009380          435 ---DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRR--SVATLQSPYI  504 (536)
Q Consensus       435 ---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~--~~~~l~~~~~  504 (536)
                         -..+.+||+.+.+-... . ..+..+.-..  ++ .-++++++.|+.+     ..+.+||..+.+  .+..+.....
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~  239 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTEL-C-PMIEARKNHG--LV-FVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGV  239 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEE-C-CCSSCCBSCE--EE-EETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBS
T ss_pred             ccccceEEEeCCCCCeEEEC-C-Cccchhhcce--EE-EECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcc
Confidence               34588999876532221 1 1111111111  11 1256677777654     458899987753  2222222111


Q ss_pred             eeeeeeEeecCCCCCEEEEEccC-----CeEEEEecC
Q 009380          505 SAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTSD  536 (536)
Q Consensus       505 ~~~~~~~~~~p~~~~~lasgs~D-----g~v~iW~~d  536 (536)
                      ..  ..+..   ++.+++.|+.+     ..+.+||.+
T Consensus       240 ~~--~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          240 TV--KCAAV---GSIVYVLAGFQGVGRLGHILEYNTE  271 (306)
T ss_dssp             CC--EEEEE---TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred             ce--eEEEE---CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence            11  12222   44677777754     457777753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.14  E-value=0.024  Score=53.59  Aligned_cols=222  Identities=13%  Similarity=0.055  Sum_probs=106.9

Q ss_pred             CEEEEEECC----CeEEEEECCCCeEEEeecCCCc--eeEEEecCCCCCEEEEEECC-----CeEEEEECCCCcccee--
Q 009380          296 SKIFTSCYD----GLIRLMDAEKEVFDLVYSSEYA--VFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSATE--  362 (536)
Q Consensus       296 ~~l~s~s~d----g~I~vwd~~~~~~~~~~~~~~~--i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~~--  362 (536)
                      .+++.|+.+    ..+.+||+.+.....+.....+  -.+++.. ++ .+++.|+.+     ..+.+||..+.+-...  
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~   94 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN   94 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CC-EEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence            344555543    4578899888776554321111  1122222 33 567777654     3588999887643211  


Q ss_pred             EeccCCCeEEEEEecCCCCEEEEEeCCC-----cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC--
Q 009380          363 WLLHEARINTIDFNPRNPNIMATSSTDG-----TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD--  435 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg-----~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d--  435 (536)
                      +...... .+++.. ++ .+++.|+.++     .+.+||+.+.+-.  .. ........-.+++. -++.+++.|+.+  
T Consensus        95 ~p~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~d~~~~~W~--~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~  167 (302)
T 2xn4_A           95 MRDRRST-LGAAVL-NG-LLYAVGGFDGSTGLSSVEAYNIKSNEWF--HV-APMNTRRSSVGVGV-VGGLLYAVGGYDVA  167 (302)
T ss_dssp             CSSCCBS-CEEEEE-TT-EEEEEEEECSSCEEEEEEEEETTTTEEE--EE-CCCSSCCBSCEEEE-ETTEEEEECCEETT
T ss_pred             CCccccc-eEEEEE-CC-EEEEEcCCCCCccCceEEEEeCCCCeEe--ec-CCCCCcccCceEEE-ECCEEEEEeCCCCC
Confidence            1111111 222222 24 6777777553     4778888764210  00 00011111112222 256667776643  


Q ss_pred             -----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcccc--ceeccCCc
Q 009380          436 -----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRRS--VATLQSPY  503 (536)
Q Consensus       436 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~~--~~~l~~~~  503 (536)
                           ..+.+||+.+.+-... . ..+..+....  ++ ..++.+++.|+.+     ..+.+||..+.+-  +..+....
T Consensus       168 ~~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r  242 (302)
T 2xn4_A          168 SRQCLSTVECYNATTNEWTYI-A-EMSTRRSGAG--VG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR  242 (302)
T ss_dssp             TTEECCCEEEEETTTTEEEEE-C-CCSSCCBSCE--EE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCccccEEEEEeCCCCcEEEC-C-CCcccccccc--EE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence                 3488999876532221 1 1111111111  11 2256777787764     3688999877532  22222111


Q ss_pred             eeeeeeeEeecCCCCCEEEEEccCC-----eEEEEecC
Q 009380          504 ISAIPCRFHAHPHQVGTLAGATGGG-----QVYVWTSD  536 (536)
Q Consensus       504 ~~~~~~~~~~~p~~~~~lasgs~Dg-----~v~iW~~d  536 (536)
                      ...  ..+..   ++.+++.|+.++     .|.+||.+
T Consensus       243 ~~~--~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          243 RNA--GVCAV---NGLLYVVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             BSC--EEEEE---TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             ccC--eEEEE---CCEEEEECCcCCCcccccEEEEcCC
Confidence            111  11222   456777777654     37777753

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.02  E-value=0.035  Score=52.57  Aligned_cols=227  Identities=7%  Similarity=-0.039  Sum_probs=110.7

Q ss_pred             cEEEEEeC--CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC----CeEEEEECCCCeEEEeec
Q 009380          249 RMVVAGSK--LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD----GLIRLMDAEKEVFDLVYS  322 (536)
Q Consensus       249 ~~l~tg~~--dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~I~vwd~~~~~~~~~~~  322 (536)
                      .+++.|+.  ...+.+||..+..  ...+..+......-..+.  -++ .+++.|+.+    ..+.+||+.+.....+..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVF--WDN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTE--EEECCCCSCCCBSCEEEE--ETT-EEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCCC--EecCCCCCcccceeEEEE--ECC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            45666664  3578888887632  111111111111112222  243 666777654    678899999887665543


Q ss_pred             CCCc--eeEEEecCCCCCEEEEEECC------CeEEEEECCCCccceeEecc-CCCeEEEEEecCCCCEEEEEeC-----
Q 009380          323 SEYA--VFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSATEWLLH-EARINTIDFNPRNPNIMATSST-----  388 (536)
Q Consensus       323 ~~~~--i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h-~~~i~~i~~~p~~~~~l~s~s~-----  388 (536)
                      ...+  -.+++.. ++ .+++.|+.+      ..+.+||+.+.+-...-... ...-.+++.. ++ .+++.|+.     
T Consensus        88 ~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~  163 (306)
T 3ii7_A           88 PPTPRDSLAACAA-EG-KIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NG-LIYVCGGSLGNNV  163 (306)
T ss_dssp             CSSCCBSCEEEEE-TT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCEESCTT
T ss_pred             CCccccceeEEEE-CC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CC-EEEEECCCCCCCC
Confidence            2111  1122222 33 567777754      46899998876432211111 1111122222 23 56666653     


Q ss_pred             ----CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEeccCCCC
Q 009380          389 ----DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHHNNQTG  459 (536)
Q Consensus       389 ----dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~  459 (536)
                          -..+.+||+.+..-.   .+........-.++... ++.+++.|+.+     ..+.+||+.+.+-... . ..+..
T Consensus       164 ~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~~p~~  237 (306)
T 3ii7_A          164 SGRVLNSCEVYDPATETWT---ELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S-PMPWK  237 (306)
T ss_dssp             TCEECCCEEEEETTTTEEE---EECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C-CCSCC
T ss_pred             cccccceEEEeCCCCCeEE---ECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C-CCCCC
Confidence                345889998874210   00001111111122222 56677777654     3588999876432111 1 11111


Q ss_pred             ceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380          460 RWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR  493 (536)
Q Consensus       460 ~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~  493 (536)
                      +.-..  ++ .-++.+++.|+.+     ..+.+||..+.
T Consensus       238 r~~~~--~~-~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          238 GVTVK--CA-AVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             BSCCE--EE-EETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             cccee--EE-EECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            11111  11 1266778888754     46888988775

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.99  E-value=0.29  Score=47.37  Aligned_cols=231  Identities=12%  Similarity=0.006  Sum_probs=120.2

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCC-ceEEe---ccCCCCEEEEEEecC---CCCEEEEEEC----C
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDN-GIYLF---RTHLGPISGIVTQQY---CLSKIFTSCY----D  304 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~-~~~~~---~~h~~~V~~l~~~~~---~~~~l~s~s~----d  304 (536)
                      ....|+|.|  +|.++++ ..+|.|.+++..     +. .+..+   .........|+|+|+   + ..|+.+..    +
T Consensus        30 ~P~~ia~~p--dG~l~V~-e~~g~I~~~d~~-----G~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lyv~~~~~~~~  100 (354)
T 3a9g_A           30 VPWSIAPLG--GGRYLVT-ERPGRLVLISPS-----GKKLVASFDVANVGEAGLLGLALHPEFPKK-SWVYLYASYFAEG  100 (354)
T ss_dssp             CEEEEEEEE--TTEEEEE-ETTTEEEEECSS-----CEEEEEECCCCCSTTCSEEEEEECTTTTTS-CEEEEEEEEECGG
T ss_pred             CCeEEEEcC--CCeEEEE-eCCCEEEEEeCC-----CceEeeccceeecCCCceeeEEeCCCCCcC-CEEEEEEeccCCC
Confidence            467899999  8885555 556999988632     22 22221   112346889999997   4 45554433    3


Q ss_pred             ----CeEEEEECCCC--e---EEEe---ec--CCCceeEEEecCCCCCEEEEEEC-------------CCeEEEEECCCC
Q 009380          305 ----GLIRLMDAEKE--V---FDLV---YS--SEYAVFSLSQQPNNVNTLYFGEG-------------QGGLNIWDVRSR  357 (536)
Q Consensus       305 ----g~I~vwd~~~~--~---~~~~---~~--~~~~i~~l~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~  357 (536)
                          ..|..|+....  .   ...+   ..  .......|.|.|++ .++++.+.             .|.|..++....
T Consensus       101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~  179 (354)
T 3a9g_A          101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGR  179 (354)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred             CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCC
Confidence                67888887654  1   1111   11  11235679999998 55444322             256776665421


Q ss_pred             c-------cceeEe-ccCCCeEEEEEecCCCCEEEEEeCCC---cEEEEeCCCCCC----------C---CCCcceee-c
Q 009380          358 K-------SATEWL-LHEARINTIDFNPRNPNIMATSSTDG---TACIWDLRSMAT----------D---KPEPMKVL-S  412 (536)
Q Consensus       358 ~-------~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg---~i~iwdl~~~~~----------~---~~~~~~~~-~  412 (536)
                      -       ....+. ++. ....|+|+|+...++++-....   .|.+..  .+..          .   ...+.... .
T Consensus       180 ~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~  256 (354)
T 3a9g_A          180 PPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS  256 (354)
T ss_dssp             CCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred             CCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence            0       112222 332 3467999994435555443222   233332  2210          0   01122222 2


Q ss_pred             ccCceeEEEEc-------cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380          413 HKRAVHSAYFS-------PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       413 ~~~~v~~l~~s-------p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                      .......++|.       .+|.++++.-..+.|...++............ ..+.......+++.|||.++++..
T Consensus       257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~-~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF-FKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE-CTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee-ccCCCCCeeEEEECCCCcEEEEEe
Confidence            23467788884       46776766666778888887643222111100 001111223366788886655543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.95  E-value=0.059  Score=52.11  Aligned_cols=166  Identities=12%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             eEEEeecCCCceeEEEecCCCCCEEEEEE-------------CCCeEEEEECCCCc-cceeEe--c-----cCCCeEEEE
Q 009380          316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGE-------------GQGGLNIWDVRSRK-SATEWL--L-----HEARINTID  374 (536)
Q Consensus       316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-------------~dg~i~i~d~~~~~-~~~~~~--~-----h~~~i~~i~  374 (536)
                      .+..+.+.......+...+++  .+++++             .+|.|.++|+.+.. ....+.  +     ..-....|.
T Consensus        41 ~C~~i~~~~~G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~  118 (355)
T 3sre_A           41 NCNLVKGIDNGSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIS  118 (355)
T ss_dssp             CEEECTTCCSCCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEE
T ss_pred             CCEEeCCCCCCcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeE
Confidence            333333323455667777765  555554             68999999987431 122222  2     224677888


Q ss_pred             EecC--CCC-EEEEEeC--CCcEEEEeCCCCCCCCCCcceeec--ccCceeEEEEccCCCeEEEEeC-------------
Q 009380          375 FNPR--NPN-IMATSST--DGTACIWDLRSMATDKPEPMKVLS--HKRAVHSAYFSPSGSSLATTSF-------------  434 (536)
Q Consensus       375 ~~p~--~~~-~l~s~s~--dg~i~iwdl~~~~~~~~~~~~~~~--~~~~v~~l~~sp~g~~l~t~s~-------------  434 (536)
                      +.++  +.. ++++-..  +.+|.+|++...... ........  .-...+.+.+.++|.++++...             
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~  197 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH  197 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence            8763  432 4444333  467888887653211 11111122  2346789999999987766541             


Q ss_pred             ----CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc-CCCcEEEEcCCc
Q 009380          435 ----DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEVISPAQ  492 (536)
Q Consensus       435 ----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs-~dg~I~v~d~~~  492 (536)
                          .|.|..||.  .+ ...+...-     ...--++|+||++.|+++. ..+.|..|++..
T Consensus       198 ~~~~~g~vyr~d~--~~-~~~~~~~l-----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          198 LGLAWSFVTYYSP--ND-VRVVAEGF-----DFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             TTCCCEEEEEECT--TC-CEEEEEEE-----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccCCccEEEEEEC--Ce-EEEeecCC-----cccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence                244555554  22 22221110     1122378999998876654 568899999863

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.91  E-value=0.045  Score=52.07  Aligned_cols=224  Identities=8%  Similarity=0.066  Sum_probs=108.9

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----C-------CeEEEEECCCCeEE
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----D-------GLIRLMDAEKEVFD  318 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----d-------g~I~vwd~~~~~~~  318 (536)
                      +++.|+  ..+.+||..+..  .. ...+..............++ .+++.|+.    +       ..+.+||..+....
T Consensus         7 l~~~GG--~~~~~yd~~~~~--W~-~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANE--CY-CASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEET--TEEEEEETTTTE--EE-EEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred             EEEEcC--CceEEECCCCCe--Ee-cCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence            455666  578999988632  11 12222111122222233344 77777774    1       12778999888765


Q ss_pred             EeecCCCce--eEEEecCCCCCEEEEEECC--------CeEEEEECCCCccc--eeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          319 LVYSSEYAV--FSLSQQPNNVNTLYFGEGQ--------GGLNIWDVRSRKSA--TEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       319 ~~~~~~~~i--~~l~~~~~~~~~l~~g~~d--------g~i~i~d~~~~~~~--~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      .+.....+-  .+++.. ++ .+++.|+.+        ..+.+||+.+.+-.  ..+...... .+++.. ++ .+++.|
T Consensus        81 ~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv~G  155 (315)
T 4asc_A           81 GMPPLPSPRCLFGLGEA-LN-SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSH-MD-LVYVIG  155 (315)
T ss_dssp             ECCCBSSCEESCEEEEE-TT-EEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEEEC
T ss_pred             ECCCCCcchhceeEEEE-CC-EEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEE-CC-EEEEEe
Confidence            543222111  122222 33 566666632        35899998876421  111111111 222232 23 577777


Q ss_pred             eC-C-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCcceEEecc
Q 009380          387 ST-D-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTSMIHHN  455 (536)
Q Consensus       387 s~-d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg-----~I~iwd~~~~~~~~~~~~~  455 (536)
                      +. +     ..+.+||+.+.+-..  .............+.+  ++++++.|+.++     .+.+||+.+.+-... . .
T Consensus       156 G~~~~~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~  229 (315)
T 4asc_A          156 GKGSDRKCLNKMCVYDPKKFEWKE--LAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-E-A  229 (315)
T ss_dssp             CBCTTSCBCCCEEEEETTTTEEEE--CCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-C-C
T ss_pred             CCCCCCcccceEEEEeCCCCeEEE--CCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEEC-C-C
Confidence            75 2     468899988742110  0001111111122222  677778887654     488899876532221 1 1


Q ss_pred             CCCCceeeeeEEEEcCCCCEEEEEcCC--------------CcEEEEcCCcc
Q 009380          456 NQTGRWISSFRAIWGWDDSCVFIGNMT--------------RTVEVISPAQR  493 (536)
Q Consensus       456 ~~~~~~~~~~~~~~s~~g~~l~~gs~d--------------g~I~v~d~~~~  493 (536)
                      .+..+....  ++ .-++.+++.|+.+              ..|.+||+.+.
T Consensus       230 ~p~~r~~~~--~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~  278 (315)
T 4asc_A          230 FPQERSSLS--LV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK  278 (315)
T ss_dssp             CSSCCBSCE--EE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred             CCCccccee--EE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence            111111111  11 2256677777653              23677887765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.89  E-value=0.12  Score=50.60  Aligned_cols=142  Identities=15%  Similarity=0.216  Sum_probs=93.1

Q ss_pred             CEEEEEECCCeEEEEECCCC-eEEEeecC----CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-----------
Q 009380          296 SKIFTSCYDGLIRLMDAEKE-VFDLVYSS----EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-----------  359 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~-~~~~~~~~----~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-----------  359 (536)
                      ..++.+- ++.||.-++..+ ....+...    -..|..+..+|+| ++|+..+.. .|.|..+..+..           
T Consensus        33 t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           33 TRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEECSS-EEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEecCC-eEEEEEecCccccCccccccccc
Confidence            5555554 577888787733 23222221    2368889999998 788877655 899999874321           


Q ss_pred             -ceeEec------cCCCeEEEEEecCCCC--EEEEEeCCCcEEEEeCCCCCCCCCCcc-------eeecccCceeEEEEc
Q 009380          360 -ATEWLL------HEARINTIDFNPRNPN--IMATSSTDGTACIWDLRSMATDKPEPM-------KVLSHKRAVHSAYFS  423 (536)
Q Consensus       360 -~~~~~~------h~~~i~~i~~~p~~~~--~l~s~s~dg~i~iwdl~~~~~~~~~~~-------~~~~~~~~v~~l~~s  423 (536)
                       ...+..      ...+|..+.|||-+.+  .|++-..|+.|++||+..... .+..+       ........|.+++|.
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S~~Fg  188 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITDLEFS  188 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEEEEEC
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEEEEEc
Confidence             113332      2467999999997543  888888999999999987321 11111       111123678899999


Q ss_pred             cCCCeEEEEe--CCCcEEEE
Q 009380          424 PSGSSLATTS--FDDTIGIW  441 (536)
Q Consensus       424 p~g~~l~t~s--~dg~I~iw  441 (536)
                      .++-.|...+  ..|.|+-.
T Consensus       189 ~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          189 KDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TTSSCEEEEECTTSCEEEEE
T ss_pred             CCCcEEEEEecCCCCCEEEE
Confidence            9887777755  77877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.88  E-value=0.029  Score=53.30  Aligned_cols=228  Identities=7%  Similarity=0.006  Sum_probs=109.4

Q ss_pred             CccEEEEEeCC----CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----C-----CeEEEEECC
Q 009380          247 DVRMVVAGSKL----GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----D-----GLIRLMDAE  313 (536)
Q Consensus       247 ~~~~l~tg~~d----g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----d-----g~I~vwd~~  313 (536)
                      ++.+++.|+.+    ..+.+||..+..  ...+..+......- +++.. ++ .+++.|+.    +     ..+.+||+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGT--WLRLADLQVPRSGL-AGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTE--EEECCCCSSCCBSC-EEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCe--EeECCCCCcccccc-eEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCC
Confidence            55666766632    367888877532  11111111111111 22222 33 56666665    2     468899998


Q ss_pred             CCeEEEeecCCC--ceeEEEecCCCCCEEEEEECC-----CeEEEEECCCCccce--eEeccCCCeEEEEEecCCCCEEE
Q 009380          314 KEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ-----GGLNIWDVRSRKSAT--EWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       314 ~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d-----g~i~i~d~~~~~~~~--~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      +.....+.....  .-.+++.. ++ .+++.|+.+     ..+.+||+.+.+-..  .+...... .+++.. ++ .+++
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~-~iyv  173 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVI-DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVL-NR-LLYA  173 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEE-TT-EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TT-EEEE
T ss_pred             CCeEeECCCCCcCccccEEEEE-CC-EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccc-eEEEEE-CC-EEEE
Confidence            887655432211  11122222 33 566666533     368899988764321  11111111 122222 23 6777


Q ss_pred             EEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEec
Q 009380          385 TSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       385 s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~  454 (536)
                      .|+.+     ..+.+||+.+.+-....  ...........+.+  ++.+++.|+.+     ..+.+||+.+.+-...-  
T Consensus       174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--  247 (308)
T 1zgk_A          174 VGGFDGTNRLNSAECYYPERNEWRMIT--AMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA--  247 (308)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC--
T ss_pred             EeCCCCCCcCceEEEEeCCCCeEeeCC--CCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC--
Confidence            77654     45889998764311000  01111111122233  66777777764     45899998765322111  


Q ss_pred             cCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcc
Q 009380          455 NNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQR  493 (536)
Q Consensus       455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~  493 (536)
                      ..+..+....  ++ .-++.+++.|+.+     ..|.+||..+.
T Consensus       248 ~~p~~r~~~~--~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          248 PMKHRRSALG--IT-VHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CCSSCCBSCE--EE-EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCCCCccceE--EE-EECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            1111111111  11 1256677777654     34778887665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.85  E-value=0.71  Score=49.75  Aligned_cols=228  Identities=6%  Similarity=0.049  Sum_probs=125.7

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~  314 (536)
                      .|.++...+  ++..|..|+. +-|..++..+    .. ...+. .....|.++....++  .|..|+.+ -+.+++..+
T Consensus       192 ~i~~i~~d~--~~~~lWigt~-~Gl~~~~~~~----~~-~~~~~~l~~~~i~~i~~d~~g--~lWigT~~-Gl~~~~~~~  260 (758)
T 3ott_A          192 FVNSLLEDT--TRQCVWIGTE-GYLFQYFPST----GQ-IKQTEAFHNNSIKSLALDGNG--DLLAGTDN-GLYVYHNDT  260 (758)
T ss_dssp             CEEEEEEET--TTTEEEEEEE-EEEEEEETTT----TE-EEEEEEEEEEEEEEEEECTTC--CEEEEETT-EEEEECCTT
T ss_pred             eeEEEEEEC--CCCEEEEEEC-CCCeEEcCCC----Ce-EEeccCCCCCeEEEEEEcCCC--CEEEEeCC-ceeEEecCC
Confidence            488888776  6665555654 4577788764    22 11111 122357777776665  45555544 588889887


Q ss_pred             CeEEEeec--------CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-------ccCCCeEEEEEecCC
Q 009380          315 EVFDLVYS--------SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-------LHEARINTIDFNPRN  379 (536)
Q Consensus       315 ~~~~~~~~--------~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------~h~~~i~~i~~~p~~  379 (536)
                      +.+.....        ....|.++....++  .|.+|+..| +.++... . ....+.       .....|.++....+|
T Consensus       261 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g  335 (758)
T 3ott_A          261 TPLQHIIHDSRNIQSLTNNIIWNIFADQEH--NIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKG  335 (758)
T ss_dssp             SCCEEECCCTTCTTSCSCSCEEEEEECTTC--CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred             CcEEEEEcCCCCcCcCCcCeEEEEEEcCCC--CEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCC
Confidence            66544321        12358888887766  466777776 5554322 1 111211       123468888877766


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec--------ccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceE
Q 009380          380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--------HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSM  451 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~--------~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~  451 (536)
                      .  |..|+.+| +..++..++...   ......        ....|.++.-..+|.+ ..|+. +-|..||..+.+... 
T Consensus       336 ~--lWiGt~~G-l~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~-~GL~~~~~~~~~~~~-  406 (758)
T 3ott_A          336 F--YWFGGANG-LIRFTDPAGERH---DAIWYRMGDKTYPLSHNRIRHIYEDKEQQL-WIATD-GSINRYDYATRQFIH-  406 (758)
T ss_dssp             C--EEEEETTE-EEEESCTTSSCC---CCEEECTTCSSSCCSCSCEEEEEECTTSCE-EEEET-TEEEEEETTTTEEEE-
T ss_pred             C--EEEeeCCc-ceeecccccccc---eeEEeccCCcCCCCCCCceEEEEECCCCCE-EEEeC-CcHhhcCcCCCcEEE-
Confidence            3  44445555 667776543210   111111        1246888888888874 44554 469999987654322 


Q ss_pred             EeccCC----CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          452 IHHNNQ----TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       452 ~~~~~~----~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      +.....    ....+.  .+....+| .|.+|+..+-|.+++..
T Consensus       407 ~~~~~~~~~~~~~~v~--~i~~d~~g-~lWigT~~~Gl~~~~~~  447 (758)
T 3ott_A          407 YNIVDNTGTYNTNWTY--YIFEDTAG-QLWISTCLGGIFVVDKH  447 (758)
T ss_dssp             EEEECCC--CBSSSEE--EEEECTTS-EEEEEESSSCEEEEEHH
T ss_pred             eecCCCcCCCCCceEE--EEEEcCCC-CEEEEECCCceEEEccc
Confidence            221111    111222  23334454 56677776678888754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.83  E-value=0.43  Score=46.86  Aligned_cols=255  Identities=8%  Similarity=0.042  Sum_probs=153.5

Q ss_pred             CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCC
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN  336 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~  336 (536)
                      ..+|.|-|+....   ...+.-..    .-+.-.+|.. +.|+--. ..++.++|+++......+.....|.-=.|-.. 
T Consensus        47 ~~~vvIiDl~~~~---~~~rrpi~----AdsAIMnP~~-~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~-  116 (494)
T 1bpo_A           47 QAQVVIIDMNDPS---NPIRRPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-  116 (494)
T ss_dssp             CCEEEEEETTSTT---SCEEEECC----CSEEEECSSS-SCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET-
T ss_pred             CCeEEEEECCCCC---cceecccc----cceeeeCCCC-cEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC-
Confidence            3479999998742   22221111    1234567775 5555554 88999999999877777776677777777655 


Q ss_pred             CCEEEEEECCCeEEEEECCC-CccceeEecc----CCCeEEEEEecCCCCEEEEEe------CCCcEEEEeCCCCCCCCC
Q 009380          337 VNTLYFGEGQGGLNIWDVRS-RKSATEWLLH----EARINTIDFNPRNPNIMATSS------TDGTACIWDLRSMATDKP  405 (536)
Q Consensus       337 ~~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h----~~~i~~i~~~p~~~~~l~s~s------~dg~i~iwdl~~~~~~~~  405 (536)
                       +.|+..+.. .|+.|++.. ..++..+..|    ...|..-..+++...++++|-      -.|.+.+|.....     
T Consensus       117 -~~l~lVT~t-aVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----  189 (494)
T 1bpo_A          117 -NTVALVTDN-AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----  189 (494)
T ss_dssp             -TEEEEECSS-EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----
T ss_pred             -CeEEEEcCC-eeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----
Confidence             467776665 899999974 3456666544    345667777887743444442      2477889998763     


Q ss_pred             CcceeecccCceeEEEEccCC---CeEEEEeC---CCcEEEEeCCCC---Ccc---eEEe--ccC-CCCceeeeeEEEEc
Q 009380          406 EPMKVLSHKRAVHSAYFSPSG---SSLATTSF---DDTIGIWSGVNF---ENT---SMIH--HNN-QTGRWISSFRAIWG  470 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g---~~l~t~s~---dg~I~iwd~~~~---~~~---~~~~--~~~-~~~~~~~~~~~~~s  470 (536)
                      ....+.+|......+.+.-+.   ..|+.+..   .+.++|.++...   .+.   ....  ... ....  ..+.+..+
T Consensus       190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~D--FPvamqvs  267 (494)
T 1bpo_A          190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND--FPVAMQIS  267 (494)
T ss_dssp             CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTC--CEEEEEEE
T ss_pred             ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccC--ceeEEEec
Confidence            444555776665554443221   23444433   268999988533   111   1111  111 1111  12235567


Q ss_pred             CCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEE
Q 009380          471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW  533 (536)
Q Consensus       471 ~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW  533 (536)
                      +.-..++.-+.-|.|++||+.++.++..-.-....+.  .-+.+... .-+++.+..|.|.--
T Consensus       268 ~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF--~t~~~~~~-~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          268 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF--VTAPHEAT-AGIIGVNRKGQVLSV  327 (494)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE--EEEEETTT-TEEEEEETTCEEEEE
T ss_pred             ccCCEEEEEecCceEEEEecccceeeeeecccCCceE--EecccCCC-CcEEEEccCceEEEE
Confidence            7777888999999999999999998876553333333  12233322 455666677776543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.77  E-value=0.05  Score=51.58  Aligned_cols=221  Identities=10%  Similarity=0.020  Sum_probs=106.8

Q ss_pred             CEEEEEEC----CCeEEEEECCCCeEEEeecCCC--ceeEEEecCCCCCEEEEEEC----C-----CeEEEEECCCCccc
Q 009380          296 SKIFTSCY----DGLIRLMDAEKEVFDLVYSSEY--AVFSLSQQPNNVNTLYFGEG----Q-----GGLNIWDVRSRKSA  360 (536)
Q Consensus       296 ~~l~s~s~----dg~I~vwd~~~~~~~~~~~~~~--~i~~l~~~~~~~~~l~~g~~----d-----g~i~i~d~~~~~~~  360 (536)
                      .+++.|+.    -..+.+||..+.....+.....  .-.+++.. ++ .+++.|+.    +     ..+.+||+.+.+-.
T Consensus        26 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           26 LIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             CEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            55555553    2468889998887665432111  11122222 33 56666665    2     36889998876422


Q ss_pred             e--eEeccCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380          361 T--EWLLHEARINTIDFNPRNPNIMATSSTD-----GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       361 ~--~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      .  .+....... +++.. ++ .+++.|+.+     ..+.+||+.+.+-....  ...........+.+  ++.+++.|+
T Consensus       104 ~~~~~p~~r~~~-~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~iyv~GG  176 (308)
T 1zgk_A          104 PCAPMSVPRNRI-GVGVI-DG-HIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLTRRIGVGVAVL--NRLLYAVGG  176 (308)
T ss_dssp             ECCCCSSCCBTC-EEEEE-TT-EEEEECCEETTEECCCEEEEETTTTEEEECC--CCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             ECCCCCcCcccc-EEEEE-CC-EEEEEcCCCCCcccccEEEECCCCCeEeECC--CCCccccceEEEEE--CCEEEEEeC
Confidence            1  111111111 22222 24 577776643     35888998764311000  01111111122222  567777777


Q ss_pred             CC-----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCcccc--ceeccC
Q 009380          434 FD-----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRRS--VATLQS  501 (536)
Q Consensus       434 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~~--~~~l~~  501 (536)
                      .+     ..+.+||+.+.+-... . ..+..+....  ++ .-++.+++.|+.+     ..+.+||+.+.+-  +..+..
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  251 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMI-T-AMNTIRSGAG--VC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH  251 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEEC-C-CCSSCCBSCE--EE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred             CCCCCcCceEEEEeCCCCeEeeC-C-CCCCccccce--EE-EECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence            54     4588999875432211 1 1111111111  11 1266777777664     4689999877532  222221


Q ss_pred             CceeeeeeeEeecCCCCCEEEEEccC-----CeEEEEec
Q 009380          502 PYISAIPCRFHAHPHQVGTLAGATGG-----GQVYVWTS  535 (536)
Q Consensus       502 ~~~~~~~~~~~~~p~~~~~lasgs~D-----g~v~iW~~  535 (536)
                      .....  ..+..   ++.+++.|+.+     ..|.+||+
T Consensus       252 ~r~~~--~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          252 RRSAL--GITVH---QGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             CCBSC--EEEEE---TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             Cccce--EEEEE---CCEEEEEcCcCCCcccceEEEEcC
Confidence            11111  11222   44677777654     34677765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.77  E-value=0.056  Score=52.38  Aligned_cols=241  Identities=8%  Similarity=-0.042  Sum_probs=112.2

Q ss_pred             CccEEEEEeCC-CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-C---------CeEEEEECCCC
Q 009380          247 DVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-D---------GLIRLMDAEKE  315 (536)
Q Consensus       247 ~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-d---------g~I~vwd~~~~  315 (536)
                      ++.+++.|+.+ ..+.+||+.........+..+......-.+++.. ++ .+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DG-NLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TT-EEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CC-EEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56677777644 4688888863111122222222011111122222 34 56666665 2         46889999988


Q ss_pred             eEEEeecCC-Cce--eEEEecCCCCCEEEEEECC---------------------------------------CeEEEEE
Q 009380          316 VFDLVYSSE-YAV--FSLSQQPNNVNTLYFGEGQ---------------------------------------GGLNIWD  353 (536)
Q Consensus       316 ~~~~~~~~~-~~i--~~l~~~~~~~~~l~~g~~d---------------------------------------g~i~i~d  353 (536)
                      ....+.... .+-  .+++. .++ .+++.|+.+                                       ..+.+||
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HNG-KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ETT-EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             cEEECCCCCCcccccceEEE-ECC-EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            776554322 111  12222 333 677777754                                       4799999


Q ss_pred             CCCCccceeEecc-CCCe-EEEEEecCCCCEEEEEeC------CCcEEEEeC--CCCCCCCCCcceeecccCceeEEEEc
Q 009380          354 VRSRKSATEWLLH-EARI-NTIDFNPRNPNIMATSST------DGTACIWDL--RSMATDKPEPMKVLSHKRAVHSAYFS  423 (536)
Q Consensus       354 ~~~~~~~~~~~~h-~~~i-~~i~~~p~~~~~l~s~s~------dg~i~iwdl--~~~~~~~~~~~~~~~~~~~v~~l~~s  423 (536)
                      +.+.+-...-... ...- .+++..  +..+++.|+.      ...+.+||+  .+..  -..+...........+.+..
T Consensus       175 ~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~--W~~~~~~~~~~~~~~~~~~~  250 (357)
T 2uvk_A          175 PSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLK--WNKLAPVSSPDGVAGGFAGI  250 (357)
T ss_dssp             TTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CE--EEECCCSSTTTCCBSCEEEE
T ss_pred             CCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCc--EEecCCCCCCcccccceEEE
Confidence            9876532221111 1111 233333  2356777653      245777887  3321  00000010011111111222


Q ss_pred             cCCCeEEEEeCC----------------------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          424 PSGSSLATTSFD----------------------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       424 p~g~~l~t~s~d----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                      .++.+++.|+.+                      ..+.+||+.+.+-...-..  +..+.-.   .+...++++++.|+.
T Consensus       251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~--p~~r~~~---~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL--SQGRAYG---VSLPWNNSLLIIGGE  325 (357)
T ss_dssp             ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC--SSCCBSS---EEEEETTEEEEEEEE
T ss_pred             ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC--CCCcccc---eeEEeCCEEEEEeee
Confidence            356777777632                      2477899875543222111  1111111   112246778888876


Q ss_pred             CC------cEEEEcCCccccceecc
Q 009380          482 TR------TVEVISPAQRRSVATLQ  500 (536)
Q Consensus       482 dg------~I~v~d~~~~~~~~~l~  500 (536)
                      ++      .|.++++.+++.+....
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             CCCCCEeeeEEEEEEcCcEeEeeec
Confidence            53      35666888776655443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.76  E-value=0.48  Score=46.51  Aligned_cols=263  Identities=10%  Similarity=0.063  Sum_probs=158.3

Q ss_pred             ceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCC
Q 009380          215 SCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC  294 (536)
Q Consensus       215 g~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~  294 (536)
                      ..|.+-|+........+.  -.--+.-.+|  ..+.||-=. ..++.|+|+++    ...+..+.-. ..|.-=.|-.. 
T Consensus        48 ~~vvIiDl~~~~~~~rrp--i~AdsAIMnP--~~~iiALra-g~~lQiFnle~----K~klks~~~~-e~VvfWkWis~-  116 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRP--ISADSAIMNP--ASKVIALKA-GKTLQIFNIEM----KSKMKAHTMT-DDVTFWKWISL-  116 (494)
T ss_dssp             CEEEEEETTSTTSCEEEE--CCCSEEEECS--SSSCEEEEE-TTEEEEEETTT----TEEEEEEECS-SCCCEEEEEET-
T ss_pred             CeEEEEECCCCCcceecc--cccceeeeCC--CCcEEEEec-CCeEEEEchHH----hhhhcceecC-CCceEEEecCC-
Confidence            367777774432222222  1233556778  667777655 67999999997    4555555443 34555566654 


Q ss_pred             CCEEEEEECCCeEEEEECCCC-eEEEeecC-----CCceeEEEecCCCCCEEEEEE------CCCeEEEEECCCCcccee
Q 009380          295 LSKIFTSCYDGLIRLMDAEKE-VFDLVYSS-----EYAVFSLSQQPNNVNTLYFGE------GQGGLNIWDVRSRKSATE  362 (536)
Q Consensus       295 ~~~l~s~s~dg~I~vwd~~~~-~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~------~dg~i~i~d~~~~~~~~~  362 (536)
                       +.|+-.+ +..|+-|+++.. .+..++..     ...|.....+++...++++|-      -.|.+.+|..+.+ ..+.
T Consensus       117 -~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~  193 (494)
T 1bpo_A          117 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQP  193 (494)
T ss_dssp             -TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEE
T ss_pred             -CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccch
Confidence             4555554 668999999753 34444432     467888888888844444443      2478899997643 4566


Q ss_pred             EeccCCCeEEEEEec--CCCCEEEEEeCC---CcEEEEeCCCC-CCCCCCcc---eee----cccCceeEEEEccCCCeE
Q 009380          363 WLLHEARINTIDFNP--RNPNIMATSSTD---GTACIWDLRSM-ATDKPEPM---KVL----SHKRAVHSAYFSPSGSSL  429 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p--~~~~~l~s~s~d---g~i~iwdl~~~-~~~~~~~~---~~~----~~~~~v~~l~~sp~g~~l  429 (536)
                      +.+|...-..+.+..  ....+|+.+...   +.++|-++... ........   .+.    ....-..++..++....+
T Consensus       194 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi  273 (494)
T 1bpo_A          194 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV  273 (494)
T ss_dssp             ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred             heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence            677765554444431  111355555543   78999998653 11111111   111    123345678888877889


Q ss_pred             EEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccc
Q 009380          430 ATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSV  496 (536)
Q Consensus       430 ~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~  496 (536)
                      +..+.-|.|.+||+.++.++..-+....     .+|..+......-+++.+..|.|.-..++....+
T Consensus       274 yviTK~G~i~lyDleTgt~i~~nrIs~~-----~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          274 FLITKYGYIHLYDLETGTCIYMNRISGE-----TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             EEEecCceEEEEecccceeeeeecccCC-----ceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            9999999999999999988776653322     1222333444445666667887777777665544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.71  E-value=0.16  Score=48.17  Aligned_cols=182  Identities=12%  Similarity=-0.012  Sum_probs=89.0

Q ss_pred             EEEEEECCCeEEEEECCCCeEEEeecC-C-CceeEEEecCCCCCEEEEEEC-----C------CeEEEEECCCCccce--
Q 009380          297 KIFTSCYDGLIRLMDAEKEVFDLVYSS-E-YAVFSLSQQPNNVNTLYFGEG-----Q------GGLNIWDVRSRKSAT--  361 (536)
Q Consensus       297 ~l~s~s~dg~I~vwd~~~~~~~~~~~~-~-~~i~~l~~~~~~~~~l~~g~~-----d------g~i~i~d~~~~~~~~--  361 (536)
                      +++.|+  ..+.+||..++........ . ..........++ .+++.|+.     .      ..+.+||..+.+-..  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344444  5789999999876542211 1 111222222344 67788873     1      137888988764311  


Q ss_pred             eEeccCCCeEEEEEecCCCCEEEEEeCC--------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380          362 EWLLHEARINTIDFNPRNPNIMATSSTD--------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~d--------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      .+...... .+++..  +..+++.|+.+        ..+.+||+.+.+-..  .......... .+++. -++++++.|+
T Consensus        84 ~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r~~-~~~~~-~~~~iyv~GG  156 (315)
T 4asc_A           84 PLPSPRCL-FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE--SDPLPYVVYG-HTVLS-HMDLVYVIGG  156 (315)
T ss_dssp             CBSSCEES-CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE--CCCCSSCCBS-CEEEE-ETTEEEEECC
T ss_pred             CCCcchhc-eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE--CCCCCCcccc-eeEEE-ECCEEEEEeC
Confidence            11100111 122222  33677777632        458899988742100  0001111111 12222 3566777777


Q ss_pred             C-C-----CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCC-----cEEEEcCCcc
Q 009380          434 F-D-----DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR-----TVEVISPAQR  493 (536)
Q Consensus       434 ~-d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg-----~I~v~d~~~~  493 (536)
                      . +     ..+.+||..+.+-... . ..+..+....  + ..-++++++.|+.++     .+.+||..+.
T Consensus       157 ~~~~~~~~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          157 KGSDRKCLNKMCVYDPKKFEWKEL-A-PMQTARSLFG--A-TVHDGRIIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             BCTTSCBCCCEEEEETTTTEEEEC-C-CCSSCCBSCE--E-EEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred             CCCCCcccceEEEEeCCCCeEEEC-C-CCCCchhceE--E-EEECCEEEEEeccCCCCccceEEEEECCCC
Confidence            6 2     3589999876432111 1 1111111111  1 122667777777653     5888998775

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.68  E-value=0.23  Score=48.15  Aligned_cols=233  Identities=11%  Similarity=-0.050  Sum_probs=118.8

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEecccccCccccc-----cccCCceEEEEEEecCC----ccEEEE
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA-----RIMPGRITQMKFLPCSD----VRMVVA  253 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~-----~~~~~~I~~v~~~p~~~----~~~l~t  253 (536)
                      ...-+.+.|.++|+++....           +|.|.+++.... ..+.     ..-......|+|+|  +    +.++++
T Consensus        28 l~~P~~ia~~pdG~l~V~e~-----------~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~   93 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTER-----------PGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLY   93 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEET-----------TTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeC-----------CCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCC--CCCcCCEEEEE
Confidence            34567788889998777542           245555542111 1111     11135688999999  6    444444


Q ss_pred             EeC---C----CcEEEEECCCCCCC---CCce-EEecc-CCCCEEEEEEecCCCCEEEEEEC-------------CCeEE
Q 009380          254 GSK---L----GNITFWNLDSQQDE---DNGI-YLFRT-HLGPISGIVTQQYCLSKIFTSCY-------------DGLIR  308 (536)
Q Consensus       254 g~~---d----g~v~iwd~~~~~~~---~~~~-~~~~~-h~~~V~~l~~~~~~~~~l~s~s~-------------dg~I~  308 (536)
                      -+.   +    +.|..|+.......   ...+ ..+.. .......|.|.|++ .++++.+.             .|.|.
T Consensus        94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~  172 (354)
T 3a9g_A           94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKIL  172 (354)
T ss_dssp             EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred             EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEE
Confidence            332   3    56777776642100   0111 11221 11124679999998 66665432             24566


Q ss_pred             EEECCCC---------eEEEeecCCCceeEEEecCCCCCEEEEEECCC---eEEEEECCC--------C--------ccc
Q 009380          309 LMDAEKE---------VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG---GLNIWDVRS--------R--------KSA  360 (536)
Q Consensus       309 vwd~~~~---------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg---~i~i~d~~~--------~--------~~~  360 (536)
                      .++....         ......++ .....++|+|+..+++++-....   .|.+...-.        +        .++
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~  251 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPV  251 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCE
Confidence            6665532         11122222 34678999994435444432221   244432110        0        122


Q ss_pred             eeEeccCCCeEEEEEe-------cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEE
Q 009380          361 TEWLLHEARINTIDFN-------PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       361 ~~~~~h~~~i~~i~~~-------p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~  432 (536)
                      ..+.........+.|.       .++ .++++.-..+.|...++..... ......+. .....+..+++.|+|.++++.
T Consensus       252 ~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          252 IDTGSETWAPSGASFVHGDMFPGLRG-WLLIACLRGSMLAAVNFGDNME-VRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EECTTCCCCEEEEEECCSSSCGGGTT-EEEEEETTTTEEEEEEECGGGC-EEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             eecCCCCcCCcceEEECCCCCcccCC-cEEEEEcCCCEEEEEEECCCCc-ccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            2231123456788884       334 5666666667888888765210 00011122 224578899999999766655


Q ss_pred             e
Q 009380          433 S  433 (536)
Q Consensus       433 s  433 (536)
                      .
T Consensus       330 ~  330 (354)
T 3a9g_A          330 S  330 (354)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.42  Score=45.74  Aligned_cols=190  Identities=8%  Similarity=0.043  Sum_probs=102.9

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCC--CceeEEEec--CCCCCEEEEE--ECCCeEEEEECCCCccceeEec----
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE--YAVFSLSQQ--PNNVNTLYFG--EGQGGLNIWDVRSRKSATEWLL----  365 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~--~~i~~l~~~--~~~~~~l~~g--~~dg~i~i~d~~~~~~~~~~~~----  365 (536)
                      ..++.++.||.|.-+|..+|+....+...  .++....-.  +.+ ..++++  +.||.|..+|..+|.....+..    
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            57899999999999999999887776544  233322111  112 244444  5899999999988754433321    


Q ss_pred             cCCCeEE---EEE------ecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCc--------eeEEEEc-----
Q 009380          366 HEARINT---IDF------NPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRA--------VHSAYFS-----  423 (536)
Q Consensus       366 h~~~i~~---i~~------~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~--------v~~l~~s-----  423 (536)
                      ...++..   ...      + .+ ..+++|+.+|.+...|+++++     .+-......+        ..|....     
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~-~~-g~Vy~Gs~~g~l~ald~~tG~-----~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d  162 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIV-ED-EKVYTGSMRTIMYTINMLNGE-----IISAFGPGSKNGYFGSQSVDCSPEEKIKLQ  162 (339)
T ss_dssp             TTCSEEEECC-----------CC-EEEEECEEEEEEEEEETTTCC-----EEEEESTTCBCC------------------
T ss_pred             eccccccCCCceeecccccc-cC-CEEEEEecCCEEEEEECCCCc-----EEEEEecCCCcccccccccccccccccccc
Confidence            1122221   000      0 12 478899999999999999975     2222221111        0011110     


Q ss_pred             cCCCeEEEEeCCCcEEEEeCCCCCcceEEecc---CC-CCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce
Q 009380          424 PSGSSLATTSFDDTIGIWSGVNFENTSMIHHN---NQ-TGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA  497 (536)
Q Consensus       424 p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---~~-~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~  497 (536)
                      -.+..|+.+..+..+.+.+ ++++ ...+...   .. ....+. -....+.++.+ ++++.||.|..+|..+|..+.
T Consensus       163 ~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~-~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          163 ECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLA-LQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             --CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHH-TTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             cCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccc-cccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            1235677777777777776 4443 2222100   00 000000 00001234555 457788999999988887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.48  E-value=0.44  Score=53.87  Aligned_cols=253  Identities=8%  Similarity=0.035  Sum_probs=141.5

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV  337 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~  337 (536)
                      .+|.|-|+..+.   ...+.-.    ..-+.-.+|.. +.|+.- ...++.|+|+++......+....+|.-=.|-..  
T Consensus        48 ~~vvIidl~~~~---~~~rrpi----~AdsAIMnP~~-~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~--  116 (1630)
T 1xi4_A           48 AQVVIIDMNDPS---NPIRRPI----SADSAIMNPAS-KVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--  116 (1630)
T ss_pred             ceEEEEECCCCC---Ccccccc----cchhhccCCCc-ceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCC--
Confidence            478899988742   1111111    11233456765 444444 478999999998766666666667776677654  


Q ss_pred             CEEEEEECCCeEEEEECCC-CccceeEecc----CCCeEEEEEecCCCCEEEEEe------CCCcEEEEeCCCCCCCCCC
Q 009380          338 NTLYFGEGQGGLNIWDVRS-RKSATEWLLH----EARINTIDFNPRNPNIMATSS------TDGTACIWDLRSMATDKPE  406 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~-~~~~~~~~~h----~~~i~~i~~~p~~~~~l~s~s------~dg~i~iwdl~~~~~~~~~  406 (536)
                      +.|+..+.. .|+.|++.. ..++..+..|    ...|..-..+++...++++|-      -.|.+.+|.....     .
T Consensus       117 ~~l~lVT~~-aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-----~  190 (1630)
T 1xi4_A          117 NTVALVTDN-AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----V  190 (1630)
T ss_pred             CeeEEEcCC-eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-----c
Confidence            466666655 899999964 3444445444    456767777787744444443      3478889988763     3


Q ss_pred             cceeecccCceeEEEEcc--C-CCeEEEEeC---CCcEEEEeCCCC---CcceE-----EeccC-CCCceeeeeEEEEcC
Q 009380          407 PMKVLSHKRAVHSAYFSP--S-GSSLATTSF---DDTIGIWSGVNF---ENTSM-----IHHNN-QTGRWISSFRAIWGW  471 (536)
Q Consensus       407 ~~~~~~~~~~v~~l~~sp--~-g~~l~t~s~---dg~I~iwd~~~~---~~~~~-----~~~~~-~~~~~~~~~~~~~s~  471 (536)
                      ...+.+|......+....  . ...++.+..   .+.++|-++...   .+...     +.... ....  ..+.+..++
T Consensus       191 sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D--fpv~~~vs~  268 (1630)
T 1xi4_A          191 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND--FPVAMQISE  268 (1630)
T ss_pred             chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC--cceEEEecc
Confidence            334446665554444431  1 123332222   267888888542   11110     11110 0111  112244566


Q ss_pred             CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          472 DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                      .-..++.-+.-|.|++||+.++.++..-.-....+.  ..+.+... .-+++.+..|.|.-
T Consensus       269 k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF--~~~~~~~~-~g~~~vnr~G~vl~  326 (1630)
T 1xi4_A          269 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF--VTAPHEAT-AGIIGVNRKGQVLS  326 (1630)
T ss_pred             ccCEEEEEecCceEEEEecccchhhhhccccCCceE--EeccCCCC-CceEEEcCCceEEE
Confidence            666788888999999999999988765442222222  12223222 33445556666543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.46  E-value=0.073  Score=47.17  Aligned_cols=134  Identities=12%  Similarity=0.050  Sum_probs=79.2

Q ss_pred             CEEEEEECCCeEEEEECCCCeE------EEeecC--CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVF------DLVYSS--EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE  367 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~------~~~~~~--~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~  367 (536)
                      .+|+....| +++.=....+..      ....+.  =..+..++|+|++ . |++. .+|.++-.+..+.... .+.+..
T Consensus         5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G-~-LYaV-~~G~Ly~~~~~t~~~~-~W~~s~   79 (236)
T 1tl2_A            5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGG-E-LYGV-LNDKIYKGTPPTHDND-NWMGRA   79 (236)
T ss_dssp             CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTS-C-EEEE-ETTEEEEESCCCSTTC-CHHHHC
T ss_pred             eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCc-c-EEEE-eCCeEEEECCCCCCcc-cccccc
Confidence            567777777 776665555431      122222  2478899999977 4 4444 7788888886553321 111112


Q ss_pred             CC--------eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce--eeccc---CceeEEEEccCCCeEEEEeC
Q 009380          368 AR--------INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK--VLSHK---RAVHSAYFSPSGSSLATTSF  434 (536)
Q Consensus       368 ~~--------i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~--~~~~~---~~v~~l~~sp~g~~l~t~s~  434 (536)
                      ..        -.++.|.|++ .+.++  .||.|+-++-.+....  ..+.  ..-..   ..+..|.|.|+|.+.++.  
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~--~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--  152 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTD--NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--  152 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC--CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred             cEecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCC--ceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence            22        3788999987 45555  4699988875442211  1110  01011   467999999999866665  


Q ss_pred             CCcEEEE
Q 009380          435 DDTIGIW  441 (536)
Q Consensus       435 dg~I~iw  441 (536)
                      |+.+.-+
T Consensus       153 dg~lyr~  159 (236)
T 1tl2_A          153 GQQFYKA  159 (236)
T ss_dssp             TTEEEEE
T ss_pred             CCcEEec
Confidence            7775433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.44  E-value=0.15  Score=48.34  Aligned_cols=225  Identities=8%  Similarity=0.017  Sum_probs=104.6

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEecc-CCCCEEEEEEecCCCCEEEEEEC----CC-------eEEEEECCCCeE
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-HLGPISGIVTQQYCLSKIFTSCY----DG-------LIRLMDAEKEVF  317 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~----dg-------~I~vwd~~~~~~  317 (536)
                      +++.|+.  .+.+||..+..  ... ..... ....-.++ ...++ .+++.|+.    ++       .+.+||..+...
T Consensus        18 i~~~GG~--~~~~yd~~~~~--W~~-~~~~~~~~r~~~~~-~~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   90 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENE--CYL-TALAEQIPRNHSSI-VTQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW   90 (318)
T ss_dssp             EEEECSS--EEEEEETTTTE--EEE-EEECTTSCSSEEEE-ECSSS-CEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred             hhhcccc--ceEEECCCCCc--eec-ccCCccCCccceEE-EEECC-EEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence            4455553  37888887632  111 11111 11112222 23344 67777773    12       277889988876


Q ss_pred             EEeecCCC--ceeEEEecCCCCCEEEEEECC-------CeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEEEEEe
Q 009380          318 DLVYSSEY--AVFSLSQQPNNVNTLYFGEGQ-------GGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIMATSS  387 (536)
Q Consensus       318 ~~~~~~~~--~i~~l~~~~~~~~~l~~g~~d-------g~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l~s~s  387 (536)
                      ..+.....  .-.+++.. ++ .+++.|+.+       ..+.+||+.+.+-...-...... -.+++.. ++ .+++.|+
T Consensus        91 ~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG  166 (318)
T 2woz_A           91 VGLPPLPSARCLFGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH-NG-MIYCLGG  166 (318)
T ss_dssp             EECSCBSSCBCSCEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE-TT-EEEEECC
T ss_pred             EECCCCCccccccceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE-CC-EEEEEcC
Confidence            65432211  11122222 33 577777753       35888998876432111100000 0122222 23 5667776


Q ss_pred             C------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCcceEEeccC
Q 009380          388 T------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD-----DTIGIWSGVNFENTSMIHHNN  456 (536)
Q Consensus       388 ~------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d-----g~I~iwd~~~~~~~~~~~~~~  456 (536)
                      .      -..+.+||+.+.+-.  .. ........-.+++. -++.+++.|+.+     ..+.+||+.+.+-... . ..
T Consensus       167 ~~~~~~~~~~~~~yd~~~~~W~--~~-~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~-~~  240 (318)
T 2woz_A          167 KTDDKKCTNRVFIYNPKKGDWK--DL-APMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T-EF  240 (318)
T ss_dssp             EESSSCBCCCEEEEETTTTEEE--EE-CCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C-CC
T ss_pred             CCCCCCccceEEEEcCCCCEEE--EC-CCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C-CC
Confidence            4      235889998874210  00 00011111112222 256777777654     3477898876532211 1 11


Q ss_pred             CCCceeeeeEEEEcCCCCEEEEEcCC--------------CcEEEEcCCccc
Q 009380          457 QTGRWISSFRAIWGWDDSCVFIGNMT--------------RTVEVISPAQRR  494 (536)
Q Consensus       457 ~~~~~~~~~~~~~s~~g~~l~~gs~d--------------g~I~v~d~~~~~  494 (536)
                      +..+....  + ...++.+++.|+.+              ..+.+||..+.+
T Consensus       241 p~~r~~~~--~-~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          241 PQERSSIS--L-VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             SSCCBSCE--E-EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             CCcccceE--E-EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            11111111  1 12356677777654              347778876653

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.11  Score=49.82  Aligned_cols=192  Identities=12%  Similarity=0.049  Sum_probs=103.0

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC-CCCEEEEEE--ecCCCCEEEEE--ECCCeEEEEECCCCeEEEeec
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH-LGPISGIVT--QQYCLSKIFTS--CYDGLIRLMDAEKEVFDLVYS  322 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~--~~~~~~~l~s~--s~dg~I~vwd~~~~~~~~~~~  322 (536)
                      +.+++.++.||.|.-+|..+    ++....+... ..++....-  .+.+ ..++.+  +.||.|..++..+|.....+.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~t----G~~~W~~~~~~~~p~~~~~~~~~~~~-~~~~vv~p~~dG~l~a~~~~~G~~~~~~~   84 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRN----GHIIWSIEPENFQPLIEIQEPSRLET-YETLIIEPFGDGNIYYFNAHQGLQKLPLS   84 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTT----TEEEEEECGGGSCCSEECCCSCTTTS-SEEEEECCSTTTEEEEEETTTEEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCC----CcEEEEecCCccCCcEEecCCccccC-CcEEEEEECCCCEEEEEECCCCcEEeeec
Confidence            35788889999999988877    5555555443 122211110  0112 244444  579999999998885544332


Q ss_pred             CCCcee--EEEec-----------CCCCCEEEEEECCCeEEEEECCCCccceeEeccC--CC-----eEEEEEe---c-C
Q 009380          323 SEYAVF--SLSQQ-----------PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE--AR-----INTIDFN---P-R  378 (536)
Q Consensus       323 ~~~~i~--~l~~~-----------~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~--~~-----i~~i~~~---p-~  378 (536)
                      ....+.  -+...           ..+ ..+++|+.+|.+...|+++|+.+..+....  ..     ..|....   . .
T Consensus        85 ~~~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           85 IRQLVSTSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             HHHHHTTCSEEEECC----------CC-EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             cccceeccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence            111110  01110           022 588999999999999999999988876321  10     0111110   0 1


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccC-cee-----EEEEccCCCeEEEEeCCCcEEEEeCCCCCcce
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKR-AVH-----SAYFSPSGSSLATTSFDDTIGIWSGVNFENTS  450 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~-~v~-----~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~  450 (536)
                      ....++.+..+..+.+.+ +++. .  .......... .+.     +-..+.++.+ ++++.||.|.-+|..++..+.
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~--W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-S--YNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-C--CCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-e--EEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            124677777777777766 4432 1  1111110000 000     0001124665 457889999999988776543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.36  E-value=0.43  Score=46.73  Aligned_cols=148  Identities=11%  Similarity=0.113  Sum_probs=91.2

Q ss_pred             CEEEEEECCCeEEEEECCCCccceeEecc----CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC--------
Q 009380          338 NTLYFGEGQGGLNIWDVRSRKSATEWLLH----EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP--------  405 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~~~~~~~~~~h----~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~--------  405 (536)
                      .-++++-. +.||..++.....-+.+...    -..|..+..+|+| .+||..+ +..|.|..+..+.....        
T Consensus        33 t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~  109 (452)
T 3pbp_A           33 TRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAF  109 (452)
T ss_dssp             TEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred             CEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCccccccccc
Confidence            45555444 47888887754444444432    2367889999988 6777776 56899999984321111        


Q ss_pred             Ccceee-c-----ccCceeEEEEcc---CCCeEEEEeCCCcEEEEeCCCCC-cceEEeccCC----CCceeeeeEEEEcC
Q 009380          406 EPMKVL-S-----HKRAVHSAYFSP---SGSSLATTSFDDTIGIWSGVNFE-NTSMIHHNNQ----TGRWISSFRAIWGW  471 (536)
Q Consensus       406 ~~~~~~-~-----~~~~v~~l~~sp---~g~~l~t~s~dg~I~iwd~~~~~-~~~~~~~~~~----~~~~~~~~~~~~s~  471 (536)
                      .+.... +     ...+|..+.|+|   .+..|++-..|+.|++||+.... ....+.....    ......+..++|+.
T Consensus       110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~  189 (452)
T 3pbp_A          110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK  189 (452)
T ss_dssp             EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred             ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence            011111 1     256799999999   45789999999999999998522 2222321110    00112233478998


Q ss_pred             CCCEEEEEc--CCCcEEEE
Q 009380          472 DDSCVFIGN--MTRTVEVI  488 (536)
Q Consensus       472 ~g~~l~~gs--~dg~I~v~  488 (536)
                      ++-.|++.+  ..|.|+-.
T Consensus       190 ~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          190 DGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             TSSCEEEEECTTSCEEEEE
T ss_pred             CCcEEEEEecCCCCCEEEE
Confidence            887777754  77877654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.19  E-value=0.85  Score=42.91  Aligned_cols=196  Identities=10%  Similarity=0.097  Sum_probs=105.3

Q ss_pred             EecccccCccccccccCCceEEEEEEecCCccEEEEEeCC--------------CcEEEEECCCCCCCCCceEEeccCCC
Q 009380          218 DIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL--------------GNITFWNLDSQQDEDNGIYLFRTHLG  283 (536)
Q Consensus       218 ~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d--------------g~v~iwd~~~~~~~~~~~~~~~~h~~  283 (536)
                      .||.+..+.....+...+.+  --+++  ++.+|.-....              ..|+..+++..    . ...+..  .
T Consensus        38 ~ly~~~~dg~~~~~l~~~~~--~~i~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~----~-~~~l~~--~  106 (302)
T 3s25_A           38 RLYAMNIDGSNIHKLSNDTA--MYINA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH----G-STVLDP--D  106 (302)
T ss_dssp             EEEEEETTSCSCEEEEEEEE--EEEEE--CSSEEEEEEECC------CCSSCCSEEEEEEETTSC----C-CEEEEC--S
T ss_pred             eEEEEcCCCCCCEEccCCce--eeEEE--cCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC----c-ceEeec--C
Confidence            34555444444444444443  45577  88888776543              35666666642    2 222221  1


Q ss_pred             CEEEEEEecCCCCEEEEEE----CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-CCeEEEEECCCCc
Q 009380          284 PISGIVTQQYCLSKIFTSC----YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVRSRK  358 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s----~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~~~~  358 (536)
                      .  +..|++++ +.|+-..    .+..|...++.......+..+..    ..+++++ ..|+..+. ...|.+.++..+.
T Consensus       107 ~--~~~~s~~g-~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          107 P--CIYASLIG-NYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTASQS  178 (302)
T ss_dssp             C--EEEEEEET-TEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEET-TEEEEECTTTCCEEEEETTTTE
T ss_pred             C--ccEEEEeC-CEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEEC-CEEEEEeCCCceEEEEECCCCC
Confidence            2  23678888 7777665    35567777887665555554433    3456677 45554443 6788888887654


Q ss_pred             cceeEeccCCCeEEEEEecCCCCEEEEEeCC-CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC--C
Q 009380          359 SATEWLLHEARINTIDFNPRNPNIMATSSTD-GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF--D  435 (536)
Q Consensus       359 ~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~--d  435 (536)
                      ....+.   +... ..++|++..++.+-..+ ..|..-++....     ...+.  ...+  ..|+|++.+|+-++.  .
T Consensus       179 ~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-----~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~  245 (302)
T 3s25_A          179 EALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-----PVVLT--EANI--EHYNVYGSLIFYQRGGDN  245 (302)
T ss_dssp             EEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-----CEECS--CSCE--EEEEEETTEEEEEECSSS
T ss_pred             EEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-----eEEEe--CCCc--ceEEECCCEEEEEECCCC
Confidence            332222   2222 34668885444444333 356666665532     11111  1222  347888888876532  3


Q ss_pred             CcEEEEeCCC
Q 009380          436 DTIGIWSGVN  445 (536)
Q Consensus       436 g~I~iwd~~~  445 (536)
                      +.|..-++..
T Consensus       246 ~~i~~~~~DG  255 (302)
T 3s25_A          246 PALCVVKNDG  255 (302)
T ss_dssp             CEEEEEETTS
T ss_pred             cEEEEEECCC
Confidence            5566666643

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.19  E-value=1.2  Score=44.61  Aligned_cols=103  Identities=15%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc------CCCCEEEEEEecC---CCCEEEEEEC---
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT------HLGPISGIVTQQY---CLSKIFTSCY---  303 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~---~~~~l~s~s~---  303 (536)
                      ....|+|.|  +|+++++-...+.|++++..++.  ...+..+..      .......|+|+|+   + ..|+.+..   
T Consensus        28 ~P~~~a~~p--dG~l~V~e~~gg~I~~~~~~~g~--~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv~~s~~~  102 (454)
T 1cru_A           28 KPHALLWGP--DNQIWLTERATGKILRVNPESGS--VKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYISGTFKN  102 (454)
T ss_dssp             SEEEEEECT--TSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEEEEEEEC
T ss_pred             CceEEEEcC--CCcEEEEEcCCCEEEEEECCCCc--EeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEEEEeccc
Confidence            457999999  99877775544568888764321  122222221      2456789999995   4 45554432   


Q ss_pred             ----------CCeEEEEECCCC--e---EEEee---c--CCCceeEEEecCCCCCEEEEEE
Q 009380          304 ----------DGLIRLMDAEKE--V---FDLVY---S--SEYAVFSLSQQPNNVNTLYFGE  344 (536)
Q Consensus       304 ----------dg~I~vwd~~~~--~---~~~~~---~--~~~~i~~l~~~~~~~~~l~~g~  344 (536)
                                ...|.-|++...  .   ...++   .  .......|.|.|++ .+.++.+
T Consensus       103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A          103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence                      235666665321  1   11121   1  22457889999998 5555433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.08  E-value=0.44  Score=45.10  Aligned_cols=173  Identities=13%  Similarity=0.055  Sum_probs=84.0

Q ss_pred             eEEEEECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEEC----CC-------eEEEEECCCCccce--eEeccCCC
Q 009380          306 LIRLMDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEG----QG-------GLNIWDVRSRKSAT--EWLLHEAR  369 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~----dg-------~i~i~d~~~~~~~~--~~~~h~~~  369 (536)
                      .+.+||..+.+.......   ...-.+++ ..++ .+++.|+.    ++       .+.+||..+.+-..  .+......
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIV-TQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEE-EECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            478999988876542211   11122222 2333 67777773    11       27788987664321  11111111


Q ss_pred             eEEEEEecCCCCEEEEEeCC-------CcEEEEeCCCCCCCC--CCcceeecccCceeEEEEccCCCeEEEEeC------
Q 009380          370 INTIDFNPRNPNIMATSSTD-------GTACIWDLRSMATDK--PEPMKVLSHKRAVHSAYFSPSGSSLATTSF------  434 (536)
Q Consensus       370 i~~i~~~p~~~~~l~s~s~d-------g~i~iwdl~~~~~~~--~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~------  434 (536)
                       .+++.. ++ .+++.|+.+       ..+.+||+.+.+-..  ..+.....|     +++. .++.+++.|+.      
T Consensus       103 -~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-----~~~~-~~~~iyv~GG~~~~~~~  173 (318)
T 2woz_A          103 -FGLGEV-DD-KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-----NVIS-HNGMIYCLGGKTDDKKC  173 (318)
T ss_dssp             -CEEEEE-TT-EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-----EEEE-ETTEEEEECCEESSSCB
T ss_pred             -cceEEE-CC-EEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-----EEEE-ECCEEEEEcCCCCCCCc
Confidence             222222 24 677777754       247888887642100  011111122     1222 36677777764      


Q ss_pred             CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC-----CcEEEEcCCccc
Q 009380          435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT-----RTVEVISPAQRR  494 (536)
Q Consensus       435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d-----g~I~v~d~~~~~  494 (536)
                      -..+.+||+.+.+-... . ..+..+....  ++ .-++.+++.|+.+     ..+.+||..+.+
T Consensus       174 ~~~~~~yd~~~~~W~~~-~-~~p~~r~~~~--~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          174 TNRVFIYNPKKGDWKDL-A-PMKTPRSMFG--VA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             CCCEEEEETTTTEEEEE-C-CCSSCCBSCE--EE-EETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             cceEEEEcCCCCEEEEC-C-CCCCCcccce--EE-EECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence            23589999876532221 1 1111111111  11 1256677777643     357789987753

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.08  E-value=1.2  Score=43.58  Aligned_cols=189  Identities=14%  Similarity=0.030  Sum_probs=91.7

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC----eEEEEECCCCeEEEeec-
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG----LIRLMDAEKEVFDLVYS-  322 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg----~I~vwd~~~~~~~~~~~-  322 (536)
                      ...|.+|+..| +.+++............. ......|.+|++.|..+..|+.++..|    .|...+-.......+.. 
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~   99 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRP   99 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBC
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcc
Confidence            34677777766 555554321100111111 122456999999984335666666555    44443222222222211 


Q ss_pred             -------------CCCceeEEEecCCC-CCEEEEEECCCeEEEEECCCCccceeEe-------------------ccCCC
Q 009380          323 -------------SEYAVFSLSQQPNN-VNTLYFGEGQGGLNIWDVRSRKSATEWL-------------------LHEAR  369 (536)
Q Consensus       323 -------------~~~~i~~l~~~~~~-~~~l~~g~~dg~i~i~d~~~~~~~~~~~-------------------~h~~~  369 (536)
                                   ....|.++++.|.+ +..+++++..+.|...+-. ++.-..+.                   .....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCc
Confidence                         11257789998743 4677777777766655322 22211111                   01235


Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcc-eee-c--------ccCceeEEEEccC-CCeEEEEeCCCcE
Q 009380          370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM-KVL-S--------HKRAVHSAYFSPS-GSSLATTSFDDTI  438 (536)
Q Consensus       370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~-~~~-~--------~~~~v~~l~~sp~-g~~l~t~s~dg~I  438 (536)
                      |.+|.+.|.++..+..+..++.|...+-. ++. -.... ... .        ....+.++.++|. ...|++++..+ |
T Consensus       179 i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~t-W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l  255 (394)
T 3b7f_A          179 MHSILVDPRDPKHLYIGMSSGGVFESTDA-GTD-WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I  255 (394)
T ss_dssp             EEEEEECTTCTTCEEEEEETBEEEEESST-TSS-CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred             eeEEEECCCCCCEEEEEECCCCEEEECCC-CCC-ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence            78999988543444444434444443211 110 00000 000 0        0135889999985 45666666544 4


Q ss_pred             EEEe
Q 009380          439 GIWS  442 (536)
Q Consensus       439 ~iwd  442 (536)
                      ...+
T Consensus       256 ~~s~  259 (394)
T 3b7f_A          256 YRMD  259 (394)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            4443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.97  E-value=0.069  Score=47.34  Aligned_cols=145  Identities=10%  Similarity=-0.035  Sum_probs=79.8

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCc--------eeEEEecCCCCCEEEEEECCCeEEEEEC
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYA--------VFSLSQQPNNVNTLYFGEGQGGLNIWDV  354 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~--------i~~l~~~~~~~~~l~~g~~dg~i~i~d~  354 (536)
                      ..+..++|+|++ . |+.. .+|.+.-.+..+......+.....        ..++.|.+++ .+.+ + .||.|+-++.
T Consensus        41 ~~~~~laf~P~G-~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYa-v-~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGG-E-LYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYA-V-SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTS-C-EEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEE-E-ETTEEEEESC
T ss_pred             ccceeEEECCCc-c-EEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEE-e-CCCEEEEeCC
Confidence            367799999976 5 5554 788877777655322222222222        4789999998 4444 4 5699988876


Q ss_pred             CCCccc------eeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC-Ccceee--cccCceeEEEEcc
Q 009380          355 RSRKSA------TEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP-EPMKVL--SHKRAVHSAYFSP  424 (536)
Q Consensus       355 ~~~~~~------~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~-~~~~~~--~~~~~v~~l~~sp  424 (536)
                      .+...-      ..+- .-=..+..|.|.|+| .+.+..  |+.++-+...+.....- ......  ..-.....+.|.+
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             CcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            432211      1111 111467999999988 444444  77754433322110000 001111  1222344577898


Q ss_pred             CCCeEEEEeCCCcE
Q 009380          425 SGSSLATTSFDDTI  438 (536)
Q Consensus       425 ~g~~l~t~s~dg~I  438 (536)
                      +|.++++.  ++.+
T Consensus       192 ~G~l~~v~--~g~~  203 (236)
T 1tl2_A          192 VGTLFGVQ--GGKF  203 (236)
T ss_dssp             TSCEEEEE--TTEE
T ss_pred             CCcEEEEe--CCeE
Confidence            88866665  6633

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.79  E-value=1.3  Score=41.63  Aligned_cols=210  Identities=9%  Similarity=0.039  Sum_probs=114.0

Q ss_pred             CccEEEEEe--CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC--------------CeEEEE
Q 009380          247 DVRMVVAGS--KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD--------------GLIRLM  310 (536)
Q Consensus       247 ~~~~l~tg~--~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d--------------g~I~vw  310 (536)
                      ++.+|....  .++.|...+.+.     .....+...    .+--+++++ .+|+-+...              ..|+..
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg-----~~~~~l~~~----~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i   93 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDG-----SNIHKLSND----TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRNSLCRI   93 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTS-----CSCEEEEEE----EEEEEEECS-SEEEEEEECC------CCSSCCSEEEEEE
T ss_pred             eCCEEEEEeCCCCceEEEEcCCC-----CCCEEccCC----ceeeEEEcC-CEEEEEECCCCcccccceeccCCCeEEEE
Confidence            555555543  245555555542     223333221    134567888 777766543              468888


Q ss_pred             ECCCCeEEEeecCCCceeEEEecCCCCCEEEEEE----CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEE
Q 009380          311 DAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE----GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       311 d~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~----~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ++..+....+....    +..|++++ +.|+...    .+..|...++.. .....+..+..    ..|++++..+..+.
T Consensus        94 ~~dg~~~~~l~~~~----~~~~s~~g-~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~  163 (302)
T 3s25_A           94 KRNGHGSTVLDPDP----CIYASLIG-NYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNN  163 (302)
T ss_dssp             ETTSCCCEEEECSC----EEEEEEET-TEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEEC
T ss_pred             eCCCCcceEeecCC----ccEEEEeC-CEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEe
Confidence            88877655544322    23566677 5666655    345666667653 33444543332    45677775555555


Q ss_pred             eCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCC--cEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDD--TIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       387 s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                      .....|.+.++....     ...+..  .... ..++|++.+|+-....+  .|..-++.... ...+..     ..+  
T Consensus       164 ~g~~~Iy~~~l~g~~-----~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~-----~~~--  227 (302)
T 3s25_A          164 PKNGQLYRYDTASQS-----EALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE-----ANI--  227 (302)
T ss_dssp             TTTCCEEEEETTTTE-----EEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC-----SCE--
T ss_pred             CCCceEEEEECCCCC-----EEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC-----CCc--
Confidence            446788888877642     112222  2222 34668888887766443  56666665443 222211     011  


Q ss_pred             eEEEEcCCCCEEEEEc--CCCcEEEEcCCccc
Q 009380          465 FRAIWGWDDSCVFIGN--MTRTVEVISPAQRR  494 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs--~dg~I~v~d~~~~~  494 (536)
                        ..|+|++.+|+-++  ....|..-++....
T Consensus       228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          228 --EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             --EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             --ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence              33677888776542  23567777776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.69  E-value=2.9  Score=44.90  Aligned_cols=227  Identities=10%  Similarity=0.116  Sum_probs=124.2

Q ss_pred             CceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-----cCCCCEEEEEEecCCCCEEEEEECCCeEEE
Q 009380          235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-----THLGPISGIVTQQYCLSKIFTSCYDGLIRL  309 (536)
Q Consensus       235 ~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~dg~I~v  309 (536)
                      ..|.++.. .  ++ .|..|+.+ -|..++..+    . ....+.     .....|.++....++ . |..++.+ -|..
T Consensus       103 ~~i~~i~~-~--~g-~lWigt~~-Gl~~~~~~~----~-~~~~~~~~~~~l~~~~i~~i~~d~~g-~-lWigt~~-Gl~~  169 (758)
T 3ott_A          103 TDVRTMAL-Q--GD-TLWLGALN-GLYTYQLQS----R-KLTSFDTRRNGLPNNTIYSIIRTKDN-Q-IYVGTYN-GLCR  169 (758)
T ss_dssp             SCEEEEEE-E--TT-EEEEEETT-EEEEEETTT----C-CEEEECHHHHCCSCSCEEEEEECTTC-C-EEEEETT-EEEE
T ss_pred             ceEEEEEe-c--CC-cEEEEcCC-cceeEeCCC----C-eEEEeccCCCCcCCCeEEEEEEcCCC-C-EEEEeCC-CHhh
Confidence            45777654 3  55 45556655 577888764    2 222221     123468888777665 4 4445555 4778


Q ss_pred             EECCCCeEEEeecC------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEE
Q 009380          310 MDAEKEVFDLVYSS------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIM  383 (536)
Q Consensus       310 wd~~~~~~~~~~~~------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l  383 (536)
                      ++..++.+......      ...|.++....++ ..|.+|+. +.|..+|..+++...........|.+|....++.  |
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--l  245 (758)
T 3ott_A          170 YIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD--L  245 (758)
T ss_dssp             EETTTTEEEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC--E
T ss_pred             CccCCCceEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC--E
Confidence            89887765433211      1247888877765 56667774 5688899877653221112234588888777663  4


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcceee--------cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPMKVL--------SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN  455 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~~~~--------~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~  455 (536)
                      ..|+.+ -|.+++..+..     .....        -....|.++..+.+|. |..|+..| +.++....  ....+...
T Consensus       246 WigT~~-Gl~~~~~~~~~-----~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~  315 (758)
T 3ott_A          246 LAGTDN-GLYVYHNDTTP-----LQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPIS  315 (758)
T ss_dssp             EEEETT-EEEEECCTTSC-----CEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHH
T ss_pred             EEEeCC-ceeEEecCCCc-----EEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecc
Confidence            444444 48888876532     11111        1234688998888887 55555566 65554321  12222211


Q ss_pred             ----CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          456 ----NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       456 ----~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                          ......+..  +.-..+|. |.+|+.+| +..++..+
T Consensus       316 ~~~~~~~~~~v~~--i~~D~~g~-lWiGt~~G-l~~~~~~~  352 (758)
T 3ott_A          316 QITGTGDGNQFYS--LFRDSKGF-YWFGGANG-LIRFTDPA  352 (758)
T ss_dssp             HHSCSCCCCBEEE--EEECTTCC-EEEEETTE-EEEESCTT
T ss_pred             cCCCCCCCceEEE--EEEcCCCC-EEEeeCCc-ceeecccc
Confidence                111222332  33455554 45555554 66676654

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.68  E-value=0.69  Score=46.87  Aligned_cols=79  Identities=9%  Similarity=0.083  Sum_probs=54.9

Q ss_pred             CCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC----C--C--CCcceeecccCceeEEEEccCCCeEEEEeCCCcE
Q 009380          367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT----D--K--PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       367 ~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~----~--~--~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                      ......+.++|||.+++++|-.+.++.++|+++...    .  .  ..+.....-.....+.+|+++|+...+.-.|..|
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqv  401 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQV  401 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceE
Confidence            344567899999977777777899999999985310    0  0  0111122345667889999999655555689999


Q ss_pred             EEEeCCC
Q 009380          439 GIWSGVN  445 (536)
Q Consensus       439 ~iwd~~~  445 (536)
                      .-|++..
T Consensus       402 vkWni~~  408 (638)
T 3sbq_A          402 VKWNMEE  408 (638)
T ss_dssp             EEEEHHH
T ss_pred             EEEeccH
Confidence            9999863

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.48  E-value=0.61  Score=52.74  Aligned_cols=219  Identities=11%  Similarity=0.147  Sum_probs=126.3

Q ss_pred             cceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC----CCCEEEEE
Q 009380          214 GSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH----LGPISGIV  289 (536)
Q Consensus       214 dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~  289 (536)
                      ...+.++++..+........+..|.-=.|-.  + +.|+-.+ +..|.-|++...   ..++..|..|    ...|..-.
T Consensus        85 g~~lQiFnl~~k~klks~~~~e~VvfWkWis--~-~~l~lVT-~~aVyHW~~~~~---s~P~k~fdR~~~L~~~QIinY~  157 (1630)
T 1xi4_A           85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--L-NTVALVT-DNAVYHWSMEGE---SQPVKMFDRHSSLAGCQIINYR  157 (1630)
T ss_pred             CCeEEEeehHHhhhhcccccCCCceEEEecC--C-CeeEEEc-CCeEEEeccCCC---CccHHHHhcchhcccCeeEEee
Confidence            5689999987665544444567777777764  3 3344333 347999999752   3455555544    34566677


Q ss_pred             EecCCCCEEEEEE-------CCCeEEEEECCCCeEEEeecCCCceeEEEec--CCCCCEEEEEEC---CCeEEEEECCCC
Q 009380          290 TQQYCLSKIFTSC-------YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQ--PNNVNTLYFGEG---QGGLNIWDVRSR  357 (536)
Q Consensus       290 ~~~~~~~~l~s~s-------~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~--~~~~~~l~~g~~---dg~i~i~d~~~~  357 (536)
                      .+++. ++++..|       -.|.+.+|+.+.+....+.+|......+...  +...++++.+..   .+.++|.++...
T Consensus       158 ~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~  236 (1630)
T 1xi4_A          158 TDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP  236 (1630)
T ss_pred             eCCCC-CeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCC
Confidence            77777 5555333       3589999999988877777776555444442  222234444433   268999998543


Q ss_pred             ---ccc------eeEec---cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC
Q 009380          358 ---KSA------TEWLL---HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS  425 (536)
Q Consensus       358 ---~~~------~~~~~---h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~  425 (536)
                         ...      ..+..   ..+-..++..++.. .++..-+.-|.|.+||+.++..    +....-....|...+.+..
T Consensus       237 ~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~----i~~~ris~~~iF~~~~~~~  311 (1630)
T 1xi4_A          237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTC----IYMNRISGETIFVTAPHEA  311 (1630)
T ss_pred             ccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchh----hhhccccCCceEEeccCCC
Confidence               111      11111   12333456667655 3666677789999999999752    2222223334433333332


Q ss_pred             CCeEEEEeCCCcEEEEeCCC
Q 009380          426 GSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       426 g~~l~t~s~dg~I~iwd~~~  445 (536)
                      ..=+++....|.|.-..+..
T Consensus       312 ~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          312 TAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             CCceEEEcCCceEEEEEEcc
Confidence            22344444566555554443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.31  E-value=2.1  Score=40.97  Aligned_cols=235  Identities=11%  Similarity=0.006  Sum_probs=119.8

Q ss_pred             ccceeeeecCCCCcccccccccccccccccccceEEecccccCccc-------cccccCCceEEEEEEec--CCccEEEE
Q 009380          183 FNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-------IARIMPGRITQMKFLPC--SDVRMVVA  253 (536)
Q Consensus       183 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-------~~~~~~~~I~~v~~~p~--~~~~~l~t  253 (536)
                      .+.-+.+.|.|+|++++...          ..|.|.+++.......       +...-.+....|+|+|.  .++.+.++
T Consensus        31 L~~P~~ia~~pdG~llVter----------~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSR----------DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY  100 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEET----------TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEe----------cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence            45567889999999887542          2455555543211111       11122567899999982  12444443


Q ss_pred             E--eCCCcEEEEECCCCC----C--CCCceE-Eec-cCCCCEEEEEEecCCCCEEEEEEC-------------CCeEEEE
Q 009380          254 G--SKLGNITFWNLDSQQ----D--EDNGIY-LFR-THLGPISGIVTQQYCLSKIFTSCY-------------DGLIRLM  310 (536)
Q Consensus       254 g--~~dg~v~iwd~~~~~----~--~~~~~~-~~~-~h~~~V~~l~~~~~~~~~l~s~s~-------------dg~I~vw  310 (536)
                      -  ..++.|.-|.+....    .  ..+.+. .+. .....-..|.|.|++ .++++.+.             -|.|.-.
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi  179 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRM  179 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEE
Confidence            2  234556666665421    0  011111 121 111234579999998 77666542             3555555


Q ss_pred             ECCCC---------eEEEeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCc------------------ccee
Q 009380          311 DAEKE---------VFDLVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRK------------------SATE  362 (536)
Q Consensus       311 d~~~~---------~~~~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~------------------~~~~  362 (536)
                      +....         ..+..+++ .....++|+|++ .++++-. .++.=.|.-+..+.                  ++..
T Consensus       180 ~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          180 TPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             CTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             eCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence            65432         11222233 456789999976 4444321 22212222222221                  1233


Q ss_pred             EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee-cccCceeEEEEccCCCeEEEEe
Q 009380          363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL-SHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       363 ~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                      +..+......|+|.. + .+++..-..+.|....+....... ....+. +....+..|...|+|.++++..
T Consensus       258 ~~~~~~ap~G~~~~~-g-~~~~~~l~~~~l~~v~~~~~~~~~-~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          258 WSTDEASPSGIAYAE-G-SVWMAGLRGERLWRIPLKGTAAAA-DPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             ECTTTCCEEEEEEET-T-EEEEEESTTCSEEEEEEETTEESS-CCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCCCCCCcceEEEc-C-ceeeccccCCEEEEEEecCCceec-ceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            332224567788874 4 566665556667666665432100 111222 3346789999999997666544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.25  E-value=0.71  Score=44.40  Aligned_cols=140  Identities=7%  Similarity=-0.052  Sum_probs=65.3

Q ss_pred             CeEEEEECCCCeEEEeecCC--Cce-eEEEecCCCCCEEEEEEC------CCeEEEEEC--CCCcc--ceeEeccCCCe-
Q 009380          305 GLIRLMDAEKEVFDLVYSSE--YAV-FSLSQQPNNVNTLYFGEG------QGGLNIWDV--RSRKS--ATEWLLHEARI-  370 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~~~~--~~i-~~l~~~~~~~~~l~~g~~------dg~i~i~d~--~~~~~--~~~~~~h~~~i-  370 (536)
                      ..+.+||+.+.....+....  ... .+++.. ++ .+++.|+.      ...+.+||+  .+.+-  +..+....... 
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GD-KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TT-EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CC-EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence            57899999988766554322  111 233333 33 56666653      245777887  43321  11111111111 


Q ss_pred             EEEEEecCCCCEEEEEeCC----------------------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380          371 NTIDFNPRNPNIMATSSTD----------------------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS  428 (536)
Q Consensus       371 ~~i~~~p~~~~~l~s~s~d----------------------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~  428 (536)
                      .++... ++ .+++.|+.+                      ..+.+||+.+.+-  ..+-..........+  ...++++
T Consensus       246 ~~~~~~-~~-~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~--~~~~~~i  319 (357)
T 2uvk_A          246 GFAGIS-ND-SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW--DKSGELSQGRAYGVS--LPWNNSL  319 (357)
T ss_dssp             CEEEEE-TT-EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C--EEEEECSSCCBSSEE--EEETTEE
T ss_pred             ceEEEE-CC-EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce--eeCCCCCCCccccee--EEeCCEE
Confidence            122333 23 577777632                      2577899887431  111111111111122  2336778


Q ss_pred             EEEEeCCC------cEEEEeCCCCCcceEE
Q 009380          429 LATTSFDD------TIGIWSGVNFENTSMI  452 (536)
Q Consensus       429 l~t~s~dg------~I~iwd~~~~~~~~~~  452 (536)
                      ++.|+.++      .|.++++++.+.....
T Consensus       320 ~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          320 LIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             EEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            88888653      3556677766554443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.99  E-value=2.7  Score=40.39  Aligned_cols=145  Identities=8%  Similarity=0.037  Sum_probs=79.2

Q ss_pred             CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-------ecCCCceeEEEecCC---CCCEEEEEE-C------
Q 009380          283 GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-------YSSEYAVFSLSQQPN---NVNTLYFGE-G------  345 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-------~~~~~~i~~l~~~~~---~~~~l~~g~-~------  345 (536)
                      .....|+|.|++ ..|+.+...|.|++++........+       .........|+++|+   + ..|++.. .      
T Consensus        18 ~~P~~i~~~pdG-~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~-g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDN-HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQS-RRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTT-CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHH-CEEEEEEEEECSSSC
T ss_pred             CCcEEEEEcCCC-CEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCC-CEEEEEEeCCCCCCC
Confidence            456799999998 6355666789999998643211111       112346789999996   4 3555543 2      


Q ss_pred             -CCeEEEEECCCCc--c--ceeE-ec------cCCCeEEEEEecCCCCEEEEEeC-------------CCcEEEEeCCCC
Q 009380          346 -QGGLNIWDVRSRK--S--ATEW-LL------HEARINTIDFNPRNPNIMATSST-------------DGTACIWDLRSM  400 (536)
Q Consensus       346 -dg~i~i~d~~~~~--~--~~~~-~~------h~~~i~~i~~~p~~~~~l~s~s~-------------dg~i~iwdl~~~  400 (536)
                       ...|..|++....  .  ...+ ..      .......|.|.|+| .++++.+.             .|.|.-+|....
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence             2357777765331  1  1111 11      11224679999988 45554432             245666665431


Q ss_pred             CCC-C--------CCcceeecccCceeEEEEcc-CCCeEEE
Q 009380          401 ATD-K--------PEPMKVLSHKRAVHSAYFSP-SGSSLAT  431 (536)
Q Consensus       401 ~~~-~--------~~~~~~~~~~~~v~~l~~sp-~g~~l~t  431 (536)
                      -.. .        ...+...++ .....++|+| +|.++++
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            000 0        011111234 3467899999 6655444

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=94.73  E-value=3.4  Score=40.27  Aligned_cols=160  Identities=13%  Similarity=0.116  Sum_probs=82.7

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCC--cEEEEECCCCCCCCCceEE---ecc--------CCCCEEEEEEecCC-CCEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLG--NITFWNLDSQQDEDNGIYL---FRT--------HLGPISGIVTQQYC-LSKIF  299 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg--~v~iwd~~~~~~~~~~~~~---~~~--------h~~~V~~l~~~~~~-~~~l~  299 (536)
                      ...|.+|++.|...+.+++ ++..|  .-.||...+.......+..   +..        +...|.+|++.|.+ +..|+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            4579999999853444444 44444  1134433332111111110   111        12357889998742 36777


Q ss_pred             EEECCCeEEEEECCCCeEEEeec-------------------CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc
Q 009380          300 TSCYDGLIRLMDAEKEVFDLVYS-------------------SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA  360 (536)
Q Consensus       300 s~s~dg~I~vwd~~~~~~~~~~~-------------------~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~  360 (536)
                      .+...+.|...+-.......+..                   ....+.+|.+.|.+++.|+++..++.|...+- .++.-
T Consensus       133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW  211 (394)
T 3b7f_A          133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDW  211 (394)
T ss_dssp             EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSC
T ss_pred             EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCc
Confidence            77767766555433333333221                   12357889998855456777766665554432 22222


Q ss_pred             eeEec-----c--------CCCeEEEEEecCCCCEEEEEeCCCcEEEEe
Q 009380          361 TEWLL-----H--------EARINTIDFNPRNPNIMATSSTDGTACIWD  396 (536)
Q Consensus       361 ~~~~~-----h--------~~~i~~i~~~p~~~~~l~s~s~dg~i~iwd  396 (536)
                      ..+..     +        ...+.+|.++|.++..|..+...+ |...+
T Consensus       212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~  259 (394)
T 3b7f_A          212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD  259 (394)
T ss_dssp             EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE
T ss_pred             eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC
Confidence            22110     0        124889999997556777776544 54443

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.42  E-value=2.2  Score=42.70  Aligned_cols=110  Identities=12%  Similarity=0.145  Sum_probs=64.0

Q ss_pred             eEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---------CCCceeEEEecCC---CCCEEEE
Q 009380          275 IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---------SEYAVFSLSQQPN---NVNTLYF  342 (536)
Q Consensus       275 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---------~~~~i~~l~~~~~---~~~~l~~  342 (536)
                      +..+...-...+.|+|.|++ .++++-...+.|++++..++....+..         ....+..|+|+|+   + ..|++
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-g~lYv   96 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNN-PYIYI   96 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTS-CEEEE
T ss_pred             EEEEECCCCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcC-CEEEE
Confidence            33333334457799999998 766654444579888876554433221         2456779999995   4 45555


Q ss_pred             EEC-------------CCeEEEEECCCCc-------cce-eEe-ccCCCeEEEEEecCCCCEEEEEe
Q 009380          343 GEG-------------QGGLNIWDVRSRK-------SAT-EWL-LHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       343 g~~-------------dg~i~i~d~~~~~-------~~~-~~~-~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      ...             ...|..|++....       .+. .+. ........|.|.|+| +++++.+
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~G  162 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIG  162 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEEC
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEEC
Confidence            542             2356666654321       111 121 122357899999998 4555443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.23  E-value=4  Score=39.03  Aligned_cols=201  Identities=11%  Similarity=0.066  Sum_probs=105.3

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe----ccCCCCEEEEEEecC---CCCEEEEE-E--CCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF----RTHLGPISGIVTQQY---CLSKIFTS-C--YDG  305 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~----~~h~~~V~~l~~~~~---~~~~l~s~-s--~dg  305 (536)
                      .-..|+|.|  +|.++++--..|.|++++.....  ...+..+    .........|+|+|+   + ..|+.+ +  .++
T Consensus        33 ~P~~ia~~p--dG~llVter~~G~I~~v~~~~g~--~~~v~~~~~v~~~g~~GllGia~~Pdf~~~-g~lYv~yt~~~~~  107 (347)
T 3das_A           33 SPWGLAPLP--GGDLLVSSRDEATITRVDAKTGR--KTELGEVPGVSPSGEGGLLGIALSPDYASD-HMVYAYFTSASDN  107 (347)
T ss_dssp             SEEEEEECT--TSCEEEEETTTCEEEEECTTTCC--EEEEEECTTCCCBTTBSEEEEEECTTHHHH-CEEEEEEECSSSE
T ss_pred             CceEEEEcC--CCcEEEEEecCCEEEEEECCCCc--EeeecccCceeecCCCCceeeEeccccccC-CEEEEEEecCCCC
Confidence            467999999  99887777668999998765321  1112212    123456889999995   3 455443 2  455


Q ss_pred             eEEEEECCCC--------eEEEee-----cCCCceeEEEecCCCCCEEEEEEC-------------CCeEEEEECCCC--
Q 009380          306 LIRLMDAEKE--------VFDLVY-----SSEYAVFSLSQQPNNVNTLYFGEG-------------QGGLNIWDVRSR--  357 (536)
Q Consensus       306 ~I~vwd~~~~--------~~~~~~-----~~~~~i~~l~~~~~~~~~l~~g~~-------------dg~i~i~d~~~~--  357 (536)
                      .|.-|.+..+        ....++     ........|.|.|++ .++++.+.             .|.|.-++....  
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            6666766541        111111     112345679999998 55554332             356666665422  


Q ss_pred             --c---cceeEe-ccCCCeEEEEEecCCCCEEEEE-eCCCcEEEEeCCCCCCC-------------CCCcceeeccc-Cc
Q 009380          358 --K---SATEWL-LHEARINTIDFNPRNPNIMATS-STDGTACIWDLRSMATD-------------KPEPMKVLSHK-RA  416 (536)
Q Consensus       358 --~---~~~~~~-~h~~~i~~i~~~p~~~~~l~s~-s~dg~i~iwdl~~~~~~-------------~~~~~~~~~~~-~~  416 (536)
                        .   ....+. +|. ....++|+|++ .++++= +.|+.-.|--+..+..-             ...+.....+. ..
T Consensus       187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             TTCSSTTCCEEEBCCS-BCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             CCCCCCCCeEEeeCCC-CcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence              0   111222 343 35679999976 444432 23332233333332210             01122222222 35


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                      ...++|. +|..++..-..+.|....+..
T Consensus       265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~  292 (347)
T 3das_A          265 PSGIAYA-EGSVWMAGLRGERLWRIPLKG  292 (347)
T ss_dssp             EEEEEEE-TTEEEEEESTTCSEEEEEEET
T ss_pred             CcceEEE-cCceeeccccCCEEEEEEecC
Confidence            6677776 455555544555666665544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.20  E-value=0.95  Score=48.19  Aligned_cols=194  Identities=11%  Similarity=0.134  Sum_probs=100.5

Q ss_pred             CEEEEEECC----CeEEEEECCCCeEEEee-c-------CCCceeEEEecC-CCCCEEEEEECC------CeEEEEECCC
Q 009380          296 SKIFTSCYD----GLIRLMDAEKEVFDLVY-S-------SEYAVFSLSQQP-NNVNTLYFGEGQ------GGLNIWDVRS  356 (536)
Q Consensus       296 ~~l~s~s~d----g~I~vwd~~~~~~~~~~-~-------~~~~i~~l~~~~-~~~~~l~~g~~d------g~i~i~d~~~  356 (536)
                      .+++.|+.+    ..+.+||..+.....+. .       ....-.+++..+ ++ .+++.|+.+      ..+.+||+.+
T Consensus       399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd~~t  477 (695)
T 2zwa_A          399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFDMKT  477 (695)
T ss_dssp             CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEETTT
T ss_pred             EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEeCCC
Confidence            677777753    46889999888766554 2       111122333333 44 577777654      3588899887


Q ss_pred             Cccce--eEeccCCCeEEEEEecCCCCEEEEEeCCC--cEEEEeCCCCCCCCCCcc-eeecccCceeEEEEccC-CCeEE
Q 009380          357 RKSAT--EWLLHEARINTIDFNPRNPNIMATSSTDG--TACIWDLRSMATDKPEPM-KVLSHKRAVHSAYFSPS-GSSLA  430 (536)
Q Consensus       357 ~~~~~--~~~~h~~~i~~i~~~p~~~~~l~s~s~dg--~i~iwdl~~~~~~~~~~~-~~~~~~~~v~~l~~sp~-g~~l~  430 (536)
                      .+-..  .+...... .+++...++ .+++.|+.++  .+.+||+.+..-...... ..........++.+..+ +.+++
T Consensus       478 ~~W~~~~~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          478 REWSMIKSLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TEEEECCCCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CcEEECCCCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            54221  11111111 223332234 6888887654  689999887431100000 01111222233555654 66777


Q ss_pred             EEeC--C-----CcEEEEeCCCCCc-----ceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC--------CcEEEEcC
Q 009380          431 TTSF--D-----DTIGIWSGVNFEN-----TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT--------RTVEVISP  490 (536)
Q Consensus       431 t~s~--d-----g~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d--------g~I~v~d~  490 (536)
                      .|+.  +     +.+.+||+.+..-     -..+.......+.-..  ++...++.+++.|+.+        ..|.+||.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ--IKYITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE--EEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce--EEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            7765  2     3588999877652     1112111111111111  2222236777777743        45999999


Q ss_pred             Cccc
Q 009380          491 AQRR  494 (536)
Q Consensus       491 ~~~~  494 (536)
                      .+.+
T Consensus       634 ~t~~  637 (695)
T 2zwa_A          634 LSET  637 (695)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            8764

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=93.24  E-value=11  Score=40.69  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=84.2

Q ss_pred             CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-------CCceeEEEecCCCCCEEEEEECCCe----EE
Q 009380          282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-------EYAVFSLSQQPNNVNTLYFGEGQGG----LN  350 (536)
Q Consensus       282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~~~~~l~~g~~dg~----i~  350 (536)
                      .+.|.+|.++|..+..++.+...+.|...+=.......+...       ...+.+|++.|.+++.++++.....    -.
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            468999999998778888888878776665444445444332       2469999999876567777664311    23


Q ss_pred             EEECC-CCccceeEec---------cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC-CCCCCCCccee---ecccCc
Q 009380          351 IWDVR-SRKSATEWLL---------HEARINTIDFNPRNPNIMATSSTDGTACIWDLRS-MATDKPEPMKV---LSHKRA  416 (536)
Q Consensus       351 i~d~~-~~~~~~~~~~---------h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~-~~~~~~~~~~~---~~~~~~  416 (536)
                      ||-.. .++.-..+..         ....+..|+++|.++..+..+...+.|  |--.. ++. -......   ......
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~T-W~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKT-WTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSS-CEEETTSCCCCSTTTC
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcc-cCCCccCccccCCCCC
Confidence            33322 3332111111         011356788888665677777644443  32222 210 0000000   011245


Q ss_pred             eeEEEEcc-CCCeEEEEeCC
Q 009380          417 VHSAYFSP-SGSSLATTSFD  435 (536)
Q Consensus       417 v~~l~~sp-~g~~l~t~s~d  435 (536)
                      +..+.++| ++..++++..+
T Consensus       171 ~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEEECTTSTTCEEEEESS
T ss_pred             eEEEEECCCCCCEEEEEEcC
Confidence            78899998 44566666654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.36  E-value=1.6  Score=46.39  Aligned_cols=149  Identities=11%  Similarity=0.131  Sum_probs=79.9

Q ss_pred             CccEEEEEeCC------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC--eEEEEECCCCeEE
Q 009380          247 DVRMVVAGSKL------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG--LIRLMDAEKEVFD  318 (536)
Q Consensus       247 ~~~~l~tg~~d------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg--~I~vwd~~~~~~~  318 (536)
                      ++.+++.|+.+      ..+.+||..+..  ...+..+...... .+++...++ .+++.|+.++  .+.+||+.+....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~--W~~~~~~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~  526 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTRE--WSMIKSLSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFK  526 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTE--EEECCCCSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCc--EEECCCCCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceE
Confidence            45677777654      357788887532  1111111111111 122232355 7888887655  6999999998776


Q ss_pred             Eeec------CCCceeEEEecCCCCCEEEEEEC--C-----CeEEEEECCCCcc-----ceeEec---cCCCeEEEEEec
Q 009380          319 LVYS------SEYAVFSLSQQPNNVNTLYFGEG--Q-----GGLNIWDVRSRKS-----ATEWLL---HEARINTIDFNP  377 (536)
Q Consensus       319 ~~~~------~~~~i~~l~~~~~~~~~l~~g~~--d-----g~i~i~d~~~~~~-----~~~~~~---h~~~i~~i~~~p  377 (536)
                      .+..      ......++.+......+++.|+.  +     ..+.+||+.+...     -..+..   ....-.+++...
T Consensus       527 ~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~  606 (695)
T 2zwa_A          527 DVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT  606 (695)
T ss_dssp             ECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE
T ss_pred             EccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC
Confidence            5542      11222335555542357777765  2     4689999988762     111111   111112233333


Q ss_pred             CCCCEEEEEeC--------CCcEEEEeCCCC
Q 009380          378 RNPNIMATSST--------DGTACIWDLRSM  400 (536)
Q Consensus       378 ~~~~~l~s~s~--------dg~i~iwdl~~~  400 (536)
                      ++ .+++.|+.        ...|.+||+.+.
T Consensus       607 ~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          607 PR-KLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             TT-EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CC-EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            23 67777774        345889998874

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.91  E-value=12  Score=34.50  Aligned_cols=185  Identities=12%  Similarity=0.114  Sum_probs=103.1

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECC
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE  313 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~  313 (536)
                      ...|..|+...  .. .++. . ||.|..|-.......+.+    ..-...|..|+....   ..+.-. ||.|..|-..
T Consensus        62 ~~~i~~ia~G~--~h-s~~l-~-~G~v~~wG~n~~Gqlg~P----~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n  128 (282)
T 3qhy_B           62 QSGVDAIAAGN--YH-SLAL-K-DGEVIAWGGNEDGQTTVP----AEARSGVDAIAAGAW---ASYALK-DGKVIAWGDD  128 (282)
T ss_dssp             GSCCCEEEECS--SE-EEEE-E-TTEEEEEECCTTSTTCCC----GGGSSSEEEEEEETT---EEEEEE-TTEEEEEECC
T ss_pred             CCCEEEEEeCC--CE-EEEE-E-CCEEEEeeCCCCCCCCCC----cccCCCeEEEECcCC---EEEEEe-CCeEEEecCC
Confidence            34677777754  32 3333 4 899999987653211111    111346888877654   344445 9999999865


Q ss_pred             C-CeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE
Q 009380          314 K-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTA  392 (536)
Q Consensus       314 ~-~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i  392 (536)
                      . +++-........|..++.....  .++ -. ||.|+.|-......+..-......|..|+.-..  +.++.  .||.|
T Consensus       129 ~~gqlg~~~~~~~~i~~i~~G~~~--~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~--hs~al--~~G~v  200 (282)
T 3qhy_B          129 SDGQTTVPAEAQSGVTALDGGVYT--ALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIF--HSLAL--KDGKV  200 (282)
T ss_dssp             TTSTTSCCGGGGSSEEEEEECSSE--EEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEE--ETTEE
T ss_pred             CCCcCCCCccCCCCeEEEEcccCE--EEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCC--EEEEE--ECCeE
Confidence            4 2221112233567777765432  333 34 799999976653332211122456777877642  34444  59999


Q ss_pred             EEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          393 CIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       393 ~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      +.|=........ .+.   .....|..|+...... ++. . ||.|..|=....
T Consensus       201 ~~wG~n~~gqlg-~p~---~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          201 IAWGDNRYKQTT-VPT---EALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSRT  247 (282)
T ss_dssp             EEEECCTTSTTC-CCG---GGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTCC
T ss_pred             EEEECCCCCCCC-CCc---ccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCCC
Confidence            999765432111 111   1224577777654332 333 3 999999976543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.89  E-value=4.4  Score=41.14  Aligned_cols=101  Identities=9%  Similarity=0.071  Sum_probs=65.4

Q ss_pred             cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCC---------cceEEeccCCCCc
Q 009380          391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFE---------NTSMIHHNNQTGR  460 (536)
Q Consensus       391 ~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~---------~~~~~~~~~~~~~  460 (536)
                      .|.+.|.+..............-......+.++|||+++++++ .+.++.++|+....         +...+......+ 
T Consensus       299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-  377 (638)
T 3sbq_A          299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-  377 (638)
T ss_dssp             CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-
T ss_pred             CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-
Confidence            4788888762110113444445667778899999999988877 57889999987421         111111111122 


Q ss_pred             eeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       461 ~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                       +..+..+|.++|....+-.-|..|.-|++...
T Consensus       378 -lGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          378 -LGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             -SCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             -CcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence             23445779999966666678999999998654

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=85.21  E-value=28  Score=33.57  Aligned_cols=141  Identities=9%  Similarity=0.149  Sum_probs=77.1

Q ss_pred             eEEEEECCCC--ccceeEec------cCCCeEEEEEe---cC---CCCEEEEE-eCCCcEEEEeCCCCCCCC-------C
Q 009380          348 GLNIWDVRSR--KSATEWLL------HEARINTIDFN---PR---NPNIMATS-STDGTACIWDLRSMATDK-------P  405 (536)
Q Consensus       348 ~i~i~d~~~~--~~~~~~~~------h~~~i~~i~~~---p~---~~~~l~s~-s~dg~i~iwdl~~~~~~~-------~  405 (536)
                      .|.+||+.+.  +.++++..      ....+..+.+.   |.   +..++..+ +..+.|.|+|+.+++.-.       +
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            6777888887  77666552      13457788877   22   12343333 346789999999864210       0


Q ss_pred             Cc---ceeecc----cCceeEEEEccC----CCeEEEEeCCCcEEEEeCC-----CC---CcceEEeccCCCCceeeeeE
Q 009380          406 EP---MKVLSH----KRAVHSAYFSPS----GSSLATTSFDDTIGIWSGV-----NF---ENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       406 ~~---~~~~~~----~~~v~~l~~sp~----g~~l~t~s~dg~I~iwd~~-----~~---~~~~~~~~~~~~~~~~~~~~  466 (536)
                      ..   ....+.    ...|..|+++|+    ++.|+-....+ -++|.+.     +.   ..+..+........   ...
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~---~~~  279 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYND---AIA  279 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCC---EEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCC---cce
Confidence            00   000111    247889999997    67777666554 2333322     22   12222222111111   111


Q ss_pred             EEEc-CCCCEEEEEcCCCcEEEEcCCc
Q 009380          467 AIWG-WDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       467 ~~~s-~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      .+.+ .+|.++++--..+.|..|+..+
T Consensus       280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          280 LAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            3454 5676677767778899999875

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=82.08  E-value=59  Score=34.89  Aligned_cols=149  Identities=15%  Similarity=0.191  Sum_probs=79.1

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc-------CCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT-------HLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~-------h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      .+.|.+|+++|. +...+.+++..+.|...+  +.   +..-..+..       ....|.+|++.|..++.++.+..+..
T Consensus        14 ~g~i~~i~~~p~-~~~~~~a~~~~ggv~rS~--Dg---G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~   87 (789)
T 1sqj_A           14 GGYITGIVAHPK-TKDLLYARTDIGGAYRWD--AG---TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV   87 (789)
T ss_dssp             CSCEEEEEECSS-STTCEEEEESSSCEEEEE--TT---TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT
T ss_pred             CCcEEEEEECCC-CCCEEEEEecCCCEEEec--CC---CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccC
Confidence            468999999995 335566666667655443  21   221112221       12469999999865456666553311


Q ss_pred             ----EEEE-ECCCCe-EEEeec---C------CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe------c
Q 009380          307 ----IRLM-DAEKEV-FDLVYS---S------EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL------L  365 (536)
Q Consensus       307 ----I~vw-d~~~~~-~~~~~~---~------~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~------~  365 (536)
                          -.|| ..+.++ ...+..   .      ...+..++++|.+++.++++...+.|.. ....++.-..+.      .
T Consensus        88 ~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~  166 (789)
T 1sqj_A           88 GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFT  166 (789)
T ss_dssp             TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCS
T ss_pred             CCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccC
Confidence                2233 333332 222211   0      1135678888876677888775544332 222233222221      1


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCC
Q 009380          366 HEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      ....+..|.++|.++..++.+..+
T Consensus       167 ~~~~~~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          167 NGIGYTSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             TTTCEEEEEECTTSTTCEEEEESS
T ss_pred             CCCCeEEEEECCCCCCEEEEEEcC
Confidence            124578899998665556556544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	536
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-09
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.8 bits (164), Expect = 5e-13
 Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 34/218 (15%)

Query: 225 KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGP 284
               +      R       P  D  ++ + S    +  W + +++         R H   
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC----KAELREHRHV 187

Query: 285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGE 344
           +  I           +       +                               L  G 
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSG-----------------------KPGPFLLSGS 224

Query: 345 GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK 404
               + +WDV +       + H+  +  + F+      + + + D T  +WD ++     
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG-KFILSCADDKTLRVWDYKNK---- 279

Query: 405 PEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
              MK L+ H+  V S  F  +   + T S D T+ +W
Sbjct: 280 -RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 38/287 (13%), Positives = 84/287 (29%), Gaps = 31/287 (10%)

Query: 263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS 322
           W     +      Y    H  P++ ++      S + ++  D  I++ D E   F+    
Sbjct: 3   WIPRPPE-----KYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLK 56

Query: 323 S-EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN 381
               +V  +S   +                            +       +      N +
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMT--IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 114

Query: 382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
            + ++S D T  +W++++             H+  V     +  G+ +A+ S D T+ +W
Sbjct: 115 HIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170

Query: 442 SGVNFENTSMIHHNNQTGRWIS---------------SFRAIWGWDDSCVFIGNMTRTVE 486
                E  + +  +      IS               S     G     +  G+  +T++
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230

Query: 487 VISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
           +   +    + TL           FH+       +        + VW
Sbjct: 231 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF---ILSCADDKTLRVW 274

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (122), Expect = 9e-08
 Identities = 39/314 (12%), Positives = 94/314 (29%), Gaps = 77/314 (24%)

Query: 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC 294
             +T++ F P     ++V+ S+   I  W+ ++           + H   +  I      
Sbjct: 18  SPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHSG 71

Query: 295 L-----------------------------------------SKIFTSCYDGLIRLMDAE 313
                                                       I ++  D  I++ + +
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 314 KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI 373
                  ++       + +   +   +        + +W V +++   E   H   +  I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 374 DFNP-------------------RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-H 413
            + P                   +    + + S D T  +WD+ +        +  L  H
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST-----GMCLMTLVGH 246

Query: 414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDD 473
              V    F   G  + + + D T+ +W   +++N   +   N    +++S    +    
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVW---DYKNKRCMKTLNAHEHFVTSLD--FHKTA 301

Query: 474 SCVFIGNMTRTVEV 487
             V  G++ +TV+V
Sbjct: 302 PYVVTGSVDQTVKV 315

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 15/168 (8%), Positives = 41/168 (24%), Gaps = 7/168 (4%)

Query: 370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSS 428
           I+   +N      +A    +    I++      +K   +  L  H   V    ++P  + 
Sbjct: 10  ISCHAWNKDR-TQIAICPNNHEVHIYEKS---GNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 429 LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           + T   D    +W+         +              A      +      +       
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 489 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536
                     ++ P  S +          +          +  ++++ 
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD--FKCRIFSAY 171

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 24/160 (15%), Positives = 43/160 (26%), Gaps = 10/160 (6%)

Query: 244 PCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303
             ++   V   S    +   + D +             L             S +  + +
Sbjct: 209 FSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV------TFITESSLVAAGH 262

Query: 304 DGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW 363
           D    L   +     L +     V   S Q        F       +     +   A   
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLD 321

Query: 364 LLHEARINTIDFNP---RNPNIMATSSTDGTACIWDLRSM 400
            LH+  ++ I          +   T+  DG   IWD+RS+
Sbjct: 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 4e-06
 Identities = 22/158 (13%), Positives = 45/158 (28%), Gaps = 6/158 (3%)

Query: 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL--HEARINTIDFNPRNPNIM 383
            +   +   +    +        ++I++    K      L  H  ++  +D+ P + N +
Sbjct: 9   PISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRI 66

Query: 384 ATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG 443
            T  TD  A +W L+         +      RA     ++P+    A  S    I I   
Sbjct: 67  VTCGTDRNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481
               +  +  H  +  R                     
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 35/255 (13%), Positives = 67/255 (26%), Gaps = 16/255 (6%)

Query: 296 SKIFTSCYDGLIRLMDAEKEVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLNIW 352
           ++I     +  + + +     +  V+        V  +   P++ N +          +W
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVW 78

Query: 353 DVRSRK-SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411
            ++ R    T  +L   R         N    A  S      I                 
Sbjct: 79  TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 138

Query: 412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG-----VNFENTSMIHHNNQTGRWISSFR 466
             +  V S  + P+   LA  S D    I+S            +        G  +    
Sbjct: 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198

Query: 467 AIWGWDDSCVFIGNMTRTV-----EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL 521
           +  GW     F  N +R         +  A       + +     +P        +  +L
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE-SSL 257

Query: 522 AGATGGGQVYVWTSD 536
             A       ++T D
Sbjct: 258 VAAGHDCFPVLFTYD 272

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 40/321 (12%), Positives = 95/321 (29%), Gaps = 25/321 (7%)

Query: 218 DIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL 277
            +G + ++     R    +I  M +    D R++V+ S+ G +  W+  +       ++ 
Sbjct: 39  PVGRIQMRTRRTLRGHLAKIYAMHWGT--DSRLLVSASQDGKLIIWDSYTTNK----VHA 92

Query: 278 FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV 337
                  +          + +     D +  + + +    ++  S E A  +        
Sbjct: 93  IPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF 151

Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI--DFNPRNPNIMATSSTDGTACIW 395
                     G     +   ++  +          +       +  +  + + D +A +W
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211

Query: 396 DLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHH 454
           D+R          +  + H+  +++  F P+G++ AT S D T  ++     +      H
Sbjct: 212 DVRE-----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 455 NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAH 514
           +N      S     +      +  G       V    +      L               
Sbjct: 267 DNIICGITS---VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323

Query: 515 PHQVGTLAGATGG--GQVYVW 533
              V     ATG     + +W
Sbjct: 324 GMAV-----ATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 11/156 (7%)

Query: 291 QQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-EYAVFSLSQQPNNVNTLYFG--EGQG 347
                    +   D   +L D  + +    ++  E  + ++   PN  N    G  +   
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATC 250

Query: 348 GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
            L                    I ++ F+  +  ++     D    +WD         + 
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKA-----DR 304

Query: 408 MKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442
             VL+ H   V     +  G ++AT S+D  + IW+
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 2e-11
 Identities = 36/197 (18%), Positives = 70/197 (35%), Gaps = 12/197 (6%)

Query: 244 PCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY 303
              D R VV+G+    +  W+ +++           T  G  + + + Q+    + +   
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETET-------CLHTLQGHTNRVYSLQFDGIHVVSGSL 195

Query: 304 DGLIRLMDAEK-EVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE 362
           D  IR+ D E       +   +     +  + N    L  G     + IWD+++ +    
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDIKTGQCLQT 252

Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP-EPMKVLSHKRAVHSAY 421
                   + +     N N + TSS DGT  +WDL++    +    ++       V    
Sbjct: 253 LQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312

Query: 422 FSPSGSSLATTSFDDTI 438
            S +    A  S + T 
Sbjct: 313 ASNTKLVCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 37/285 (12%), Positives = 82/285 (28%), Gaps = 27/285 (9%)

Query: 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIR 308
             +V+GS    +  W+  + +     +     H G +         +             
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGKC----LRTLVGHTGGVWSS-----QMRDNIIISGSTDRT 78

Query: 309 LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEA 368
           L     E  + +++      ++     +   +  G     L +WD+ + +      +   
Sbjct: 79  LKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ---CLHVLMG 135

Query: 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS 428
            +  +     +   + + + D    +WD  +        +  L              G  
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-----TCLHTLQGHTNRVY-SLQFDGIH 189

Query: 429 LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVI 488
           + + S D +I +W   + E  + IH         S         D+ +  GN   TV++ 
Sbjct: 190 VVSGSLDTSIRVW---DVETGNCIHTLTGHQSLTSGME----LKDNILVSGNADSTVKIW 242

Query: 489 SPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
                + + TLQ P                   +     G V +W
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD--DGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 8/131 (6%)

Query: 352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411
           W     KS      H+  + T        N + + S D T  +W   +      + ++ L
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTG-----KCLRTL 53

Query: 412 S-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWG 470
             H   V S+    +     +T     +         +T   H +      +   R + G
Sbjct: 54  VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 471 WDDSCVFIGNM 481
             D+ + + ++
Sbjct: 114 SRDATLRVWDI 124

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 18/151 (11%)

Query: 395 WDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFEN----- 448
           W        + +  KVL  H   V +      G+ + + S D+T+ +WS V  +      
Sbjct: 1   WR-----RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 449 ------TSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP 502
                  S    +N      +         ++   I  +      +          +   
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 114

Query: 503 YISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
             + +          +  L G     +   +
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.4 bits (147), Expect = 9e-11
 Identities = 60/324 (18%), Positives = 111/324 (34%), Gaps = 28/324 (8%)

Query: 235 GRITQMKFLPCSDVRMVVAGS----KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT 290
             +  +KF    D   +  G     ++  ++  +L ++  +D+       +L   S   +
Sbjct: 63  SVVCCVKFSN--DGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 291 QQYCLSKIF--------TSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYF 342
             Y  S  F        T   D LIR+ D E     ++               + + L  
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 343 GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS--- 399
           G G   + IWD+R     +  L  E  + T+  +P +   +A  S D    +WD  +   
Sbjct: 181 GSGDRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239

Query: 400 MATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG 459
           +     E      HK +V+S  F+  G S+ + S D ++ +W+  N  N S     N   
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299

Query: 460 RWISS-------FRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ---SPYISAIPC 509
             ++               +D  +  G+  R V          +  LQ   +  IS    
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359

Query: 510 RFHAHPHQVGTLAGATGGGQVYVW 533
              +   +    A  +G  +  +W
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 34/172 (19%)

Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEY--------AVFSLSQQPNNVNTLYFGEGQGGL 349
           I     D  +R+ D+E         SE         +V+S+    +   ++  G     +
Sbjct: 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSV 278

Query: 350 NIWDVRSRKSATEW------------LLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397
            +W++++  + ++             + H+  + ++     N   + + S D     WD 
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDK 337

Query: 398 RSMATDKPEPMKVLS-HKRAVHS------AYFSPSGSSLATTSFDDTIGIWS 442
           +S       P+ +L  H+ +V S      +   P  +  AT S D    IW 
Sbjct: 338 KSG-----NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 1e-08
 Identities = 26/173 (15%), Positives = 56/173 (32%), Gaps = 23/173 (13%)

Query: 249 RMVVAGSKLGNITFWNLDSQQDE---DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG 305
           + + AGS    +  W+ ++       D+       H   +  +V  +     + +   D 
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDR 276

Query: 306 LIRLMDAEKEVFDLVYSSEYA-------------VFSLSQQPNNVNTLYFGEGQGGLNIW 352
            ++L + +         +  +             V S++   N+   +  G    G+  W
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFW 335

Query: 353 DVRSRKSATEWLLHEARINTIDFNPR-----NPNIMATSSTDGTACIWDLRSM 400
           D +S         H   + ++            N+ AT S D  A IW  + +
Sbjct: 336 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 1/101 (0%)

Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
                  +D + ++        T+    +++         E  K L H   V    FS  
Sbjct: 14  KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND 73

Query: 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR 466
           G  LAT   + T  ++   +    + +  ++   +   +  
Sbjct: 74  GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYF 422
             LHE+ + ++ F         ++  D     W            +       +V S   
Sbjct: 261 LHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYG-----ASIFQSKESSSVLSCDI 314

Query: 423 SPSGSSLATTSFDDTIGIWS 442
           S     + T S D    ++ 
Sbjct: 315 SVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 17/157 (10%), Positives = 34/157 (21%), Gaps = 3/157 (1%)

Query: 364 LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP-MKVLSHKRAVHSAYF 422
           L H   +  +  +      + T    G   +WD+       P   +  L+    + S   
Sbjct: 48  LNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105

Query: 423 SPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT 482
            P G +L       T+ IW              +      +   +               
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165

Query: 483 RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG 519
              ++ +    R                        G
Sbjct: 166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 31/253 (12%), Positives = 70/253 (27%), Gaps = 18/253 (7%)

Query: 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYC 294
             I   K LP  D   ++ G +   ++ W                      +        
Sbjct: 98  NYIRSCKLLP--DGCTLIVGGEASTLSIW----DLAAPTPRIKAELTSSAPACYALAISP 151

Query: 295 LSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDV 354
            SK+  SC       +        +     +   +     +N  T  +  G         
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211

Query: 355 RSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHK 414
                  +     ++I ++ + P    +             ++  +  +KP+  ++  H+
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM------ESSNVEVLHVNKPDKYQLHLHE 265

Query: 415 RAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS 474
             V S  F+  G    +T  D+ +  W      +      ++     + S       DD 
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----SVLSCD--ISVDDK 319

Query: 475 CVFIGNMTRTVEV 487
            +  G+  +   V
Sbjct: 320 YIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 3/74 (4%)

Query: 324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIM 383
           E  V SL                  LN W      S  +     + + + D +  +   +
Sbjct: 265 ESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISV-DDKYI 321

Query: 384 ATSSTDGTACIWDL 397
            T S D  A ++++
Sbjct: 322 VTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 5/89 (5%)

Query: 397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN 456
           +          +  L+H   V +   S     + T      + +W   +  N S +   +
Sbjct: 34  IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD 92

Query: 457 QTGR--WISSFRAIWGWDDSCVFIGNMTR 483
              R  +I S +     D   + +G    
Sbjct: 93  CLNRDNYIRSCK--LLPDGCTLIVGGEAS 119

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 35/289 (12%), Positives = 90/289 (31%), Gaps = 22/289 (7%)

Query: 247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL 306
           D + +V+G +   I  W+ ++ +       +   H G +  +   +  +    +     +
Sbjct: 24  DDQKIVSGLRDNTIKIWDKNTLE----CKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79

Query: 307 IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLH 366
             +   E     + +              N   +        + +WD+ S    T   + 
Sbjct: 80  WDVNTGEMLNTLIHHCEAV-----LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134

Query: 367 EARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG 426
                 ++    +   + ++S D T  +W+  +      E ++ L +      A      
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-----EFVRTL-NGHKRGIACLQYRD 188

Query: 427 SSLATTSFDDTIGIWSGVNFE--NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRT 484
             + + S D+TI +W             H          + R + G  D  + + ++   
Sbjct: 189 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 485 VEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
           ++  +PA    + TL          +F         +  ++    + +W
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEF-----QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 8e-09
 Identities = 34/168 (20%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 238 TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSK 297
                +   D + +V+ S    I  WN  + +         RT  G   GI   QY    
Sbjct: 138 RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-------FVRTLNGHKRGIACLQYRDRL 190

Query: 298 IFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSR 357
           + +   D  IRL D E      +   E     +     +   +  G   G + +WD+ + 
Sbjct: 191 VVSGSSDNTIRLWDIEC--GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 358 KSATEWLL---------HEARINTIDFNPRNPNIMATSSTDGTACIWD 396
                            H  R+  + F+      + +SS D T  IWD
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 9/117 (7%)

Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSP 424
               +  + ++      + +   D T  IWD  ++     E  ++L+ H  +V    +  
Sbjct: 14  TSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCLQYDE 65

Query: 425 SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481
                 ++     +   +     NT + H         ++   +    D  + + +M
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 9e-09
 Identities = 15/168 (8%), Positives = 44/168 (26%), Gaps = 2/168 (1%)

Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
            +  I+ I   P + +++  +S DG+  ++          + ++ L +K  +    F  +
Sbjct: 10  PKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQ-AKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485
                         +   +    +     NN+    I                  +   +
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVW 533
           +  +           +   + +  +          L       QV  +
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWF 175

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 348 GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP 407
               +  R  +   +       +N+I+F+P     + T+ +DG    W+L++      + 
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTR-----KK 285

Query: 408 MKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445
           +K  +          + S + L   + DDT    + ++
Sbjct: 286 IKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 30/313 (9%), Positives = 73/313 (23%), Gaps = 23/313 (7%)

Query: 237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLS 296
           I+ +K +P     +++  S  G++T +  D Q    + +     +  P+           
Sbjct: 14  ISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDL 70

Query: 297 KIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRS 356
           +I+     G I  +D          ++  A   + +     +         GL       
Sbjct: 71  QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 357 RKSATEWLLHEARINTID------FNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410
                   +     N             N + +     +     + L     D     + 
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES 190

Query: 411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS----------GVNFENTSMIHHNNQTGR 460
               +    A         A +S D  + +               F       +   T  
Sbjct: 191 GLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250

Query: 461 WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGT 520
                   +      ++       +   +   R+ +         ++  +     +    
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-VKIACSDN---I 306

Query: 521 LAGATGGGQVYVW 533
           L  AT        
Sbjct: 307 LCLATSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 408 MKVL----SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS 463
           M+++    + K  +      PS S L  TS+D ++ ++          +  + +    + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 464 SFRAIWGWDDSCVFIGNM 481
                    D  +++G +
Sbjct: 61  CC-NFIDNTDLQIYVGTV 77

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 28/171 (16%), Positives = 50/171 (29%), Gaps = 6/171 (3%)

Query: 367 EARINTIDFNPRNPNIMA-TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
           E R      +   PN+ + T    G   + D  S      + +KV+    AVH +  S S
Sbjct: 18  EDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYAVHISRMSAS 72

Query: 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485
           G  L     D  I +      E T +                  G++D     G      
Sbjct: 73  GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ 132

Query: 486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536
             I   +      + S     +  + +    +V  +  +    +  V   +
Sbjct: 133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 7/164 (4%)

Query: 369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS 428
                D++  N     T    G   + D  +      E   VL    AVH +  S SG  
Sbjct: 22  TQQMNDWDLEN-LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGYAVHISRLSASGRY 75

Query: 429 LATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN-MTRTVEV 487
           L     D  + +      E T++      +         + GW+D     G        +
Sbjct: 76  LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 135

Query: 488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVY 531
           +            +  ++     +H  P     LA       + 
Sbjct: 136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 19/187 (10%), Positives = 38/187 (20%), Gaps = 25/187 (13%)

Query: 270 DEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFS 329
           D +       T                 ++   Y  L    D    V +  +      F 
Sbjct: 165 DMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV--VLNFSFEVVSKPFV 222

Query: 330 LSQQPNNVNTLYF-------------GEGQGGLNIWDVRSRKSATEWLLHEARINTIDFN 376
           +   P + N                        +             +  E+ I      
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282

Query: 377 PRNPNI--MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF 434
                      +   G    +D+++         KV   K  +     S    ++     
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR--------KVTEVKNNLTDLRLSADRKTVMVRKD 334

Query: 435 DDTIGIW 441
           D  I  +
Sbjct: 335 DGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 16/182 (8%), Positives = 52/182 (28%), Gaps = 19/182 (10%)

Query: 240 MKFLPCSDVRMVVAGSKLGNITFWNL---DSQQDEDNGIYLFRTHLGPISGIV----TQQ 292
                 +D + +   S        +    +   +  +  ++     G  +       +  
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241

Query: 293 YCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVN--TLYFGEGQGGLN 350
               +   +        ++ +   + ++   E ++   S   +            +G L 
Sbjct: 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLL 301

Query: 351 IWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV 410
            +DV++RK        +  +  +  +  +   +     DG    +       +KPE  + 
Sbjct: 302 KYDVKTRKVTE----VKNNLTDLRLSA-DRKTVMVRKDDGKIYTFP-----LEKPEDERT 351

Query: 411 LS 412
           + 
Sbjct: 352 VE 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 15/178 (8%)

Query: 366 HEARINT-IDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFS 423
           H   + T + F     N + T + D    ++D  +      + +  LS H   V +  ++
Sbjct: 11  HMTSVITCLQFED---NYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYA 62

Query: 424 P-----SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFI 478
                 SGS+  T    D         FE  +          + +    + G  D+ + +
Sbjct: 63  HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122

Query: 479 GNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536
             + +   V    +      +                H       +  G  V   + D
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 8e-06
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 345 GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK 404
                +I    +   + ++  H   ++ I     + NI+ + S +    I++LR   + K
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR---SGK 314

Query: 405 PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW 441
                +L     + S  F      +A    D    + 
Sbjct: 315 LVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 6e-05
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWD 396
           + +     +   NI+++RS K     +L    +I +++F  +   ++A    DG + +  
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLEI 351

Query: 397 L 397
           L
Sbjct: 352 L 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 27/197 (13%), Positives = 62/197 (31%), Gaps = 20/197 (10%)

Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397
           N +  G     + ++D  ++K   +   H+  +  + +      I+ + STD T  +WD+
Sbjct: 24  NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDI 81

Query: 398 RSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS----------GVNFE 447
           +             + +          +   + T S D+T+ +W           G   +
Sbjct: 82  KKGCCTHVFEGHNSTVRCLDI--VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 139

Query: 448 NTSMIHHNNQTGRWISSFRA------IWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQS 501
              + H   +   ++   R             + V  G+   T+ V   AQ + +  L  
Sbjct: 140 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199

Query: 502 PYISAIPCRFHAHPHQV 518
                    +     + 
Sbjct: 200 HTDRIYSTIYDHERKRC 216

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 2e-06
 Identities = 10/94 (10%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPM 408
                     + T                 +   +AT S D +  +W++          +
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK--PSDHPII 262

Query: 409 KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWS 442
              +H  +  ++    + +++ +   D  I  W+
Sbjct: 263 IKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 13/110 (11%), Positives = 34/110 (30%), Gaps = 4/110 (3%)

Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
           H   I  +  +  +   + ++  +G    WD+    T     +    H   +     +  
Sbjct: 11  HNKAITALSSSA-DGKTLFSADAEGHINSWDIS---TGISNRVFPDVHATMITGIKTTSK 66

Query: 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC 475
           G     +  D    + +G +  ++S    N  + + +    +  G     
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 116

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 3e-04
 Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 6/107 (5%)

Query: 413 HKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI--HHNNQTGRWISSFRAIWG 470
           H +A+ +   S  G +L +   +  I  W      +  +    H       I+  +    
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT----MITGIKTTSK 66

Query: 471 WDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQ 517
            D   V   +  + V         S A         +     A    
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDI 113

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 8/115 (6%)

Query: 339 TLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397
                +   G    D+++ K+   E+        T   +P++PN +           +DL
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDL 279

Query: 398 RSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMI 452
           +       + +K  +     +   F   G  L      + + +++    E    I
Sbjct: 280 KQ-----RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 21/190 (11%), Positives = 42/190 (22%), Gaps = 12/190 (6%)

Query: 340 LYFGEGQGGLNIWDVRSRKSATEWLL-HEARINTIDFNPRNPNIMATSSTDGTACIWDLR 398
           +        L++ DV S       ++  +    T    P N      ++  G     DL 
Sbjct: 11  MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 70

Query: 399 SMATDK--PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW-SGVNFENTSMIHHN 455
           +                 R+++S   SP G  +  T            V      +    
Sbjct: 71  TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 456 NQTGR--------WISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAI 507
           +                +      D S    G     ++V +     ++           
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190

Query: 508 PCRFHAHPHQ 517
                     
Sbjct: 191 APDVLYFWPH 200

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 22/156 (14%), Positives = 43/156 (27%), Gaps = 6/156 (3%)

Query: 383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIW 441
           M  ++      + D+   A+D      V+  K    +A  +P   +     +    I   
Sbjct: 11  MIVTNYPNNLHVVDV---ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGI 67

Query: 442 SGVNFENTSMIHHNNQTGRWISSFR--AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL 499
                +NT   + ++  G    S    AI           N T+ +      +   +   
Sbjct: 68  DLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVF 127

Query: 500 QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS 535
            +               +   L  A   G +YV   
Sbjct: 128 STADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 163

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (109), Expect = 3e-06
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 371 NTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSGSSL 429
              +      +++AT S D    I+ ++       + +K L+ HK  V++  +     +L
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPM----KIIKALNAHKDGVNNLLWETPS-TL 272

Query: 430 ATTSFDDTIGIWS 442
            ++  D  I  W+
Sbjct: 273 VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 23/152 (15%), Positives = 36/152 (23%), Gaps = 18/152 (11%)

Query: 366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS 425
           H   I  +  NP     + + S DG    W   SM  D         H   + S   S +
Sbjct: 12  HNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD---------HSNLIVSLDNSKA 57

Query: 426 GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV 485
               + +  D                             F A+   DD  + + + T  +
Sbjct: 58  QEYSSISWDDTLKVNG----ITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 113

Query: 486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQ 517
                      A   S    A+          
Sbjct: 114 IKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV 145

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 7e-06
 Identities = 27/251 (10%), Positives = 68/251 (27%), Gaps = 10/251 (3%)

Query: 194 LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVA 253
           L  G      G V           +  S+ +  ++  +++ G I+ + +        VV 
Sbjct: 80  LCSGDES---GKVIVWGWTFDKESN--SVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 134

Query: 254 GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAE 313
             +     F + DS           +               ++                 
Sbjct: 135 EGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF 194

Query: 314 KEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTI 373
                  +     V  +   P++   +        ++ +D +S +        +  +   
Sbjct: 195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG 254

Query: 374 DFNP--RNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS-LA 430
            F     +    AT   D T  +WD+ +    +     +   +          +G+  + 
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQ--KWTLDKQQLGNQQVGVVATGNGRII 312

Query: 431 TTSFDDTIGIW 441
           + S D T+  +
Sbjct: 313 SLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 8e-05
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI--NTIDFNPRNPNIMATSSTDGTACIW 395
                      + +WDV + K   +W L + ++    +         + + S DGT   +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

Query: 396 DL 397
           +L
Sbjct: 324 EL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 12/122 (9%)

Query: 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--HKRAVHSAYFSP- 424
                + ++P    I             D       K  P+   +      V +  FSP 
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDD---GDSKVPPVVQFTGHGSSVVTTVKFSPI 74

Query: 425 -SGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR 483
                L +      + +W       T     N+      S F+ + G      +     R
Sbjct: 75  KGSQYLCSGDESGKVIVW-----GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR 129

Query: 484 TV 485
             
Sbjct: 130 LC 131

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 9e-04
 Identities = 27/253 (10%), Positives = 74/253 (29%), Gaps = 13/253 (5%)

Query: 235 GRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT---- 290
             +T +KF P    + + +G + G +  W     ++ ++     ++    ++G ++    
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 291 -QQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYSSEYAVFSLSQQPNNVNTLYFGEG 345
             +     +     D     +  +                A      +P    T+     
Sbjct: 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 183

Query: 346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP 405
                    +   S        + +  ++F+P +   + T  +D     +D +S    K 
Sbjct: 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243

Query: 406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF 465
                   +  + +  +       AT   D TI +W   +   +  +       + + + 
Sbjct: 244 IEDDQEPVQGGIFALSWLD-SQKFATVGADATIRVW---DVTTSKCVQKWTLDKQQLGNQ 299

Query: 466 RAIWGWDDSCVFI 478
           +       +   I
Sbjct: 300 QVGVVATGNGRII 312

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 363 WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS--HKRAVHSA 420
             +  +          +   +A++S D T  IW++ ++     +  K +    +      
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-----KVEKTIPVGTRIEDQQL 287

Query: 421 YFSPSGSSLATTSFDDTIGIW 441
               +  +L + S +  I   
Sbjct: 288 GIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 15/115 (13%), Positives = 27/115 (23%), Gaps = 8/115 (6%)

Query: 368 ARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS-HKRAVHSAYFSPSG 426
                +   P    I   +    +     + S         ++ + H      A  SPSG
Sbjct: 18  GTAVVLGNTPAGDKIQYCN--GTSVYTVPVGS-----LTDTEIYTEHSHQTTVAKTSPSG 70

Query: 427 SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481
              A+      + IW      +         +G              + V  G  
Sbjct: 71  YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 125

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 6/60 (10%), Positives = 16/60 (26%)

Query: 338 NTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL 397
             +        + IW+V + K      +     +           + + S +G     + 
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 19/155 (12%), Positives = 34/155 (21%), Gaps = 5/155 (3%)

Query: 327 VFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATS 386
              L   P   + + +  G   +    V S      +  H  +      +P +    A+ 
Sbjct: 20  AVVLGNTPAG-DKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASG 76

Query: 387 STDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF 446
              G   IWD           + V      V    +      +A             +  
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPV--FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134

Query: 447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM 481
             TS  +   Q     S                + 
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 169

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 12/122 (9%), Positives = 30/122 (24%), Gaps = 7/122 (5%)

Query: 331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDG 390
                +++       + GL   D+ + + A   +                          
Sbjct: 203 YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYN 260

Query: 391 TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS 450
               +DL          +K +    + +S   S  GS++        +  +     E   
Sbjct: 261 VLESFDLEKN-----ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315

Query: 451 MI 452
            +
Sbjct: 316 QV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 1e-05
 Identities = 28/157 (17%), Positives = 49/157 (31%), Gaps = 4/157 (2%)

Query: 381 NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIG 439
           + +   +      + D   MA DK   + +            +P G    AT +  +++ 
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDK--VITIADAGPTPMVPMVAPGGRIAYATVNKSESLV 59

Query: 440 IWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATL 499
               V  E    I  +    R  S F A    D   + I      +E+     + +   L
Sbjct: 60  KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119

Query: 500 QSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536
                 +        P Q+  LA A  G ++Y    D
Sbjct: 120 YDAETLSRRK-AFEAPRQITMLAWARDGSKLYGLGRD 155

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 18/203 (8%), Positives = 46/203 (22%), Gaps = 8/203 (3%)

Query: 340 LYFGEGQGGLNIWDVRSRKSATEWLLHEA--RINTIDFNPRNPNIMATSSTDGTACIWDL 397
           +        L + D           + +A          P      AT +   +    DL
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 398 RSMA-TDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN 456
            +     + +        +++  A  SP G +LA       + +           +   +
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT--RVALYD 121

Query: 457 QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVAT---LQSPYISAIPCRFHA 513
                               +  + ++   +              ++   I +     +A
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 514 HPHQVGTLAGATGGGQVYVWTSD 536
            P  +         G +      
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYT 204

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 23/204 (11%), Positives = 53/204 (25%), Gaps = 21/204 (10%)

Query: 343 GEGQGGLNIWDVRSRKSATEWLLHE-------ARINTIDFNPRNPNIMATSSTDGTACIW 395
           G+    + ++D  +     +  L +        R++ I     +  ++        A   
Sbjct: 92  GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151

Query: 396 DLRSMATDKPEPMKVLSHKRAVHSAYF---SPSGSSLATTSFDDTIGIWSGVNFENTSMI 452
            +   + D+        H     +A     S   S  A+                   ++
Sbjct: 152 SVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG---------IV 202

Query: 453 HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFH 512
                  +  SS  A   +    V+    +     I  A     A +           F 
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262

Query: 513 AHPHQVGTLAGATGGGQVYVWTSD 536
           +   Q+  +A       + + T +
Sbjct: 263 SAGFQM--VAKLKNTDGIMILTVE 284

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 20/175 (11%), Positives = 36/175 (20%), Gaps = 17/175 (9%)

Query: 372 TIDFNPRNPNIMATSSTDGTACIW-------DLRSMATDKPEPMKVLSHKRAVHSAYFSP 424
                 R  +I   +   GT   W            +      + V  H  +   A  S 
Sbjct: 26  GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGS-DFALAST 84

Query: 425 SGSSLATTSFDDTIGIWSGVN--FENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT 482
           S +  A     D + ++  V         +    +                +C+      
Sbjct: 85  SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG 144

Query: 483 -RTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD 536
                 +S                     FH HP    T    +    +      
Sbjct: 145 SSAAAGLSVPGASDDQLT------KSASCFHIHPGAAATHYLGSCPASLAASDLA 193

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 2e-04
 Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW------------LLHEARINTI 373
            +FS+S   +   +     G G L +WD +   +                L H   +  I
Sbjct: 16  DIFSVSACNSFTVS---CSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 374 DFNPRNPNIMATSSTDGTACIWDLRS------MATDKPEPMKVLSHKRAVHSAYFSPSGS 427
           + +     ++AT+S  G    + +        +  +K + +     K +  +  +  S  
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 428 S-----LATTSFDDTIGIWS 442
                 L  T    T  IW 
Sbjct: 133 RLLSHRLVATDVKGTTYIWK 152

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 56/306 (18%)

Query: 249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--------HLGPISGIVTQQYCLSKIFT 300
              V+ S  G +  W+     +E+     +          H+  +  I    + L  + T
Sbjct: 25  SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84

Query: 301 SCYDGLIRLMDAEKE--------------VFDLVYSSEYAV-FSLSQQPNNVNTLYFGEG 345
           + + G +      +E                D+   S +A+ +  S      + L   + 
Sbjct: 85  TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144

Query: 346 QGGLNIWDVRSRKSATEWLL------------------HEARINTIDFNPRNPNIMATSS 387
           +G   IW        +  L                         ++D + R   ++AT  
Sbjct: 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--GLIATGF 202

Query: 388 TDGTACIWDLRSMATDKPEPMKV--LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN 445
            +GT  I +L ++        +   +++  ++ S  FSP GS LA     ++ G  +   
Sbjct: 203 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262

Query: 446 FENTSMIHHNNQTGRWISSFRAIWGWDD-----------SCVFIGNMTRTVEVISPAQRR 494
            E    I   +       +    +                 +        +       + 
Sbjct: 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

Query: 495 SVATLQ 500
            + TL 
Sbjct: 323 RITTLN 328

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 8e-04
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 11/98 (11%)

Query: 352 WDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL 411
               S +++     H + + ++ FN      + ++  DG    WD+++      E +  L
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTK-----ERITTL 327

Query: 412 S-HKRAV----HSAYFSPSGSSLATTSFDDTIGIWSGV 444
           + H   +            G SLA     D   +  G 
Sbjct: 328 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 365

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 5e-04
 Identities = 9/92 (9%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSL-ATTSFDDTIGIWSG 443
            +S      + D+ S      +    +        A  SP G+ +    +  + + I   
Sbjct: 7   ANSESDNISVIDVTSN-----KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61

Query: 444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSC 475
                 + +   +       S      +  + 
Sbjct: 62  ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	536
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.75
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.48
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.43
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.43
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.38
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.38
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.22
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.17
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.1
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.07
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.03
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.01
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.99
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.74
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.68
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.38
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.15
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.97
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.96
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.78
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.74
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.59
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.43
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.27
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.21
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.05
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.99
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.84
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.52
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.5
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.46
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.25
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.92
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.3
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.12
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.07
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.67
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.1
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.48
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.45
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	92.21
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.45
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.94
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	88.87
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.21

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=316.60  Aligned_cols=283  Identities=12%  Similarity=0.164  Sum_probs=240.5

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      .|...|++++|+|  ++++|++|+ ||.|+|||+...... ........+|.+.|.+++|+|++ ++|++|+.||.|++|
T Consensus        49 ~H~~~V~~v~fs~--~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iw  124 (337)
T d1gxra_          49 NHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIW  124 (337)
T ss_dssp             CCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEE
T ss_pred             CCCCcEEEEEECC--CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeecccccccc
Confidence            5889999999999  999999998 799999999864321 22333456899999999999999 999999999999999


Q ss_pred             ECCCCe--E-EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          311 DAEKEV--F-DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       311 d~~~~~--~-~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                      |+....  . .....|...+.+++|+|++ .++++++.++.|.+||+.+++.......|...|.+++|++++ ..+++++
T Consensus       125 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~-~~~~~~~  202 (337)
T d1gxra_         125 DLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG-TKLWTGG  202 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEE
T ss_pred             ccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            987543  2 2344678899999999998 899999999999999999999888888999999999999987 7999999


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEE
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRA  467 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  467 (536)
                      .|+.|++||++++     .......|...|.+++|+|++++|++++.|+.|++||+.+.+......|..    .+.  .+
T Consensus       203 ~d~~v~i~d~~~~-----~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~i~--~v  271 (337)
T d1gxra_         203 LDNTVRSWDLREG-----RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES----CVL--SL  271 (337)
T ss_dssp             TTSEEEEEETTTT-----EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSS----CEE--EE
T ss_pred             ccccccccccccc-----eeecccccccceEEEEEcccccccceecccccccccccccccccccccccc----ccc--eE
Confidence            9999999999885     355667899999999999999999999999999999998877654433322    233  47


Q ss_pred             EEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          468 IWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       468 ~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .|+|++++|++|+.|+.|++||+.+++.+..+. |.. .+ ..++|+| ++.+|++|+.||.|+|||+
T Consensus       272 ~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~-~v-~~~~~s~-d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESS-SV-LSCDISV-DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS-CE-EEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCC-CE-EEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence            899999999999999999999999998887765 233 33 4678898 5699999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.3e-39  Score=314.66  Aligned_cols=290  Identities=16%  Similarity=0.146  Sum_probs=241.5

Q ss_pred             cccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEE
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLM  310 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vw  310 (536)
                      ..+.+.+..++++|  +|+.|+.++ ++.|.+|++.+    ......+.+|...|++++|+|++ ++|++|+.||+|++|
T Consensus        14 ~~~r~~~~~~a~~~--~g~~l~~~~-~~~v~i~~~~~----~~~~~~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iw   85 (311)
T d1nr0a1          14 RTARGTAVVLGNTP--AGDKIQYCN-GTSVYTVPVGS----LTDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIW   85 (311)
T ss_dssp             CCCTTCCCCCEECT--TSSEEEEEE-TTEEEEEETTC----SSCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEE
T ss_pred             CCCCCCeEEEEEcC--CCCEEEEEe-CCEEEEEECCC----CceeEEEcCCCCCEEEEEEeCCC-CeEeccccCceEeee
Confidence            34456778899999  999999886 56799999987    67778889999999999999998 999999999999999


Q ss_pred             ECCCCeE---EEeecCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          311 DAEKEVF---DLVYSSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       311 d~~~~~~---~~~~~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      |+.++..   ..+..|..+|.+++|+|++ ++|++++.  +..+++|++.+++....+.+|...|++++|+|+++.+|++
T Consensus        86 d~~~~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s  164 (311)
T d1nr0a1          86 DTTQTTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS  164 (311)
T ss_dssp             ESSSTTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             eeeccccccccccccccCccccccccccc-cccccccccccccccccccccccccccccccccccccccccccceeeecc
Confidence            9987643   2345688999999999998 78888875  4569999999999999999999999999999998778999


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC--CCCceee
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN--QTGRWIS  463 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~  463 (536)
                      |+.||.|++||+++++    .......|...|+++.|+|++++|++++.|+.|++||+.++.....+....  ..++.-.
T Consensus       165 gs~d~~i~i~d~~~~~----~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~  240 (311)
T d1nr0a1         165 GSDDNTVAIFEGPPFK----FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  240 (311)
T ss_dssp             EETTSCEEEEETTTBE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             cccccccccccccccc----cccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999853    444555799999999999999999999999999999999887766654221  1111112


Q ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee-eeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          464 SFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS-AIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       464 ~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~-~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +..++|+|++++|++|+.||.|+|||+.+++++.++..++.. ...+.+.|+   ++.|++++.||.|++||.|
T Consensus       241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~---~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT---KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC---SSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec---CCEEEEEECCCEEEEEeCC
Confidence            334789999999999999999999999999999888765432 222345564   3689999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-38  Score=304.93  Aligned_cols=294  Identities=16%  Similarity=0.222  Sum_probs=256.5

Q ss_pred             cccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE
Q 009380          220 GSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF  299 (536)
Q Consensus       220 w~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  299 (536)
                      |.....+...+++|.+.|++|+|+|  ++++|++|+.||+|+|||+.+    +..+..+.+|...|.+++|+|++ .+++
T Consensus         3 w~p~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~----~~~~~~~~~h~~~V~~~~~~~~~-~~~~   75 (317)
T d1vyhc1           3 WIPRPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSG-KLLA   75 (317)
T ss_dssp             CCCCSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTT----CCCCEEECCCSSCEEEEEECTTS-SEEE
T ss_pred             cCCCCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCC----CCEEEEEeCCCCcEEEEeeeccc-cccc
Confidence            5544555566799999999999999  999999999999999999988    67888999999999999999998 9999


Q ss_pred             EEECCCeEEEEECCCCeEEE-eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380          300 TSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       300 s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      +++.++.+.+|+........ ...+...+.++.|++++ +.+++++.|+.+.+||+++++.+..+..|...+.+++|+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (317)
T d1vyhc1          76 SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  154 (317)
T ss_dssp             EEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             ccccccccccccccccccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccC
Confidence            99999999999988765544 44678899999999998 89999999999999999999999999999999999999998


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCC--------------------CeEEEEeCCCcE
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSG--------------------SSLATTSFDDTI  438 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g--------------------~~l~t~s~dg~I  438 (536)
                      + .+|++++.|+.|++|++.+..    ....+..|...+.++.|+|++                    .++++++.|+.|
T Consensus       155 ~-~~l~~~~~d~~v~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  229 (317)
T d1vyhc1         155 G-TLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI  229 (317)
T ss_dssp             S-SEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEE
T ss_pred             C-CEEEEEeCCCeEEEEeeccce----eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEE
Confidence            7 799999999999999999853    445556788899999998753                    468999999999


Q ss_pred             EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCC
Q 009380          439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQV  518 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~  518 (536)
                      ++||+.+++.+..+....   ..+.  .++|+|++++|++|+.||.|+|||+.+++++..+.+|...+  ..++|+| ++
T Consensus       230 ~~~~~~~~~~~~~~~~~~---~~v~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V--~~~~~s~-~~  301 (317)
T d1vyhc1         230 KMWDVSTGMCLMTLVGHD---NWVR--GVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV--TSLDFHK-TA  301 (317)
T ss_dssp             EEEETTTTEEEEEEECCS---SCEE--EEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE--EEEEECS-SS
T ss_pred             EEEECCCCcEEEEEeCCC---CCEE--EEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCE--EEEEEcC-CC
Confidence            999999988877765322   2233  37799999999999999999999999999999998866554  3678898 56


Q ss_pred             CEEEEEccCCeEEEEe
Q 009380          519 GTLAGATGGGQVYVWT  534 (536)
Q Consensus       519 ~~lasgs~Dg~v~iW~  534 (536)
                      .+|++|+.||.|+|||
T Consensus       302 ~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         302 PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEeCCCeEEEeC
Confidence            8999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=311.05  Aligned_cols=280  Identities=13%  Similarity=0.175  Sum_probs=243.0

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccc------cccccCCceEEEEEEecCCccEEEEE
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN------IARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~------~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      +|.+.|.++.|+++|++++++          + ||.|+|||+......      ....|.+.|.+++|+|  ++++|++|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg----------~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~--dg~~l~s~  115 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTG----------G-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVG  115 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEE----------C-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEE----------E-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC--CCCEEEEe
Confidence            799999999999999999954          4 789999998543211      2246788999999999  99999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEec
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQ  333 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~  333 (536)
                      +.||.|++||+....  ......+..|...|.++.|+|++ .++++++.|+.|++|++.++..... ..|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s  192 (337)
T d1gxra_         116 GEASTLSIWDLAAPT--PRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             ESSSEEEEEECCCC----EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred             ecccccccccccccc--ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            999999999987532  45567788999999999999998 9999999999999999998876544 4578899999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecc
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSH  413 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~  413 (536)
                      +++ ..+++++.||.|++||+++++.+..+. |...|.+++|+|++ .+|++++.|+.|++||++..     .......|
T Consensus       193 ~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~  264 (337)
T d1gxra_         193 NDG-TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKP-----DKYQLHLH  264 (337)
T ss_dssp             TTS-SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSS-----CEEEECCC
T ss_pred             ccc-cccccccccccccccccccceeecccc-cccceEEEEEcccc-cccceecccccccccccccc-----cccccccc
Confidence            998 899999999999999999998887765 88999999999977 79999999999999999875     34566789


Q ss_pred             cCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          414 KRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       414 ~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      ...|++++|+|++++|++++.|+.|++||+.+++.+..+.+..    .+.  .++|+|++++|++|+.|+.|+|||+
T Consensus       265 ~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~----~v~--~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----SVL--SCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS----CEE--EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCC----CEE--EEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999999999999999999999999999999998887776543    233  4789999999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-38  Score=314.71  Aligned_cols=314  Identities=19%  Similarity=0.244  Sum_probs=240.3

Q ss_pred             cccccceEEecccccCccc-----cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-------
Q 009380          210 KIEVGSCVDIGSLTLKPEN-----IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-------  277 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~-----~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-------  277 (536)
                      +...++...+|+.......     ....|.+.|+||+|+|  +|++|++|+ |+.|+||++.+    +..+..       
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~--dg~~lasg~-d~~i~iW~~~~----~~~~~~~~~~~~~  105 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSD----GSLVARLSDDSAA  105 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTT----CCEEEEECC----
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECC--CCCEEEEEe-CCeEEEEEecc----cceEeeecccccc
Confidence            4566677888986433211     1135899999999999  999999987 89999999986    333333       


Q ss_pred             -----------eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEEC
Q 009380          278 -----------FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEG  345 (536)
Q Consensus       278 -----------~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~  345 (536)
                                 ...|...|.+++|+|++ ++|++|+.||.|++||...+..... .+|...|.++++++++ ..+++++.
T Consensus       106 ~~~~~~~~~~~~~~~~~~V~~l~~s~~~-~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~  183 (388)
T d1erja_         106 NKDPENLNTSSSPSSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSG  183 (388)
T ss_dssp             -------------CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEET
T ss_pred             cccccccccccccCCCCCEEEEEECCCC-Ccceeccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence                       23577789999999998 9999999999999999998866544 4588999999999988 79999999


Q ss_pred             CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC---CCcceeecccCceeEEEE
Q 009380          346 QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK---PEPMKVLSHKRAVHSAYF  422 (536)
Q Consensus       346 dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~---~~~~~~~~~~~~v~~l~~  422 (536)
                      +|.+++||+++......... .....++.+++.++.+|++|+.||.|++||++++....   .......+|...|.++.|
T Consensus       184 ~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         184 DRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             TSEEEEEETTTTEEEEEEEC-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             ceeeeeeecccccccccccc-ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            99999999998887766664 44555666766556899999999999999998864211   111122368899999999


Q ss_pred             ccCCCeEEEEeCCCcEEEEeCCCCCcceEEecc---------CCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          423 SPSGSSLATTSFDDTIGIWSGVNFENTSMIHHN---------NQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       423 sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      +|++++|++++.|+.|++||+.+..........         .....  .+..++|+|++++|++|+.||.|++||+.++
T Consensus       263 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS--CEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccc--eEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999999999999876543322111         01111  2344789999999999999999999999999


Q ss_pred             ccceeccCCceeeeeeeE----eecCCCCCEEEEEccCCeEEEEecC
Q 009380          494 RSVATLQSPYISAIPCRF----HAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       494 ~~~~~l~~~~~~~~~~~~----~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      +++.++.+|...+..+.+    .|+| ++.+|++|+.||.|+||+++
T Consensus       341 ~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         341 NPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             cEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            999999987766554333    3677 56899999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-37  Score=302.20  Aligned_cols=287  Identities=15%  Similarity=0.211  Sum_probs=235.7

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEeCCCcEEE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITF  262 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~i  262 (536)
                      ..+.++.++|+|+.+++.           .++.+.+|++.. ....+...|.+.|++++|+|  +|++|++|+.||+|+|
T Consensus        18 ~~~~~~a~~~~g~~l~~~-----------~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp--~g~~latg~~dg~i~i   84 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYC-----------NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYYCASGDVHGNVRI   84 (311)
T ss_dssp             TCCCCCEECTTSSEEEEE-----------ETTEEEEEETTCSSCCEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEE
T ss_pred             CCeEEEEEcCCCCEEEEE-----------eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeC--CCCeEeccccCceEee
Confidence            445678889999998865           345788999854 34456688999999999999  9999999999999999


Q ss_pred             EECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEE-EeecCCCceeEEEecCCCCCE
Q 009380          263 WNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFD-LVYSSEYAVFSLSQQPNNVNT  339 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~-~~~~~~~~i~~l~~~~~~~~~  339 (536)
                      ||+....  ......+..|..+|.+++|+|++ .+|++++.  +..+++|++++++.. .+..|...|.+++|+|++...
T Consensus        85 wd~~~~~--~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~  161 (311)
T d1nr0a1          85 WDTTQTT--HILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFR  161 (311)
T ss_dssp             EESSSTT--CCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred             eeeeccc--cccccccccccCccccccccccc-cccccccccccccccccccccccccccccccccccccccccccceee
Confidence            9998742  23345688899999999999998 89998886  456999999987654 345678899999999998667


Q ss_pred             EEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC---CCCcceeecccCc
Q 009380          340 LYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD---KPEPMKVLSHKRA  416 (536)
Q Consensus       340 l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~---~~~~~~~~~~~~~  416 (536)
                      |++|+.||.|++||+++++....+..|...|+++.|+|++ ++|++++.|+.|++||++++...   ........+|...
T Consensus       162 l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~  240 (311)
T d1nr0a1         162 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  240 (311)
T ss_dssp             EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             ecccccccccccccccccccccccccccccccccccCccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999999999999999987 79999999999999999875421   1112233468999


Q ss_pred             eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          417 VHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       417 v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      |++++|+|++++|++|+.||.|+|||+++++.+..+........  ..+.+  .+++.+|++++.||.|++||.+
T Consensus       241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~--~~~~~--~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED--QQLGI--IWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGG--CEEEE--EECSSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccc--eEEEE--EecCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999999999999999988887764433222  22223  4456689999999999999964

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-36  Score=296.11  Aligned_cols=291  Identities=14%  Similarity=0.195  Sum_probs=245.5

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      ......+++|.+.|++|+|+|  ++.+|++|+.||.|+|||+.+    +..+..+..|...|.+++|+|++ .++++|+.
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~--~~~~l~sgs~Dg~v~iWd~~~----~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~  117 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGT--DSRLLVSASQDGKLIIWDSYT----TNKVHAIPLRSSWVMTCAYAPSG-NYVACGGL  117 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTT----TEEEEEEECSCSCEEEEEECTTS-SEEEEEET
T ss_pred             eeeeEEECCCCCCEEEEEECC--CCCEEEEEECCCceeeeeccc----ceeEEEEecccccEEeeEeeccc-eeeeeecc
Confidence            344556789999999999999  999999999999999999997    77888999999999999999999 99999999


Q ss_pred             CCeEEEEECCCCe-----EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecC
Q 009380          304 DGLIRLMDAEKEV-----FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       304 dg~I~vwd~~~~~-----~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      |+.+++|+.....     ......|............  ..+.....+.....++............+...+..+.+.+.
T Consensus       118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (340)
T d1tbga_         118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD  195 (340)
T ss_dssp             TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT
T ss_pred             cceeecccccccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeeeccccc
Confidence            9999999987542     2233345555555555544  57888899999999999888777777788899999999996


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      + .++++++.|+.|++||+++++    ....+.+|...|++++|+|++.+|++++.|+.|++||+........+......
T Consensus       196 ~-~~~~~~~~d~~v~i~d~~~~~----~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~  270 (340)
T d1tbga_         196 T-RLFVSGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII  270 (340)
T ss_dssp             S-SEEEEEETTTEEEEEETTTTE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred             c-ceeEEeecCceEEEEECCCCc----EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccccc
Confidence            6 799999999999999999853    44455689999999999999999999999999999999988776666433222


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                      . .+  ..+.|+|++.+|++|+.||.|++||+.+++.+..+.+|...+  ..++|+| ++.+|++|+.||.|+|||
T Consensus       271 ~-~i--~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V--~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         271 C-GI--TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV--SCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             S-CE--EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             C-ce--EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCE--EEEEEeC-CCCEEEEEccCCEEEEeC
Confidence            2 23  347899999999999999999999999999999998876544  3678898 568999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-36  Score=303.30  Aligned_cols=290  Identities=14%  Similarity=0.159  Sum_probs=237.8

Q ss_pred             cccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-------------------ccccccCCceEEE
Q 009380          180 KDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-------------------NIARIMPGRITQM  240 (536)
Q Consensus       180 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-------------------~~~~~~~~~I~~v  240 (536)
                      .+|.+.|.|+.|+|||++|+..          + |+.|+||++.....                   .....|...|+++
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg----------~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l  127 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATG----------C-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV  127 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEE----------C-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEE----------e-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEE
Confidence            3699999999999999998843          3 67888888643211                   1123467789999


Q ss_pred             EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe
Q 009380          241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV  320 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~  320 (536)
                      +|+|  ++++|++|+.||.|++|+...    ...+..+.+|...|.++.|++++ ..+++++.++.|++||..+......
T Consensus       128 ~~s~--~~~~l~s~~~dg~v~i~~~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~  200 (388)
T d1erja_         128 CFSP--DGKFLATGAEDRLIRIWDIEN----RKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLT  200 (388)
T ss_dssp             EECT--TSSEEEEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EECC--CCCcceecccccccccccccc----ccccccccccccccccccccccc-ccccccccceeeeeeeccccccccc
Confidence            9999  999999999999999999987    77888899999999999999998 9999999999999999999888777


Q ss_pred             ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE-------eccCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 009380          321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW-------LLHEARINTIDFNPRNPNIMATSSTDGTAC  393 (536)
Q Consensus       321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~  393 (536)
                      ..+.....++.+.+.++++|++|+.||.|++||++++..+..+       .+|...|.+++|+|++ .+|++++.||.|+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~d~~i~  279 (388)
T d1erja_         201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVK  279 (388)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEE
T ss_pred             cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC-CEEEEEECCCcEE
Confidence            7777778888888766689999999999999999988776554       3588899999999987 7999999999999


Q ss_pred             EEeCCCCCCCC--------CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          394 IWDLRSMATDK--------PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       394 iwdl~~~~~~~--------~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      +||++......        ........|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+..   .+..+
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~---~V~~~  356 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN---SVISV  356 (388)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS---CEEEE
T ss_pred             EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC---CEEEE
Confidence            99998754211        11233446889999999999999999999999999999999998888753222   23332


Q ss_pred             E----EEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          466 R----AIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       466 ~----~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .    ..|+|++.+|++|+.||.|+||+++
T Consensus       357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         357 AVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            2    3478999999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-36  Score=286.81  Aligned_cols=287  Identities=13%  Similarity=0.188  Sum_probs=252.7

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      +..|.||.+.|.++.|+|++.+++          +++.||.|+|||+... ....++.|.+.|.+++|+|  ++.+++++
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~----------s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~   77 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMV----------SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASC   77 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEE----------EEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEE
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEE----------EEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--cccccccc
Confidence            457899999999999999999888          4578999999998543 3445678999999999999  99999999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEE-eecCCCceeEEEec
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQ  333 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~  333 (536)
                      +.++.+.+|+...    ......+..|...+.++.|++++ ..+++++.|+.+++||++++.... +..|...+.+++|+
T Consensus        78 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (317)
T d1vyhc1          78 SADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN  152 (317)
T ss_dssp             ETTSCCCEEETTS----SCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred             ccccccccccccc----cccccccccccccceeeeccCCC-ceEEeeccCcceeEeecccceeeeEEccCCCcceeeecc
Confidence            9999999999987    66777888999999999999998 999999999999999999876654 44678899999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCC-------------------CCEEEEEeCCCcEEE
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN-------------------PNIMATSSTDGTACI  394 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~-------------------~~~l~s~s~dg~i~i  394 (536)
                      +++ ++|++++.||.|++|++.+++.+..+..|...+.++.|+|++                   ..++++++.|+.|++
T Consensus       153 ~~~-~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         153 QDG-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             TTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             cCC-CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            998 899999999999999999999999999999999999998753                   247899999999999


Q ss_pred             EeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCC
Q 009380          395 WDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDS  474 (536)
Q Consensus       395 wdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~  474 (536)
                      ||+++++    ....+.+|...|.+++|+|++++|++++.||.|+|||+.+++.+..+..+.   ..+.  .++|+|+++
T Consensus       232 ~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~---~~V~--~~~~s~~~~  302 (317)
T d1vyhc1         232 WDVSTGM----CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE---HFVT--SLDFHKTAP  302 (317)
T ss_dssp             EETTTTE----EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS---SCEE--EEEECSSSS
T ss_pred             EECCCCc----EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC---CCEE--EEEEcCCCC
Confidence            9999853    455666899999999999999999999999999999999999888875322   2233  477999999


Q ss_pred             EEEEEcCCCcEEEEc
Q 009380          475 CVFIGNMTRTVEVIS  489 (536)
Q Consensus       475 ~l~~gs~dg~I~v~d  489 (536)
                      +|++|+.||.|+|||
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCeEEEeC
Confidence            999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-36  Score=299.24  Aligned_cols=246  Identities=14%  Similarity=0.125  Sum_probs=200.7

Q ss_pred             ccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEE
Q 009380          232 IMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMD  311 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd  311 (536)
                      .+.++|+|++|+|  ++.+||+|+.||.|+||++....  ...+..+.+|.++|.+|+|+|++ ++|++|+.|++|++||
T Consensus         5 ~~~~pIt~~~~s~--dg~~la~~~~~~~i~iw~~~~~~--~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           5 FLVEPISCHAWNK--DRTQIAICPNNHEVHIYEKSGNK--WVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SCSSCCCEEEECT--TSSEEEEECSSSEEEEEEEETTE--EEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEE
T ss_pred             CCCCCeEEEEECC--CCCEEEEEeCCCEEEEEECCCCC--EEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEe
Confidence            3467899999999  99999999999999999997622  34677889999999999999998 9999999999999999


Q ss_pred             CCCCeEEE---eecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccc----eeEeccCCCeEEEEEecCCCCEEE
Q 009380          312 AEKEVFDL---VYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSA----TEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       312 ~~~~~~~~---~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~----~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      +.++....   ...|...|.+++|+|++ +.|++|+.|+.|++|++......    .....|...|.+++|+|++ .+|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~-~~l~  157 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-VLLA  157 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS-SEEE
T ss_pred             eccccccccccccccccccccccccccc-ccceeecccCcceeeeeecccccccccccccccccccccccccccc-ccee
Confidence            98775432   34577899999999998 89999999999999998876543    2234688999999999987 7999


Q ss_pred             EEeCCCcEEEEeCCCCCCCC--------------CCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcce
Q 009380          385 TSSTDGTACIWDLRSMATDK--------------PEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTS  450 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~--------------~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~  450 (536)
                      +|+.|+.|++||+.......              ........|...|.+++|+|+|++|++++.|+.|++||+.++..+.
T Consensus       158 s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~  237 (371)
T d1k8kc_         158 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  237 (371)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             ccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeeccccee
Confidence            99999999999987643111              1122334688899999999999999999999999999999888777


Q ss_pred             EEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcC
Q 009380          451 MIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISP  490 (536)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~  490 (536)
                      .+....   ..+.  .++|+|++.+|++|+ |+.+.+|..
T Consensus       238 ~~~~~~---~~v~--s~~fs~d~~~la~g~-d~~~~~~~~  271 (371)
T d1k8kc_         238 TLASET---LPLL--AVTFITESSLVAAGH-DCFPVLFTY  271 (371)
T ss_dssp             EEECSS---CCEE--EEEEEETTEEEEEET-TSSCEEEEE
T ss_pred             eeeccc---ccce--eeeecCCCCEEEEEc-CCceEEEEe
Confidence            665322   2233  478999998888766 666666544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-35  Score=285.56  Aligned_cols=286  Identities=14%  Similarity=0.176  Sum_probs=220.8

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEe-ccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLF-RTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ..++++|.+.|++++|+|  ++++|++|+.||+|++||+.+    +..+..+ ..|...|++++|+|++ . +++++.|+
T Consensus         5 ~~~~~GH~~~V~~l~~s~--dg~~l~s~s~Dg~v~vWd~~~----~~~~~~~~~~h~~~v~~v~~~~~g-~-~~~~~~d~   76 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSA--DGKTLFSADAEGHINSWDIST----GISNRVFPDVHATMITGIKTTSKG-D-LFTVSWDD   76 (299)
T ss_dssp             EEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT----CCEEECSSCSCSSCEEEEEECTTS-C-EEEEETTT
T ss_pred             ceEcCCCCCCcEEEEECC--CCCEEEEEcCCCeEEEEECCC----CcEEEEEcCCCCCcEEEEEeeccc-e-eeccccee
Confidence            356799999999999999  999999999999999999987    5666666 4789999999999987 4 67778899


Q ss_pred             eEEEEECCCCeE----EEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCC
Q 009380          306 LIRLMDAEKEVF----DLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPN  381 (536)
Q Consensus       306 ~I~vwd~~~~~~----~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~  381 (536)
                      .+++|+......    .....+...+.+++|++++ .++++++ ++.+.+|+...  ....  .....+.+++|+|++ +
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~~-~~~i~~~~~~~--~~~~--~~~~~~~~~~~s~~~-~  149 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAAC-YKHIAIYSHGK--LTEV--PISYNSSCVALSNDK-Q  149 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEEE-SSEEEEEETTE--EEEE--ECSSCEEEEEECTTS-C
T ss_pred             eEEEeccCCcccccccccccccccccccccccccc-ccccccc-ccccccccccc--cccc--ccccccccccccccc-c
Confidence            999999875432    2233467789999999998 5555554 56899998542  2222  245668899999977 7


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      +|++|+.||.|++||+++..   ........|...|++++|+|++.+|++++.|+.|++||+.+................
T Consensus       150 ~l~~g~~dg~i~~~d~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         150 FVAVGGQDSKVHVYKLSGAS---VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             EEEEEETTSEEEEEEEETTE---EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             cccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999998742   122344578999999999999999999999999999999876544433222222233


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccce--eccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVA--TLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~--~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +..  ++|+|++.+|++|+.|+.|++||+.++....  ....++...+ ..+.+.+  +.+|++|+.||.|+|||+
T Consensus       227 v~~--l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         227 VAC--VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV-NSVIWLN--ETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             EEE--EEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCE-EEEEEEE--TTEEEEEETTSCEEEEEC
T ss_pred             ccc--ccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcE-EEEEECC--CCEEEEEeCCCEEEEEec
Confidence            443  6799999999999999999999998765433  2333444444 3344443  589999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-35  Score=288.80  Aligned_cols=321  Identities=17%  Similarity=0.149  Sum_probs=241.7

Q ss_pred             cceecccccceeeeecCCCCcccccccccccccccccccceEEecccccC-ccccccccCCceEEEEEEecCCccEEEEE
Q 009380          176 GFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK-PENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       176 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~-~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      +.+|+||.+.|..| +++++++++          +++.||.|+|||+... ....+++|.+.|++++|+|  + .+|++|
T Consensus         5 ~~tL~GH~~~vitc-~~~~~~~l~----------tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~--~-~~l~s~   70 (355)
T d1nexb2           5 RTTLRGHMTSVITC-LQFEDNYVI----------TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--G-GILVSG   70 (355)
T ss_dssp             EEEEECCSSSCEEE-EEEETTEEE----------EEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET--T-TEEEEE
T ss_pred             cEEECCcCCCcEEE-EEECCCEEE----------EEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC--C-CEEEEE
Confidence            45789999987443 445677777          5688999999998543 3445678999999999998  5 489999


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCC--CCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-----------
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHL--GPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-----------  321 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~--~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-----------  321 (536)
                      +.||.|++|++..    .........+.  ..+....+.+++ .++++++.|+.|++||+.+.......           
T Consensus        71 s~D~~i~iw~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  145 (355)
T d1nexb2          71 STDRTVRVWDIKK----GCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  145 (355)
T ss_dssp             ETTCCEEEEETTT----TEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEES
T ss_pred             ecccccccccccc----ccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceecccee
Confidence            9999999999986    44444444333  334556677777 89999999999999999865432111           


Q ss_pred             -------------cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeC
Q 009380          322 -------------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSST  388 (536)
Q Consensus       322 -------------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~  388 (536)
                                   .+...+.  .+.+++ ++++++..|+.|++||+++++.+..+.++...+.++.|+|++ .++++++.
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~--~~~~~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  221 (355)
T d1nexb2         146 TPEENPYFVGVLRGHMASVR--TVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASM  221 (355)
T ss_dssp             CTTTCTTEEEEEECCSSCEE--EEEEET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEET
T ss_pred             ccccccceeeeeeecccccc--cccccc-ceeeeecccceeeeeecccccceeeeeccccccccccccccc-eeeecccc
Confidence                         1222232  233444 789999999999999999999998888999999999999977 79999999


Q ss_pred             CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380          389 DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       389 dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      |+.|++||++++.    ....+.+|...|.+++|+  +++|++++.||.|++||+.+........+....    ..  ..
T Consensus       222 d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~--~~  289 (355)
T d1nexb2         222 DTTIRIWDLENGE----LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLS----AI--TT  289 (355)
T ss_dssp             TSCEEEEETTTCC----EEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEEECTTCC----CC--CE
T ss_pred             cceEEeeeccccc----cccccccccccccccccc--cceeeeeecccccccccccccceecccccCCce----EE--EE
Confidence            9999999999853    555666899999999997  468999999999999999887655444332211    11  34


Q ss_pred             EcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          469 WGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      +++++.+|++|+ |+.|+|||+.+++++.....+|...+ ..++|+| + .++++++.||.++||.+
T Consensus       290 ~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V-~~v~~~~-~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         290 FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQI-WSVNFKG-K-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEE-EEEEEET-T-EEEEEEESSSCEEEEEE
T ss_pred             EcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCE-EEEEEcC-C-eEEEEEECCCcEEEEEE
Confidence            677887777665 89999999999988865433344444 4678887 3 57888999999877754

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-34  Score=280.99  Aligned_cols=294  Identities=18%  Similarity=0.159  Sum_probs=246.5

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cccccccCCceEEEEEEecCCccEE
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-ENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      +..+.+|+||.+.|.++.|+|++.+++          +++.||.|++||+.... ......|...|++++|+|  ++.++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~----------sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l  112 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLV----------SASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP--SGNYV  112 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEE----------EEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT--TSSEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEE----------EEECCCceeeeecccceeEEEEecccccEEeeEeec--cceee
Confidence            345678999999999999999999998          45889999999985432 334567899999999999  99999


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE-EeecCCCceeEE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD-LVYSSEYAVFSL  330 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~-~~~~~~~~i~~l  330 (536)
                      ++|+.|+.+.+|+.............+.+|...+........  ..+.....|.....+........ ....+...+...
T Consensus       113 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (340)
T d1tbga_         113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL  190 (340)
T ss_dssp             EEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred             eeecccceeecccccccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeee
Confidence            999999999999988755445566778888888777766655  68888999999999998876544 344566788889


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                      .+.+.+ .++++|+.|+.|++||+++++++..+.+|...|++++|+|++ .+|++|+.||.|++||++....  ......
T Consensus       191 ~~~~~~-~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~--~~~~~~  266 (340)
T d1tbga_         191 SLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQE--LMTYSH  266 (340)
T ss_dssp             EECTTS-SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE--EEEECC
T ss_pred             cccccc-ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeeccccc--cccccc
Confidence            998887 899999999999999999999999999999999999999977 7999999999999999987531  011122


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEc
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVIS  489 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d  489 (536)
                      ..+...|.+++|+|++++|++|+.||.|++||+.+++.+..+..+.   ..+.  .++|+|++.+|++|+.||.|+|||
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~---~~V~--~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD---NRVS--CLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---SCEE--EEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC---CCEE--EEEEeCCCCEEEEEccCCEEEEeC
Confidence            3577889999999999999999999999999999998888775221   2343  477999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-33  Score=274.49  Aligned_cols=325  Identities=15%  Similarity=0.164  Sum_probs=253.8

Q ss_pred             ccccceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCccEE
Q 009380          173 ENLGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMV  251 (536)
Q Consensus       173 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l  251 (536)
                      ++...+|+||.+.|.+| ++++|++|+          +++.||.|+|||+.. +....+..|.+.|++++|+|    .+|
T Consensus         6 ~~~~~~l~GH~~~V~s~-~~~~g~~l~----------sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l   70 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVITC-LQFCGNRIV----------SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NII   70 (342)
T ss_dssp             CCCCEEEECSTTSCEEE-EEEETTEEE----------EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEE
T ss_pred             CCcCEEECCcCCceEEE-EEECCCEEE----------EEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Ccc
Confidence            34567899999998654 666788777          568899999999854 34455688999999999987    399


Q ss_pred             EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEE
Q 009380          252 VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLS  331 (536)
Q Consensus       252 ~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~  331 (536)
                      ++|+.|+.+++|+...    .........+...+....+.+   ..++.+..|+.+.+|+..++................
T Consensus        71 ~s~s~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
T d2ovrb2          71 ISGSTDRTLKVWNAET----GECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV  143 (342)
T ss_dssp             EEEETTSCEEEEETTT----TEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred             ccceeccccccccccc----ccceecccccceeEeeeeccc---ccccccccceeEEEeecccccceeeeecccccceee
Confidence            9999999999999986    455555566666666655544   678899999999999999987766665544444433


Q ss_pred             ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380          332 QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      ... . ..+++++.|+.|++||++....+..+.+|...+..+.+.  + .+|++|+.||.|++||++.++    ......
T Consensus       144 ~~~-~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~~----~~~~~~  214 (342)
T d2ovrb2         144 QYD-G-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETGN----CIHTLT  214 (342)
T ss_dssp             EEC-S-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTCC----EEEEEC
T ss_pred             ccc-c-ceeeeecCCCeEEEeecccceeeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeecccce----eeeEec
Confidence            333 3 578999999999999999999999998898887776664  4 689999999999999999853    445566


Q ss_pred             cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .|...+.++.++  +++|++++.|+.|++||+...+....+.........+.    ++.+++.++++|+.||.|+|||+.
T Consensus       215 ~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         215 GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVT----CLQFNKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEE----EEEECSSEEEEEETTSEEEEEETT
T ss_pred             ccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeecee----ecccCCCeeEEEcCCCEEEEEECC
Confidence            888999888776  46899999999999999998877766643332222222    234456799999999999999999


Q ss_pred             ccccceeccC----CceeeeeeeEeecCCCCCEEEEEccCCe----EEEEecC
Q 009380          492 QRRSVATLQS----PYISAIPCRFHAHPHQVGTLAGATGGGQ----VYVWTSD  536 (536)
Q Consensus       492 ~~~~~~~l~~----~~~~~~~~~~~~~p~~~~~lasgs~Dg~----v~iW~~d  536 (536)
                      +++.+..+..    .|...+ ..++|+| ++.+|++|+.||+    |++||+|
T Consensus       289 tg~~i~~~~~~~~~~~~~~v-~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVV-WRIRASN-TKLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEE-EEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCCEEEEEecccCCCCCCCE-EEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence            9998887742    233333 5788998 5689999999985    9999986

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.5e-34  Score=275.45  Aligned_cols=292  Identities=10%  Similarity=0.118  Sum_probs=226.9

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCc-cc-cccccCCceEEEEEEecCCccEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKP-EN-IARIMPGRITQMKFLPCSDVRMVV  252 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~-~~-~~~~~~~~I~~v~~~p~~~~~~l~  252 (536)
                      +..++.||.+.|.++.|+|++++++          +++.||.|++||+.... .. ....|.+.|++++|+|  ++.++ 
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~----------s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~--~g~~~-   70 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLF----------SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS--KGDLF-   70 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEE----------EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT--TSCEE-
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEE----------EEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec--cceee-
Confidence            4568999999999999999999988          45889999999985432 22 2357899999999999  88654 


Q ss_pred             EEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEe
Q 009380          253 AGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQ  332 (536)
Q Consensus       253 tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~  332 (536)
                      +++.|+.+++|+...... .........|...+.+++|++++ .++++++ ++.+.+|+.....   .......+.+++|
T Consensus        71 ~~~~d~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~  144 (299)
T d1nr0a2          71 TVSWDDHLKVVPAGGSGV-DSSKAVANKLSSQPLGLAVSADG-DIAVAAC-YKHIAIYSHGKLT---EVPISYNSSCVAL  144 (299)
T ss_dssp             EEETTTEEEEECSSSSSS-CTTSCCEEECSSCEEEEEECTTS-SCEEEEE-SSEEEEEETTEEE---EEECSSCEEEEEE
T ss_pred             cccceeeEEEeccCCccc-ccccccccccccccccccccccc-ccccccc-ccccccccccccc---ccccccccccccc
Confidence            556789999999875322 22233345678889999999998 6666554 6789999965432   2234456889999


Q ss_pred             cCCCCCEEEEEECCCeEEEEECCCCccce-eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380          333 QPNNVNTLYFGEGQGGLNIWDVRSRKSAT-EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       333 ~~~~~~~l~~g~~dg~i~i~d~~~~~~~~-~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      +|++ ++|++|+.||.|.+||+++++... ....|...|++++|+|++ .+|++++.|+.|++||+.++... .......
T Consensus       145 s~~~-~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~-~~~~~~~  221 (299)
T d1nr0a2         145 SNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFEL-AHTNSWT  221 (299)
T ss_dssp             CTTS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEE-SCCCCCC
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc-ccccccc
Confidence            9998 899999999999999998877543 334789999999999987 79999999999999999875311 1223344


Q ss_pred             cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCC
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      .|...|++++|+|++.+|++++.|+.|++||+.+......+.........+.   ..+.+++.+|++|+.|+.|++||+.
T Consensus       222 ~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN---SVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEE---EEEEEETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEE---EEEECCCCEEEEEeCCCEEEEEecc
Confidence            6899999999999999999999999999999998776655543333333333   3345667899999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.8e-34  Score=282.87  Aligned_cols=239  Identities=15%  Similarity=0.060  Sum_probs=197.4

Q ss_pred             cceeeeecCCCCcccccccccccccccccccceEEecccccC---ccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          184 NGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      +.|.|+.|+|+|+.++.          ++.+|.|+||+....   ....+++|.+.|++++|+|  ++++|++|+.|++|
T Consensus         8 ~pIt~~~~s~dg~~la~----------~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp--~~~~l~s~s~D~~i   75 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAI----------CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP--DSNRIVTCGTDRNA   75 (371)
T ss_dssp             SCCCEEEECTTSSEEEE----------ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET--TTTEEEEEETTSCE
T ss_pred             CCeEEEEECCCCCEEEE----------EeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC--CCCEEEEEECCCeE
Confidence            67999999999999984          467889999998543   2344578999999999999  99999999999999


Q ss_pred             EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeE-----EEeecCCCceeEEEecCC
Q 009380          261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVF-----DLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~-----~~~~~~~~~i~~l~~~~~  335 (536)
                      +|||+.+..  ......+.+|...|.+++|+|++ +.|++++.|++|++|+++....     .....|...|.+++|+|+
T Consensus        76 ~vWd~~~~~--~~~~~~~~~~~~~v~~i~~~p~~-~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          76 YVWTLKGRT--WKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             EEEEEETTE--EEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             EEEeecccc--ccccccccccccccccccccccc-ccceeecccCcceeeeeeccccccccccccccccccccccccccc
Confidence            999998632  23455677899999999999998 9999999999999999876432     122357789999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCc------------------cceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeC
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRK------------------SATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDL  397 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~------------------~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl  397 (536)
                      + .+|++|+.||.|++||+....                  .+.....|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus       153 ~-~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~  230 (371)
T d1k8kc_         153 S-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADA  230 (371)
T ss_dssp             S-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEG
T ss_pred             c-cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEee
Confidence            8 899999999999999986532                  234445788999999999987 78999999999999999


Q ss_pred             CCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 009380          398 RSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGV  444 (536)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~  444 (536)
                      ..+.    ....+..|..+|.+++|+|++.+|++| .|+.+++|...
T Consensus       231 ~~~~----~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~  272 (371)
T d1k8kc_         231 DKKM----AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYD  272 (371)
T ss_dssp             GGTT----EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEE
T ss_pred             eccc----ceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEee
Confidence            8853    455666899999999999999877654 57777776543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-33  Score=273.95  Aligned_cols=292  Identities=13%  Similarity=0.072  Sum_probs=221.6

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCC-cEEEEECCCCCCCCCceEEeccCC-CCEEEEEEecCC-CCEEEEEECCCeEEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLG-NITFWNLDSQQDEDNGIYLFRTHL-GPISGIVTQQYC-LSKIFTSCYDGLIRLM  310 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg-~v~iwd~~~~~~~~~~~~~~~~h~-~~V~~l~~~~~~-~~~l~s~s~dg~I~vw  310 (536)
                      .+.+++++|+|  +++.|+.++.+. .|+.|+...  .....+..+.+|. ..|++++|+|+. ..+|++|+.||+|++|
T Consensus        17 ~~~~t~l~~~~--~~~~la~~~~~~~~i~~~~~~~--~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iW   92 (325)
T d1pgua1          17 RNFTTHLSYDP--TTNAIAYPCGKSAFVRCLDDGD--SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   92 (325)
T ss_dssp             TTCCCCCEEET--TTTEEEEEETTEEEEEECCSSC--CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCCeEEEEECC--CCCEEEEEeCCCEEEEEEeCCC--CCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEe
Confidence            34578999999  899999886543 245555433  2246677788874 679999999842 2799999999999999


Q ss_pred             ECCCCeE---------EEeecCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380          311 DAEKEVF---------DLVYSSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       311 d~~~~~~---------~~~~~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~  379 (536)
                      |+..+..         .....+..+|.+++|++++ ..+++++.  ++.+.+|+..+++.+..+.+|...|++++|+|++
T Consensus        93 d~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  171 (325)
T d1pgua1          93 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR  171 (325)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS
T ss_pred             eecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccccceeeeecccccccccccccc
Confidence            9865321         1233577899999999998 67666654  6789999999999999999999999999999998


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCC
Q 009380          380 PNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPS-GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQT  458 (536)
Q Consensus       380 ~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~-g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~  458 (536)
                      +.++++++.|+.|++||+...+.. ........|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+......
T Consensus       172 ~~~~~~~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~  250 (325)
T d1pgua1         172 PMRSMTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP  250 (325)
T ss_dssp             SCEEEEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred             cceEEEeecccccccccccccccc-eecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccc
Confidence            778999999999999998764310 011122357888999999996 688999999999999999999887777532211


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCcee--eeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYIS--AIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~--~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .. -..+.+.| ++|++|++++.|+.|+|||+.+++++..+..+...  .....+.+.+  ..+|++|+.||.|+|||+
T Consensus       251 v~-~~~~s~~~-~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         251 VQ-GGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CC-SCEEEEEE-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             cc-cceeeeec-cCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECC--CCEEEEEECCCEEEEEEC
Confidence            11 11222333 68899999999999999999999988877654433  2223444443  368999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-32  Score=265.21  Aligned_cols=290  Identities=12%  Similarity=0.068  Sum_probs=220.6

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccC---cccccccc-CCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLK---PENIARIM-PGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~---~~~~~~~~-~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      .+.++.|+|+++.++..         .+....++.|+....   ......+| ...|++++|+|..++.+|++|+.||+|
T Consensus        19 ~~t~l~~~~~~~~la~~---------~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i   89 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYP---------CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV   89 (325)
T ss_dssp             CCCCCEEETTTTEEEEE---------ETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             CeEEEEECCCCCEEEEE---------eCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCE
Confidence            45678899999988854         122234566664222   22233456 568999999997678899999999999


Q ss_pred             EEEECCCCCCC----CCceEEeccCCCCEEEEEEecCCCCEEEEEEC--CCeEEEEECCCCeEEE-eecCCCceeEEEec
Q 009380          261 TFWNLDSQQDE----DNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY--DGLIRLMDAEKEVFDL-VYSSEYAVFSLSQQ  333 (536)
Q Consensus       261 ~iwd~~~~~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~--dg~I~vwd~~~~~~~~-~~~~~~~i~~l~~~  333 (536)
                      +|||+......    ......+..|.++|.+++|++++ .+|++++.  ++.+.+|+.+++.... +.+|...|.+++|+
T Consensus        90 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  168 (325)
T d1pgua1          90 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK  168 (325)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred             EEeeecCCcceeeeecccccccccccCcEEEEEECCCC-CccceeeccccceEEEEeecccccceeeeeccccccccccc
Confidence            99998753211    11123456789999999999998 88877764  6789999999876554 45688999999999


Q ss_pred             CCCCCEEEEEECCCeEEEEECCCCccceeEe---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380          334 PNNVNTLYFGEGQGGLNIWDVRSRKSATEWL---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       334 ~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                      |+++.++++++.||.|++||+...+....+.   .|...|.+++|+|++..+|++++.||.|++||+++++    ....+
T Consensus       169 ~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~----~~~~l  244 (325)
T d1pgua1         169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE----FLKYI  244 (325)
T ss_dssp             SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----EEEEC
T ss_pred             ccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc----ccccc
Confidence            9987778899999999999998877655543   5778899999999877899999999999999998864    34445


Q ss_pred             ecccCceeEEEEc---cCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380          411 LSHKRAVHSAYFS---PSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV  487 (536)
Q Consensus       411 ~~~~~~v~~l~~s---p~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v  487 (536)
                      .+|...+.++.|+   |+|++|++++.|+.|+|||+.+++.+..+...... .....+.+.|.++ .+|++|+.||.|+|
T Consensus       245 ~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~l~s~s~dg~i~v  322 (325)
T d1pgua1         245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ-LGNQQVGVVATGN-GRIISLSLDGTLNF  322 (325)
T ss_dssp             CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC-GGGCEEEEEEEET-TEEEEEETTSCEEE
T ss_pred             cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc-ccCeEEEEEECCC-CEEEEEECCCEEEE
Confidence            5677777666665   68999999999999999999998888776533221 1122333445544 47899999999999


Q ss_pred             EcC
Q 009380          488 ISP  490 (536)
Q Consensus       488 ~d~  490 (536)
                      ||+
T Consensus       323 wdl  325 (325)
T d1pgua1         323 YEL  325 (325)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-30  Score=243.69  Aligned_cols=273  Identities=15%  Similarity=0.233  Sum_probs=213.7

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeE
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLI  307 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I  307 (536)
                      .....|...|+|+.  +  ++++||+|+.||+|+|||+.+    ...+..+.+|.+.|.+++|+  + ++|++|+.|+.|
T Consensus         9 ~~~~~~~~~V~c~~--~--d~~~l~sgs~Dg~i~vWd~~~----~~~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i   77 (293)
T d1p22a2           9 HCRSETSKGVYCLQ--Y--DDQKIVSGLRDNTIKIWDKNT----LECKRILTGHTGSVLCLQYD--E-RVIITGSSDSTV   77 (293)
T ss_dssp             ECCCSSCCCEEEEE--C--CSSEEEEEESSSCEEEEESSS----CCEEEEECCCSSCEEEEECC--S-SEEEEEETTSCE
T ss_pred             eccCCCCCCEEEEE--E--cCCEEEEEeCCCeEEEEECCC----CcEEEEEecCCCCEeeeecc--c-ceeecccccccc
Confidence            33456778899865  4  789999999999999999987    78899999999999999874  4 899999999999


Q ss_pred             EEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc---ceeEeccCCCeEEEEEecCCCCEEE
Q 009380          308 RLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS---ATEWLLHEARINTIDFNPRNPNIMA  384 (536)
Q Consensus       308 ~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~---~~~~~~h~~~i~~i~~~p~~~~~l~  384 (536)
                      ++|++..+................. +.. ..++++..++.+.+||......   ...+..|...|..+.+.+   ..++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~  152 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLR-FNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIV  152 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEE-CCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEE
T ss_pred             ccccccccccccccccccccccccc-ccc-cceeecccccceeEeeccccccccccccccccccccccceecc---cccc
Confidence            9999999877666554443333333 333 5899999999999999987654   344457888898888875   5788


Q ss_pred             EEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeee
Q 009380          385 TSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISS  464 (536)
Q Consensus       385 s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  464 (536)
                      +++.|+.|++||+++++    ....+.++...+..+.++  +.++++++.|+.|++||+++...+........   .+  
T Consensus       153 ~~s~d~~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v--  221 (293)
T d1p22a2         153 SASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LV--  221 (293)
T ss_dssp             EEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS---CE--
T ss_pred             cccCCCceeeecCCCCc----EEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce---ee--
Confidence            99999999999999853    445566788888887775  56899999999999999998877766543221   12  


Q ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEcCCccc---------cceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEe
Q 009380          465 FRAIWGWDDSCVFIGNMTRTVEVISPAQRR---------SVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       465 ~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~---------~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~  534 (536)
                        ..+++++.+|++|+.||.|++||+.+..         .+..+.+|...+  ..++|+   +.+|++|+.||.|+|||
T Consensus       222 --~~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V--~~v~~d---~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         222 --RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV--FRLQFD---EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --EEEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC--CCEEEC---SSCEEECCSSSEEEEEC
T ss_pred             --eeccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCE--EEEEEc---CCEEEEEecCCEEEEeC
Confidence              2356788999999999999999975532         345555554443  356775   47899999999999998

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-30  Score=249.88  Aligned_cols=280  Identities=15%  Similarity=0.173  Sum_probs=209.5

Q ss_pred             cccccccCCce-EEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          227 ENIARIMPGRI-TQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       227 ~~~~~~~~~~I-~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      ...+++|.+.| +|+  ++  ++++|++|+.||+|+|||+.+    ...+..+.+|.++|.+++|+|+  ++|++|+.|+
T Consensus         5 ~~tL~GH~~~vitc~--~~--~~~~l~tgs~Dg~i~vWd~~~----~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~   74 (355)
T d1nexb2           5 RTTLRGHMTSVITCL--QF--EDNYVITGADDKMIRVYDSIN----KKFLLQLSGHDGGVWALKYAHG--GILVSGSTDR   74 (355)
T ss_dssp             EEEEECCSSSCEEEE--EE--ETTEEEEEETTTEEEEEETTT----TEEEEEEECCSSCEEEEEEETT--TEEEEEETTC
T ss_pred             cEEECCcCCCcEEEE--EE--CCCEEEEEeCCCeEEEEECCC----CcEEEEEECCCCCEEEEEEcCC--CEEEEEeccc
Confidence            44578998876 555  45  668999999999999999987    7889999999999999999985  6899999999


Q ss_pred             eEEEEECCCCeEEEeecC---CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcccee--------------------
Q 009380          306 LIRLMDAEKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATE--------------------  362 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~--------------------  362 (536)
                      +|++|++...........   ...+..+.+.+++ ..+++++.|+.|++||+++...+..                    
T Consensus        75 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d1nexb2          75 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  153 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred             cccccccccccccccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence            999999998876554432   2344556677776 7899999999999999987643221                    


Q ss_pred             ---EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380          363 ---WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG  439 (536)
Q Consensus       363 ---~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~  439 (536)
                         ...|...+...  .+++ ++++++..|+.|++||+++++    .......+...+.++.|+|++.++++++.|+.|+
T Consensus       154 ~~~~~~~~~~v~~~--~~~~-~~~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  226 (355)
T d1nexb2         154 VGVLRGHMASVRTV--SGHG-NIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIYSTIYDHERKRCISASMDTTIR  226 (355)
T ss_dssp             EEEEECCSSCEEEE--EEET-TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             eeeeeecccccccc--cccc-ceeeeecccceeeeeeccccc----ceeeeeccccccccccccccceeeecccccceEE
Confidence               11233444433  3434 689999999999999998853    3444557888999999999999999999999999


Q ss_pred             EEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCC
Q 009380          440 IWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG  519 (536)
Q Consensus       440 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~  519 (536)
                      +||+.++.....+....   ..+..  +.|+  +++|++|+.||.|++||+.++......  |+.... ....++| ++.
T Consensus       227 i~d~~~~~~~~~~~~h~---~~v~~--~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~-~~~~~~~-~~~  295 (355)
T d1nexb2         227 IWDLENGELMYTLQGHT---ALVGL--LRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLS-AITTFYV-SDN  295 (355)
T ss_dssp             EEETTTCCEEEEECCCS---SCCCE--EEEC--SSEEEEECTTSEEEEEETTTCCEEEEE--ECTTCC-CCCEEEE-CSS
T ss_pred             eeecccccccccccccc---ccccc--cccc--cceeeeeecccccccccccccceeccc--ccCCce-EEEEEcC-CCC
Confidence            99999988777764322   12333  4454  579999999999999999887654433  333333 2233444 445


Q ss_pred             EEEEEccCCeEEEEecC
Q 009380          520 TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       520 ~lasgs~Dg~v~iW~~d  536 (536)
                      +|++| .||.|+|||++
T Consensus       296 ~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         296 ILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             EEEEE-ETTEEEEEETT
T ss_pred             EEEEE-eCCEEEEEECC
Confidence            55555 58999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.6e-29  Score=245.51  Aligned_cols=281  Identities=15%  Similarity=0.207  Sum_probs=216.0

Q ss_pred             cCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC
Q 009380          224 LKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY  303 (536)
Q Consensus       224 ~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~  303 (536)
                      .++..++++|.+.|.+ ++++  +|++|++|+.||+|+|||+.+    ++.+..+.+|...|.+++|++   ++|++++.
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~--~g~~l~sgs~Dg~i~vWd~~~----~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~   75 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQF--CGNRIVSGSDDNTLKVWSAVT----GKCLRTLVGHTGGVWSSQMRD---NIIISGST   75 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEE--ETTEEEEEETTSCEEEEETTT----CCEEEECCCCSSCEEEEEEET---TEEEEEET
T ss_pred             CCcCEEECCcCCceEE-EEEE--CCCEEEEEeCCCeEEEEECCC----CCEEEEEeCCCCCEEEEEeCC---Ccccccee
Confidence            4556778999999876 4777  889999999999999999987    788999999999999999986   58999999


Q ss_pred             CCeEEEEECCCCeEEEeec-CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCE
Q 009380          304 DGLIRLMDAEKEVFDLVYS-SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNI  382 (536)
Q Consensus       304 dg~I~vwd~~~~~~~~~~~-~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~  382 (536)
                      |+.+++|+........... +...+......+   ..+..+..|+.+.+|+..+++....+..+........  +.. ..
T Consensus        76 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~  149 (342)
T d2ovrb2          76 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ--YDG-RR  149 (342)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE--ECS-SC
T ss_pred             cccccccccccccceecccccceeEeeeeccc---ccccccccceeEEEeecccccceeeeecccccceeec--ccc-ce
Confidence            9999999998876655444 334455544443   5788999999999999999988777765544443333  323 57


Q ss_pred             EEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCcee
Q 009380          383 MATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWI  462 (536)
Q Consensus       383 l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  462 (536)
                      +++++.|+.|++||++...    ....+.+|...+..+.  +++.+|++++.||.|++||++..+.+..+.....   .+
T Consensus       150 ~~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~---~v  220 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETET----CLHTLQGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS---LT  220 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTE----EEEEECCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCS---CE
T ss_pred             eeeecCCCeEEEeecccce----eeEEEcCccccccccc--CCCCEEEEEeCCCeEEEeecccceeeeEeccccc---ce
Confidence            8899999999999998743    3444556766665554  4688999999999999999998887766643221   22


Q ss_pred             eeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceee-eeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          463 SSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISA-IPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       463 ~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~-~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      .    ++++++++|++|+.|+.|++||....+....+..+.... ....+.++   ++++++|+.||.|+|||++
T Consensus       221 ~----~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         221 S----GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             E----EEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             e----EEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence            2    234456799999999999999999988777776543221 22345564   4799999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-30  Score=253.00  Aligned_cols=298  Identities=10%  Similarity=0.065  Sum_probs=214.3

Q ss_pred             cccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCe
Q 009380          227 ENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGL  306 (536)
Q Consensus       227 ~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~  306 (536)
                      .++.+.|.+.|++|+|+|  ++++||+|+.||+|+|||+..... ...+....+|..+|.+++|+|+++.+|++|+.||.
T Consensus         4 v~~~~~h~d~I~~l~fsp--~~~~L~s~s~Dg~v~iwd~~~~~~-~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           4 VQIEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             EECSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTT-EEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             EEcCCCCCCCEEEEEEeC--CCCEEEEEECCCeEEEEEccCCCc-ceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            346789999999999999  999999999999999999986321 12233444799999999999987578999999999


Q ss_pred             EEEEECCCCeEEEeec-CCC-ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe----c--cCCCeEEEEEecC
Q 009380          307 IRLMDAEKEVFDLVYS-SEY-AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL----L--HEARINTIDFNPR  378 (536)
Q Consensus       307 I~vwd~~~~~~~~~~~-~~~-~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----~--h~~~i~~i~~~p~  378 (536)
                      |++|++.......... +.. ......+.++. ..+++++.++.+++||++.+.......    .  .......+.+.+.
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN  159 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred             eeeeeccccccccccccccccccccccccccc-ccccccccccccceeeccccccceeeecccccccccceeeeeeeecc
Confidence            9999998765544332 333 33344444444 799999999999999998665433332    1  1223445666665


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCcce------E
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSP-SGSSLATTSFDDTIGIWSGVNFENTS------M  451 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp-~g~~l~t~s~dg~I~iwd~~~~~~~~------~  451 (536)
                      + ..+++++.|+.|++||++...... .......+...+.+..+.+ ++..+++++.||.+.+|+........      .
T Consensus       160 ~-~~~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~  237 (342)
T d1yfqa_         160 S-SRLIVGMNNSQVQWFRLPLCEDDN-GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             S-SEEEEEESTTEEEEEESSCCTTCC-CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             C-CceeeecCCCcEEEEecccCcccc-eeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccce
Confidence            5 689999999999999998764221 2222334555666666665 67899999999999999976443221      1


Q ss_pred             Ee----ccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccC
Q 009380          452 IH----HNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGG  527 (536)
Q Consensus       452 ~~----~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~D  527 (536)
                      +.    .....+.......++|+|++.+|++|+.||.|+|||+.+++.+.++..++...+ +  +++| ++++|++++.|
T Consensus       238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~-~--~~s~-~~~~l~~a~sd  313 (342)
T d1yfqa_         238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV-V--KIAC-SDNILCLATSD  313 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEE-E--EEEE-CSSEEEEEEEC
T ss_pred             eeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEE-E--EEEe-CCCEEEEEEcC
Confidence            11    011112222233478999999999999999999999999999988876554333 3  4444 45899999988


Q ss_pred             CeEEEEe
Q 009380          528 GQVYVWT  534 (536)
Q Consensus       528 g~v~iW~  534 (536)
                      +.+++|.
T Consensus       314 d~~~~~~  320 (342)
T d1yfqa_         314 DTFKTNA  320 (342)
T ss_dssp             THHHHCS
T ss_pred             CcEEEee
Confidence            8777765

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.9e-30  Score=244.21  Aligned_cols=269  Identities=13%  Similarity=0.125  Sum_probs=202.9

Q ss_pred             ccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC
Q 009380          226 PENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       226 ~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      +...+++|.++|++++|+|      |++|+.||+|++||+.+         ....|...|.++.|+++  ..+++++.|+
T Consensus         5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~---------~~~~h~~~V~~~~~~~~--~~~~s~s~D~   67 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSS---------MHQDHSNLIVSLDNSKA--QEYSSISWDD   67 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTE---------EECCCCSCEEEEECCST--TCCEEEETTT
T ss_pred             eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCC---------CCCCCCCCEEEEEecCC--CeEEEEeecc
Confidence            4456789999999999976      89999999999999875         23579999999999875  5789999999


Q ss_pred             eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          306 LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      +|++|++....      ....+.++++++++  .+++.+.++.+.+|+..+++.+..+.. ...+.  ++++++ ..+++
T Consensus        68 ~v~~w~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~-~~~~v  135 (287)
T d1pgua2          68 TLKVNGITKHE------FGSQPKVASANNDG--FTAVLTNDDDLLILQSFTGDIIKSVRL-NSPGS--AVSLSQ-NYVAV  135 (287)
T ss_dssp             EEEETTEEEEE------CSSCEEEEEECSSS--EEEEEETTSEEEEEETTTCCEEEEEEC-SSCEE--EEEECS-SEEEE
T ss_pred             ccccccccccc------cccceeeeeeccCC--ceEEEeecccceeeeccceeeeeeccc-cceee--eeeccC-cceee
Confidence            99999976432      34567788888876  555566777899999999988877763 34444  456655 45666


Q ss_pred             EeCC-CcEEEEeCCCCCCCCCCccee-ecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          386 SSTD-GTACIWDLRSMATDKPEPMKV-LSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       386 ~s~d-g~i~iwdl~~~~~~~~~~~~~-~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      ++.+ +.|++|++....    ..... ..|...+++++|+|++.+|++++.||.|++||+.++.......  ......+.
T Consensus       136 ~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~~h~~~v~  209 (287)
T d1pgua2         136 GLEEGNTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW--AFRTSKIN  209 (287)
T ss_dssp             EETTTSCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS--CCCSSCEE
T ss_pred             eccccceeeeeeccccc----eeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccc--cccccccc
Confidence            6655 579999987642    22222 2578899999999999999999999999999998776543221  11112233


Q ss_pred             eeEEEEcC----------CCCEEEEEcCCCcEEEEcCCcc-ccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEE
Q 009380          464 SFRAIWGW----------DDSCVFIGNMTRTVEVISPAQR-RSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYV  532 (536)
Q Consensus       464 ~~~~~~s~----------~g~~l~~gs~dg~I~v~d~~~~-~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~i  532 (536)
                      .  +.|+|          ++.+|++|+.|+.|+|||+..+ +.+..+.+|... + ..+.|+| + ..|++++.||.|++
T Consensus       210 ~--~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~-V-~~v~~~~-~-~~l~s~g~D~~v~i  283 (287)
T d1pgua2         210 A--ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG-V-NNLLWET-P-STLVSSGADACIKR  283 (287)
T ss_dssp             E--EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC-E-EEEEEEE-T-TEEEEEETTSCEEE
T ss_pred             e--eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC-e-EEEEECC-C-CEEEEEECCCeEEE
Confidence            3  55654          5678999999999999999774 455555555444 4 4678887 4 57999999999999


Q ss_pred             Eec
Q 009380          533 WTS  535 (536)
Q Consensus       533 W~~  535 (536)
                      |++
T Consensus       284 W~i  286 (287)
T d1pgua2         284 WNV  286 (287)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2e-29  Score=244.28  Aligned_cols=294  Identities=13%  Similarity=0.078  Sum_probs=217.9

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc----ccccccCCceEEEEEEecCCccE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE----NIARIMPGRITQMKFLPCSDVRM  250 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~----~~~~~~~~~I~~v~~~p~~~~~~  250 (536)
                      +..+..+|.+.|.++.|+|++++|+          +++.||.|+||++.....    .....|.+.|++++|+|. ++.+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~----------s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~-~~~~   71 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLL----------ITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQ   71 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEE----------EEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEE----------EEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC-CCCE
Confidence            3456789999999999999999998          457899999999854322    122358999999999993 3568


Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCE-EEEEEecCCCCEEEEEECCCeEEEEECCCCeEE----Eee-c--
Q 009380          251 VVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPI-SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD----LVY-S--  322 (536)
Q Consensus       251 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V-~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~----~~~-~--  322 (536)
                      |++|+.||.|++|++..    .........+...+ ....+.++. ..+++++.|+.+++||++.....    ... .  
T Consensus        72 l~sg~~d~~v~~w~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~  146 (342)
T d1yfqa_          72 IYVGTVQGEILKVDLIG----SPSFQALTNNEANLGICRICKYGD-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             EEEEETTSCEEEECSSS----SSSEEECBSCCCCSCEEEEEEETT-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             EEEcccccceeeeeccc----cccccccccccccccccccccccc-ccccccccccccceeeccccccceeeeccccccc
Confidence            99999999999999987    44455555444444 444455555 89999999999999998653211    111 1  


Q ss_pred             CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE---eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCC
Q 009380          323 SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW---LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRS  399 (536)
Q Consensus       323 ~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~---~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~  399 (536)
                      .......+.+.+.+ +.+++++.||.|++||++........   ..+...+.++.+.+.+...+++++.||.+.+|++..
T Consensus       147 ~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~  225 (342)
T d1yfqa_         147 TKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD  225 (342)
T ss_dssp             SSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCT
T ss_pred             ccceeeeeeeeccC-CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecC
Confidence            22344555666666 78999999999999999887654333   245566777777776668999999999999999876


Q ss_pred             CCCCCC-----------CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEE
Q 009380          400 MATDKP-----------EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAI  468 (536)
Q Consensus       400 ~~~~~~-----------~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (536)
                      ......           .......|...|++++|+|++.+|++|+.||.|+|||+.+.+.+..+.....    ...  ++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~----~~~--~~  299 (342)
T d1yfqa_         226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE----DSV--VK  299 (342)
T ss_dssp             TCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS----SEE--EE
T ss_pred             CcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC----CEE--EE
Confidence            432111           0111234677899999999999999999999999999999887776643221    222  55


Q ss_pred             EcCCCCEEEEEcCCCcEEEEcCC
Q 009380          469 WGWDDSCVFIGNMTRTVEVISPA  491 (536)
Q Consensus       469 ~s~~g~~l~~gs~dg~I~v~d~~  491 (536)
                      |+|++++|++++.|+.+++|...
T Consensus       300 ~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         300 IACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEECSSEEEEEEECTHHHHCSSS
T ss_pred             EEeCCCEEEEEEcCCcEEEeeee
Confidence            78899999999999888887653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-28  Score=246.68  Aligned_cols=301  Identities=14%  Similarity=0.142  Sum_probs=210.4

Q ss_pred             ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCC--CceEEeccCCCCEEEEEEec------CCCCEEE
Q 009380          228 NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDED--NGIYLFRTHLGPISGIVTQQ------YCLSKIF  299 (536)
Q Consensus       228 ~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~--~~~~~~~~h~~~V~~l~~~~------~~~~~l~  299 (536)
                      .+.++|.+.|+++++++    ++|++|+.|++|+|||........  ........|...+..+....      ....+++
T Consensus         8 ~~~~~H~~~I~~v~~~~----~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             EESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC----CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            45689999999999855    689999999999999987543211  22333445655554443321      1114678


Q ss_pred             EEECCCeEEEEECCCCeE----E--Ee-----ecCCCceeEEEecCCCC----CEEEEEECCCeEEEEECCCCcc-----
Q 009380          300 TSCYDGLIRLMDAEKEVF----D--LV-----YSSEYAVFSLSQQPNNV----NTLYFGEGQGGLNIWDVRSRKS-----  359 (536)
Q Consensus       300 s~s~dg~I~vwd~~~~~~----~--~~-----~~~~~~i~~l~~~~~~~----~~l~~g~~dg~i~i~d~~~~~~-----  359 (536)
                      +++.||.|++|++.....    .  ..     ..+...+..++|.++..    .++++++.||.+.+||+.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            999999999999764311    1  00     12345677888877542    5789999999999999853211     


Q ss_pred             -------------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC--CCcceeecccCceeEEEEcc
Q 009380          360 -------------ATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK--PEPMKVLSHKRAVHSAYFSP  424 (536)
Q Consensus       360 -------------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~--~~~~~~~~~~~~v~~l~~sp  424 (536)
                                   ......+...+.+++|+|++  +|++|+.||+|+|||+.+++...  .....+.+|...|++++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                         01112345668999999975  89999999999999998764211  01123346999999999999


Q ss_pred             CCCeEEEEeCCCc---EEEEeCCCCCcceEEeccC--------CCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcc
Q 009380          425 SGSSLATTSFDDT---IGIWSGVNFENTSMIHHNN--------QTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQR  493 (536)
Q Consensus       425 ~g~~l~t~s~dg~---I~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~  493 (536)
                      +|++|++++.|++   |++||+.+++.+..+....        ..++.-.+..++|+|++++|++|+.|+.|+|||+.++
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence            9999999999875   9999999988777663211        0111112344789999999999999999999999999


Q ss_pred             ccceeccCCceeee-------------------eeeEeecCC---------CCCEEEEEccCCeEEEEe
Q 009380          494 RSVATLQSPYISAI-------------------PCRFHAHPH---------QVGTLAGATGGGQVYVWT  534 (536)
Q Consensus       494 ~~~~~l~~~~~~~~-------------------~~~~~~~p~---------~~~~lasgs~Dg~v~iW~  534 (536)
                      +++.++.+|...+.                   ...+.|.+.         ....|++++.|+.|++|.
T Consensus       322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            99999987643221                   112333331         124588999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-27  Score=226.48  Aligned_cols=270  Identities=10%  Similarity=0.031  Sum_probs=206.0

Q ss_pred             ccceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE
Q 009380          175 LGFVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG  254 (536)
Q Consensus       175 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg  254 (536)
                      +..++.||...|.++.|++    |+          +++.||.|++|++..    ....|...|.++++++  + ..++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~----l~----------sgs~Dg~v~~Wd~~~----~~~~h~~~V~~~~~~~--~-~~~~s~   63 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP----LI----------SGSYDGRIMEWSSSS----MHQDHSNLIVSLDNSK--A-QEYSSI   63 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT----TE----------EEETTSCEEETTTTE----EECCCCSCEEEEECCS--T-TCCEEE
T ss_pred             eeEEECCCCCceEEEEECc----EE----------EEeCCCeEEEEECCC----CCCCCCCCEEEEEecC--C-CeEEEE
Confidence            3457899999999999987    33          678999999999743    3478999999999987  5 467899


Q ss_pred             eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC
Q 009380          255 SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP  334 (536)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~  334 (536)
                      +.|++|++|++...           .+...+.++.+++++  .++..+.++.+.+|+..++...........+.++  ++
T Consensus        64 s~D~~v~~w~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  128 (287)
T d1pgua2          64 SWDDTLKVNGITKH-----------EFGSQPKVASANNDG--FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV--SL  128 (287)
T ss_dssp             ETTTEEEETTEEEE-----------ECSSCEEEEEECSSS--EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE--EE
T ss_pred             eecccccccccccc-----------ccccceeeeeeccCC--ceEEEeecccceeeeccceeeeeeccccceeeee--ec
Confidence            99999999998641           123457788888875  4455566778999999998877777666665554  45


Q ss_pred             CCCCEEEEEECCC-eEEEEECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeec
Q 009380          335 NNVNTLYFGEGQG-GLNIWDVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLS  412 (536)
Q Consensus       335 ~~~~~l~~g~~dg-~i~i~d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~  412 (536)
                      ++ ..+++++.++ .|++|++...+....+. .|...+++++|+|++ .+|++|+.||.|++||+.++.   ........
T Consensus       129 ~~-~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~---~~~~~~~~  203 (287)
T d1pgua2         129 SQ-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSRE---VKTSRWAF  203 (287)
T ss_dssp             CS-SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE---EEECCSCC
T ss_pred             cC-cceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCc-cccccccccccccceeecccc---cccccccc
Confidence            55 5777777764 79999998766554444 577899999999987 799999999999999998753   11123447


Q ss_pred             ccCceeEEEEccC----------CCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC
Q 009380          413 HKRAVHSAYFSPS----------GSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT  482 (536)
Q Consensus       413 ~~~~v~~l~~sp~----------g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d  482 (536)
                      |...|.+++|+|.          +.+|++|+.|++|+|||+.+........  ..+...+..  +.|++++ .|++++.|
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~--~~h~~~V~~--v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL--NAHKDGVNN--LLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET--TSSTTCEEE--EEEEETT-EEEEEETT
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe--CCCCCCeEE--EEECCCC-EEEEEECC
Confidence            8999999999875          4689999999999999997754433321  112223443  6789886 68889999


Q ss_pred             CcEEEEcC
Q 009380          483 RTVEVISP  490 (536)
Q Consensus       483 g~I~v~d~  490 (536)
                      +.|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.8e-27  Score=236.57  Aligned_cols=287  Identities=10%  Similarity=0.115  Sum_probs=201.1

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCcc-----cc--ccccCCceEEEEEE---ec-
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPE-----NI--ARIMPGRITQMKFL---PC-  245 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~-----~~--~~~~~~~I~~v~~~---p~-  245 (536)
                      ...++|...|.++.+++  +.++          +++.|+.|+||+......     ..  ...|...+..+...   +. 
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~----------S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTV----------SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD   75 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEE----------EEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred             ecCCcccCccEEEEEeC--CEEE----------EEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccC
Confidence            45789999999999865  4454          457899999999643321     11  11234443333322   21 


Q ss_pred             -CCccEEEEEeCCCcEEEEECCCCCCCCCceE------EeccCCCCEEEEEEecCC----CCEEEEEECCCeEEEEECCC
Q 009380          246 -SDVRMVVAGSKLGNITFWNLDSQQDEDNGIY------LFRTHLGPISGIVTQQYC----LSKIFTSCYDGLIRLMDAEK  314 (536)
Q Consensus       246 -~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~------~~~~h~~~V~~l~~~~~~----~~~l~s~s~dg~I~vwd~~~  314 (536)
                       .++.++++++.||.|++|++...........      ....+...+..++|.++.    ..++++++.||+|++|++..
T Consensus        76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~  155 (393)
T d1sq9a_          76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  155 (393)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence             1335788999999999999875432111111      112345668888888764    25789999999999999743


Q ss_pred             Ce-------------------EEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE------eccCCC
Q 009380          315 EV-------------------FDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW------LLHEAR  369 (536)
Q Consensus       315 ~~-------------------~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------~~h~~~  369 (536)
                      ..                   ......+...+.+++|+|++  +|++|+.||+|++||+.+++++..+      .+|...
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~  233 (393)
T d1sq9a_         156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS  233 (393)
T ss_dssp             SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred             CCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccce
Confidence            10                   01112345668999999986  8999999999999999998876544      468999


Q ss_pred             eEEEEEecCCCCEEEEEeCCCc---EEEEeCCCCCCC---------CCCcceeecccCceeEEEEccCCCeEEEEeCCCc
Q 009380          370 INTIDFNPRNPNIMATSSTDGT---ACIWDLRSMATD---------KPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDT  437 (536)
Q Consensus       370 i~~i~~~p~~~~~l~s~s~dg~---i~iwdl~~~~~~---------~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~  437 (536)
                      |++++|+|++ .+|++|+.|++   |++||+.+++..         ........+|...|++++|+|++++|++++.|++
T Consensus       234 V~~l~~spdg-~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~  312 (393)
T d1sq9a_         234 IRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK  312 (393)
T ss_dssp             EEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             EEEccccccc-ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCE
Confidence            9999999988 79999998875   899999876411         1112223479999999999999999999999999


Q ss_pred             EEEEeCCCCCcceEEe-ccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380          438 IGIWSGVNFENTSMIH-HNNQTGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       438 I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                      |+|||+.+++++.++. |......  ....+.|++++..+++++
T Consensus       313 v~vWd~~~g~~~~~l~gH~~~v~~--~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         313 LRFWDVKTKERITTLNMHCDDIEI--EEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEEEETTTTEEEEEEECCGGGCSS--GGGCCCBCTTSCBCSSCC
T ss_pred             EEEEECCCCCEEEEECCcCCcccC--CccEEEECCCCCEEEEcc
Confidence            9999999999888885 3322211  112255788887776554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.4e-26  Score=215.19  Aligned_cols=271  Identities=13%  Similarity=0.188  Sum_probs=207.1

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEeccccc-CccccccccCCceEEEEEEecCCccEEEEEe
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTL-KPENIARIMPGRITQMKFLPCSDVRMVVAGS  255 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~-~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~  255 (536)
                      ....+|..+|.|+.+  |++.|+          +++.||.|+|||+.. +....+++|.+.|++++|    ++++|++|+
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~----------sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~----~~~~l~s~s   72 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIV----------SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGS   72 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEE----------EEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEE
T ss_pred             eccCCCCCCEEEEEE--cCCEEE----------EEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec----ccceeeccc
Confidence            345678899998765  677777          568999999999853 345567889999999987    557999999


Q ss_pred             CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCe----EEEeecCCCceeEEE
Q 009380          256 KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEV----FDLVYSSEYAVFSLS  331 (536)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~----~~~~~~~~~~i~~l~  331 (536)
                      .||.|++|++..    .........+.....  .+.+.. ..++++..++.+.+|+.....    ......+...+..+.
T Consensus        73 ~D~~i~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  145 (293)
T d1p22a2          73 SDSTVRVWDVNT----GEMLNTLIHHCEAVL--HLRFNN-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD  145 (293)
T ss_dssp             TTSCEEEEESSS----CCEEEEECCCCSCEE--EEECCT-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred             cccccccccccc----ccccccccccccccc--cccccc-cceeecccccceeEeeccccccccccccccccccccccce
Confidence            999999999987    445555544444333  344444 789999999999999998653    233445677888888


Q ss_pred             ecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee
Q 009380          332 QQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       332 ~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      +.+   ..+++++.|+.|++||+++++.+..+.++...+..+.+++   .++++++.||.|++||+++..    ......
T Consensus       146 ~~~---~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~----~~~~~~  215 (293)
T d1p22a2         146 FDD---KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA----CLRVLE  215 (293)
T ss_dssp             EET---TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC----EEEEEC
T ss_pred             ecc---cccccccCCCceeeecCCCCcEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce----eeeeec
Confidence            765   4688999999999999999999999999999999988874   589999999999999999853    444445


Q ss_pred             cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCC---------cceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFE---------NTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT  482 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d  482 (536)
                      .|...+..  +++++.+|++++.||.|++||+....         ....+.   .+...+..  ++|  ++.+|++|+.|
T Consensus       216 ~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~H~~~V~~--v~~--d~~~l~s~s~D  286 (293)
T d1p22a2         216 GHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV---EHSGRVFR--LQF--DEFQIVSSSHD  286 (293)
T ss_dssp             CCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC---CCSSCCCC--EEE--CSSCEEECCSS
T ss_pred             ccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec---CCCCCEEE--EEE--cCCEEEEEecC
Confidence            67777764  55678899999999999999975322         122221   11122333  455  56789999999


Q ss_pred             CcEEEEc
Q 009380          483 RTVEVIS  489 (536)
Q Consensus       483 g~I~v~d  489 (536)
                      |.|+|||
T Consensus       287 g~i~iWD  293 (293)
T d1p22a2         287 DTILIWD  293 (293)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.7e-28  Score=238.56  Aligned_cols=314  Identities=10%  Similarity=0.014  Sum_probs=226.4

Q ss_pred             ecCC-CCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCC--cEEEEECC
Q 009380          190 KDEG-LGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLG--NITFWNLD  266 (536)
Q Consensus       190 ~~s~-~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg--~v~iwd~~  266 (536)
                      .||| ||+.++..           ..|.|.+|++...... .-.|.+.|.+++|+|  ||++|++++.+.  .|++||+.
T Consensus         9 ~fSP~dG~~~a~~-----------~~g~v~v~d~~~~~~~-~~~~~~~v~~~~~sp--Dg~~l~~~~~~~g~~v~v~d~~   74 (360)
T d1k32a3           9 DFSPLDGDLIAFV-----------SRGQAFIQDVSGTYVL-KVPEPLRIRYVRRGG--DTKVAFIHGTREGDFLGIYDYR   74 (360)
T ss_dssp             EEEECGGGCEEEE-----------ETTEEEEECTTSSBEE-ECSCCSCEEEEEECS--SSEEEEEEEETTEEEEEEEETT
T ss_pred             cccCCCCCEEEEE-----------ECCeEEEEECCCCcEE-EccCCCCEEEEEECC--CCCEEEEEEcCCCCEEEEEECC
Confidence            4898 99999865           3468999998655433 347999999999999  999988776553  79999998


Q ss_pred             CCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEE-
Q 009380          267 SQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGE-  344 (536)
Q Consensus       267 ~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~-  344 (536)
                      +     .....+..|...|.+++|+|++ ++|++++.++.+++|++.++...... .+...+.+++|+|++ ++|+.+. 
T Consensus        75 ~-----~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~la~~~~  147 (360)
T d1k32a3          75 T-----GKAEKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS-RFIAYGFP  147 (360)
T ss_dssp             T-----CCEEECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-CEEEEEEE
T ss_pred             C-----CcEEEeeCCCceEEeeeecccc-cccceeccccccccccccccceeeeeecccccccchhhccce-eeeeeecc
Confidence            5     4566788899999999999999 99999999999999999988766554 567789999999998 6776543 


Q ss_pred             ---------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC---Ccceeec
Q 009380          345 ---------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKP---EPMKVLS  412 (536)
Q Consensus       345 ---------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~---~~~~~~~  412 (536)
                               .++.+++||+.+++... +..+...+..+.|+|+| +.|++++.++.+.+||.........   .+.....
T Consensus       148 ~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~  225 (360)
T d1k32a3         148 LKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL  225 (360)
T ss_dssp             ECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred             ccccceeeccccceeeeccccCceee-ecccccccccccccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEec
Confidence                     34569999998876543 33477888999999988 6899999999999999766431111   1122224


Q ss_pred             ccCceeEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEE
Q 009380          413 HKRAVHSAYFSPSGSSLATTSFDD-----TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEV  487 (536)
Q Consensus       413 ~~~~v~~l~~sp~g~~l~t~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v  487 (536)
                      |...+..+.|++++..++++..+.     .+..++...+.......+..   .........+++.+.+++.++.++.|++
T Consensus       226 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES---SILIYSVPVHGEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS---EEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred             ccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCC---CceEEEEEecCCCeeEEEecCCCCEEEE
Confidence            555666677788777666655432     24444444433322222211   1111111223344456888889999999


Q ss_pred             EcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          488 ISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       488 ~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ||+.+++.. .+.    ..+ ..++|+| |+.+|++++.||.|++||++
T Consensus       303 ~d~~~~~~~-~~~----~~v-~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         303 YDVKTRKVT-EVK----NNL-TDLRLSA-DRKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             EETTTCCEE-EEE----EEE-EEEEECT-TSCEEEEEETTSCEEEEESS
T ss_pred             EECCCCeEE-Eec----CCc-CEEEECC-CCCEEEEEECCCeEEEEECC
Confidence            999887542 222    122 4688999 78999999999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2.4e-25  Score=218.20  Aligned_cols=292  Identities=10%  Similarity=-0.012  Sum_probs=221.3

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcE
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNI  260 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v  260 (536)
                      +|...|.++.|+|||+.|+..        ....+..|.+|+...........|.+.|.+++|+|  ++++|++++.++.+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~--------~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~  109 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIH--------GTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDR--NGKFAVVANDRFEI  109 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEE--------EETTEEEEEEEETTTCCEEECCCCCCSEEEEEECT--TSSEEEEEETTSEE
T ss_pred             cCCCCEEEEEECCCCCEEEEE--------EcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecc--cccccceecccccc
Confidence            688999999999999998854        12223478999987777777788999999999999  99999999999999


Q ss_pred             EEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE----------CCCeEEEEECCCCeEEEeecCCCceeEE
Q 009380          261 TFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC----------YDGLIRLMDAEKEVFDLVYSSEYAVFSL  330 (536)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s----------~dg~I~vwd~~~~~~~~~~~~~~~i~~l  330 (536)
                      .+|++.+    ......+..|...+.+++|+|++ ++|+.++          .++.+++||+.++.......+...+..+
T Consensus       110 ~~~~~~~----~~~~~~~~~~~~~~~~~~~spdg-~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~  184 (360)
T d1k32a3         110 MTVDLET----GKPTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP  184 (360)
T ss_dssp             EEEETTT----CCEEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEE
T ss_pred             ccccccc----cceeeeeecccccccchhhccce-eeeeeeccccccceeeccccceeeeccccCceeeecccccccccc
Confidence            9999987    67778888999999999999999 8887654          3456999999999988888888999999


Q ss_pred             EecCCCCCEEEEEECCCeEEEEECCCCcc-------ceeEeccCCCeEEEEEecCCCCEEEEEeCCCc---EEEEeCCCC
Q 009380          331 SQQPNNVNTLYFGEGQGGLNIWDVRSRKS-------ATEWLLHEARINTIDFNPRNPNIMATSSTDGT---ACIWDLRSM  400 (536)
Q Consensus       331 ~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-------~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~---i~iwdl~~~  400 (536)
                      +|+|++ +.|++++.++.+.+||......       ...+..|...+..+.|++++ ..++++..+..   .++|.+...
T Consensus       185 ~~spdg-~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~  262 (360)
T d1k32a3         185 AFDADS-KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS-MTSEAGEYDLNDMYKRSSPINVD  262 (360)
T ss_dssp             EECTTS-CEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG-GSCCCCCCCCTTGGGGCEECSCC
T ss_pred             cccCCC-CEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc-CcccccceeecccccceeecccC
Confidence            999998 8999999999999999765432       22333455555566677765 34444433321   223433321


Q ss_pred             CCCCCCcceeecccCceeEEEEccCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEE
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVF  477 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~  477 (536)
                      .   .....+..+...+..+.+.+.+   .++++++.++.|++||+.+.+......       .+.  .++|+|||++|+
T Consensus       263 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-------~v~--~~~~SpDG~~l~  330 (360)
T d1k32a3         263 P---GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN-------NLT--DLRLSADRKTVM  330 (360)
T ss_dssp             C---BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEE-------EEE--EEEECTTSCEEE
T ss_pred             c---CceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecC-------CcC--EEEECCCCCEEE
Confidence            1   1233344555666666665544   467888899999999998765432211       122  378999999999


Q ss_pred             EEcCCCcEEEEcCCccccceeccC
Q 009380          478 IGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       478 ~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      +++.||.|++||+..++...++..
T Consensus       331 ~~~~Dg~i~v~d~~~~~~~~~~~~  354 (360)
T d1k32a3         331 VRKDDGKIYTFPLEKPEDERTVET  354 (360)
T ss_dssp             EEETTSCEEEEESSCTTSCEECCC
T ss_pred             EEECCCeEEEEECCCCCcceEEEe
Confidence            999999999999999987776654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.4e-22  Score=193.22  Aligned_cols=272  Identities=12%  Similarity=0.076  Sum_probs=209.7

Q ss_pred             ccccceEEecccccCccccccccCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEE
Q 009380          211 IEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIV  289 (536)
Q Consensus       211 ~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~  289 (536)
                      ...++.|.+||+........-.+.+.+..++|+|  ||++| ++++.++.|.+||+.+    ...+..+..|. .+..+.
T Consensus         8 ~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~sp--dG~~l~v~~~~~~~i~v~d~~t----~~~~~~~~~~~-~~~~~~   80 (301)
T d1l0qa2           8 NSESDNISVIDVTSNKVTATIPVGSNPMGAVISP--DGTKVYVANAHSNDVSIIDTAT----NNVIATVPAGS-SPQGVA   80 (301)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECSSSEEEEEECT--TSSEEEEEEGGGTEEEEEETTT----TEEEEEEECSS-SEEEEE
T ss_pred             ECCCCEEEEEECCCCeEEEEEECCCCceEEEEeC--CCCEEEEEECCCCEEEEEECCC----Cceeeeeeccc-cccccc
Confidence            4567899999985543222222346788999999  99877 5677889999999997    67777777775 468899


Q ss_pred             EecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC
Q 009380          290 TQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR  369 (536)
Q Consensus       290 ~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~  369 (536)
                      |++++...++++..++.+.+|+..++.......+...+.+++|+|++..+++++..++.+.+|+..++..+..+. +...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  159 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRS  159 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSS
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-cCCC
Confidence            999984455666778899999999998888888888899999999995555666678899999999998887776 4456


Q ss_pred             eEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC---CCcEEEEeCCCC
Q 009380          370 INTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNF  446 (536)
Q Consensus       370 i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~---dg~I~iwd~~~~  446 (536)
                      +..+.++|++..+++++..++.+.+|+....     ...........+..+.|++++..+++++.   ++.|.+||+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTT-----EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ceEEEeeccccceeeecccccccccccccce-----eeeecccccCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence            8899999988544444445567778877653     34444556677889999999998876653   467999999998


Q ss_pred             CcceEEeccCCCCceeeeeEEEEcCCCCEE-EEEcCCCcEEEEcCCccccceeccC
Q 009380          447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCV-FIGNMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~gs~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      +....+....    ..  ..++|+|||++| ++++.++.|.+||+.+++++.++..
T Consensus       235 ~~~~~~~~~~----~~--~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         235 KITARIPVGP----DP--AGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             EEEEEEECCS----SE--EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEEcCCC----CE--EEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            8777765432    22  337899999986 5677789999999999998888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=6.5e-22  Score=188.42  Aligned_cols=264  Identities=13%  Similarity=0.139  Sum_probs=204.2

Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecCCCceeE
Q 009380          251 VVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSSEYAVFS  329 (536)
Q Consensus       251 l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~  329 (536)
                      .++++.+++|.+||+.+    .+.+..+... ..+..++|+|+| ++| ++++.++.|++||+.++.....+.....+..
T Consensus         5 yV~~~~~~~v~v~D~~t----~~~~~~i~~g-~~p~~va~spdG-~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~   78 (301)
T d1l0qa2           5 YIANSESDNISVIDVTS----NKVTATIPVG-SNPMGAVISPDG-TKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQG   78 (301)
T ss_dssp             EEEETTTTEEEEEETTT----TEEEEEEECS-SSEEEEEECTTS-SEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred             EEEECCCCEEEEEECCC----CeEEEEEECC-CCceEEEEeCCC-CEEEEEECCCCEEEEEECCCCceeeeeeccccccc
Confidence            45677899999999998    6667776544 457899999999 766 5667899999999999988777766677899


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK  409 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~  409 (536)
                      +.|++++...++++..++.+.+|+..+++....+. +...+.++.|+|++..+++++..++.+.+|+..+.     ....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-----~~~~  152 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-----AVIN  152 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-----EEEE
T ss_pred             cccccccccccccccccceeeecccccceeeeecc-ccccceEEEeecCCCeeeeeeccccceeeeecccc-----ceee
Confidence            99999985556666778899999999998887776 45677889999999767778888899999999874     3444


Q ss_pred             eecccCceeEEEEccCCCeEEEEeCC-CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC---CCcE
Q 009380          410 VLSHKRAVHSAYFSPSGSSLATTSFD-DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM---TRTV  485 (536)
Q Consensus       410 ~~~~~~~v~~l~~sp~g~~l~t~s~d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~---dg~I  485 (536)
                      ...+...+..+.++|++..+++++.+ +.+.+|+.........+....    .  ...+.|++++..+++++.   ++.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~g~~~~v~~~~~~~~~v  226 (301)
T d1l0qa2         153 TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA----A--PSGIAVNPEGTKAYVTNVDKYFNTV  226 (301)
T ss_dssp             EEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS----E--EEEEEECTTSSEEEEEEECSSCCEE
T ss_pred             ecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccC----C--cceeeccccccccccccccceeeee
Confidence            55566778999999999988888765 567778776665555443322    1  223678999998776543   3679


Q ss_pred             EEEcCCccccceeccCCceeeeeeeEeecCCCCCEE-EEEccCCeEEEEecC
Q 009380          486 EVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL-AGATGGGQVYVWTSD  536 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l-asgs~Dg~v~iW~~d  536 (536)
                      .+||..+++.+..+..+..   +..++|+| ++.+| ++++.|+.|+|||++
T Consensus       227 ~v~D~~t~~~~~~~~~~~~---~~~va~sp-dg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         227 SMIDTGTNKITARIPVGPD---PAGIAVTP-DGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             EEEETTTTEEEEEEECCSS---EEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred             eeeecCCCeEEEEEcCCCC---EEEEEEeC-CCCEEEEEECCCCeEEEEECC
Confidence            9999999988887765322   34688999 56765 688899999999974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1e-22  Score=205.43  Aligned_cols=287  Identities=8%  Similarity=0.025  Sum_probs=196.9

Q ss_pred             cccccceEEecccccCcc-ccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE---eccCCCCE
Q 009380          210 KIEVGSCVDIGSLTLKPE-NIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL---FRTHLGPI  285 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~-~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~---~~~h~~~V  285 (536)
                      ....+|.|.|||+..... ..+..| ..+..++|+|  ||++|++++.||+|++||+.+..  ......   ..+|.+.+
T Consensus        37 ~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSP--DGk~l~~~~~d~~v~vwd~~t~~--~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          37 TLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSA--SGRYLLVIGRDARIDMIDLWAKE--PTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECT--TSCEEEEEETTSEEEEEETTSSS--CEEEEEEECCSEEEEEE
T ss_pred             EEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC--CCCEEEEEeCCCCEEEEEccCCc--eeEEEEEeCCCCCcceE
Confidence            467789999999865433 233344 5699999999  99999999999999999998742  112222   23566667


Q ss_pred             EEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeec------------CCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380          286 SGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYS------------SEYAVFSLSQQPNNVNTLYFGEGQGGLNIW  352 (536)
Q Consensus       286 ~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~------------~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~  352 (536)
                      .+++|+||| ++| +++..++.+.+||..++.......            +......+.+++++..++++....+.+.++
T Consensus       112 ~s~~~spDG-~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         112 SSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             ECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EeeeecCCC-CEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            788888999 665 555689999999999886654432            233445566667663333333445667777


Q ss_pred             ECCCCccc-eeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-----------------------------
Q 009380          353 DVRSRKSA-TEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-----------------------------  402 (536)
Q Consensus       353 d~~~~~~~-~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-----------------------------  402 (536)
                      +......+ .....+...+..+.|+|++..++++...+..+.+||..+++.                             
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  270 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence            76655443 233467888999999998865555555566677777665320                             


Q ss_pred             ---------------------CCCCcceeecccCceeEEEEccCCCeEEE-------EeCCCcEEEEeCCCCCcceEEec
Q 009380          403 ---------------------DKPEPMKVLSHKRAVHSAYFSPSGSSLAT-------TSFDDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       403 ---------------------~~~~~~~~~~~~~~v~~l~~sp~g~~l~t-------~s~dg~I~iwd~~~~~~~~~~~~  454 (536)
                                           .......+.+|...+..++|+|++++|++       ++.|++|+|||+.+++...++..
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence                                 00111234467888999999999999995       45678999999999987766521


Q ss_pred             -c---CCCCceeeeeEEEEcCCCCEEEEE-----cCCCcEEEEcCCccccceeccCC
Q 009380          455 -N---NQTGRWISSFRAIWGWDDSCVFIG-----NMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       455 -~---~~~~~~~~~~~~~~s~~g~~l~~g-----s~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                       .   ........++.+.|||||++++++     +.++.|.|||..+++....+.++
T Consensus       351 ~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~  407 (426)
T d1hzua2         351 IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  407 (426)
T ss_dssp             HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence             1   011111223447899999977543     45788999999999888877764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=4.6e-23  Score=208.08  Aligned_cols=297  Identities=7%  Similarity=-0.006  Sum_probs=198.3

Q ss_pred             cccccceEEecccccCccc-cccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceE---EeccCCCCE
Q 009380          210 KIEVGSCVDIGSLTLKPEN-IARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIY---LFRTHLGPI  285 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~-~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~---~~~~h~~~V  285 (536)
                      +.+.+|.|.|||+...... .+..+ ..+..++|+|  ||++|++++.||.|.+||+.+..  .....   ....|.+.+
T Consensus        37 ~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~--~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          37 TLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKE--PTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT--TSCEEEEEETTSEEEEEETTSSS--CCEEEEEECCSEEEEEE
T ss_pred             EEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCC--ceEEEEEecCCCCCCeE
Confidence            5678899999998654332 23334 5799999999  99999999999999999998743  22222   234566667


Q ss_pred             EEEEEecCCCCE-EEEEECCCeEEEEECCCCeEEEee------------cCCCceeEEEecCCCCCEEEEEECCCeEEEE
Q 009380          286 SGIVTQQYCLSK-IFTSCYDGLIRLMDAEKEVFDLVY------------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIW  352 (536)
Q Consensus       286 ~~l~~~~~~~~~-l~s~s~dg~I~vwd~~~~~~~~~~------------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~  352 (536)
                      .+..|+||| ++ +++++.+++|++||..++......            .+......+.+++++..++++...++.|.+|
T Consensus       112 ~s~~~SpDG-~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~  190 (432)
T d1qksa2         112 TSKMEGWED-KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV  190 (432)
T ss_dssp             ECCSTTCTT-TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EecccCCCC-CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEE
Confidence            777788899 66 478888999999999988765443            2445677889999985556667778999999


Q ss_pred             ECCCCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee------cccC----------
Q 009380          353 DVRSRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL------SHKR----------  415 (536)
Q Consensus       353 d~~~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~------~~~~----------  415 (536)
                      |..+++...... .+...+.++.|+|++..+++++..++.+.++|..+.+     .....      .|..          
T Consensus       191 d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~  265 (432)
T d1qksa2         191 DYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK-----LVAIEDTGGQTPHPGRGANFVHPTF  265 (432)
T ss_dssp             ETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE-----EEEEEECSSSSBCCTTCEEEEETTT
T ss_pred             EccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce-----EEEEeccCccccccCcccceecCCC
Confidence            998877654433 4567789999999985455555566789999987642     11111      1222          


Q ss_pred             -----------------------------ceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeE
Q 009380          416 -----------------------------AVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFR  466 (536)
Q Consensus       416 -----------------------------~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~  466 (536)
                                                   .+....++|++..+++++.++..++|+........         .....  
T Consensus       266 g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~---------~~~~s--  334 (432)
T d1qksa2         266 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA---------EISGS--  334 (432)
T ss_dssp             EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH---------HHHTC--
T ss_pred             CceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCC---------CeeeE--
Confidence                                         23333344444444444444444444332211100         00011  


Q ss_pred             EEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEc-----cCCeEEEEec
Q 009380          467 AIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGAT-----GGGQVYVWTS  535 (536)
Q Consensus       467 ~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs-----~Dg~v~iW~~  535 (536)
                      ++ .||++.|++++.|+.+++|++.++..+   ..++..+  +.+.|+| ||.+|+.+.     .+|.|.|||.
T Consensus       335 v~-vpDg~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v--~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         335 VA-VFDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRV--VQGEFNK-DGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             EE-EEEGGGCCCSSSCCCEEEECHHHHHTC---CSSCCEE--EEEEECT-TSSEEEEEEECCTTSCCEEEEEET
T ss_pred             EE-EEechhhcccccCCceEeccccccccc---CCCCCcE--EEeEECC-CCCEEEEEEecCCCCCCcEEEEEC
Confidence            22 378999999999999999998666433   3344333  4688999 677775543     5789999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=4.9e-22  Score=200.36  Aligned_cols=279  Identities=9%  Similarity=0.033  Sum_probs=192.2

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEee-----
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVY-----  321 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~-----  321 (536)
                      ...++++.+.||.|+|||+.+    ++.+..+..|. .+..++|+||| ++|++++.|++|++||+.+++.....     
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t----~~~~~~l~~g~-~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDS----KKIVKVIDTGY-AVHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTT----CSEEEEEECCS-SEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             CeEEEEEEcCCCEEEEEECCC----CcEEEEEeCCC-CeeEEEECCCC-CEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            344668888999999999998    78888888774 58999999999 99999999999999999987643221     


Q ss_pred             -cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-----------EEEEEecCCCCEEEEEeCC
Q 009380          322 -SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-----------NTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       322 -~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-----------~~i~~~p~~~~~l~s~s~d  389 (536)
                       +|...+.+++|+|++..+++++..++.+.+||..++.++..+..|...+           ..+.+++++..++.+....
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence             3455677888899994344556688999999999998877776555444           4455555553333333344


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccC------------
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNN------------  456 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~------------  456 (536)
                      +.+.+++.....   ........+...+..+.|+|++++++++. .+..+.+|+..+++....+....            
T Consensus       185 ~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
T d1hzua2         185 GKVLLVNYKDID---NLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH  261 (426)
T ss_dssp             TEEEEEECSSSS---SCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred             CeEEEEEecccc---ceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeec
Confidence            555555554432   12334457888899999999999888776 45568888877655433322100            


Q ss_pred             ------------CCC-----------------cee--------eeeEEEEcCCCCEEEE-------EcCCCcEEEEcCCc
Q 009380          457 ------------QTG-----------------RWI--------SSFRAIWGWDDSCVFI-------GNMTRTVEVISPAQ  492 (536)
Q Consensus       457 ------------~~~-----------------~~~--------~~~~~~~s~~g~~l~~-------gs~dg~I~v~d~~~  492 (536)
                                  ..+                 ...        ....++|+|++++|++       ++.+++|+|||+.+
T Consensus       262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t  341 (426)
T d1hzua2         262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN  341 (426)
T ss_dssp             TTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred             CCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence                        000                 000        1123679999999995       45578999999999


Q ss_pred             cccceeccC--------CceeeeeeeEeecCCCCCEEE-EE----ccCCeEEEEecC
Q 009380          493 RRSVATLQS--------PYISAIPCRFHAHPHQVGTLA-GA----TGGGQVYVWTSD  536 (536)
Q Consensus       493 ~~~~~~l~~--------~~~~~~~~~~~~~p~~~~~la-sg----s~Dg~v~iW~~d  536 (536)
                      ++...++..        .+... .+.+.|+| ||.+|+ ++    +.+|.|+|||.+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~r-v~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         342 LDAKYQVLPIAEWADLGEGAKR-VVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             TTSCCEEECHHHHHCCCSSCCC-EEEEEECS-SSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             CCcCeEEeccchhcccCCCCcc-EEEEEECC-CCCEEEEEEecCCCCCCeEEEEECC
Confidence            887765531        11112 24678999 667663 32    478999999963

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=6.2e-20  Score=177.18  Aligned_cols=270  Identities=9%  Similarity=-0.003  Sum_probs=196.7

Q ss_pred             cccccceEEecccccCccc-cccc--cCCceEEEEEEecCCccEE-EEEeCCCcEEEEECCCCCCCCCceEEeccCCC--
Q 009380          210 KIEVGSCVDIGSLTLKPEN-IARI--MPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG--  283 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~~-~~~~--~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~--  283 (536)
                      +.+.|+.|.+||+...... .+..  +...+.+++|+|  ||++| ++++.++.|.+||+.+    ++.+..+..+..  
T Consensus         6 t~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp--Dg~~l~v~~~~~~~v~v~D~~t----~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVNKSESLVKIDLVT----GETLGRIDLSTPEE   79 (337)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEETTTTEEEEEETTT----CCEEEEEECCBTTE
T ss_pred             EEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC--CCCEEEEEECCCCeEEEEECCC----CcEEEEEecCCCcc
Confidence            4577899999998654321 1222  345688999999  99887 5677899999999998    666666665533  


Q ss_pred             ---CEEEEEEecCCCCEEEEEE------------CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCe
Q 009380          284 ---PISGIVTQQYCLSKIFTSC------------YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGG  348 (536)
Q Consensus       284 ---~V~~l~~~~~~~~~l~s~s------------~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~  348 (536)
                         .+..++|+|++ .+++++.            .+..+.+||..++...........+.+++|+|++ .++++++.  .
T Consensus        80 ~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~--~  155 (337)
T d1pbyb_          80 RVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG-SKLYGLGR--D  155 (337)
T ss_dssp             EEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS-SCEEEESS--S
T ss_pred             cccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCC-CEEEEEcC--C
Confidence               34578999999 8887776            3678999999999888888888889999999998 67777654  5


Q ss_pred             EEEEECCCCccceeEeccCCCeEEEEEecCCC---------C--------------EEEEEeCCCcEEEEeCCCCCCCCC
Q 009380          349 LNIWDVRSRKSATEWLLHEARINTIDFNPRNP---------N--------------IMATSSTDGTACIWDLRSMATDKP  405 (536)
Q Consensus       349 i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~---------~--------------~l~s~s~dg~i~iwdl~~~~~~~~  405 (536)
                      +.+||..+++....+..+... ....+.|++.         .              .+..++.++.+.+||+.++.   .
T Consensus       156 ~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  231 (337)
T d1pbyb_         156 LHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE---M  231 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC---E
T ss_pred             cceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc---E
Confidence            788999988877666532211 1111111110         0              11112224568899988753   1


Q ss_pred             CcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcE
Q 009380          406 EPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTV  485 (536)
Q Consensus       406 ~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I  485 (536)
                      .......+...+..+.++|++.+++.+  ++.|++||+.+++.+..+.+...      ...++|+|||++|++++.++.|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~s~dG~~l~v~~~~~~i  303 (337)
T d1pbyb_         232 AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS------YYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC------CCEEEECTTSCEEEEESBSSEE
T ss_pred             EEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCC------EEEEEECCCCCEEEEEeCCCcE
Confidence            223344677888999999999988765  58899999999988888765331      2337799999999999999999


Q ss_pred             EEEcCCccccceeccC
Q 009380          486 EVISPAQRRSVATLQS  501 (536)
Q Consensus       486 ~v~d~~~~~~~~~l~~  501 (536)
                      .|||..+++.+.++..
T Consensus       304 ~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         304 AAYDAETLEKKGQVDL  319 (337)
T ss_dssp             EEEETTTCCEEEEEEC
T ss_pred             EEEECCCCcEEEEEEC
Confidence            9999999999888764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.9e-19  Score=181.17  Aligned_cols=199  Identities=12%  Similarity=0.015  Sum_probs=155.9

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe------
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV------  320 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~------  320 (536)
                      +.-++++.+.+|+|.|||..+    .+.+..+..| ..+..++|+||| ++|++++.|+.|++||+.++.....      
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t----~~v~~~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGST----YEIKTVLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTT----CCEEEEEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             CcEEEEEEcCCCEEEEEECCC----CcEEEEEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence            444568899999999999998    7888888877 469999999999 9999999999999999987653221      


Q ss_pred             ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec-----------cCCCeEEEEEecCCCCEEEEEeCC
Q 009380          321 YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL-----------HEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       321 ~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~-----------h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      ..+...+.+..|+|+|..+++++..++.|.+||..+++++..+..           +......+.++|++..++++...+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            134456667778889944457788899999999999988776653           345567889999987777888889


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCCCcceEEec
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTSMIHH  454 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~~~~~~~~  454 (536)
                      +.|.+||....+   ........+...+..+.|+|+|+++++++. ++.+.++|..+.+....+..
T Consensus       185 ~~i~~~d~~~~~---~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         185 GKILLVDYTDLN---NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             TEEEEEETTCSS---EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEEccCCC---cceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence            999999988753   122233456778899999999998877775 55799999988776666543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.4e-19  Score=174.60  Aligned_cols=263  Identities=8%  Similarity=-0.041  Sum_probs=184.9

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEecc--CCCCEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeEEEeecC--
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT--HLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVFDLVYSS--  323 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~~~~~~~--  323 (536)
                      ++|++++.|++|.|||+.+    ...+..+..  +...+.+++|+||| +++ ++++.++.|.+||+.+++.......  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s----~~~~~~i~~~~~~~~~~~i~~spDg-~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~   76 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEK----MAVDKVITIADAGPTPMVPMVAPGG-RIAYATVNKSESLVKIDLVTGETLGRIDLST   76 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----TEEEEEEECTTCTTCCCCEEECTTS-SEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred             eEEEEEcCCCEEEEEECCC----CeEEEEEECCCCCCCccEEEECCCC-CEEEEEECCCCeEEEEECCCCcEEEEEecCC
Confidence            5899999999999999998    667776654  34567899999999 776 5667899999999999877654432  


Q ss_pred             ----CCceeEEEecCCCCCEEEEEE------------CCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe
Q 009380          324 ----EYAVFSLSQQPNNVNTLYFGE------------GQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS  387 (536)
Q Consensus       324 ----~~~i~~l~~~~~~~~~l~~g~------------~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s  387 (536)
                          ...+..++|+|++ ..++++.            .++.+.+||..+++.+..+. +...+.+++|+|++ .++++++
T Consensus        77 ~~~~~~~~~~v~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg-~~l~~~~  153 (337)
T d1pbyb_          77 PEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDG-SKLYGLG  153 (337)
T ss_dssp             TTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTS-SCEEEES
T ss_pred             CcccccceeeEEEcCCC-cEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCC-CEEEEEc
Confidence                2345689999998 6776665            35689999999998887776 45668899999988 5666665


Q ss_pred             CCCcEEEEeCCCCCCCCCCcceeecccCc------------------------eeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          388 TDGTACIWDLRSMATDKPEPMKVLSHKRA------------------------VHSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       388 ~dg~i~iwdl~~~~~~~~~~~~~~~~~~~------------------------v~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                        +.+.+||..+++     ......+...                        +.......+...+...+.++.+.+||.
T Consensus       154 --~~~~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (337)
T d1pbyb_         154 --RDLHVMDPEAGT-----LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             --SSEEEEETTTTE-----EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred             --CCcceeeeecCc-----EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEc
Confidence              447889988753     1111111111                        111111112222233344556889998


Q ss_pred             CCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEE
Q 009380          444 VNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAG  523 (536)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~las  523 (536)
                      .++..........  ...  .....+++++.+++++  ++.|++||+.+++.+..+...+.   +..++|+| ++.+|++
T Consensus       227 ~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~s~-dG~~l~v  296 (337)
T d1pbyb_         227 ETGEMAMREVRIM--DVF--YFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS---YYSVNVST-DGSTVWL  296 (337)
T ss_dssp             TTCCEEEEEEEEC--SSC--EEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC---CCEEEECT-TSCEEEE
T ss_pred             CCCcEEEEEecCC--Ccc--eEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCC---EEEEEECC-CCCEEEE
Confidence            8776544332221  112  2235678999888776  57899999999998888764332   24688999 6799999


Q ss_pred             EccCCeEEEEecC
Q 009380          524 ATGGGQVYVWTSD  536 (536)
Q Consensus       524 gs~Dg~v~iW~~d  536 (536)
                      ++.||.|+|||++
T Consensus       297 ~~~~~~i~v~D~~  309 (337)
T d1pbyb_         297 GGALGDLAAYDAE  309 (337)
T ss_dssp             ESBSSEEEEEETT
T ss_pred             EeCCCcEEEEECC
Confidence            9999999999974

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=3.1e-20  Score=180.11  Aligned_cols=271  Identities=9%  Similarity=-0.010  Sum_probs=187.6

Q ss_pred             EEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEE-EEEECCCeEEEEECCCCeE
Q 009380          240 MKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKI-FTSCYDGLIRLMDAEKEVF  317 (536)
Q Consensus       240 v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l-~s~s~dg~I~vwd~~~~~~  317 (536)
                      ++|++  ++++|++++.+++|.+||+.+    .+.+..+. .|...+.+++|+||+ +++ ++++.++.|.+||+.+++.
T Consensus         2 ~a~~~--~~~~l~~~~~~~~v~v~D~~t----~~~~~t~~~~~~~~p~~l~~spDG-~~l~v~~~~~~~v~~~d~~t~~~   74 (346)
T d1jmxb_           2 PALKA--GHEYMIVTNYPNNLHVVDVAS----DTVYKSCVMPDKFGPGTAMMAPDN-RTAYVLNNHYGDIYGIDLDTCKN   74 (346)
T ss_dssp             CCCCT--TCEEEEEEETTTEEEEEETTT----TEEEEEEECSSCCSSCEEEECTTS-SEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCC--CCcEEEEEcCCCEEEEEECCC----CCEEEEEEcCCCCCcceEEECCCC-CEEEEEECCCCcEEEEeCccCee
Confidence            46778  999999999999999999998    67777776 466678899999999 665 5666899999999999877


Q ss_pred             EEeecCC-------CceeEEEecCCCCCEEEEEE------------CCCeEEEEECCCCccceeEec--cCCCeEEEEEe
Q 009380          318 DLVYSSE-------YAVFSLSQQPNNVNTLYFGE------------GQGGLNIWDVRSRKSATEWLL--HEARINTIDFN  376 (536)
Q Consensus       318 ~~~~~~~-------~~i~~l~~~~~~~~~l~~g~------------~dg~i~i~d~~~~~~~~~~~~--h~~~i~~i~~~  376 (536)
                      .......       ..+..++|+|++ .++++++            .++.+.+||..+++....+..  ....+..+.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (346)
T d1jmxb_          75 TFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  153 (346)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             eeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEec
Confidence            6544321       246789999999 6776654            467899999988776554442  23456667777


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCC--------------------------eEE
Q 009380          377 PRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGS--------------------------SLA  430 (536)
Q Consensus       377 p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~--------------------------~l~  430 (536)
                      +++ .++++ +  +.+.+||+.+++     .............+.++|++.                          .++
T Consensus       154 ~~~-~~~~~-~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (346)
T d1jmxb_         154 DDG-SLYVA-G--PDIYKMDVKTGK-----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA  224 (346)
T ss_dssp             TTS-CEEEE-S--SSEEEECTTTCC-----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------C
T ss_pred             CCC-EEEEe-C--CcceEEEccCCC-----EEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEe
Confidence            755 45543 2  468999988753     222222222333334444333                          233


Q ss_pred             EEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380          431 TTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       431 t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      ++..+..+.+||+.++...........  .  ....+.+++++.+++.+.. +.|.+||..+++.+..+...+.   ...
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~---~~~  296 (346)
T d1jmxb_         225 TADLLYGYLSVDLKTGKTHTQEFADLT--E--LYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHT---YYC  296 (346)
T ss_dssp             CCEEEEEEEEEETTTCCEEEEEEEECS--S--CEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSC---CCE
T ss_pred             eccCCceEEEEECCCCceEEEEeeccc--c--eeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCC---EEE
Confidence            344455677788776665444322211  1  1223567888888777664 5799999999988887764332   246


Q ss_pred             EeecCCCCCEEEEEccCCeEEEEecC
Q 009380          511 FHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                      ++|+| |+.+|++++.||.|+|||++
T Consensus       297 va~s~-DG~~l~v~~~d~~v~v~D~~  321 (346)
T d1jmxb_         297 VAFDK-KGDKLYLGGTFNDLAVFNPD  321 (346)
T ss_dssp             EEECS-SSSCEEEESBSSEEEEEETT
T ss_pred             EEEcC-CCCEEEEEeCCCcEEEEECc
Confidence            88999 68999999999999999974

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=6.4e-18  Score=162.90  Aligned_cols=283  Identities=10%  Similarity=0.108  Sum_probs=184.0

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECCCCe----EEEeecC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKEV----FDLVYSS  323 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~~----~~~~~~~  323 (536)
                      ..+++++.+++|++|++....  ...+.....|.+.+..|+|+||| ++|++++ .|+.|++|++....    .......
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~--~l~~~~~~~~~~~v~~la~spDG-~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEG--ALTLTQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEcCCC--CeEEEEEEcCCCCEeEEEEeCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            456788899999999998631  11233334688899999999999 8776555 58999999997642    2222345


Q ss_pred             CCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCcccee--EeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATE--WLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~--~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      ...+..++|+|++ ++|++++ .++.|.+|+.........  ...+...+.++.++|++..+++....+..|.+|+....
T Consensus        82 ~~~p~~l~~spDg-~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          82 PGSLTHISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             SSCCSEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             CCCceEEEEcCCC-CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            5668889999999 7777776 467899998876654333  33567788899999988544444445677999998764


Q ss_pred             CCCCCCcc--eeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceE----Eec-cCCCCceeeeeEEEEcCC
Q 009380          401 ATDKPEPM--KVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSM----IHH-NNQTGRWISSFRAIWGWD  472 (536)
Q Consensus       401 ~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~----~~~-~~~~~~~~~~~~~~~s~~  472 (536)
                      ........  ...........++|++++.+++... ..+...+|+.........    +.. ..............++++
T Consensus       161 ~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  240 (333)
T d1ri6a_         161 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  240 (333)
T ss_dssp             SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             CcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecc
Confidence            31100000  1113445668899999998877665 456688887654332211    111 111111122233668999


Q ss_pred             CCEEEEE-cCCCcEEEEcCCccccceeccCCce-eeeeeeEeecCCCCCEEEEEc-cCCeEEEEecC
Q 009380          473 DSCVFIG-NMTRTVEVISPAQRRSVATLQSPYI-SAIPCRFHAHPHQVGTLAGAT-GGGQVYVWTSD  536 (536)
Q Consensus       473 g~~l~~g-s~dg~I~v~d~~~~~~~~~l~~~~~-~~~~~~~~~~p~~~~~lasgs-~Dg~v~iW~~d  536 (536)
                      ++++++. ..++.+.+|++........+..... ...+..++|+| |+++|++++ .++.|.||++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         241 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEE
T ss_pred             cCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEE
Confidence            9876554 5567899998876654444332211 12234678999 678776654 57899999764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.81  E-value=8e-19  Score=169.90  Aligned_cols=282  Identities=9%  Similarity=0.027  Sum_probs=196.5

Q ss_pred             eecCCCCcccccccccccccccccccceEEecccccCccc-cccc-cCCceEEEEEEecCCccEE-EEEeCCCcEEEEEC
Q 009380          189 CKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN-IARI-MPGRITQMKFLPCSDVRMV-VAGSKLGNITFWNL  265 (536)
Q Consensus       189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~-~~~~-~~~~I~~v~~~p~~~~~~l-~tg~~dg~v~iwd~  265 (536)
                      +.+++++++++.          +..++.|.+||+...... ..+. +...+.+++|+|  ||+++ +++..++.|.+||+
T Consensus         2 ~a~~~~~~~l~~----------~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp--DG~~l~v~~~~~~~v~~~d~   69 (346)
T d1jmxb_           2 PALKAGHEYMIV----------TNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNNHYGDIYGIDL   69 (346)
T ss_dssp             CCCCTTCEEEEE----------EETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEETTTTEEEEEET
T ss_pred             ccCCCCCcEEEE----------EcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC--CCCEEEEEECCCCcEEEEeC
Confidence            467888888884          477889999998654322 1222 355788999999  99876 55667899999999


Q ss_pred             CCCCCCCCceEEeccCC------CCEEEEEEecCCCCEEEEEE------------CCCeEEEEECCCCeEEE---eecCC
Q 009380          266 DSQQDEDNGIYLFRTHL------GPISGIVTQQYCLSKIFTSC------------YDGLIRLMDAEKEVFDL---VYSSE  324 (536)
Q Consensus       266 ~~~~~~~~~~~~~~~h~------~~V~~l~~~~~~~~~l~s~s------------~dg~I~vwd~~~~~~~~---~~~~~  324 (536)
                      .+    ...+..+....      ..+..++|+|+| .++++++            .++.+.+|+..++....   .....
T Consensus        70 ~t----~~~~~~~~~~~~~~~~~~~~~~v~~s~DG-~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  144 (346)
T d1jmxb_          70 DT----CKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  144 (346)
T ss_dssp             TT----TEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             cc----CeeeeeecccccccccCCceEEEEEecCC-CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc
Confidence            97    55555544322      235678999999 8877665            47788999988764332   22334


Q ss_pred             CceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCC------------------------
Q 009380          325 YAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNP------------------------  380 (536)
Q Consensus       325 ~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~------------------------  380 (536)
                      ..+..+.+++++ .+++.   ++.+.+||+.+++.+..+..+. ....+.++|++.                        
T Consensus       145 ~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (346)
T d1jmxb_         145 RQVYLMRAADDG-SLYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  219 (346)
T ss_dssp             SSCCCEEECTTS-CEEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CceEEEEecCCC-EEEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence            556667777765 44443   3568999999888777765332 223333444332                        


Q ss_pred             -CEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCC
Q 009380          381 -NIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTG  459 (536)
Q Consensus       381 -~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~  459 (536)
                       ..++++..++.+.+||+.++.   ........|...+..+.+++++.+++... ++.|.+||..+++.+..+.+..   
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~---  292 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGK---THTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDH---  292 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCC---EEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSS---
T ss_pred             ceeEeeccCCceEEEEECCCCc---eEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCC---
Confidence             223334445667888887753   12233346888899999999888887766 4579999999988877775432   


Q ss_pred             ceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          460 RWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       460 ~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                       .  ...++|+|||++|++++.|+.|.|||..+++.+.++..+
T Consensus       293 -~--~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         293 -T--YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             -C--CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             -C--EEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence             1  233789999999999999999999999999999887743

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.7e-17  Score=159.90  Aligned_cols=277  Identities=14%  Similarity=0.156  Sum_probs=184.9

Q ss_pred             cccccceEEecccccCcc-cccc--ccCCceEEEEEEecCCccEEEEE-eCCCcEEEEECCCCCCCCCceEEeccCCCCE
Q 009380          210 KIEVGSCVDIGSLTLKPE-NIAR--IMPGRITQMKFLPCSDVRMVVAG-SKLGNITFWNLDSQQDEDNGIYLFRTHLGPI  285 (536)
Q Consensus       210 ~~~~dg~v~lw~~~~~~~-~~~~--~~~~~I~~v~~~p~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V  285 (536)
                      ....++.|++|++..... ...+  .|.+.|..|+|+|  ||++|+++ ..|+.|.+|++..... .........+...+
T Consensus         9 ~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~-~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAESALPGSL   85 (333)
T ss_dssp             EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEECSSCC
T ss_pred             ECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCC-cEEEeeecccCCCc
Confidence            456788999999864432 2233  5789999999999  99988555 4589999999986321 11122223344567


Q ss_pred             EEEEEecCCCCEEEEEEC-CCeEEEEECCCCeEE---EeecCCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCccc
Q 009380          286 SGIVTQQYCLSKIFTSCY-DGLIRLMDAEKEVFD---LVYSSEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSA  360 (536)
Q Consensus       286 ~~l~~~~~~~~~l~s~s~-dg~I~vwd~~~~~~~---~~~~~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~  360 (536)
                      ..++|+|+| ++|++++. ++.|.+|+.......   ....+...+.++.++|++ +.+++++ .+..|.+|+.......
T Consensus        86 ~~l~~spDg-~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~-~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          86 THISTDHQG-QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             SEEEECTTS-SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             eEEEEcCCC-CEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc-eeeeccccccceeeEEEeccCCcc
Confidence            789999999 88888875 678999998766433   233456778899999998 6666655 5567999998765432


Q ss_pred             eeE------eccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCccee------ecccCceeEEEEccCCCe
Q 009380          361 TEW------LLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKV------LSHKRAVHSAYFSPSGSS  428 (536)
Q Consensus       361 ~~~------~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~------~~~~~~v~~l~~sp~g~~  428 (536)
                      ...      .........+.|++++...+.+....+...+|++.............      .........+.+++++++
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            221      13445678899999885555566667788888876532111010111      113345677899999987


Q ss_pred             EEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcC--Ccc
Q 009380          429 LATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISP--AQR  493 (536)
Q Consensus       429 l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~--~~~  493 (536)
                      ++.. ..++.+.+|++........+......+....  .++|+|||++|++++. ++.|.+|++  .+|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~a~spDGk~l~va~~~~~~v~v~~id~~tG  310 (333)
T d1ri6a_         244 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPR--GFNVDHSGKYLIAAGQKSHHISVYEIVGEQG  310 (333)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCC--CEEECTTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred             eeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCee--EEEEeCCCCEEEEEECCCCeEEEEEEECCCC
Confidence            6665 4677899999876655544432222222222  2679999999877654 588999955  555

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=2e-16  Score=155.15  Aligned_cols=287  Identities=10%  Similarity=-0.002  Sum_probs=190.3

Q ss_pred             cccCCceEEEEEEecCCccEEEEE-----eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE---
Q 009380          231 RIMPGRITQMKFLPCSDVRMVVAG-----SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC---  302 (536)
Q Consensus       231 ~~~~~~I~~v~~~p~~~~~~l~tg-----~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s---  302 (536)
                      ..+.+++.+++++|  |++.+++.     +..+.|.+||..+    ++.+..+..+..+  .++|+||| .+|++++   
T Consensus        17 ~~~~~p~~~~a~sp--dg~~~~~~~~~~~~~~~~v~v~D~~t----g~~~~~~~~~~~~--~~a~SpDG-~~l~va~~~~   87 (373)
T d2madh_          17 GAADGPTNDEAPGA--DGRRSYINLPAHHSAIIQQWVLDAGS----GSILGHVNGGFLP--NPVAAHSG-SEFALASTSF   87 (373)
T ss_pred             ccCCCCccccccCC--CCCEEEEEcccccCCCceEEEEECCC----CCEEEEEeCCCCc--cEEEcCCC-CEEEEEeecC
Confidence            45778899999999  99988764     2346799999887    6777777766544  79999999 8888775   


Q ss_pred             -------CCCeEEEEECCCCeEEEeecC-CC-------ceeEEEecCCCCCEEEEE--ECCCeEEEEECCCCccceeEec
Q 009380          303 -------YDGLIRLMDAEKEVFDLVYSS-EY-------AVFSLSQQPNNVNTLYFG--EGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       303 -------~dg~I~vwd~~~~~~~~~~~~-~~-------~i~~l~~~~~~~~~l~~g--~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                             .++.|.+||+.+++....... ..       ....+.|++++ ..+++.  ..++.+.+|+....+...    
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~----  162 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVVQGGSSDDQ----  162 (373)
T ss_pred             CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC-CcEEEEEEcCCCceEEeeccCCeEEE----
Confidence                   357899999999877544432 22       22457788887 444433  345678888887665433    


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee--cccCceeEEEEccCCCeEEEEeCCCcEEEEeC
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL--SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSG  443 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~--~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~  443 (536)
                      +.....++.++|++...+++.+.|+.+.+||...............  .+......+.+++++. ++..+.++.+.+|+.
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~  241 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADI  241 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEc
Confidence            3345678899999988889999999999999987542111111111  1222344556666664 556677889999998


Q ss_pred             CCCCcceEEeccCCCCcee-------eeeEEEEcCCCCE----------EEEEcCCCcEEEEcCCccccceeccCCceee
Q 009380          444 VNFENTSMIHHNNQTGRWI-------SSFRAIWGWDDSC----------VFIGNMTRTVEVISPAQRRSVATLQSPYISA  506 (536)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~g~~----------l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~  506 (536)
                      ...................       ......+++++..          ++....++.|.+||..+++.+..+...+.  
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~--  319 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD--  319 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCC--
Confidence            7664332222111110000       0011334555444          44556677899999999998888764332  


Q ss_pred             eeeeEeecCCCCC--EEEEEccCCeEEEEecC
Q 009380          507 IPCRFHAHPHQVG--TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       507 ~~~~~~~~p~~~~--~lasgs~Dg~v~iW~~d  536 (536)
                       ...+.|+| |++  ++++++.|+.|+|||+.
T Consensus       320 -~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         320 -VDAISVAQ-DGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             -eeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence             24578888 556  45789999999999974

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=9e-16  Score=150.39  Aligned_cols=301  Identities=8%  Similarity=-0.070  Sum_probs=198.5

Q ss_pred             ccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEe-----
Q 009380          181 DEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGS-----  255 (536)
Q Consensus       181 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~-----  255 (536)
                      .+...+..+.++|||+.+......     .....+.|.+||..... .+.....+....++|+|  ||++|++++     
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~-----~~~~~~~v~v~D~~tg~-~~~~~~~~~~~~~a~Sp--DG~~l~va~~~~~~   89 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPA-----HHSAIIQQWVLDAGSGS-ILGHVNGGFLPNPVAAH--SGSEFALASTSFSR   89 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEccc-----ccCCCceEEEEECCCCC-EEEEEeCCCCccEEEcC--CCCEEEEEeecCCc
Confidence            455677888999999987633110     11233567788764332 22223334445799999  999998875     


Q ss_pred             -----CCCcEEEEECCCCCCCCCceEEeccCCCCE-------EEEEEecCCCCEEEEEE--CCCeEEEEECCCCeEEEee
Q 009380          256 -----KLGNITFWNLDSQQDEDNGIYLFRTHLGPI-------SGIVTQQYCLSKIFTSC--YDGLIRLMDAEKEVFDLVY  321 (536)
Q Consensus       256 -----~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V-------~~l~~~~~~~~~l~s~s--~dg~I~vwd~~~~~~~~~~  321 (536)
                           .++.|.+||+.+    .+.+..+..+....       ..+.|++++ ..++...  .++.+.+|+......... 
T Consensus        90 ~~~~~~~~~v~v~D~~t----~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~~-  163 (373)
T d2madh_          90 IAKGKRTDYVEVFDPVT----FLPIADIELPDAPRFDVGPYSWMNANTPNN-ADLLFFQFAAGPAVGLVVQGGSSDDQL-  163 (373)
T ss_pred             ccccccceEEEEEECCC----CcEEEEEecCCcceeEeccCCCcEEEEeCC-CcEEEEEEcCCCceEEeeccCCeEEEE-
Confidence                 457899999998    56666665554433       457788888 5554443  456788888887655433 


Q ss_pred             cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccC------CCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          322 SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHE------ARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       322 ~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~------~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                        .....++.++|++...+++.+.||.+.+||...+........+.      .....+.+.++  ..++..+.++.+.+|
T Consensus       164 --~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~  239 (373)
T d2madh_         164 --LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS--GRIVWPVYSGKILQA  239 (373)
T ss_pred             --eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC--ceEEEecCCceEEEE
Confidence              33467889999997777889999999999999887765544221      22334455553  356666778999999


Q ss_pred             eCCCCCCCCCC--------cceeecccCceeEEEEccCCCe----------EEEEeCCCcEEEEeCCCCCcceEEeccCC
Q 009380          396 DLRSMATDKPE--------PMKVLSHKRAVHSAYFSPSGSS----------LATTSFDDTIGIWSGVNFENTSMIHHNNQ  457 (536)
Q Consensus       396 dl~~~~~~~~~--------~~~~~~~~~~v~~l~~sp~g~~----------l~t~s~dg~I~iwd~~~~~~~~~~~~~~~  457 (536)
                      +..........        .............+++++++..          +++...++.|.+||..+++.+..+.+.. 
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~-  318 (373)
T d2madh_         240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-  318 (373)
T ss_pred             EcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCC-
Confidence            98875310000        0000011223344556665554          3455667789999999998887775432 


Q ss_pred             CCceeeeeEEEEcCCCCE--EEEEcCCCcEEEEcCCccccceeccCCcee
Q 009380          458 TGRWISSFRAIWGWDDSC--VFIGNMTRTVEVISPAQRRSVATLQSPYIS  505 (536)
Q Consensus       458 ~~~~~~~~~~~~s~~g~~--l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~  505 (536)
                         ...  .+.|+|||+.  +++++.|+.|+|||+.+++.+..+..+...
T Consensus       319 ---~~~--~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~  363 (373)
T d2madh_         319 ---DVD--AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG  363 (373)
T ss_pred             ---Cee--EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCC
Confidence               222  3779999984  467889999999999999999998754433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=7.3e-17  Score=157.03  Aligned_cols=276  Identities=12%  Similarity=0.047  Sum_probs=180.5

Q ss_pred             EEEEEEecCCccEEEEEe-----CCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEE----------E
Q 009380          238 TQMKFLPCSDVRMVVAGS-----KLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTS----------C  302 (536)
Q Consensus       238 ~~v~~~p~~~~~~l~tg~-----~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~----------s  302 (536)
                      .-.+.+|  |+..+++..     .+++|.+||..+    +..+..+..+..+  .++|+||+ ++|+++          +
T Consensus         5 ~~~a~sp--dg~~~~v~~~~~~~~~~~v~v~D~~t----g~~~~~~~~g~~~--~~a~SpDg-~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_           5 ILEAPAP--DARRVYVNDPAHFAAVTQQFVIDGEA----GRVIGMIDGGFLP--NPVVADDG-SFIAHASTVFSRIARGE   75 (355)
T ss_dssp             BCCCCCC--CTTEEEEEECGGGCSSEEEEEEETTT----TEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEE
T ss_pred             EeEeeCC--CCCEEEEEecccCCCcCeEEEEECCC----CcEEEEEECCCCC--ceEEcCCC-CEEEEEeCCCccccccC
Confidence            3345578  888887653     355799999987    6777777766544  79999999 777654          3


Q ss_pred             CCCeEEEEECCCCeEEEeec--------CCCceeEEEecCCCCCEEEEEE--CCCeEEEEECCCCccceeEeccCC----
Q 009380          303 YDGLIRLMDAEKEVFDLVYS--------SEYAVFSLSQQPNNVNTLYFGE--GQGGLNIWDVRSRKSATEWLLHEA----  368 (536)
Q Consensus       303 ~dg~I~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~l~~g~--~dg~i~i~d~~~~~~~~~~~~h~~----  368 (536)
                      .|+.|++||+.+++......        .......++|++++ ..++++.  .+..+.+||..+++.+..+..+..    
T Consensus        76 ~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (355)
T d2bbkh_          76 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF  154 (355)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe
Confidence            47899999999987654432        12234678999998 6666654  456899999999988777764332    


Q ss_pred             ---CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 009380          369 ---RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN  445 (536)
Q Consensus       369 ---~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~  445 (536)
                         ....+.+++++..+++....++.+.+++.....         ..+...+....+.+++..++.++.++.+++|++..
T Consensus       155 ~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  225 (355)
T d2bbkh_         155 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS  225 (355)
T ss_dssp             EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS---------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred             ecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc---------ceecceeeeccccCCCCeEEEecCCCeEEEEecCC
Confidence               122344455443333333334444444433321         12344556677888888899999999999999987


Q ss_pred             CCcceEEeccCCC------C-ceeeeeEEEEcCCCCEEEEEcCC----------CcEEEEcCCccccceeccCCceeeee
Q 009380          446 FENTSMIHHNNQT------G-RWISSFRAIWGWDDSCVFIGNMT----------RTVEVISPAQRRSVATLQSPYISAIP  508 (536)
Q Consensus       446 ~~~~~~~~~~~~~------~-~~~~~~~~~~s~~g~~l~~gs~d----------g~I~v~d~~~~~~~~~l~~~~~~~~~  508 (536)
                      +............      . ..-....+.+++++..++....+          +.|.+||..+++.+..+..++.   +
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~---~  302 (355)
T d2bbkh_         226 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---I  302 (355)
T ss_dssp             SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE---E
T ss_pred             CcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCC---E
Confidence            6532211100000      0 00001125678999887776443          4699999999998888764322   3


Q ss_pred             eeEeecCCCCC--EEEEEccCCeEEEEecC
Q 009380          509 CRFHAHPHQVG--TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       509 ~~~~~~p~~~~--~lasgs~Dg~v~iW~~d  536 (536)
                      ..+.|+| |++  ++++++.|+.|+|||++
T Consensus       303 ~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         303 DSINVSQ-DEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             CEEEECC-SSSCEEEEEETTTTEEEEEETT
T ss_pred             EEEEEcC-CCCeEEEEEECCCCEEEEEECC
Confidence            4688999 555  46778889999999974

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=1.6e-15  Score=147.36  Aligned_cols=289  Identities=7%  Similarity=-0.068  Sum_probs=183.4

Q ss_pred             eecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEE----------eCCC
Q 009380          189 CKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAG----------SKLG  258 (536)
Q Consensus       189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg----------~~dg  258 (536)
                      ...+||++.+... ...    .....+.|.+||.... ..+.....+.+..++|+|  ||++|++.          +.++
T Consensus         7 ~a~spdg~~~~v~-~~~----~~~~~~~v~v~D~~tg-~~~~~~~~g~~~~~a~Sp--Dg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           7 EAPAPDARRVYVN-DPA----HFAAVTQQFVIDGEAG-RVIGMIDGGFLPNPVVAD--DGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CCCCCCTTEEEEE-ECG----GGCSSEEEEEEETTTT-EEEEEEEECSSCEEEECT--TSSCEEEEEEEEEETTEEEEEE
T ss_pred             EeeCCCCCEEEEE-ecc----cCCCcCeEEEEECCCC-cEEEEEECCCCCceEEcC--CCCEEEEEeCCCccccccCCCC
Confidence            3567888877422 000    1234568999997543 223344455666899999  99988764          4578


Q ss_pred             cEEEEECCCCCCCCCceEEeccCC-------CCEEEEEEecCCCCEEEEEE--CCCeEEEEECCCCeEEEeecCCCceeE
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHL-------GPISGIVTQQYCLSKIFTSC--YDGLIRLMDAEKEVFDLVYSSEYAVFS  329 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~~l~s~s--~dg~I~vwd~~~~~~~~~~~~~~~i~~  329 (536)
                      .|.+||+.+    ...+..+..+.       .....+.|++++ .+++.++  .+..+.+|+..++..............
T Consensus        79 ~v~v~D~~t----~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (355)
T d2bbkh_          79 YVEVFDPVT----LLPTADIELPDAPRFLVGTYPWMTSLTPDG-KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI  153 (355)
T ss_dssp             EEEEECTTT----CCEEEEEEETTCCCCCBSCCGGGEEECTTS-SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEEEECCC----CCEEEEEecCCcceeecCCCCceEEEecCC-CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE
Confidence            999999997    55555544332       223568999999 7777665  467899999999877655543332221


Q ss_pred             EEecCCCCCEEEEEECCCeEEEEECCCCccceeEe------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 009380          330 LSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATD  403 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~  403 (536)
                      ...   +....+..+.||...++.......+..+.      .+...+....+.+++ ..++.++.++.+++|++..+...
T Consensus       154 ~~~---~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~  229 (355)
T d2bbkh_         154 FPT---APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAK  229 (355)
T ss_dssp             EEE---ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCE
T ss_pred             eec---CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEE
Confidence            111   11233334444444444433322221111      233445566777766 57888899999999999875411


Q ss_pred             CCCcceeec----------ccCceeEEEEccCCCeEEEEeCC----------CcEEEEeCCCCCcceEEeccCCCCceee
Q 009380          404 KPEPMKVLS----------HKRAVHSAYFSPSGSSLATTSFD----------DTIGIWSGVNFENTSMIHHNNQTGRWIS  463 (536)
Q Consensus       404 ~~~~~~~~~----------~~~~v~~l~~sp~g~~l~t~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~  463 (536)
                      .  ......          .......+++++++..++....+          +.|.+||..+++.+..+....    .  
T Consensus       230 ~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~----~--  301 (355)
T d2bbkh_         230 F--LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH----E--  301 (355)
T ss_dssp             E--CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE----E--
T ss_pred             E--EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC----C--
Confidence            0  001111          12334568899999888776543          369999999998877765422    2  


Q ss_pred             eeEEEEcCCCC--EEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          464 SFRAIWGWDDS--CVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       464 ~~~~~~s~~g~--~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      ...++|+|||+  ++++++.|+.|.|||..+++.+.++.++
T Consensus       302 ~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         302 IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            23477999997  3566778999999999999999988754

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=3.7e-13  Score=131.52  Aligned_cols=284  Identities=8%  Similarity=-0.071  Sum_probs=178.3

Q ss_pred             cCCceEEEEEEecCCccE--EE-EEeCCCc--EEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE-----
Q 009380          233 MPGRITQMKFLPCSDVRM--VV-AGSKLGN--ITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC-----  302 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~--l~-tg~~dg~--v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s-----  302 (536)
                      +.+....++..+  +++.  ++ ....+|.  |.+||..+    ...+..+..+..+  .++|+|++ ..|++++     
T Consensus        18 ~~g~~~~~a~~~--~~~~~~v~~~~~~~g~~~~~~~d~~~----~~~~~~~~~~~~~--~~a~spDg-~~i~~~~~~~~~   88 (368)
T d1mdah_          18 SDGSSCDHGPGA--ISRRSHITLPAYFAGTTENWVSCAGC----GVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFAR   88 (368)
T ss_dssp             CCCCCBCCCCCC--CTTEEEEEECTTTCSSEEEEEEETTT----TEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETT
T ss_pred             cCCCccccccCC--CCcceeEEeeccCCCcceEEEEeCCC----CcEEEEEeCCCCC--cceECCCC-CEEEEEcccCcc
Confidence            344455555566  6553  33 2344455  56667776    6667777766655  58999999 7777654     


Q ss_pred             -----CCCeEEEEECCCCeEEEeec--------CCCceeEEEecCCCCCEEEEEE-CCCeEEEEECCCCccceeEeccCC
Q 009380          303 -----YDGLIRLMDAEKEVFDLVYS--------SEYAVFSLSQQPNNVNTLYFGE-GQGGLNIWDVRSRKSATEWLLHEA  368 (536)
Q Consensus       303 -----~dg~I~vwd~~~~~~~~~~~--------~~~~i~~l~~~~~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~h~~  368 (536)
                           .|+.|.+||..+++......        .......++|+|++ ++|+++. .++.+.+||+.+++.+..+..+..
T Consensus        89 ~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~  167 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLLFFLFGSSAAAGLSVPGASDDQLTKSASC  167 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred             ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence                 37789999999887654432        12234579999999 5555554 679999999999998888775544


Q ss_pred             CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCC--cceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 009380          369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPE--PMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNF  446 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~--~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~  446 (536)
                      ..    +.|.+...+++.+.||.+.+|++.........  ......+...+..+.+.+++..+.+.  .+.+.+++....
T Consensus       168 ~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~  241 (368)
T d1mdah_         168 FH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAA  241 (368)
T ss_dssp             CC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSS
T ss_pred             ce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCC
Confidence            32    23345567888888999999998765321100  01112345556677888887655543  455666666544


Q ss_pred             CcceEEeccCCCC-----cee--eeeEEEEcCCCCEEEEEcCC---------CcEEEEcCCccccceeccCCceeeeeee
Q 009380          447 ENTSMIHHNNQTG-----RWI--SSFRAIWGWDDSCVFIGNMT---------RTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       447 ~~~~~~~~~~~~~-----~~~--~~~~~~~s~~g~~l~~gs~d---------g~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      .............     .+.  ....+++++++..+++...+         ..|.+||..+++.+..+..+   .....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~  318 (368)
T d1mdah_         242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDA  318 (368)
T ss_dssp             CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECE
T ss_pred             ceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC---CceeE
Confidence            3322111100000     000  00125578888876665322         35999999999988887643   22356


Q ss_pred             EeecCCCCC--EEEEEccCCeEEEEecC
Q 009380          511 FHAHPHQVG--TLAGATGGGQVYVWTSD  536 (536)
Q Consensus       511 ~~~~p~~~~--~lasgs~Dg~v~iW~~d  536 (536)
                      +.|+| |++  +++++..|+.|+|||..
T Consensus       319 ~a~sp-DG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         319 IIAAQ-DGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred             EEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence            88998 554  45677889999999963

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.48  E-value=7.6e-13  Score=129.27  Aligned_cols=247  Identities=9%  Similarity=-0.025  Sum_probs=159.6

Q ss_pred             eEEEEEEecCCccEEEEEe----------CCCcEEEEECCCCCCCCCceEEeccCCC-------CEEEEEEecCCCCEEE
Q 009380          237 ITQMKFLPCSDVRMVVAGS----------KLGNITFWNLDSQQDEDNGIYLFRTHLG-------PISGIVTQQYCLSKIF  299 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~----------~dg~v~iwd~~~~~~~~~~~~~~~~h~~-------~V~~l~~~~~~~~~l~  299 (536)
                      ...++|+|  ||+.|++.+          .|+.|.+||..+    ...+..+..+..       ....++|+||| ++|+
T Consensus        67 ~~~~a~sp--Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t----~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-k~l~  139 (368)
T d1mdah_          67 LSLAVAGH--SGSDFALASTSFARSAKGKRTDYVEVFDPVT----FLPIADIELPDAPRFSVGPRVHIIGNCASS-ACLL  139 (368)
T ss_dssp             TCEEEECT--TSSCEEEEEEEETTTTSSSEEEEEEEECTTT----CCEEEEEEETTSCSCCBSCCTTSEEECTTS-SCEE
T ss_pred             CCcceECC--CCCEEEEEcccCccccccccCCeEEEEECCC----CcEeeeecCCccceecccCCccceEECCCC-CEEE
Confidence            44689999  999888764          367899999987    566655543322       23468999999 7777


Q ss_pred             EEE-CCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE------eccCCCeEE
Q 009380          300 TSC-YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW------LLHEARINT  372 (536)
Q Consensus       300 s~s-~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------~~h~~~i~~  372 (536)
                      ++. .++.|.+||+.+++...........   .+.+.+...++..+.||.+.++++.........      ..+...+..
T Consensus       140 va~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (368)
T d1mdah_         140 FFLFGSSAAAGLSVPGASDDQLTKSASCF---HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             EEECSSSCEEEEEETTTEEEEEEECSSCC---CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             EEeCCCCeEEEEECCCCcEeEEeeccCcc---eEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceee
Confidence            665 5799999999998876655433222   123334467777888889888888765432221      233444556


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCC------Cc--ceeecccCceeEEEEccCCCeEEEEeCC---------
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSMATDKP------EP--MKVLSHKRAVHSAYFSPSGSSLATTSFD---------  435 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~------~~--~~~~~~~~~v~~l~~sp~g~~l~t~s~d---------  435 (536)
                      +.+.+++ ..+.+.  .+.++++++........      ..  ............++++|++..+++...+         
T Consensus       217 ~~~~~~g-~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~  293 (368)
T d1mdah_         217 AQANYPG-MLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             EEETTTT-EEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             cccccCc-EEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCC
Confidence            6777765 333333  45677777665321000      00  0000012234568899988877665322         


Q ss_pred             CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE--EEEEcCCCcEEEEcCCccccceeccCC
Q 009380          436 DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC--VFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       436 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~--l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      ..|.+||..+++.+..+...    .  ....+.|+|||+.  ++++..++.|+|||..+++.+.++..+
T Consensus       294 ~~v~v~D~~t~~~~~~~~~~----~--~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         294 ENTSSVTASVGQTSGPISNG----H--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEE----E--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ceEEEEECCCCcEeEEecCC----C--ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            35999999998877666432    1  2233789999973  456677899999999999999888753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.43  E-value=1.9e-12  Score=126.91  Aligned_cols=244  Identities=9%  Similarity=-0.002  Sum_probs=158.8

Q ss_pred             cCCceEEEEEEecCCccEEEEEe-CCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEECCCe----
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGS-KLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSCYDGL----  306 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~----  306 (536)
                      |.-.+....++|  ||++|++.. .++.|.++|+.+    .+....+. .+...+..++|+|++....+++..+..    
T Consensus        70 hhP~~s~t~gtp--DGr~lfV~d~~~~rVavIDl~t----~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~  143 (441)
T d1qnia2          70 HHPHISMTDGRY--DGKYLFINDKANTRVARIRLDI----MKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQP  143 (441)
T ss_dssp             CCCEEEEETTEE--EEEEEEEEETTTTEEEEEETTT----TEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESS
T ss_pred             cCCCcceecccC--CCCEEEEEcCCCCEEEEEECCC----CcEeeEEecCCCCCccceEEeccCCEEEEEeccCCccccc
Confidence            334566666789  999986664 678999999998    55555443 467789999999998333333333333    


Q ss_pred             --------------EEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC--------------------------
Q 009380          307 --------------IRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--------------------------  346 (536)
Q Consensus       307 --------------I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--------------------------  346 (536)
                                    +..+|..+...............+.++|++ .++++.+.+                          
T Consensus       144 ~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdG-k~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~  222 (441)
T d1qnia2         144 NDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTG-KYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI  222 (441)
T ss_dssp             CSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHH
T ss_pred             CcccccccccccceEEeecCccceeeEEEecCCCccceEECCCC-CEEEEEecCCCceEEEeccCcceEEEEEeCCccce
Confidence                          345777776665555555678899999999 677776643                          


Q ss_pred             ---------------CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC----CCCCc
Q 009380          347 ---------------GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT----DKPEP  407 (536)
Q Consensus       347 ---------------g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~----~~~~~  407 (536)
                                     +.+.+++....+.+..+... .....+.++|||.++++++..+++|.+||+.+...    .....
T Consensus       223 ~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         223 AAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             EEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence                           23333333444445555543 33577999999977778888999999999876321    00001


Q ss_pred             ceee---cccCceeEEEEccCCCeEEEEeCCCcEEEEeCCC------CC----cceEEeccCCCCceeeeeEEEEcCCCC
Q 009380          408 MKVL---SHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVN------FE----NTSMIHHNNQTGRWISSFRAIWGWDDS  474 (536)
Q Consensus       408 ~~~~---~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~------~~----~~~~~~~~~~~~~~~~~~~~~~s~~g~  474 (536)
                      ..+.   ...-......|+++|..+.+...|..|..|++..      +.    ....+....+.++........++|||+
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            1111   1223456678999998888888999999999741      11    122222223345444555567899999


Q ss_pred             EEEEE---cCCCc
Q 009380          475 CVFIG---NMTRT  484 (536)
Q Consensus       475 ~l~~g---s~dg~  484 (536)
                      ||+++   +.|+.
T Consensus       382 ~l~s~~k~s~dr~  394 (441)
T d1qnia2         382 WLVVLSKFSKDRF  394 (441)
T ss_dssp             EEEEEESCCGGGS
T ss_pred             EEEecCccccccC
Confidence            99999   55554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.43  E-value=3.4e-12  Score=128.96  Aligned_cols=307  Identities=7%  Similarity=-0.055  Sum_probs=178.4

Q ss_pred             ceecccccceeeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC
Q 009380          177 FVIKDEFNGFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK  256 (536)
Q Consensus       177 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~  256 (536)
                      ..+..|...|.++.|||||+.++... ...++++.+.++.+.|||+.......+..|++.+..+.|+|  ||+.||... 
T Consensus        55 ~~~~~~~~~i~~~~~SpDg~~i~~~~-~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SP--DG~~ia~~~-  130 (470)
T d2bgra1          55 STFDEFGHSINDYSISPDGQFILLEY-NYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSP--VGHKLAYVW-  130 (470)
T ss_dssp             TTTTTSSSCCCEEEECTTSSEEEEEE-EEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECS--STTCEEEEE-
T ss_pred             hhhhhccCccceeEECCCCCEEEEEE-CCcceeeeccCceEEEEECCCCcccccccCCcccccccccc--CcceeeEee-
Confidence            35567778899999999999998653 45577777888999999998777666788899999999999  999999864 


Q ss_pred             CCcEEEEECCCCCCCCCceEEecc------------------CCCCEEEEEEecCCCCEEEEEECCCe-EEEEEC-----
Q 009380          257 LGNITFWNLDSQQDEDNGIYLFRT------------------HLGPISGIVTQQYCLSKIFTSCYDGL-IRLMDA-----  312 (536)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~~------------------h~~~V~~l~~~~~~~~~l~s~s~dg~-I~vwd~-----  312 (536)
                      ++.+.+|+...+    ........                  +.+....+.|+||| ++|+....|.+ +..|.+     
T Consensus       131 ~~~l~~~~~~~g----~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~~~~~~  205 (470)
T d2bgra1         131 NNDIYVKIEPNL----PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSD  205 (470)
T ss_dssp             TTEEEEESSTTS----CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCS
T ss_pred             cccceEEECCCC----ceeeeeeccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEEEEeecc
Confidence            679999998863    22221111                  22345668899999 88888776533 333332     


Q ss_pred             ------------------------------CCCeEEEe------------ecCCCceeEEEecCCCCCEEEEE-ECCC--
Q 009380          313 ------------------------------EKEVFDLV------------YSSEYAVFSLSQQPNNVNTLYFG-EGQG--  347 (536)
Q Consensus       313 ------------------------------~~~~~~~~------------~~~~~~i~~l~~~~~~~~~l~~g-~~dg--  347 (536)
                                                    ..+.....            ......+..+.|.+++ .+++.. ...+  
T Consensus       206 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~r~~~~  284 (470)
T d2bgra1         206 ESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNY  284 (470)
T ss_dssp             TTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTE
T ss_pred             CCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCC-ceeEEEeeccCCc
Confidence                                          11110000            0112234567777776 333332 2222  


Q ss_pred             ---eEEEEECCCCccceeE-----e--------ccCCCeEEEEEecCCC-CEEEEEeCCCcEEEEeCCCCCCCCCCccee
Q 009380          348 ---GLNIWDVRSRKSATEW-----L--------LHEARINTIDFNPRNP-NIMATSSTDGTACIWDLRSMATDKPEPMKV  410 (536)
Q Consensus       348 ---~i~i~d~~~~~~~~~~-----~--------~h~~~i~~i~~~p~~~-~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~  410 (536)
                         .+..+|..++......     .        .|...  ...|.+++. .+++.+..||..+||.+....   .....+
T Consensus       285 ~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g---~~~~~l  359 (470)
T d2bgra1         285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDK---KDCTFI  359 (470)
T ss_dssp             EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTC---SCCEES
T ss_pred             eEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccC---Cceeee
Confidence               2334455555432111     0        11112  223344333 345667778776666543321   133334


Q ss_pred             ecccCceeEEEEccCCCeE-EEEeCCC----c--EEEEeCCCCCcceEEeccC-CCCceeeeeEEEEcCCCCEEEE---E
Q 009380          411 LSHKRAVHSAYFSPSGSSL-ATTSFDD----T--IGIWSGVNFENTSMIHHNN-QTGRWISSFRAIWGWDDSCVFI---G  479 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l-~t~s~dg----~--I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~---g  479 (536)
                      ..+...|..+ ++++++.+ ++++.++    .  |.-.++........+.... ....  ....++|||||+|++.   |
T Consensus       360 t~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~--~~~s~~fSpdgky~~~~~s~  436 (470)
T d2bgra1         360 TKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERC--QYYSVSFSKEAKYYQLRCSG  436 (470)
T ss_dssp             CCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTB--CBEEEEECTTSSEEEEEECS
T ss_pred             ccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCC--CEEEEEECCCCCEEEEEecC
Confidence            3455667666 44444443 3443322    1  3333444444333332111 1111  1234789999999773   3


Q ss_pred             cCCCcEEEEcCCccccceeccC
Q 009380          480 NMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       480 s~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      ...-.+.+|+..+++.+..|+.
T Consensus       437 ~~~P~~~l~~~~~g~~v~~le~  458 (470)
T d2bgra1         437 PGLPLYTLHSSVNDKGLRVLED  458 (470)
T ss_dssp             BSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCeEEEEECCCCCEEEEEec
Confidence            3344689999999988888764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.38  E-value=1.1e-11  Score=125.13  Aligned_cols=136  Identities=8%  Similarity=-0.059  Sum_probs=98.6

Q ss_pred             eeecCCCCcccccccccccccccccccceEEecccccCccc------cccccCCceEEEEEEecCCccEEEEEeC-----
Q 009380          188 TCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPEN------IARIMPGRITQMKFLPCSDVRMVVAGSK-----  256 (536)
Q Consensus       188 ~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~------~~~~~~~~I~~v~~~p~~~~~~l~tg~~-----  256 (536)
                      .+.+.+++.++.            ..++.+.+|++......      .+..|...|.++.|||  ||++|+.++.     
T Consensus        21 ~~~W~~d~~~~~------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp--Dg~~i~~~~~~~~~~   86 (470)
T d2bgra1          21 SLRWISDHEYLY------------KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP--DGQFILLEYNYVKQW   86 (470)
T ss_dssp             CCEECSSSEEEE------------ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT--TSSEEEEEEEEEECS
T ss_pred             CCEeCCCCEEEE------------EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC--CCCEEEEEECCccee
Confidence            455667776443            23567889998655432      2244567899999999  9999998743     


Q ss_pred             ----CCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec----------
Q 009380          257 ----LGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS----------  322 (536)
Q Consensus       257 ----dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~----------  322 (536)
                          ++.+.|||+.+     ..+..+..|...+..+.|+||| +.|+.. .++.+.+|+..++....+..          
T Consensus        87 r~s~~~~~~l~d~~~-----~~~~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g  159 (470)
T d2bgra1          87 RHSYTASYDIYDLNK-----RQLITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNG  159 (470)
T ss_dssp             SSCEEEEEEEEETTT-----TEECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred             eeccCceEEEEECCC-----CcccccccCCccccccccccCc-ceeeEe-ecccceEEECCCCceeeeeeccCCCccccc
Confidence                57889999996     3456678889999999999999 888875 47789999998876544332          


Q ss_pred             ---------CCCceeEEEecCCCCCEEEEEEC
Q 009380          323 ---------SEYAVFSLSQQPNNVNTLYFGEG  345 (536)
Q Consensus       323 ---------~~~~i~~l~~~~~~~~~l~~g~~  345 (536)
                               ..+....+.|+|+| ..|++...
T Consensus       160 ~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~  190 (470)
T d2bgra1         160 ITDWVYEEEVFSAYSALWWSPNG-TFLAYAQF  190 (470)
T ss_dssp             BCCHHHHHHTSSSSBCEEECTTS-SEEEEEEE
T ss_pred             ccceeeeeeecCCccccEECCCC-CccceeEe
Confidence                     11234568899999 67766554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.38  E-value=8.9e-12  Score=121.99  Aligned_cols=259  Identities=11%  Similarity=0.058  Sum_probs=163.8

Q ss_pred             EEEEeCCCcEEEEECCCCCCCCCceEEe------------------------------ccCCCCEEEEEEecCCCCEEEE
Q 009380          251 VVAGSKLGNITFWNLDSQQDEDNGIYLF------------------------------RTHLGPISGIVTQQYCLSKIFT  300 (536)
Q Consensus       251 l~tg~~dg~v~iwd~~~~~~~~~~~~~~------------------------------~~h~~~V~~l~~~~~~~~~l~s  300 (536)
                      +++|+.+|+|.+|++.+    ...+..+                              ..|.-......+.||| ++|+.
T Consensus        14 f~Sgg~sG~V~V~dlpS----~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG-r~lfV   88 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPS----MRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG-KYLFI   88 (441)
T ss_dssp             EEECBTTCCEEEEEETT----TEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE-EEEEE
T ss_pred             EEeCCCCCcEEEEeCCC----CcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC-CEEEE
Confidence            56778899999999875    2222221                              1244445566678999 77755


Q ss_pred             E-ECCCeEEEEECCCCeEEEee--cCCCceeEEEecCCCCCEEEEEECCCe------------------EEEEECCCCcc
Q 009380          301 S-CYDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGG------------------LNIWDVRSRKS  359 (536)
Q Consensus       301 ~-s~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~------------------i~i~d~~~~~~  359 (536)
                      . ..++.|.++|+.+.+...+.  .....+..++|+|++....+++.....                  +..+|..+.+.
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             EcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence            5 57889999999998776644  456789999999998433333332223                  35588888777


Q ss_pred             ceeEeccCCCeEEEEEecCCCCEEEEEeCC-----------------------------------------CcEEEEeCC
Q 009380          360 ATEWLLHEARINTIDFNPRNPNIMATSSTD-----------------------------------------GTACIWDLR  398 (536)
Q Consensus       360 ~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d-----------------------------------------g~i~iwdl~  398 (536)
                      ..++.. ......+.|+|+|. ++++++.+                                         +.+.+++..
T Consensus       169 ~~qI~v-~~~p~~v~~spdGk-~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~  246 (441)
T d1qnia2         169 AWQVIV-DGNLDNTDADYTGK-YATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG  246 (441)
T ss_dssp             EEEEEE-SSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred             eEEEec-CCCccceEECCCCC-EEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence            766653 34578899999985 55544432                                         223333322


Q ss_pred             CCCCCCCCcceeecccCceeEEEEccCCCeEEE-EeCCCcEEEEeCCCCCc--------ceEEeccCCCCceeeeeEEEE
Q 009380          399 SMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT-TSFDDTIGIWSGVNFEN--------TSMIHHNNQTGRWISSFRAIW  469 (536)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t-~s~dg~I~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  469 (536)
                      .     ........-......+.++|||+++++ +..+++|.|||+.+...        ...+......+  +..+...|
T Consensus       247 ~-----~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~g--lgplh~~f  319 (441)
T d1qnia2         247 E-----SEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELG--LGPLHTTF  319 (441)
T ss_dssp             S-----CSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCC--SCEEEEEE
T ss_pred             C-----CceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccc--cCccccee
Confidence            2     122333333455688999999998765 56899999999864321        11121111111  23345679


Q ss_pred             cCCCCEEEEEcCCCcEEEEcCCcc----------ccceeccCC----ceeeeeeeEeecCCCCCEEEEEc
Q 009380          470 GWDDSCVFIGNMTRTVEVISPAQR----------RSVATLQSP----YISAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       470 s~~g~~l~~gs~dg~I~v~d~~~~----------~~~~~l~~~----~~~~~~~~~~~~p~~~~~lasgs  525 (536)
                      +++|..+.+...|..|..|++...          ..+..+.-|    |.... ...+++| +|.||++++
T Consensus       320 d~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~-~~~t~~p-dGk~l~s~~  387 (441)
T d1qnia2         320 DGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHAS-LTESRDA-DGKWLVVLS  387 (441)
T ss_dssp             CSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEET-TTTSTTC-CCCEEEEEE
T ss_pred             cCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccc-cccccCC-CCcEEEecC
Confidence            999988999999999999997421          123333222    22221 3456778 789999993

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.22  E-value=4.8e-09  Score=101.55  Aligned_cols=283  Identities=9%  Similarity=0.008  Sum_probs=158.6

Q ss_pred             EEEEEeC--CCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-CeEEEe--ecC
Q 009380          250 MVVAGSK--LGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-EVFDLV--YSS  323 (536)
Q Consensus       250 ~l~tg~~--dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-~~~~~~--~~~  323 (536)
                      .|+.|+.  .+.|.++.++........+.. ......++..|+|++++ ++|+++.. +.+..|.+.. +.....  ...
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~-~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~   81 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHER-KNIYGAAM-KKWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTS-SEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCC-CEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence            3666754  567887777653211112222 22345567789999998 88888764 5677887653 222222  223


Q ss_pred             CCceeEEEecCCCCCEEEEEE---CCCeEEEEECCCC-------------cc---ceeE-eccCCCeEEEEEecCCCCEE
Q 009380          324 EYAVFSLSQQPNNVNTLYFGE---GQGGLNIWDVRSR-------------KS---ATEW-LLHEARINTIDFNPRNPNIM  383 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~---~dg~i~i~d~~~~-------------~~---~~~~-~~h~~~i~~i~~~p~~~~~l  383 (536)
                      ......+++++++ +.+++..   ..+.|..+.+...             ..   .... ......+.++.|+|+|..++
T Consensus        82 ~~~p~~v~~~~~~-~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~  160 (365)
T d1jofa_          82 GGHPRANDADTNT-RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY  160 (365)
T ss_dssp             CSSGGGGCTTSCC-EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred             CCCcEEEEECCCC-CEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEE
Confidence            3456677888887 4333222   2345554443211             10   0000 11233578999999985444


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcc--eeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCcceEEeccC----
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPM--KVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFENTSMIHHNN----  456 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~--~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~~~~~~~~~~----  456 (536)
                      ++......|.+|+...... .....  ...........+.|+|+++++++.. .+++|.+|++.............    
T Consensus       161 v~d~g~d~v~~~~~~~~g~-~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~  239 (365)
T d1jofa_         161 SADLTANKLWTHRKLASGE-VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI  239 (365)
T ss_dssp             EEETTTTEEEEEEECTTSC-EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred             EeeCCCCEEEEEEccCCCc-eeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccc
Confidence            4444456788887654210 00011  1113456789999999999886665 67889999987655433221110    


Q ss_pred             ----------CCCceeeeeEEEEcCCCCEEEEEcC------CCcEEEEcCCccccceec----cCCceeeeeeeEeecCC
Q 009380          457 ----------QTGRWISSFRAIWGWDDSCVFIGNM------TRTVEVISPAQRRSVATL----QSPYISAIPCRFHAHPH  516 (536)
Q Consensus       457 ----------~~~~~~~~~~~~~s~~g~~l~~gs~------dg~I~v~d~~~~~~~~~l----~~~~~~~~~~~~~~~p~  516 (536)
                                ..........+.++|+|++|++++.      ...|..|++.....+...    ........+..++++|.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             cccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence                      0011112234678999999988743      123777776543222211    11111222345788886


Q ss_pred             CCCEEEEE-ccCCeEEEEecC
Q 009380          517 QVGTLAGA-TGGGQVYVWTSD  536 (536)
Q Consensus       517 ~~~~lasg-s~Dg~v~iW~~d  536 (536)
                      ++.+|+++ ..++.|.||+++
T Consensus       320 ~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         320 SDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             CTTEEEEECSSSCEEEEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEEe
Confidence            67876655 578999999763

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=1.6e-08  Score=93.03  Aligned_cols=236  Identities=12%  Similarity=0.052  Sum_probs=145.4

Q ss_pred             cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCC---eEEEEECCCCeEEEeecCCCceeEEEecCC
Q 009380          259 NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDG---LIRLMDAEKEVFDLVYSSEYAVFSLSQQPN  335 (536)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg---~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~  335 (536)
                      .|.|.|.+     +.....+..+...+..-+|+||| +.|+......   .+.+.+..++.......+........|+|+
T Consensus        20 ~l~i~d~d-----G~~~~~l~~~~~~~~sP~wSPDG-k~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYD-----GYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETT-----SCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTT
T ss_pred             EEEEEcCC-----CCCcEEEecCCCceeeeEECCCC-CEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCC
Confidence            57777776     34444445566778899999999 8887665443   477778888888778888888999999999


Q ss_pred             CCCEEEEEECCCeEEEEECCCCcc-ceeEeccCCCeEEEEEecCCCCEEEEEeCCCcE--EEEeCCCCCCCCCCcceeec
Q 009380          336 NVNTLYFGEGQGGLNIWDVRSRKS-ATEWLLHEARINTIDFNPRNPNIMATSSTDGTA--CIWDLRSMATDKPEPMKVLS  412 (536)
Q Consensus       336 ~~~~l~~g~~dg~i~i~d~~~~~~-~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i--~iwdl~~~~~~~~~~~~~~~  412 (536)
                      +..+++....++...++....... ...............+++++...+++...+|..  .+.++...     .......
T Consensus        94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~-----~~~~~~~  168 (269)
T d2hqsa1          94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG-----APQRITW  168 (269)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS-----CCEECCC
T ss_pred             CCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccc-----cceeeec
Confidence            954444444454444443332222 222223444445566777775566666666654  44455443     2233334


Q ss_pred             ccCceeEEEEccCCCeEEEEeCCC-c--EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC---CCcEE
Q 009380          413 HKRAVHSAYFSPSGSSLATTSFDD-T--IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM---TRTVE  486 (536)
Q Consensus       413 ~~~~v~~l~~sp~g~~l~t~s~dg-~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~---dg~I~  486 (536)
                      +........|+|+++.++..+.++ .  |.+++......  .+...  .+.   ...+.|||||+.|+..+.   ...|.
T Consensus       169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~~~---~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSS--TFL---DETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCC--SSS---CEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             ccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeec--Ccc---ccceEECCCCCEEEEEEcCCCCcEEE
Confidence            566778889999999888776544 3  44455443332  22111  111   123679999999875443   34689


Q ss_pred             EEcCCccccceeccCCceeeeeeeEeecC
Q 009380          487 VISPAQRRSVATLQSPYISAIPCRFHAHP  515 (536)
Q Consensus       487 v~d~~~~~~~~~l~~~~~~~~~~~~~~~p  515 (536)
                      ++++.++.. ..+.......  ...+|+|
T Consensus       242 ~~~~dg~~~-~~lt~~~g~~--~~p~WSP  267 (269)
T d2hqsa1         242 LVSTDGRFK-ARLPATDGQV--KFPAWSP  267 (269)
T ss_dssp             EEETTSCCE-EECCCSSSEE--EEEEECC
T ss_pred             EEECCCCCE-EEEeCCCCcE--EeEEeCC
Confidence            999988754 3444333222  3567887

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=3.2e-08  Score=90.83  Aligned_cols=219  Identities=11%  Similarity=0.079  Sum_probs=138.4

Q ss_pred             EEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCC---cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecC
Q 009380          217 VDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLG---NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQY  293 (536)
Q Consensus       217 v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg---~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~  293 (536)
                      |.|-|.+......+..+...+.+.+|||  ||+.||......   .+.+.+..     ......+..+.+......|+|+
T Consensus        21 l~i~d~dG~~~~~l~~~~~~~~sP~wSP--DGk~IAf~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~spd   93 (269)
T d2hqsa1          21 LRVSDYDGYNQFVVHRSPQPLMSPAWSP--DGSKLAYVTFESGRSALVIQTLA-----NGAVRQVASFPRHNGAPAFSPD   93 (269)
T ss_dssp             EEEEETTSCSCEEEEEESSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETT-----TCCEEEEECCSSCEEEEEECTT
T ss_pred             EEEEcCCCCCcEEEecCCCceeeeEECC--CCCEEEEEEeeccCcceeeeecc-----cCceeEEeeeecccccceecCC
Confidence            4454554444444455678899999999  999998765433   35555555     3445566677888999999999


Q ss_pred             CCCEEEEEE-CCCeEE--EEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCC--eEEEEECCCCccceeEeccCC
Q 009380          294 CLSKIFTSC-YDGLIR--LMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQG--GLNIWDVRSRKSATEWLLHEA  368 (536)
Q Consensus       294 ~~~~l~s~s-~dg~I~--vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg--~i~i~d~~~~~~~~~~~~h~~  368 (536)
                      + ..++... .++...  .+.....................+++++...+++...+|  .|.++++..+.. ..+..+..
T Consensus        94 g-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~  171 (269)
T d2hqsa1          94 G-SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGS  171 (269)
T ss_dssp             S-SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSS
T ss_pred             C-CeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccc
Confidence            9 6665544 343333  333334444444445555566677777745555555555  455556655433 33334566


Q ss_pred             CeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC---CcEEEEeCCC
Q 009380          369 RINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD---DTIGIWSGVN  445 (536)
Q Consensus       369 ~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d---g~I~iwd~~~  445 (536)
                      ......|+|++..++.+....+...+|......    .......+........|+|||+.|+..+..   ..|.++++..
T Consensus       172 ~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg  247 (269)
T d2hqsa1         172 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----GGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  247 (269)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCEEEEEEETTT----CCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cccccccccccceeEEEeecCCceeeeEeeccc----ccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            677889999986556666666666665544322    233444556677888999999988765543   4588999876


Q ss_pred             CCc
Q 009380          446 FEN  448 (536)
Q Consensus       446 ~~~  448 (536)
                      ...
T Consensus       248 ~~~  250 (269)
T d2hqsa1         248 RFK  250 (269)
T ss_dssp             CCE
T ss_pred             CCE
Confidence            543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.10  E-value=2.5e-08  Score=93.70  Aligned_cols=229  Identities=11%  Similarity=0.080  Sum_probs=154.8

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCC-
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEK-  314 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~-  314 (536)
                      .+..++++|  ||+++++...+++|..|+...      ....+......+.+++|.+++ +++++...++.+..|+... 
T Consensus        29 ~~e~iAv~p--dG~l~vt~~~~~~I~~i~p~g------~~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAP--DGTIFVTNHEVGEIVSITPDG------NQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECT--TSCEEEEETTTTEEEEECTTC------CEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECC--CCCEEEEeCCCCEEEEEeCCC------CEEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEeccc
Confidence            477899999  999999999999888887553      233445566789999999999 8888888888888888654 


Q ss_pred             -CeEEEee--cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe----------ccCCCeEEEEEecCCCC
Q 009380          315 -EVFDLVY--SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL----------LHEARINTIDFNPRNPN  381 (536)
Q Consensus       315 -~~~~~~~--~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~----------~h~~~i~~i~~~p~~~~  381 (536)
                       +....+.  ........+++.+++ +++++...++.+..+|...+.......          ........+.+..  ..
T Consensus       100 ~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~  176 (302)
T d2p4oa1         100 DGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NF  176 (302)
T ss_dssp             TSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TE
T ss_pred             ccceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--Cc
Confidence             2333222  345668899999998 677777778899999987764322111          1123456677764  35


Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          382 IMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       382 ~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      ++++.+..+.|..+++.....  ...............++|+++|+++++...++.|..|+... +.......... ...
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~~~~-~~~  252 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDK--PGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQAEQG-VIG  252 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSC--BCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECGGGT-CTT
T ss_pred             eeeecCCCCeEEecccccccc--ccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEecCCC-CCC
Confidence            777778889999888776431  11222223445567899999999888888899999998643 32222221111 111


Q ss_pred             eeeeEEEE---cCCCCEEEEEcCC
Q 009380          462 ISSFRAIW---GWDDSCVFIGNMT  482 (536)
Q Consensus       462 ~~~~~~~~---s~~g~~l~~gs~d  482 (536)
                      .+  .++|   ++|++.|++++..
T Consensus       253 pt--~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         253 ST--AVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EE--EEEECCSTTTTTEEEEEECT
T ss_pred             ce--EEEEcCCCCCCCEEEEECCC
Confidence            22  3678   6678888776544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.07  E-value=2.1e-08  Score=91.94  Aligned_cols=237  Identities=8%  Similarity=0.036  Sum_probs=148.0

Q ss_pred             eEEEEEEecCCccEEEEE-eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          237 ITQMKFLPCSDVRMVVAG-SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      -..|++.+  +|+++++. +..+.|..++....   ......+.+. .....+++.+++ .++++....+.+++++-.+.
T Consensus        16 P~~vavd~--dG~i~v~~~~~~~~i~~~~~~~~---~~~~~~~~~~-~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          16 PSGVAVDS--AGNVYVTSEGMYGRVVKLATGST---GTTVLPFNGL-YQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             EEEEEECT--TCCEEEEECSSSCEEEEEC-------CEEECCCCSC-CSCCCEEECTTC-CEEEEETTTEEEEECTTCSC
T ss_pred             CCEEEEcC--CCCEEEEEcCCCCEEEEEcCCCc---eEEEeccCCc-cCceEEEEcCCC-CEEEeeeeeceeeeeeeccc
Confidence            47899998  88876665 44567777776642   1112222222 235678999988 77777666666666665555


Q ss_pred             eEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 009380          316 VFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW  395 (536)
Q Consensus       316 ~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw  395 (536)
                      .............++++.+++ +++++-..+..+..++..................+|++.+++ +++++...++.|..+
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKL  166 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEE
T ss_pred             eeeeeeeeeeecccccccccc-eeEeeccccccccccccccceeeeeeecccCCcceeeecCCC-CEeeecccccccccc
Confidence            544444444677899999987 676666666678777765543222111223456789999977 678887888889999


Q ss_pred             eCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCE
Q 009380          396 DLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSC  475 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~  475 (536)
                      |.....    ........-.....++++++|+++++....+.|..++..... ...+.. ....   ....++++++|.+
T Consensus       167 d~~~~~----~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~-~~~~---~P~~i~~d~~g~l  237 (260)
T d1rwia_         167 EAESNN----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF-TGLN---TPLAVAVDSDRTV  237 (260)
T ss_dssp             CTTTCC----EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC-CSCC---CEEEEEECTTCCE
T ss_pred             ccccce----eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc-CCCC---CeEEEEEeCCCCE
Confidence            977531    111112344567899999999988887778889888765332 222211 1111   1223667888887


Q ss_pred             EEEEcCCCcEEEEcCC
Q 009380          476 VFIGNMTRTVEVISPA  491 (536)
Q Consensus       476 l~~gs~dg~I~v~d~~  491 (536)
                      +++-..++.|+.++..
T Consensus       238 ~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         238 YVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEEGGGTEEEEECCC
T ss_pred             EEEECCCCEEEEEeCC
Confidence            7776666767666543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=2.4e-07  Score=85.66  Aligned_cols=239  Identities=10%  Similarity=0.065  Sum_probs=159.4

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc------CCCCEEEEEEecCCCCEEEEE-ECCCeEE
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT------HLGPISGIVTQQYCLSKIFTS-CYDGLIR  308 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~------h~~~V~~l~~~~~~~~~l~s~-s~dg~I~  308 (536)
                      .-..|++.|  +++++++-..++.|++||.+     +..+..+..      ....-..+++..+....+++. +.++.|.
T Consensus        24 ~P~gvavd~--dg~i~VaD~~n~rI~v~d~~-----G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          24 EPSGVAVNA--QNDIIVADTNNHRIQIFDKE-----GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             CEEEEEECT--TCCEEEEEGGGTEEEEECTT-----SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CccEEEEcC--CCCEEEEECCCCEEEEEeCC-----CCEEEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence            357899999  89988888888899999976     444444422      112345666666653444443 3456777


Q ss_pred             EEECCCCeEEEee-cCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEE
Q 009380          309 LMDAEKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       309 vwd~~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      +++.......... ........+++.+++ +++++....+.+.+++. .++.+..+.  .+......+++.+++ +++++
T Consensus        97 ~~~~~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~  173 (279)
T d1q7fa_          97 IYNQYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFIS  173 (279)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS-EEEEE
T ss_pred             cccccccceeecCCCcccccceeccccCC-cEEEEeeccceeeEecc-CCceeecccccccccccceeeeccce-eEEee
Confidence            7776544333322 234567889999887 67777777788888885 455555553  455678889999877 68888


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCCeEEEEeC-CCcEEEEeCCCCCcceEEeccCCCCce
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLATTSF-DDTIGIWSGVNFENTSMIHHNNQTGRW  461 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~  461 (536)
                      ....+.|++||...      ..+...   +.......|+++++|+++++-+. ++.|.+|+. +++.+..+........ 
T Consensus       174 d~~~~~V~~~d~~G------~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~-  245 (279)
T d1q7fa_         174 DNRAHCVKVFNYEG------QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ-  245 (279)
T ss_dssp             EGGGTEEEEEETTC------CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC-
T ss_pred             eccccceeeeecCC------ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCC-
Confidence            88889999999754      222222   24446789999999997777554 446999984 5666666643322222 


Q ss_pred             eeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          462 ISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       462 ~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                        ...++..++|.++ +.+.++.|++|......+
T Consensus       246 --p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         246 --CFDVALMDDGSVV-LASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             --EEEEEEETTTEEE-EEETTTEEEEEECSCCCC
T ss_pred             --EeEEEEeCCCcEE-EEeCCCeEEEEEeeeecC
Confidence              2235678998654 456788999998876543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.01  E-value=2.5e-07  Score=87.12  Aligned_cols=240  Identities=12%  Similarity=0.075  Sum_probs=148.6

Q ss_pred             CCEEEEEEecCCCCEEEEEEC-------CCeEEEEECCCCeEEEeecC-----CCceeEEEecCCCCCEEEEEECCCeEE
Q 009380          283 GPISGIVTQQYCLSKIFTSCY-------DGLIRLMDAEKEVFDLVYSS-----EYAVFSLSQQPNNVNTLYFGEGQGGLN  350 (536)
Q Consensus       283 ~~V~~l~~~~~~~~~l~s~s~-------dg~I~vwd~~~~~~~~~~~~-----~~~i~~l~~~~~~~~~l~~g~~dg~i~  350 (536)
                      .....++|.++| +++++...       +|.|..||..++........     ......+.|.+++ +.++++...+.|.
T Consensus        18 ~g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~~i~   95 (314)
T d1pjxa_          18 PGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRLGLL   95 (314)
T ss_dssp             TTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSS-SEEEEEETTTEEE
T ss_pred             CCCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCC-CEEEEEECCCeEE
Confidence            345678999998 76665432       46799999988765544321     2346789999998 7888888777899


Q ss_pred             EEECCCCccceeEeccC----CCeEEEEEecCCCCEEEEEeC---------------CCcEEEEeCCCCCCCCCCcceee
Q 009380          351 IWDVRSRKSATEWLLHE----ARINTIDFNPRNPNIMATSST---------------DGTACIWDLRSMATDKPEPMKVL  411 (536)
Q Consensus       351 i~d~~~~~~~~~~~~h~----~~i~~i~~~p~~~~~l~s~s~---------------dg~i~iwdl~~~~~~~~~~~~~~  411 (536)
                      .+|..............    ...+.+.+.++| ++.++-..               .|.|..++...      ......
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg------~~~~~~  168 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG------QMIQVD  168 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS------CEEEEE
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceeccCCceEEEEeecC------ceeEee
Confidence            99976543221111111    135789999987 56655321               23344444322      222333


Q ss_pred             cccCceeEEEEccCCC-----eEEEEeCCCcEEEEeCCCCCcceE---EeccCCCCceeeeeEEEEcCCCCEEEEEcCCC
Q 009380          412 SHKRAVHSAYFSPSGS-----SLATTSFDDTIGIWSGVNFENTSM---IHHNNQTGRWISSFRAIWGWDDSCVFIGNMTR  483 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~-----~l~t~s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg  483 (536)
                      ..-...+.++|+|++.     ++++-+..+.|..||+.....+..   +........ -..--+++..+|+++++....+
T Consensus       169 ~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE-GGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS-CEEEEEEEBTTCCEEEEEETTT
T ss_pred             CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc-ccceeeEEecCCcEEEEEcCCC
Confidence            3334457899999764     444556778899998754322221   111111100 0111256788999887777788


Q ss_pred             cEEEEcCCccccceeccCCceeeeeeeEeecCCCCC-EEEEEccCCeEEEEec
Q 009380          484 TVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVG-TLAGATGGGQVYVWTS  535 (536)
Q Consensus       484 ~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~-~lasgs~Dg~v~iW~~  535 (536)
                      .|.+||..++..+..+..+...  +..++|.| +++ ++++.+.+|.|...++
T Consensus       248 ~I~~~dp~~g~~~~~i~~p~~~--~t~~afg~-d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCPFEK--PSNLHFKP-QTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEECTTCBSCSEEEECSSSC--EEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred             EEEEEeCCCCEEEEEEECCCCC--EEEEEEeC-CCCEEEEEECCCCcEEEEEC
Confidence            9999999988777766654332  34577888 444 6677788898887765

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.99  E-value=1.4e-08  Score=98.29  Aligned_cols=250  Identities=9%  Similarity=-0.004  Sum_probs=145.7

Q ss_pred             CCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEE-eccCCCCEEEEEEecCCCCEE--EEEEC-CCeEEE
Q 009380          234 PGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYL-FRTHLGPISGIVTQQYCLSKI--FTSCY-DGLIRL  309 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~-~~~h~~~V~~l~~~~~~~~~l--~s~s~-dg~I~v  309 (536)
                      ...+..|+|+|  ++++|.+... +.+..|.+...   ...... ..........+.+++++ +.+  +++.+ .+.|..
T Consensus        39 ~~~~s~la~s~--d~~~ly~~~~-~~~~~~~i~~~---~~~~~~~~~~~~~~p~~v~~~~~~-~~~~v~~a~~~~~~v~~  111 (365)
T d1jofa_          39 DEPISWMTFDH--ERKNIYGAAM-KKWSSFAVKSP---TEIVHEASHPIGGHPRANDADTNT-RAIFLLAAKQPPYAVYA  111 (365)
T ss_dssp             TCCCSEEEECT--TSSEEEEEEB-TEEEEEEEEET---TEEEEEEEEECCSSGGGGCTTSCC-EEEEEEECSSTTCCEEE
T ss_pred             CCCCCEEEEcC--CCCEEEEEeC-CcEEEEEEeCC---CCeEEEeeecCCCCcEEEEECCCC-CEEEEEEecCCCCEEEE
Confidence            44567899999  9998888764 57888887752   111111 11222334567777777 533  22222 355555


Q ss_pred             EECCCC-------------eEE-----EeecCCCceeEEEecCCCCCEEEEEEC-CCeEEEEECCCCccce---eEe--c
Q 009380          310 MDAEKE-------------VFD-----LVYSSEYAVFSLSQQPNNVNTLYFGEG-QGGLNIWDVRSRKSAT---EWL--L  365 (536)
Q Consensus       310 wd~~~~-------------~~~-----~~~~~~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d~~~~~~~~---~~~--~  365 (536)
                      +.+...             ...     ........+.++.|+|++ ++++++.. ...|.+|+......+.   ...  .
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG-~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~  190 (365)
T d1jofa_         112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPD  190 (365)
T ss_dssp             EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred             eEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCC-CEEEEeeCCCCEEEEEEccCCCceeeccceeecC
Confidence            443210             100     011123347899999999 66666653 4589998865433221   222  2


Q ss_pred             cCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcce---------------eecccCceeEEEEccCCCeEE
Q 009380          366 HEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMK---------------VLSHKRAVHSAYFSPSGSSLA  430 (536)
Q Consensus       366 h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~---------------~~~~~~~v~~l~~sp~g~~l~  430 (536)
                      .......+.|+|++..+.++...+++|.+|++...+........               ...+......+.++|+|++|+
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~ly  270 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF  270 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEE
Confidence            35678899999999666677777899999998764311000000               011223456789999999988


Q ss_pred             EEeC-C-----CcEEEEeCCCCCcceEE---eccCCCCceeeeeEEEEcC-CCCEEEEEc-CCCcEEEEcCCcc
Q 009380          431 TTSF-D-----DTIGIWSGVNFENTSMI---HHNNQTGRWISSFRAIWGW-DDSCVFIGN-MTRTVEVISPAQR  493 (536)
Q Consensus       431 t~s~-d-----g~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~s~-~g~~l~~gs-~dg~I~v~d~~~~  493 (536)
                      ++.. +     +.|..|++.....+...   ......+.+..  .+.++| +|++|++++ .++.|.+|++...
T Consensus       271 vsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~--~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN--AVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC--CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCcc--EEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            8743 2     23777877654333221   12122222222  255787 789877775 5588999987543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.98  E-value=1.1e-07  Score=89.19  Aligned_cols=233  Identities=10%  Similarity=-0.025  Sum_probs=148.4

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCcc-cee
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKS-ATE  362 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~-~~~  362 (536)
                      .+..+++.|+| +++++...+++|..|+... ...........+.+++|.+++ +++++...++.+..++...... ...
T Consensus        29 ~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          29 FLENLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CcCCEEECCCC-CEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecccccceee
Confidence            58899999999 8999999999999998664 445556677889999999998 7888888888898888765433 222


Q ss_pred             Ee--ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCC------CCcceeecccCceeEEEEccCCCeEEEEeC
Q 009380          363 WL--LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDK------PEPMKVLSHKRAVHSAYFSPSGSSLATTSF  434 (536)
Q Consensus       363 ~~--~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~------~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~  434 (536)
                      +.  ......+.+.+.+++ +++++.+.++.+..+|........      ...............+.++. +.++++.+.
T Consensus       106 ~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~  183 (302)
T d2p4oa1         106 LLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTE  183 (302)
T ss_dssp             EEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETT
T ss_pred             ccccCCccccceeEEccCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCC
Confidence            22  244668899999987 788888888888888887642000      00000011223455666653 345556667


Q ss_pred             CCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccc-cceeccCCceeeeeeeEee
Q 009380          435 DDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRR-SVATLQSPYISAIPCRFHA  513 (536)
Q Consensus       435 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~-~~~~l~~~~~~~~~~~~~~  513 (536)
                      .+.|..++................. ..  -.++++++|.++++...++.|..|+..... .+.........  +..++|
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~-~p--dgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~--pt~vaf  258 (302)
T d2p4oa1         184 KMLLLRIPVDSTDKPGEPEIFVEQT-NI--DDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIG--STAVAF  258 (302)
T ss_dssp             TTEEEEEEBCTTSCBCCCEEEEESC-CC--SSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTT--EEEEEE
T ss_pred             CCeEEeccccccccccccccccCCC-CC--cceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCC--ceEEEE
Confidence            8889888876543322211000000 01  126789999988888888999999876542 23333322222  234566


Q ss_pred             c--CCCCCEEEEEcc
Q 009380          514 H--PHQVGTLAGATG  526 (536)
Q Consensus       514 ~--p~~~~~lasgs~  526 (536)
                      .  ..|++.|..++.
T Consensus       259 g~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         259 GQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CCSTTTTTEEEEEEC
T ss_pred             cCCCCCCCEEEEECC
Confidence            3  225566665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.98  E-value=4.1e-07  Score=84.00  Aligned_cols=235  Identities=9%  Similarity=0.076  Sum_probs=153.4

Q ss_pred             CEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC-------CCceeEEEecCCCCCEEEEE-ECCCeEEEEECC
Q 009380          284 PISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS-------EYAVFSLSQQPNNVNTLYFG-EGQGGLNIWDVR  355 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~-------~~~i~~l~~~~~~~~~l~~g-~~dg~i~i~d~~  355 (536)
                      ....|++.+++ +++++-.....|++||.+. .+...+..       ......+++..+....+++. +.++.|..++. 
T Consensus        24 ~P~gvavd~dg-~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          24 EPSGVAVNAQN-DIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             CEEEEEECTTC-CEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CccEEEEcCCC-CEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            35789999988 7777777788999999764 33333321       12344566655543444443 34457777775 


Q ss_pred             CCccceeEe-ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEccCCCeEEE
Q 009380          356 SRKSATEWL-LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSPSGSSLAT  431 (536)
Q Consensus       356 ~~~~~~~~~-~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp~g~~l~t  431 (536)
                      .+.....+. ........+++.+++ .++++....+.+.+++...      ......   .+......+++.++++.+++
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG------NVLHKFGCSKHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS------CEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCC------ceeecccccccccccceeeeccceeEEee
Confidence            455555554 344567889999877 6777777777788887553      222222   35567888999999998888


Q ss_pred             EeCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC-CCcEEEEcCCccccceeccCCceeeeeee
Q 009380          432 TSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM-TRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       432 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~-dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      ....+.|.+||.. ++.+..+.......   ....++++++|+++++-.. ++.|.+|+. +++.+..+........+..
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~g~~~---~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~  248 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGEGITN---YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD  248 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSC---SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred             eccccceeeeecC-Cceeeeeccccccc---CCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeE
Confidence            8888999999964 55555553322222   2233678999987777554 456999985 4666666654332233456


Q ss_pred             EeecCCCCCEEEEEccCCeEEEEec
Q 009380          511 FHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       511 ~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      ++..| ++. |+.++.++.|++|..
T Consensus       249 vav~~-dG~-l~V~~~n~~v~~fr~  271 (279)
T d1q7fa_         249 VALMD-DGS-VVLASKDYRLYIYRY  271 (279)
T ss_dssp             EEEET-TTE-EEEEETTTEEEEEEC
T ss_pred             EEEeC-CCc-EEEEeCCCeEEEEEe
Confidence            67777 544 555667899999975

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=4.1e-07  Score=85.56  Aligned_cols=240  Identities=9%  Similarity=0.027  Sum_probs=149.7

Q ss_pred             eEEEEEEecCCccEEEEEeC-------CCcEEEEECCCCCCCCCceEEecc----CCCCEEEEEEecCCCCEEEEEECCC
Q 009380          237 ITQMKFLPCSDVRMVVAGSK-------LGNITFWNLDSQQDEDNGIYLFRT----HLGPISGIVTQQYCLSKIFTSCYDG  305 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~-------dg~v~iwd~~~~~~~~~~~~~~~~----h~~~V~~l~~~~~~~~~l~s~s~dg  305 (536)
                      .-.++|.|  +|+++++...       +|.|..||..+.    ........    ..+.-..+.|.+++ +.|+++...+
T Consensus        20 ~EGpa~d~--dG~ly~~~~~~~~~~~~~g~I~r~d~~~~----~~~~~~~~~~~~~~g~P~Gl~~~~dg-~~l~vad~~~   92 (314)
T d1pjxa_          20 AEGPVFDK--NGDFYIVAPEVEVNGKPAGEILRIDLKTG----KKTVICKPEVNGYGGIPAGCQCDRDA-NQLFVADMRL   92 (314)
T ss_dssp             CEEEEECT--TSCEEEEETTCEETTEECCEEEEECTTTC----CEEEEECCEETTEECCEEEEEECSSS-SEEEEEETTT
T ss_pred             CeEeEEeC--CCCEEEEECccccccccCCEEEEEECCCC----cEEEEECCccccCCCcceeEEEeCCC-CEEEEEECCC
Confidence            45678999  8988876433       466888887752    22222111    12235689999998 8888888888


Q ss_pred             eEEEEECCCCeEEEeecC-C----CceeEEEecCCCCCEEEEEEC---------------CCeEEEEECCCCccceeEec
Q 009380          306 LIRLMDAEKEVFDLVYSS-E----YAVFSLSQQPNNVNTLYFGEG---------------QGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~-~----~~i~~l~~~~~~~~~l~~g~~---------------dg~i~i~d~~~~~~~~~~~~  365 (536)
                      .|..++...+........ .    .....+++.+++ ++.++-..               .|.|..++.. ++.. .+..
T Consensus        93 ~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~-~~~~  169 (314)
T d1pjxa_          93 GLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDT  169 (314)
T ss_dssp             EEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEE
T ss_pred             eEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceeccCCceEEEEeec-Ccee-EeeC
Confidence            899999887654433222 1    135779999988 55554321               2345555432 3322 2223


Q ss_pred             cCCCeEEEEEecCCC----CEEEEEeCCCcEEEEeCCCCCCCC-CCccee-e-cccCceeEEEEccCCCeEEEEeCCCcE
Q 009380          366 HEARINTIDFNPRNP----NIMATSSTDGTACIWDLRSMATDK-PEPMKV-L-SHKRAVHSAYFSPSGSSLATTSFDDTI  438 (536)
Q Consensus       366 h~~~i~~i~~~p~~~----~~l~s~s~dg~i~iwdl~~~~~~~-~~~~~~-~-~~~~~v~~l~~sp~g~~l~t~s~dg~I  438 (536)
                      ....-+.|+|+|++.    .++++-+..+.|..||+....... ...... . .+......+++..+|+++++....+.|
T Consensus       170 ~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I  249 (314)
T d1pjxa_         170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEE
Confidence            344557899999763    255555677889999876421000 000001 1 122345689999999988887788999


Q ss_pred             EEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEE-EEEcCCCcEEEEcCC
Q 009380          439 GIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCV-FIGNMTRTVEVISPA  491 (536)
Q Consensus       439 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~gs~dg~I~v~d~~  491 (536)
                      .+||...+.....+....   ...+.  ++|.++++.| ++.+.++.|..+++.
T Consensus       250 ~~~dp~~g~~~~~i~~p~---~~~t~--~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         250 EVFGPDGGQPKMRIRCPF---EKPSN--LHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEECTTCBSCSEEEECSS---SCEEE--EEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEeCCCCEEEEEEECCC---CCEEE--EEEeCCCCEEEEEECCCCcEEEEECC
Confidence            999988777666554321   22333  7789998754 555667888887764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=4.6e-07  Score=82.76  Aligned_cols=235  Identities=8%  Similarity=0.028  Sum_probs=144.5

Q ss_pred             CEEEEEEecCCCCEEEEE-ECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccce
Q 009380          284 PISGIVTQQYCLSKIFTS-CYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSAT  361 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~s~-s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~  361 (536)
                      .-.+|++.++| +.+++. +..+.|..++..+...... .........+++.+++ +++++....+.+.+++-.+...+.
T Consensus        15 ~P~~vavd~dG-~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          15 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CEEEEEECTTC-CEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCEEEEcCCC-CEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeeccceeee
Confidence            35789999998 765554 4557777777665433332 2333456789999987 666665555566665544443332


Q ss_pred             eEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEE
Q 009380          362 EWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIW  441 (536)
Q Consensus       362 ~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iw  441 (536)
                      ... ......+|++.+++ +++++-..+..+..++.....    ..............++++++|+++++...++.|..+
T Consensus        93 ~~~-~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          93 PFD-GLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT----QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             CCC-SCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSS----CEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEE
T ss_pred             eee-eeeecccccccccc-eeEeeccccccccccccccce----eeeeeecccCCcceeeecCCCCEeeecccccccccc
Confidence            222 23567899999977 677766666677777765521    111111223455789999999988888888899999


Q ss_pred             eCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEE
Q 009380          442 SGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTL  521 (536)
Q Consensus       442 d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l  521 (536)
                      |....... .+.. ....   ....++++++|.++++...++.|..++..... ...+.. ..-..+..+++++ ++.++
T Consensus       167 d~~~~~~~-~~~~-~~~~---~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~-~~~~~~-~~~~~P~~i~~d~-~g~l~  238 (260)
T d1rwia_         167 EAESNNQV-VLPF-TDIT---APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT-STVLPF-TGLNTPLAVAVDS-DRTVY  238 (260)
T ss_dssp             CTTTCCEE-ECCC-SSCC---SEEEEEECTTCCEEEEETTTTEEEEECTTCSC-CEECCC-CSCCCEEEEEECT-TCCEE
T ss_pred             ccccceee-eeec-cccC---CCccceeeeeeeeeeeecCCCEEEEEeCCCCe-EEEEcc-CCCCCeEEEEEeC-CCCEE
Confidence            97643322 2211 1111   12336788999888888888889888876543 222221 1112345678887 46888


Q ss_pred             EEEccCCeEEEEe
Q 009380          522 AGATGGGQVYVWT  534 (536)
Q Consensus       522 asgs~Dg~v~iW~  534 (536)
                      ++-..+++|+..+
T Consensus       239 vad~~~~rI~~i~  251 (260)
T d1rwia_         239 VADRGNDRVVKLT  251 (260)
T ss_dssp             EEEGGGTEEEEEC
T ss_pred             EEECCCCEEEEEe
Confidence            8877778777654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.84  E-value=1.2e-06  Score=82.52  Aligned_cols=235  Identities=10%  Similarity=0.031  Sum_probs=149.6

Q ss_pred             eEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC----CCeEEEEEC
Q 009380          237 ITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY----DGLIRLMDA  312 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~----dg~I~vwd~  312 (536)
                      +..++|.+  +|+++++-...+.|..|+.+.    ......+.........+++.++| .++++...    .+.|...+.
T Consensus        42 lEG~~~D~--~G~Ly~~D~~~g~I~ri~p~g----~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          42 LEGLNFDR--QGQLFLLDVFEGNIFKINPET----KEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             EEEEEECT--TSCEEEEETTTCEEEEECTTT----CCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECT
T ss_pred             cEeCEECC--CCCEEEEECCCCEEEEEECCC----CeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcC
Confidence            46899998  899888888889998888875    34444445556678899999998 77666543    234555566


Q ss_pred             CCCeEEEeecC---CCceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEE
Q 009380          313 EKEVFDLVYSS---EYAVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIM  383 (536)
Q Consensus       313 ~~~~~~~~~~~---~~~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l  383 (536)
                      ...........   ...+..+.+.++| ++.++...      .+.+..++... +.+..+...-...+.|+|+|++..++
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEE
Confidence            66554444332   3457789999998 55444221      23455565443 33333333345568899999885566


Q ss_pred             EEEeCCCcEEEEeCCCCCCCCCCcce----eecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccC-CC
Q 009380          384 ATSSTDGTACIWDLRSMATDKPEPMK----VLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNN-QT  458 (536)
Q Consensus       384 ~s~s~dg~i~iwdl~~~~~~~~~~~~----~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~-~~  458 (536)
                      ++-+..+.|..||+............    ..........++++++|++.++....+.|.+||. +++.+..+.... ..
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGG
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCC
Confidence            66677889999998753210000000    1111234568999999998888888999999995 677776664321 11


Q ss_pred             CceeeeeEEEEcCCCCEEEEEcC
Q 009380          459 GRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       459 ~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                      +......+++|.+++..+++.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CcCceeeeEEEeCCCCEEEEEcC
Confidence            22233345778887776666543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.74  E-value=1.7e-05  Score=74.36  Aligned_cols=232  Identities=10%  Similarity=-0.019  Sum_probs=141.9

Q ss_pred             CCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEe-ecCCCceeEEEecCCCCCEEEEEEC----CCeEEEEECCC
Q 009380          282 LGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLV-YSSEYAVFSLSQQPNNVNTLYFGEG----QGGLNIWDVRS  356 (536)
Q Consensus       282 ~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~-~~~~~~i~~l~~~~~~~~~l~~g~~----dg~i~i~d~~~  356 (536)
                      ...+..++|.+++ +++++-...+.|..|+..++..... .........+++.+++ +++++...    .+.|...+...
T Consensus        39 ~~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          39 GLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTS
T ss_pred             CcCcEeCEECCCC-CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCC
Confidence            3445689999998 7777777889999999988755443 3455678899999998 66665433    23456666555


Q ss_pred             CccceeEec--cCCCeEEEEEecCCCCEEEEEeC------CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCe
Q 009380          357 RKSATEWLL--HEARINTIDFNPRNPNIMATSST------DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSS  428 (536)
Q Consensus       357 ~~~~~~~~~--h~~~i~~i~~~p~~~~~l~s~s~------dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~  428 (536)
                      .........  -....+.+.+.++| ++.++...      .+.+..++....     ........-...+.++|+|+++.
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G-~l~vtd~~~~~~~~~g~v~~~~~dg~-----~~~~~~~~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFR-----TVTPIIQNISVANGIALSTDEKV  190 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSC-----CEEEEEEEESSEEEEEECTTSSE
T ss_pred             ceeeeeccCCCcccCCcceeEEecc-ceeecccccccccCcceeEEEecccc-----eeEEEeeccceeeeeeeccccce
Confidence            544333321  23457889999988 55555432      123555554331     22223333345678999999986


Q ss_pred             EE-EEeCCCcEEEEeCCCCCcc-eEE----eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          429 LA-TTSFDDTIGIWSGVNFENT-SMI----HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       429 l~-t~s~dg~I~iwd~~~~~~~-~~~----~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      |+ +-+..+.|..||+...... ...    .........  .--++++.+|++.++....+.|.+|+. .++.+..+..+
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~--PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P  267 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG--PDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP  267 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE--EEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccc--eeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCC
Confidence            64 4456789999997643221 111    111111111  112567889998888888899999996 57777776543


Q ss_pred             ce----eeeeeeEeecCCCCCEEEEEc
Q 009380          503 YI----SAIPCRFHAHPHQVGTLAGAT  525 (536)
Q Consensus       503 ~~----~~~~~~~~~~p~~~~~lasgs  525 (536)
                      ..    ....+.+++.|.. ..+++.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~-~~~~~t~  293 (319)
T d2dg1a1         268 GRDEGHMLRSTHPQFIPGT-NQLIICS  293 (319)
T ss_dssp             TGGGTCSCBCCEEEECTTS-CEEEEEE
T ss_pred             CcCCCcCceeeeEEEeCCC-CEEEEEc
Confidence            21    1123456777744 4554443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.1e-06  Score=83.06  Aligned_cols=305  Identities=9%  Similarity=0.007  Sum_probs=168.5

Q ss_pred             ceeeeecCCCCcccccccccccccccccccceEEecccccCccccc---cccCCceEEEEEEecCCccEEEEEeCCCcEE
Q 009380          185 GFKTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIA---RIMPGRITQMKFLPCSDVRMVVAGSKLGNIT  261 (536)
Q Consensus       185 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~---~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~  261 (536)
                      .+....+|||++.+... ....++|+.+..+.+.++|+.......+   ....+.+....|||  ||+.||-.. ++.|.
T Consensus        62 ~~~~~~~SpD~~~vl~~-~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP--DG~~iafv~-~~nl~  137 (465)
T d1xfda1          62 RAIRYEISPDREYALFS-YNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP--KGQQLIFIF-ENNIY  137 (465)
T ss_dssp             TCSEEEECTTSSEEEEE-ESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS--STTCEEEEE-TTEEE
T ss_pred             ccceeEECCCCCeEEEE-EcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc--CCceEEEEe-cceEE
Confidence            44566799999987644 2345677777888999999865433222   12245677799999  999988876 57888


Q ss_pred             EEECCCCCCCCCceE-EeccCCCC-----------------EEEEEEecCCCCEEEEEECC-Ce----------------
Q 009380          262 FWNLDSQQDEDNGIY-LFRTHLGP-----------------ISGIVTQQYCLSKIFTSCYD-GL----------------  306 (536)
Q Consensus       262 iwd~~~~~~~~~~~~-~~~~h~~~-----------------V~~l~~~~~~~~~l~s~s~d-g~----------------  306 (536)
                      +.+...+    ..+. +..+..+.                 -.++.|+||| ++|+....| ..                
T Consensus       138 ~~~~~~~----~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~~~~~~~~~p~  212 (465)
T d1xfda1         138 YCAHVGK----QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPT  212 (465)
T ss_dssp             EESSSSS----CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             EEecCCC----ceEEEecccCcceeeccccchhhhhhhccccceEEECCCC-CeEEEEEecccccceeecccccccccce
Confidence            8887653    2222 11121111                 2477899999 888776532 22                


Q ss_pred             -----------------EEEEECCCCeEEEee-------cCCCceeEEEecCCCCCEEEEEEC-C---CeEEEEECCCCc
Q 009380          307 -----------------IRLMDAEKEVFDLVY-------SSEYAVFSLSQQPNNVNTLYFGEG-Q---GGLNIWDVRSRK  358 (536)
Q Consensus       307 -----------------I~vwd~~~~~~~~~~-------~~~~~i~~l~~~~~~~~~l~~g~~-d---g~i~i~d~~~~~  358 (536)
                                       +.++|+.++......       ....-+..+.|.+++ .+++.... +   ..|.++|..+++
T Consensus       213 ~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         213 VKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCc
Confidence                             344444433221111       112236778899887 45444332 2   368889999988


Q ss_pred             cceeEec-cCCCe----EEEEEecCCCCEEEE-Ee-CCC--cEEEEeCCCCC--CCCCCcceeecccCceeEE-EEccCC
Q 009380          359 SATEWLL-HEARI----NTIDFNPRNPNIMAT-SS-TDG--TACIWDLRSMA--TDKPEPMKVLSHKRAVHSA-YFSPSG  426 (536)
Q Consensus       359 ~~~~~~~-h~~~i----~~i~~~p~~~~~l~s-~s-~dg--~i~iwdl~~~~--~~~~~~~~~~~~~~~v~~l-~~sp~g  426 (536)
                      +...+.. ....|    ....|.|+|..++.. .+ .+|  .+...++....  ........+....-.|..+ .|++++
T Consensus       292 ~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~  371 (465)
T d1xfda1         292 CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKG  371 (465)
T ss_dssp             EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTT
T ss_pred             EEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCC
Confidence            7554442 22222    345788888654332 22 232  34444432111  0111222222334455554 688877


Q ss_pred             CeEE-EEeCCC--c--EEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCC---CcEEEEcCCcccccee
Q 009380          427 SSLA-TTSFDD--T--IGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMT---RTVEVISPAQRRSVAT  498 (536)
Q Consensus       427 ~~l~-t~s~dg--~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~d---g~I~v~d~~~~~~~~~  498 (536)
                      +.|+ ++..++  .  |.-.++........+......  ......+.|||++++++.....   -.+.+++..+++.+..
T Consensus       372 ~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~--~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~  449 (465)
T d1xfda1         372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE--NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD  449 (465)
T ss_dssp             TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS--SCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred             CEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC--CCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEE
Confidence            6654 444332  2  433344433222222111001  1122347899999998754433   4578888888887777


Q ss_pred             ccC
Q 009380          499 LQS  501 (536)
Q Consensus       499 l~~  501 (536)
                      |+.
T Consensus       450 Le~  452 (465)
T d1xfda1         450 LET  452 (465)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            753

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=6.2e-06  Score=81.71  Aligned_cols=223  Identities=12%  Similarity=0.095  Sum_probs=130.2

Q ss_pred             EEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEecc---CCCCEEEEEEecCCCCEEEEEE---------CCCeEE
Q 009380          241 KFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRT---HLGPISGIVTQQYCLSKIFTSC---------YDGLIR  308 (536)
Q Consensus       241 ~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~---h~~~V~~l~~~~~~~~~l~s~s---------~dg~I~  308 (536)
                      .|.+  ++.++.. ..+|.|.+|++.++    .....+..   ..-.+....|+||+ ++++...         ..+.+.
T Consensus        23 ~W~~--~~~~~~~-~~~g~i~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~SpD~-~~vl~~~~~~~~~r~s~~~~~~   94 (465)
T d1xfda1          23 KWIS--DTEFIYR-EQKGTVRLWNVETN----TSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYV   94 (465)
T ss_dssp             CBSS--SSCBCCC-CSSSCEEEBCGGGC----CCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEE
T ss_pred             EEeC--CCcEEEE-eCCCcEEEEECCCC----CEEEEEcCccccccccceeEECCCC-CeEEEEEcccceeEeeccccEE
Confidence            4666  6655543 45788999999873    22222222   22357788899999 7776653         457899


Q ss_pred             EEECCCCeEEEeec---CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe-ccCCC---------------
Q 009380          309 LMDAEKEVFDLVYS---SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL-LHEAR---------------  369 (536)
Q Consensus       309 vwd~~~~~~~~~~~---~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~h~~~---------------  369 (536)
                      ++|+.++....+..   ....+....|+|+| +.|+... ++.|.+.+..++..++... +....               
T Consensus        95 i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG-~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1          95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             EEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTS
T ss_pred             EEEccCCceeeccCccCCccccceeeeccCC-ceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhc
Confidence            99999987766543   23456678999999 5555544 5589999887766544332 11111               


Q ss_pred             --eEEEEEecCCCCEEEEEe-CCCcEE---------------------------------EEeCCCCCCCCCC--cceee
Q 009380          370 --INTIDFNPRNPNIMATSS-TDGTAC---------------------------------IWDLRSMATDKPE--PMKVL  411 (536)
Q Consensus       370 --i~~i~~~p~~~~~l~s~s-~dg~i~---------------------------------iwdl~~~~~~~~~--~~~~~  411 (536)
                        -..+-|+|||. .||... .+..|.                                 ++|+..+......  .....
T Consensus       173 ~~~~a~~WSPDgk-~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~  251 (465)
T d1xfda1         173 KTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (465)
T ss_dssp             SSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             cccceEEECCCCC-eEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCc
Confidence              24778999985 555543 233333                                 3333322100000  00000


Q ss_pred             cccCceeEEEEccCCCeEEEEeC-C---CcEEEEeCCCCCcceEEeccCCCCceee--eeEEEEcCCCCEE
Q 009380          412 SHKRAVHSAYFSPSGSSLATTSF-D---DTIGIWSGVNFENTSMIHHNNQTGRWIS--SFRAIWGWDDSCV  476 (536)
Q Consensus       412 ~~~~~v~~l~~sp~g~~l~t~s~-d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~g~~l  476 (536)
                      ....-+..+.|+|++++++.... +   ..|.++|..+++....+....  ..|+.  .....|+++|+.+
T Consensus       252 ~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~--~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTTSCSE
T ss_pred             cccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC--CceEeccCCceeEccCCCee
Confidence            11223677899999886655432 2   248889998887665543221  22322  1225689998854

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.44  E-value=0.00029  Score=64.78  Aligned_cols=224  Identities=11%  Similarity=0.008  Sum_probs=142.6

Q ss_pred             EEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEE
Q 009380          239 QMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFD  318 (536)
Q Consensus       239 ~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~  318 (536)
                      +..|++. ++.++.+--..+.|.-||..++     ....+. ....+.++++.+++ .+++ ++.+ .|.++|..+++..
T Consensus        22 gp~wd~~-~~~l~wvDi~~~~I~r~d~~~g-----~~~~~~-~~~~~~~i~~~~dg-~l~v-a~~~-gl~~~d~~tg~~~   91 (295)
T d2ghsa1          22 GPTFDPA-SGTAWWFNILERELHELHLASG-----RKTVHA-LPFMGSALAKISDS-KQLI-ASDD-GLFLRDTATGVLT   91 (295)
T ss_dssp             EEEEETT-TTEEEEEEGGGTEEEEEETTTT-----EEEEEE-CSSCEEEEEEEETT-EEEE-EETT-EEEEEETTTCCEE
T ss_pred             CCeEECC-CCEEEEEECCCCEEEEEECCCC-----eEEEEE-CCCCcEEEEEecCC-CEEE-EEeC-ccEEeecccceee
Confidence            4557763 4556666556788999998762     222222 34568899999886 5555 4555 5889999998876


Q ss_pred             EeecC-----CCceeEEEecCCCCCEEEEEEC----CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380          319 LVYSS-----EYAVFSLSQQPNNVNTLYFGEG----QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       319 ~~~~~-----~~~i~~l~~~~~~~~~l~~g~~----dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      .+...     ...+..+.+.++| ++.++...    .+.-.+|.+..++...... .-..-+.++|++++..++++-+..
T Consensus        92 ~l~~~~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          92 LHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             EEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTT
T ss_pred             EEeeeecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeeccc
Confidence            65432     2357889999998 55544332    2344566666665433333 334568899999886677777778


Q ss_pred             CcEEEEeCCCCCCC--CCCcc--eeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEeccCCCCceeeee
Q 009380          390 GTACIWDLRSMATD--KPEPM--KVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIHHNNQTGRWISSF  465 (536)
Q Consensus       390 g~i~iwdl~~~~~~--~~~~~--~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  465 (536)
                      +.|..|++......  .....  ...+.......++++.+|++.++.-..+.|..||. +++.+..+....   ...+. 
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~---~~~T~-  244 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG---KQTTC-  244 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC---SBEEE-
T ss_pred             ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCC---CceEE-
Confidence            89999987542211  11111  11134456788999999997777767888999995 577777665432   12333 


Q ss_pred             EEEEc-CCCCEEEEEc
Q 009380          466 RAIWG-WDDSCVFIGN  480 (536)
Q Consensus       466 ~~~~s-~~g~~l~~gs  480 (536)
                       ++|. ++.+.|++.+
T Consensus       245 -~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         245 -PAFIGPDASRLLVTS  259 (295)
T ss_dssp             -EEEESTTSCEEEEEE
T ss_pred             -EEEeCCCCCEEEEEE
Confidence             6674 6766665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.38  E-value=0.00038  Score=63.90  Aligned_cols=224  Identities=10%  Similarity=0.041  Sum_probs=135.8

Q ss_pred             EEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEec
Q 009380          286 SGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       286 ~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  365 (536)
                      -+..|.+....++++=-..+.|..||..++... .+.....+.++++.+++  .|++++.+ .|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~i~~~~dg--~l~va~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS--KQLIASDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT--EEEEEETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEEEEEecCC--CEEEEEeC-ccEEeecccceeeEEeee
Confidence            355688765244444446789999999988764 34456678899998886  44555665 699999998875332221


Q ss_pred             ----cCCCeEEEEEecCCCCEEEEEeC----CCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEE-EeCCC
Q 009380          366 ----HEARINTIDFNPRNPNIMATSST----DGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLAT-TSFDD  436 (536)
Q Consensus       366 ----h~~~i~~i~~~p~~~~~l~s~s~----dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t-~s~dg  436 (536)
                          ....++.+.+.|+| ++.++...    .+.-.+|.+..+     ........-...+.++|+++++.++. -+..+
T Consensus        97 ~~~~~~~~~nd~~vd~~G-~iw~~~~~~~~~~~~g~l~~~~~g-----~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKG-----KVTKLFADISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             STTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETT-----EEEEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             ecCCCcccceeeEECCCC-CEEEEeccccccccceeEeeecCC-----cEEEEeeccCCcceeeecCCCceEEEeecccc
Confidence                12357889999988 44444322    234456665543     22333333445678999999986554 45677


Q ss_pred             cEEEEeCCCCC-----cceEE-eccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeee
Q 009380          437 TIGIWSGVNFE-----NTSMI-HHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCR  510 (536)
Q Consensus       437 ~I~iwd~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~  510 (536)
                      .|..|++....     ....+ ......+ ..  -.++.+.+|++.++.-..+.|..||. .++.+..+.-+....  ++
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g-~p--dG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~--T~  244 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKG-GM--DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQT--TC  244 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSS-EE--EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBE--EE
T ss_pred             eeeEeeecccccccccceEEEeccCcccc-cc--cceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCce--EE
Confidence            89988874221     11112 1111222 12  22557889988777666788999995 566777776543333  34


Q ss_pred             EeecCCCCC-EEEEEc
Q 009380          511 FHAHPHQVG-TLAGAT  525 (536)
Q Consensus       511 ~~~~p~~~~-~lasgs  525 (536)
                      ++|-..+.+ +++|..
T Consensus       245 ~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         245 PAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEESTTSCEEEEEEB
T ss_pred             EEEeCCCCCEEEEEEC
Confidence            566432334 444433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=7.8e-05  Score=67.56  Aligned_cols=227  Identities=11%  Similarity=0.029  Sum_probs=123.4

Q ss_pred             EEEecCC--ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC-C-----CeEEEEEC
Q 009380          241 KFLPCSD--VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY-D-----GLIRLMDA  312 (536)
Q Consensus       241 ~~~p~~~--~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-d-----g~I~vwd~  312 (536)
                      ..+|  +  |+.|+..+ +|.|.+.|+..     .....+..+.+.+....|+||| +.|+.... +     ..|.+++.
T Consensus         5 ~~sP--di~G~~v~f~~-~~dl~~~d~~~-----g~~~~Lt~~~~~~~~p~~SPDG-~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNP--DIHGDRIIFVC-CDDLWEHDLKS-----GSTRKIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEE--EEETTEEEEEE-TTEEEEEETTT-----CCEEEEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCC--CCCCCEEEEEe-CCcEEEEECCC-----CCEEEEecCCCcccCEEECCCC-CEEEEEEeeCCCCCceEEEEEEe
Confidence            3578  7  88887664 56788889985     3345566677788999999999 77765532 2     24778888


Q ss_pred             CCCeEEEeecCC-------CceeEEEecCCCCCEEEEEECC------CeEEEEECCCCccceeEeccCCCeEEEEEecCC
Q 009380          313 EKEVFDLVYSSE-------YAVFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSATEWLLHEARINTIDFNPRN  379 (536)
Q Consensus       313 ~~~~~~~~~~~~-------~~i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~  379 (536)
                      .++....+....       .......|+|++ +.|+.....      ..+...+...+....   .+......+ +.+++
T Consensus        76 ~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~  150 (281)
T d1k32a2          76 ENGEIKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINFVP---LNLGPATHI-LFADG  150 (281)
T ss_dssp             TTTEEEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEEEE---CCSCSCSEE-EEETT
T ss_pred             cCCceEEeeecCCCccCccccccccccCCCC-CEEEEEEccCCCccceeeeeecCCCceeEE---ecCCcccee-eecCC
Confidence            888776654322       245678899998 666654332      234455554433211   122222233 33434


Q ss_pred             CCEEEEEeCCCc-----------EEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCC--CcEEEEeCCCC
Q 009380          380 PNIMATSSTDGT-----------ACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFD--DTIGIWSGVNF  446 (536)
Q Consensus       380 ~~~l~s~s~dg~-----------i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~d--g~I~iwd~~~~  446 (536)
                      ..+++....+..           ..++....     ........+........++++. .+.....+  ..|.++|+.+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~  224 (281)
T d1k32a2         151 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-----GAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGK  224 (281)
T ss_dssp             EEEEEESCSCCTTSTTCCSTTCCEEEEEEET-----TEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSC
T ss_pred             CeEEEeeccccceeeeeccCCcceeeeeccc-----cceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCC
Confidence            334443322211           11111110     0111122233344445555543 23333333  34777887665


Q ss_pred             CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          447 ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                      .........   ....    ..|+|||+.|+.. .++.|+++|+.+++.
T Consensus       225 ~~~~lt~~~---~~~~----~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         225 DLRKHTSFT---DYYP----RHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             SCEECCCCC---SSCE----EEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             ceEEeecCC---Cccc----ccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            443221111   1111    3589999987764 367899999988854

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=0.0024  Score=57.32  Aligned_cols=214  Identities=7%  Similarity=-0.012  Sum_probs=126.0

Q ss_pred             CCceEEEEEEecCCccEEEEE-eCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEEC
Q 009380          234 PGRITQMKFLPCSDVRMVVAG-SKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDA  312 (536)
Q Consensus       234 ~~~I~~v~~~p~~~~~~l~tg-~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~  312 (536)
                      ...+..++|++  ..+.|.-. ...+.|.-.+++...........+......+.+|++.+.+.++.++-...+.|.+.++
T Consensus        29 ~~~~~~id~d~--~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          29 LRNVVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSSEEEEEEET--TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEEEe--CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            44677899998  55555544 4556677666653211111222233333557788998777344455556788999999


Q ss_pred             CCCeEEEee-cCCCceeEEEecCCCCCEEEEEEC--CCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC
Q 009380          313 EKEVFDLVY-SSEYAVFSLSQQPNNVNTLYFGEG--QGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       313 ~~~~~~~~~-~~~~~i~~l~~~~~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      ......... ........++++|.. .+++....  .+.|...++............-...+++++.+.+..+..+-...
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~-g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEccc-CeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCc
Confidence            876554433 344678899999876 45555443  34677777754333222233345678999998775566665667


Q ss_pred             CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          390 GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       390 g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      +.|...|+....  ...+...........++++. .+.++.+-..++.|...+..++.....+.
T Consensus       186 ~~I~~~~~dG~~--~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         186 HSISSIDVNGGN--RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             TEEEEEETTSCS--CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             CEEEEEECCCCC--EEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            889999986532  11111111222345567776 34444444467788888877776665554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.15  E-value=3.5e-05  Score=70.00  Aligned_cols=227  Identities=11%  Similarity=-0.032  Sum_probs=118.4

Q ss_pred             cCCC--CcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeC-CC-----cEEE
Q 009380          191 DEGL--GVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSK-LG-----NITF  262 (536)
Q Consensus       191 ~s~~--~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~-dg-----~v~i  262 (536)
                      .+||  |+.++..           .+|.|.+.++.......+..+.+.+...+|||  ||+.||.... ++     .|.+
T Consensus         6 ~sPdi~G~~v~f~-----------~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SP--DG~~iaf~~~~~~~~~~~~i~~   72 (281)
T d1k32a2           6 LNPDIHGDRIIFV-----------CCDDLWEHDLKSGSTRKIVSNLGVINNARFFP--DGRKIAIRVMRGSSLNTADLYF   72 (281)
T ss_dssp             EEEEEETTEEEEE-----------ETTEEEEEETTTCCEEEEECSSSEEEEEEECT--TSSEEEEEEEESTTCCEEEEEE
T ss_pred             cCCCCCCCEEEEE-----------eCCcEEEEECCCCCEEEEecCCCcccCEEECC--CCCEEEEEEeeCCCCCceEEEE
Confidence            4677  7777643           22456666665544444455678899999999  9998886532 22     3666


Q ss_pred             EECCCCCCCCCceEEec-------cCCCCEEEEEEecCCCCEEEEEECC------CeEEEEECCCCeEEEeecCCCceeE
Q 009380          263 WNLDSQQDEDNGIYLFR-------THLGPISGIVTQQYCLSKIFTSCYD------GLIRLMDAEKEVFDLVYSSEYAVFS  329 (536)
Q Consensus       263 wd~~~~~~~~~~~~~~~-------~h~~~V~~l~~~~~~~~~l~s~s~d------g~I~vwd~~~~~~~~~~~~~~~i~~  329 (536)
                      ++...+     ....+.       ..........|+|++ +.|+.....      ..+...+...+.......  .....
T Consensus        73 ~~~~~g-----~~~~lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  144 (281)
T d1k32a2          73 YNGENG-----EIKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSMTCLYRVENDGINFVPLNL--GPATH  144 (281)
T ss_dssp             EETTTT-----EEEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS--CSCSE
T ss_pred             EEecCC-----ceEEeeecCCCccCccccccccccCCCC-CEEEEEEccCCCccceeeeeecCCCceeEEecC--Cccce
Confidence            666642     222221       122345678899999 777765332      234555665555433222  22222


Q ss_pred             EEecCCCCCEEEEEECCC-----------eEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC--CcEEEEe
Q 009380          330 LSQQPNNVNTLYFGEGQG-----------GLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD--GTACIWD  396 (536)
Q Consensus       330 l~~~~~~~~~l~~g~~dg-----------~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d--g~i~iwd  396 (536)
                      . +.+++...++......           ........... ......+........+.++  .++.....+  ..|.++|
T Consensus       145 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d  220 (281)
T d1k32a2         145 I-LFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTD  220 (281)
T ss_dssp             E-EEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEE
T ss_pred             e-eecCCCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCccccceeeeecc--ccceecccccccceEEEe
Confidence            3 3333323333322211           11111111111 1122223344445556653  234444333  3577778


Q ss_pred             CCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcc
Q 009380          397 LRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENT  449 (536)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~  449 (536)
                      +....     ...+..+ .......|+|||+.|+.. .++.|+++|+.+++..
T Consensus       221 ~~g~~-----~~~lt~~-~~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         221 LDGKD-----LRKHTSF-TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             TTSCS-----CEECCCC-CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE
T ss_pred             CCCCc-----eEEeecC-CCcccccCcCCCCEEEEE-eCCEEEEEECCCCCEE
Confidence            87642     1122212 222335689999988764 4688999999877644

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=0.0022  Score=57.50  Aligned_cols=238  Identities=8%  Similarity=-0.015  Sum_probs=139.1

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCC-CCceEEeccCCCCEEEEEEecCCCCEEEEE-ECCCeEEEEECCCCeEEEeecC-CC
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDE-DNGIYLFRTHLGPISGIVTQQYCLSKIFTS-CYDGLIRLMDAEKEVFDLVYSS-EY  325 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~-~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~-s~dg~I~vwd~~~~~~~~~~~~-~~  325 (536)
                      .+|+.+.. +.|+-.+++..... ......+..+...+.+|+|.+.. +.|+-+ ..++.|+..++.......+... -.
T Consensus         2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~-~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~   79 (263)
T d1npea_           2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVD-KVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (263)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTT-TEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCC-CEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence            34444443 46777777642211 11222333444568889999887 666555 4568899999987655544432 35


Q ss_pred             ceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEE--eCCCCCCC
Q 009380          326 AVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIW--DLRSMATD  403 (536)
Q Consensus       326 ~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iw--dl~~~~~~  403 (536)
                      .+.++++...+.++.++-...+.|.+.++........+......+..+++.|.++.++.+-...+..+||  ++...   
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---  156 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---  156 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---
Confidence            6888888776633444445667999999875544333333346789999999776555554333333444  55432   


Q ss_pred             CCCcceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcC
Q 009380          404 KPEPMKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNM  481 (536)
Q Consensus       404 ~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~  481 (536)
                        ....+. ..-.....+++++.++.|+.+ ...+.|...|+........+. .  ...+.   .++.. ++.++++-..
T Consensus       157 --~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~--~~~P~---~lav~-~~~lYwtd~~  227 (263)
T d1npea_         157 --NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-G--LQYPF---AVTSY-GKNLYYTDWK  227 (263)
T ss_dssp             --CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-C--CCSEE---EEEEE-TTEEEEEETT
T ss_pred             --CceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-C--CCCcE---EEEEE-CCEEEEEECC
Confidence              112222 233466899999877766555 467789999986544333332 1  11122   13232 3333444445


Q ss_pred             CCcEEEEcCCccccceecc
Q 009380          482 TRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       482 dg~I~v~d~~~~~~~~~l~  500 (536)
                      .+.|...|..+++.+..+.
T Consensus       228 ~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         228 TNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEECCCCccceEEC
Confidence            6788888988887665553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.97  E-value=0.00021  Score=67.40  Aligned_cols=229  Identities=10%  Similarity=0.093  Sum_probs=139.1

Q ss_pred             CccEEEEEe-CCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCC-CCEEEEEECC------------------C
Q 009380          247 DVRMVVAGS-KLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYC-LSKIFTSCYD------------------G  305 (536)
Q Consensus       247 ~~~~l~tg~-~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~-~~~l~s~s~d------------------g  305 (536)
                      ||++|++.. .++.|.+-|+.+    .+...... .....+..+...++. ..+++..+.+                  +
T Consensus        98 DGrylFVNDkan~RVAvIdl~~----fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDV----MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTT----TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcc----eeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            788888876 467899999987    44433222 344566776665432 1567666653                  3


Q ss_pred             eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECC--------------------------------------C
Q 009380          306 LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQ--------------------------------------G  347 (536)
Q Consensus       306 ~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~d--------------------------------------g  347 (536)
                      .+.++|..+.+.............++++++| .++++.+.+                                      +
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dG-K~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCC-CEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            3677899888776665556677889999999 677776643                                      1


Q ss_pred             eEEEEECCCC--ccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCC-----CC--CCcceeecccCcee
Q 009380          348 GLNIWDVRSR--KSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMAT-----DK--PEPMKVLSHKRAVH  418 (536)
Q Consensus       348 ~i~i~d~~~~--~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~-----~~--~~~~~~~~~~~~v~  418 (536)
                      .+.+.|.+..  ..+..+-.-......+.++|||.++++++-.+.++.|+|+++...     ..  ..+.........-.
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL  332 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  332 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE
T ss_pred             CceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc
Confidence            2344444421  111111112234567899999987778888899999999975321     00  01111123455667


Q ss_pred             EEEEccCCCeEEEEeCCCcEEEEeCCCC----------CcceEEeccCCCCceeeeeEEEEcCCCCEEEEEc
Q 009380          419 SAYFSPSGSSLATTSFDDTIGIWSGVNF----------ENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGN  480 (536)
Q Consensus       419 ~l~~sp~g~~l~t~s~dg~I~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs  480 (536)
                      +-+|+..|+...+---|..|.-|++...          ..+..+...-+.++......-...|+|++|++.+
T Consensus       333 ht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            7899998865656668999999997421          2222332222333222221112367999999885

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=0.0056  Score=54.79  Aligned_cols=235  Identities=12%  Similarity=0.054  Sum_probs=138.5

Q ss_pred             EEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEE-CCCeEEEEECCCC----eEEEee-cC
Q 009380          250 MVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSC-YDGLIRLMDAEKE----VFDLVY-SS  323 (536)
Q Consensus       250 ~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s-~dg~I~vwd~~~~----~~~~~~-~~  323 (536)
                      +|+.+.. ..|+-.+++..     ....+......+.+++|.+.. +.|+-.. ..+.|...++...    ....+. ..
T Consensus         3 fLl~s~~-~~I~~~~l~~~-----~~~~~~~~~~~~~~id~d~~~-~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~   75 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRS-----EYTSLIPNLRNVVALDTEVAS-NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD   75 (266)
T ss_dssp             EEEEECB-SSEEEEETTSC-----CCEEEECSCSSEEEEEEETTT-TEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred             EEEEECC-CeEEEEECCCC-----cceeeeCCCCceEEEEEEeCC-CEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC
Confidence            4444443 36888898752     223333455678899999887 6666554 5677777776542    112222 23


Q ss_pred             CCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 009380          324 EYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSS-TDGTACIWDLRSMAT  402 (536)
Q Consensus       324 ~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s-~dg~i~iwdl~~~~~  402 (536)
                      ...+..+++.+.+.++.++-...+.|.+.++........+.........++++|..+.++.+.. ..+.|.-.++...  
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs--  153 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--  153 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC--
Confidence            3556778887766445454456678999998766554445555677899999997655555542 3345666666542  


Q ss_pred             CCCCcceee-cccCceeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE-
Q 009380          403 DKPEPMKVL-SHKRAVHSAYFSPSGSSLATT-SFDDTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG-  479 (536)
Q Consensus       403 ~~~~~~~~~-~~~~~v~~l~~sp~g~~l~t~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-  479 (536)
                         ....+. ..-...+.+++++.+..|+.+ ...+.|...++........+...........   ++..  +.+|+.. 
T Consensus       154 ---~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~---lav~--~~~ly~td  225 (266)
T d1ijqa1         154 ---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS---LAVF--EDKVFWTD  225 (266)
T ss_dssp             ---CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEE---EEEE--TTEEEEEE
T ss_pred             ---ceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEE---EEEE--CCEEEEEE
Confidence               222232 233567899999977666555 5678899999865443333322222222222   2233  3344444 


Q ss_pred             cCCCcEEEEcCCccccceeccC
Q 009380          480 NMTRTVEVISPAQRRSVATLQS  501 (536)
Q Consensus       480 s~dg~I~v~d~~~~~~~~~l~~  501 (536)
                      ..++.|...+..++.....+..
T Consensus       226 ~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         226 IINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             TTTTEEEEEETTTCCCCEEEEC
T ss_pred             CCCCeEEEEECCCCcceEEEEc
Confidence            4567888888777766555543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=0.0049  Score=55.05  Aligned_cols=208  Identities=13%  Similarity=0.049  Sum_probs=129.0

Q ss_pred             ccCCceEEEEEEecCCccEEEE-EeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEE-EEECCCeEEE
Q 009380          232 IMPGRITQMKFLPCSDVRMVVA-GSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIF-TSCYDGLIRL  309 (536)
Q Consensus       232 ~~~~~I~~v~~~p~~~~~~l~t-g~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~-s~s~dg~I~v  309 (536)
                      .+...|..|+|.+  ..+.|.- -..++.|+..+++.    ......+......+.+|++..-+ ..|+ +-...+.|.+
T Consensus        33 ~~~~~~~~ld~D~--~~~~iywsd~~~~~I~~~~l~g----~~~~~v~~~~~~~p~~iAvD~~~-~~lY~~d~~~~~I~~  105 (263)
T d1npea_          33 IPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHG----GEPTTIIRQDLGSPEGIALDHLG-RTIFWTDSQLDRIEV  105 (263)
T ss_dssp             EEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSS----CCCEEEECTTCCCEEEEEEETTT-TEEEEEETTTTEEEE
T ss_pred             cCCCcEEEEEEEe--CCCEEEEEECCCCeEEEEEccc----CCcEEEEEeccccccEEEEeccC-CeEEEeccCCCEEEE
Confidence            3345578899998  5455544 45567788888875    22333333334568899998766 5555 4455789999


Q ss_pred             EECCCCeEEEeecC-CCceeEEEecCCCCCEEEEEECC---CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEE
Q 009380          310 MDAEKEVFDLVYSS-EYAVFSLSQQPNNVNTLYFGEGQ---GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMAT  385 (536)
Q Consensus       310 wd~~~~~~~~~~~~-~~~i~~l~~~~~~~~~l~~g~~d---g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s  385 (536)
                      .++.......+... -..+..+++.|.. .+++.....   +.|...++............-....+|++.+.+..+..+
T Consensus       106 ~~~dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         106 AKMDGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTT-TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEE
T ss_pred             EecCCceEEEEecccccCCcEEEEeccc-CcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEE
Confidence            99987655444433 3678899999987 455554432   235555665433332222333566899999877555555


Q ss_pred             EeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEEEEeCCCCCcceEEe
Q 009380          386 SSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIGIWSGVNFENTSMIH  453 (536)
Q Consensus       386 ~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~iwd~~~~~~~~~~~  453 (536)
                      -...+.|...|+....     ...+........++++. .+.++.+-...+.|...|..+++....+.
T Consensus       185 d~~~~~I~~~~~~g~~-----~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         185 DAGTHRAECLNPAQPG-----RRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             ETTTTEEEEEETTEEE-----EEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCEEEEEECCCCC-----eEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            5567889999987632     11222212234577775 34444454467889999988777666553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.78  E-value=0.0066  Score=57.25  Aligned_cols=150  Identities=9%  Similarity=0.002  Sum_probs=87.4

Q ss_pred             CccEEEEEeCCC-----------cEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECC-CeEEEEECCC
Q 009380          247 DVRMVVAGSKLG-----------NITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYD-GLIRLMDAEK  314 (536)
Q Consensus       247 ~~~~l~tg~~dg-----------~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-g~I~vwd~~~  314 (536)
                      ++++++.|+.+.           .+.+||..+.... ........|.......++.+++ .+++.|+.+ ..+.+||..+
T Consensus        30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-DRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-CCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEEEEEGGG
T ss_pred             CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe-ecCCCCCCcccceeEEEEecCC-cEEEeecCCCcceeEecCcc
Confidence            788888887531           2678999875421 1122223344444566788888 888887655 5899999998


Q ss_pred             CeEEEeecC--CCceeEEEecCCCCCEEEEEECC------CeEEEEECCCCcccee--E-------eccC-----CCeEE
Q 009380          315 EVFDLVYSS--EYAVFSLSQQPNNVNTLYFGEGQ------GGLNIWDVRSRKSATE--W-------LLHE-----ARINT  372 (536)
Q Consensus       315 ~~~~~~~~~--~~~i~~l~~~~~~~~~l~~g~~d------g~i~i~d~~~~~~~~~--~-------~~h~-----~~i~~  372 (536)
                      ......-..  ...-.+.+..+++ .+++.|+.+      ..+.+||..+.+-...  .       ..+.     ..-..
T Consensus       108 ~~w~~~~~~~~~r~~~~~~~~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (387)
T d1k3ia3         108 DSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW  186 (387)
T ss_dssp             TEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCC
T ss_pred             CcccccccccccccccceeeecCC-ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeE
Confidence            876544321  1223356666777 677777643      3689999887642110  0       0000     00111


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          373 IDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       373 i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                      +...+++ .+++.+..++.+.++|..+.
T Consensus       187 ~~~~~~G-~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         187 LFGWKKG-SVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EEECGGG-CEEECCSSSEEEEEECSTTC
T ss_pred             EEEeCCC-CEEEecCcCCcEEecCcccC
Confidence            2222334 56677766777777776653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.74  E-value=0.0053  Score=57.66  Aligned_cols=199  Identities=10%  Similarity=0.076  Sum_probs=123.5

Q ss_pred             EEEEec---CCCCEEEEEE-CCCeEEEEECCCCeEEEee--cCCCceeEEEecCCCC-CEEEEEECC-------------
Q 009380          287 GIVTQQ---YCLSKIFTSC-YDGLIRLMDAEKEVFDLVY--SSEYAVFSLSQQPNNV-NTLYFGEGQ-------------  346 (536)
Q Consensus       287 ~l~~~~---~~~~~l~s~s-~dg~I~vwd~~~~~~~~~~--~~~~~i~~l~~~~~~~-~~l~~g~~d-------------  346 (536)
                      .+.+..   || ++|+... .++.|.+-|+.+-++..+.  .....+..++..++.. .+++.++.+             
T Consensus        89 ~~S~TdGtyDG-rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccce-eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            455543   66 6666555 6889999999988775544  3445666666654321 456655542             


Q ss_pred             -----CeEEEEECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCC--------------------------------
Q 009380          347 -----GGLNIWDVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTD--------------------------------  389 (536)
Q Consensus       347 -----g~i~i~d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~d--------------------------------  389 (536)
                           +.+.++|..+.+....+.. ......+.++++|. ++++.+.+                                
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~  245 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  245 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             hhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCC-EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence                 2367889888877666552 34566789999985 55554422                                


Q ss_pred             ------CcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEEe-CCCcEEEEeCCCCC--------cceEEec
Q 009380          390 ------GTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTS-FDDTIGIWSGVNFE--------NTSMIHH  454 (536)
Q Consensus       390 ------g~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s-~dg~I~iwd~~~~~--------~~~~~~~  454 (536)
                            +.+.+-|.+...  .........-....+.+.++|||+++++++ .+.++.|+|++...        +...+..
T Consensus       246 Gk~~eingV~VVD~~~~~--~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~  323 (459)
T d1fwxa2         246 GDYQELNGVKVVDGRKEA--SSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  323 (459)
T ss_dssp             TCSEEETTEEEEECSGG----CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred             CCcEEeCCceeecccccC--CcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe
Confidence                  223455554321  112333344455677899999999988876 68899999986322        1111111


Q ss_pred             cCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCc
Q 009380          455 NNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQ  492 (536)
Q Consensus       455 ~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~  492 (536)
                      ...  ..+..+..+|+..|....+---|..|.-|++..
T Consensus       324 e~e--lglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         324 EPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ecc--cCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            111  123344567888886666667899999999854

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.59  E-value=0.0092  Score=59.74  Aligned_cols=241  Identities=8%  Similarity=0.051  Sum_probs=136.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccC----CCCEEEEEEecCCCCEEEEEE------CCCeEEEEECCCCeEE
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH----LGPISGIVTQQYCLSKIFTSC------YDGLIRLMDAEKEVFD  318 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~~~~~~~~l~s~s------~dg~I~vwd~~~~~~~  318 (536)
                      ..|+.++.||.|.-.|..+    ++.+..+...    ...++.--...+  ..++.+.      .+|.|+-+|+.+++..
T Consensus       116 ~~i~~~~~~g~l~alda~t----G~~~w~~~~~~~~~~~~~t~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKT----GKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             TEEEEECTTSEEEEEETTT----CCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             CeEEEEeCCCcEEeeehhh----hhhhccccccccccccceeecCeEeC--CeEEEeeccccccccCcEEEEECCCCcEE
Confidence            3577778889888888887    4444333211    111111111122  3455554      3788999999999876


Q ss_pred             EeecCC--------------------------------------Cce-eEEEecCCCCCEEEEEEC--------------
Q 009380          319 LVYSSE--------------------------------------YAV-FSLSQQPNNVNTLYFGEG--------------  345 (536)
Q Consensus       319 ~~~~~~--------------------------------------~~i-~~l~~~~~~~~~l~~g~~--------------  345 (536)
                      ..+.+.                                      ..+ ...++.+.. .+++.+..              
T Consensus       190 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~-g~~y~~tg~~~p~~~~~r~g~n  268 (571)
T d2ad6a1         190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDN  268 (571)
T ss_dssp             EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCC
T ss_pred             EEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhc-CeeeeecccccCcccccccccc
Confidence            643211                                      112 224555555 56666554              


Q ss_pred             --CCeEEEEECCCCccceeEeccCCC---------eEEEEEecCCC--CEEEEEeCCCcEEEEeCCCCCCCC-------C
Q 009380          346 --QGGLNIWDVRSRKSATEWLLHEAR---------INTIDFNPRNP--NIMATSSTDGTACIWDLRSMATDK-------P  405 (536)
Q Consensus       346 --dg~i~i~d~~~~~~~~~~~~h~~~---------i~~i~~~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~-------~  405 (536)
                        ...+.-.|+++++.+..++.+...         .....+..++.  ..++.++.+|.+.++|..+++...       .
T Consensus       269 ~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~  348 (571)
T d2ad6a1         269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV  348 (571)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred             ccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence              246888899999988777632211         11122222232  256788889999999988875210       0


Q ss_pred             -----------Ccc--------------eeec-ccCc--eeEEEEccCCCeEEEEeCC----------------------
Q 009380          406 -----------EPM--------------KVLS-HKRA--VHSAYFSPSGSSLATTSFD----------------------  435 (536)
Q Consensus       406 -----------~~~--------------~~~~-~~~~--v~~l~~sp~g~~l~t~s~d----------------------  435 (536)
                                 .+.              .... ..+.  -...+++|+..++++...+                      
T Consensus       349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (571)
T d2ad6a1         349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT  428 (571)
T ss_dssp             CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred             cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence                       000              0000 0000  0135677766666554432                      


Q ss_pred             ---------------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceecc
Q 009380          436 ---------------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQ  500 (536)
Q Consensus       436 ---------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~  500 (536)
                                     |.|.-+|+.+++.............      ......+.+|++|+.|+.++.||..+|+.+.++.
T Consensus       429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~------g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG------GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS------BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCc------ceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence                           3566677777766665543221110      0112246688899999999999999999998876


Q ss_pred             CC
Q 009380          501 SP  502 (536)
Q Consensus       501 ~~  502 (536)
                      ..
T Consensus       503 l~  504 (571)
T d2ad6a1         503 MP  504 (571)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.43  E-value=0.018  Score=57.88  Aligned_cols=240  Identities=9%  Similarity=0.085  Sum_probs=137.9

Q ss_pred             ccEEEEEeCCCcEEEEECCCCCCCCCceEEeccC---C-CCEEE-EEEecCCCCEEEEEEC------CCeEEEEECCCCe
Q 009380          248 VRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTH---L-GPISG-IVTQQYCLSKIFTSCY------DGLIRLMDAEKEV  316 (536)
Q Consensus       248 ~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h---~-~~V~~-l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~  316 (536)
                      ..+|+.++.|+.|.-.|..+    ++.+..+...   . ..++. -.+.  + +.++.+..      .|.|+-+|+.+++
T Consensus       121 ~~~v~~~t~dg~l~Alda~t----G~~~w~~~~~d~~~~~~~t~~P~v~--~-~~vivg~~~~e~~~~G~v~A~Da~TG~  193 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAET----GETVWKVENSDIKVGSTLTIAPYVV--K-DKVIIGSSGAELGVRGYLTAYDVKTGE  193 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTT----CCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred             ceEEEEEeCCCCeEeecccc----CceeccccccccccccccccCCcEE--C-CeEEEeeccccccccCceEEEECCCCc
Confidence            34788888899998888887    5555554321   1 11111 1111  2 45666643      4899999999998


Q ss_pred             EEEeecCC--------------------------------------Cc-eeEEEecCCCCCEEEEEECC-----------
Q 009380          317 FDLVYSSE--------------------------------------YA-VFSLSQQPNNVNTLYFGEGQ-----------  346 (536)
Q Consensus       317 ~~~~~~~~--------------------------------------~~-i~~l~~~~~~~~~l~~g~~d-----------  346 (536)
                      ....+...                                      .. -..+++.+.. ++++.+..+           
T Consensus       194 ~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~-~lvy~~tg~~~p~~~~~r~g  272 (596)
T d1w6sa_         194 QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPG  272 (596)
T ss_dssp             EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCS
T ss_pred             EEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCC-Ceeecccccccccccccccc
Confidence            76543211                                      11 1234555555 577776543           


Q ss_pred             -----CeEEEEECCCCccceeEec--cCC-------CeEEEEE-ecCCC--CEEEEEeCCCcEEEEeCCCCCCCC-----
Q 009380          347 -----GGLNIWDVRSRKSATEWLL--HEA-------RINTIDF-NPRNP--NIMATSSTDGTACIWDLRSMATDK-----  404 (536)
Q Consensus       347 -----g~i~i~d~~~~~~~~~~~~--h~~-------~i~~i~~-~p~~~--~~l~s~s~dg~i~iwdl~~~~~~~-----  404 (536)
                           ..|.-.|+.+++.+..++.  |..       ...-+.. ..++.  ..++.+..+|.+.++|..+++...     
T Consensus       273 ~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~  352 (596)
T d1w6sa_         273 DNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLD  352 (596)
T ss_dssp             CCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred             cccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccc
Confidence                 3588899999998877762  221       1111221 12232  367788889999999988875210     


Q ss_pred             --CCc-----------ce--------------eec--cc-CceeEEEEccCCCeEEEEeCC-------------------
Q 009380          405 --PEP-----------MK--------------VLS--HK-RAVHSAYFSPSGSSLATTSFD-------------------  435 (536)
Q Consensus       405 --~~~-----------~~--------------~~~--~~-~~v~~l~~sp~g~~l~t~s~d-------------------  435 (536)
                        ...           ..              ...  +. ..-...+++|...+++....+                   
T Consensus       353 ~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~  432 (596)
T d1w6sa_         353 DTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFV  432 (596)
T ss_dssp             TTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred             ccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccc
Confidence              000           00              000  00 001234566655544443211                   


Q ss_pred             --------------------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCcccc
Q 009380          436 --------------------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRS  495 (536)
Q Consensus       436 --------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~  495 (536)
                                          |.|.-||+.+++.............      ...+..|.++++|+.||.++.||..+|+.
T Consensus       433 g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~g------g~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         433 GATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWG------GTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             CEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCS------BCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCcc------ceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence                                4566777777776655543222110      11123567888999999999999999999


Q ss_pred             ceeccC
Q 009380          496 VATLQS  501 (536)
Q Consensus       496 ~~~l~~  501 (536)
                      +.++..
T Consensus       507 LW~~~~  512 (596)
T d1w6sa_         507 LWKFKI  512 (596)
T ss_dssp             EEEEEC
T ss_pred             eeEEEC
Confidence            988864

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.37  E-value=0.023  Score=56.65  Aligned_cols=241  Identities=15%  Similarity=0.181  Sum_probs=135.8

Q ss_pred             cEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCC--C--EEEEEEecCCCCEEEEEEC------CCeEEEEECCCCeEE
Q 009380          249 RMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLG--P--ISGIVTQQYCLSKIFTSCY------DGLIRLMDAEKEVFD  318 (536)
Q Consensus       249 ~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~--~--V~~l~~~~~~~~~l~s~s~------dg~I~vwd~~~~~~~  318 (536)
                      ..++.++.++.|.-.|..+    ++.+..+..+..  .  ++..-.--+  ..++.+..      .|.|.-+|.++++..
T Consensus       118 ~~v~~~~~~g~l~Alda~t----G~~~w~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~  191 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKT----GKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKLA  191 (560)
T ss_dssp             TEEEEECTTSEEEEEETTT----CCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred             CeEEEEeCCCEEEEEECCC----CcEEeccCccCcccceeeeeeeeeec--CcccccccceeccccceEEEEECCCceEE
Confidence            4677777888888888776    455544432211  0  110000112  34444432      377999999999876


Q ss_pred             EeecC-------------------------------CCce-eEEEecCCCCCEEEEEEC-------------------CC
Q 009380          319 LVYSS-------------------------------EYAV-FSLSQQPNNVNTLYFGEG-------------------QG  347 (536)
Q Consensus       319 ~~~~~-------------------------------~~~i-~~l~~~~~~~~~l~~g~~-------------------dg  347 (536)
                      ..+..                               ...+ ..+++.+.. .+++.+..                   ..
T Consensus       192 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~-~l~y~~tgn~~~~~~~~~~~~~g~n~~s~  270 (560)
T d1kv9a2         192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLS  270 (560)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             eeeeeccccccCCccccccccccccccccccccccCCCCccccccccccc-CeeeecCCCCcccccccccccCCccccce
Confidence            55421                               0111 224556655 56665442                   23


Q ss_pred             eEEEEECCCCccceeEeccCCCe---------EEEEEecCC--CCEEEEEeCCCcEEEEeCCCCCCCCCCc------c--
Q 009380          348 GLNIWDVRSRKSATEWLLHEARI---------NTIDFNPRN--PNIMATSSTDGTACIWDLRSMATDKPEP------M--  408 (536)
Q Consensus       348 ~i~i~d~~~~~~~~~~~~h~~~i---------~~i~~~p~~--~~~l~s~s~dg~i~iwdl~~~~~~~~~~------~--  408 (536)
                      .|.-.|+++++....++.....+         .-+.+..++  ...++.++.+|.+.++|..+++......      .  
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            57788999998876666322211         111222222  2367778889999999988875210000      0  


Q ss_pred             -------e--------------e-ec-cc-CceeEEEEccCCCeEEEEeCC-----------------------------
Q 009380          409 -------K--------------V-LS-HK-RAVHSAYFSPSGSSLATTSFD-----------------------------  435 (536)
Q Consensus       409 -------~--------------~-~~-~~-~~v~~l~~sp~g~~l~t~s~d-----------------------------  435 (536)
                             .              . .. .. ..-...+++|+..+++....+                             
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                   0              0 00 00 011245677766666554322                             


Q ss_pred             -------CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          436 -------DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       436 -------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                             |.|.-||+.+++....+........      ....-.+.++++|+.||.++.||..+|+.+.++...
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~g------g~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHWNG------GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSSCCC------CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCCCCC------ceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence                   4567778777777766644322111      111235678889999999999999999999888753

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.27  E-value=0.015  Score=54.68  Aligned_cols=255  Identities=11%  Similarity=-0.036  Sum_probs=127.3

Q ss_pred             eEEecccccCcccc----ccccCCceEEEEEEecCCccEEEEEeCC-CcEEEEECCCCCCCCCceEEeccCCCCEEEEEE
Q 009380          216 CVDIGSLTLKPENI----ARIMPGRITQMKFLPCSDVRMVVAGSKL-GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVT  290 (536)
Q Consensus       216 ~v~lw~~~~~~~~~----~~~~~~~I~~v~~~p~~~~~~l~tg~~d-g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~  290 (536)
                      .+.+||.....-..    ...+.......++.+  ++.+++.|+.+ ..+.+||..+..  ......... ...-...+.
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~--~g~i~v~Gg~~~~~~~~yd~~~~~--w~~~~~~~~-~r~~~~~~~  127 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG--NGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQV-ARGYQSSAT  127 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECT--TSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSS-CCSSCEEEE
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEec--CCcEEEeecCCCcceeEecCccCc--ccccccccc-cccccceee
Confidence            46778875432111    111222234567778  99999998765 589999987632  111111111 122235667


Q ss_pred             ecCCCCEEEEEECC------CeEEEEECCCCeEEEeecCCCc---------------eeEEEecCCCCCEEEEEECCCeE
Q 009380          291 QQYCLSKIFTSCYD------GLIRLMDAEKEVFDLVYSSEYA---------------VFSLSQQPNNVNTLYFGEGQGGL  349 (536)
Q Consensus       291 ~~~~~~~l~s~s~d------g~I~vwd~~~~~~~~~~~~~~~---------------i~~l~~~~~~~~~l~~g~~dg~i  349 (536)
                      .+++ .+++.++.+      ..+.+||..+.....+......               -..+...+++ .+++.+...+.+
T Consensus       128 ~~dG-~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~g~~~~~~  205 (387)
T d1k3ia3         128 MSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG-SVFQAGPSTAMN  205 (387)
T ss_dssp             CTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGG-CEEECCSSSEEE
T ss_pred             ecCC-ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCC-CEEEecCcCCcE
Confidence            7787 788887653      4689999998876543221100               0111122333 566666666677


Q ss_pred             EEEECCCCccceeEe------ccCC--CeEEEEEecCCCCEEEEEeCC--------CcEEEEeCCCCCCCCCCccee---
Q 009380          350 NIWDVRSRKSATEWL------LHEA--RINTIDFNPRNPNIMATSSTD--------GTACIWDLRSMATDKPEPMKV---  410 (536)
Q Consensus       350 ~i~d~~~~~~~~~~~------~h~~--~i~~i~~~p~~~~~l~s~s~d--------g~i~iwdl~~~~~~~~~~~~~---  410 (536)
                      .++|..+........      .+..  .-.++.+...+.++++.|+..        ....+.++....... .....   
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  284 (387)
T d1k3ia3         206 WYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP-NTVFASNG  284 (387)
T ss_dssp             EEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC-EEEECTTC
T ss_pred             EecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCC-Cceeeccc
Confidence            777776654321111      0111  112333333333566666532        133444443321100 00000   


Q ss_pred             ecccCceeEEEEccCCCeEEEEeCCC-----------cEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEE
Q 009380          411 LSHKRAVHSAYFSPSGSSLATTSFDD-----------TIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIG  479 (536)
Q Consensus       411 ~~~~~~v~~l~~sp~g~~l~t~s~dg-----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g  479 (536)
                      ..+...-.+....++|+++++|+.+.           ++.+||..+.+-.. +. .....+.... .+...+||+.|+.|
T Consensus       285 ~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~-~~~~~R~~Hs-~a~l~~dG~v~v~G  361 (387)
T d1k3ia3         285 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QN-PNSIVRVYHS-ISLLLPDGRVFNGG  361 (387)
T ss_dssp             CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CC-CCSSCCCTTE-EEEECTTSCEEEEE
T ss_pred             cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE-CC-CCCCcccceE-EEEECCCCEEEEEe
Confidence            11222334566678999999988531           47788876543111 11 1111111111 13346899999888


Q ss_pred             cC
Q 009380          480 NM  481 (536)
Q Consensus       480 s~  481 (536)
                      +.
T Consensus       362 G~  363 (387)
T d1k3ia3         362 GG  363 (387)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.21  E-value=0.05  Score=54.24  Aligned_cols=31  Identities=13%  Similarity=0.134  Sum_probs=27.5

Q ss_pred             CCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          472 DDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      .|.+|++|+.|+.++.||..+|+.+.++...
T Consensus       487 agglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            6778999999999999999999999887653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.05  E-value=0.18  Score=49.90  Aligned_cols=67  Identities=13%  Similarity=0.200  Sum_probs=44.9

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCC-----CceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEe
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWL  364 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-----~~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~  364 (536)
                      ..|+.++.||.|...|.++++........     ..+++--...+  ..++++..      .|.|.-+|+++|+.+..+.
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC--CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            57888899999999999999876544321     11221111112  35666653      6789999999999877654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.99  E-value=0.089  Score=52.11  Aligned_cols=231  Identities=13%  Similarity=0.162  Sum_probs=125.7

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCCCcee--EEEecC--CCCCEEEEEEC------CCeEEEEECCCCccceeEec
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVF--SLSQQP--NNVNTLYFGEG------QGGLNIWDVRSRKSATEWLL  365 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~--~l~~~~--~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~~  365 (536)
                      ..++.+..|+.|...|..+++............  .+.-.|  .+ ..++++..      .|.|.-+|.++|+.+-.+..
T Consensus       118 ~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeec-CcccccccceeccccceEEEEECCCceEEeeeee
Confidence            578889999999999999998766554322111  111111  01 34555442      36799999999998777641


Q ss_pred             c------------------------------CCCe-EEEEEecCCCCEEEEEeC-------------------CCcEEEE
Q 009380          366 H------------------------------EARI-NTIDFNPRNPNIMATSST-------------------DGTACIW  395 (536)
Q Consensus       366 h------------------------------~~~i-~~i~~~p~~~~~l~s~s~-------------------dg~i~iw  395 (536)
                      -                              ...+ ..+++.+.. .++..+..                   ...|.-.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~-~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl  275 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccccccCCccccccccccccccccccccccCCCCccccccccccc-CeeeecCCCCcccccccccccCCccccceeeEEe
Confidence            1                              0111 124555544 33333221                   1245566


Q ss_pred             eCCCCCCCCCCcceee--ccc-------CceeEEEEccCC---CeEEEEeCCCcEEEEeCCCCCcceEEeccCC------
Q 009380          396 DLRSMATDKPEPMKVL--SHK-------RAVHSAYFSPSG---SSLATTSFDDTIGIWSGVNFENTSMIHHNNQ------  457 (536)
Q Consensus       396 dl~~~~~~~~~~~~~~--~~~-------~~v~~l~~sp~g---~~l~t~s~dg~I~iwd~~~~~~~~~~~~~~~------  457 (536)
                      |+++++    ..-...  .|.       ....-+....+|   ..++.++.+|.+.++|..+++.+........      
T Consensus       276 d~~tG~----~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~  351 (560)
T d1kv9a2         276 RPDTGK----LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV  351 (560)
T ss_dssp             CTTTCC----EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred             cCCccc----eeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccccc
Confidence            777654    111111  121       111112222244   3677788999999999998887654432110      


Q ss_pred             ---CCceee------------e----------eEEEEcCCCCEEEEEcC-------------------------------
Q 009380          458 ---TGRWIS------------S----------FRAIWGWDDSCVFIGNM-------------------------------  481 (536)
Q Consensus       458 ---~~~~~~------------~----------~~~~~s~~g~~l~~gs~-------------------------------  481 (536)
                         .+..+.            .          ...+++|+..++++...                               
T Consensus       352 d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (560)
T d1kv9a2         352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV  431 (560)
T ss_dssp             CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred             ChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCC
Confidence               000000            0          01345666666555332                               


Q ss_pred             -----CCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEecC
Q 009380          482 -----TRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTSD  536 (536)
Q Consensus       482 -----dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~d  536 (536)
                           .|.|.-||+.+++.+.++....... .-.++-   .+.++..|+.||.++-+|.+
T Consensus       432 p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~-gg~l~T---agglVF~G~~dg~l~A~Da~  487 (560)
T d1kv9a2         432 PAAVVSGALLAWDPVKQKAAWKVPYPTHWN-GGTLST---AGNLVFQGTAAGQMHAYSAD  487 (560)
T ss_dssp             CGGGCEEEEEEEETTTTEEEEEEEESSSCC-CCEEEE---TTTEEEEECTTSEEEEEETT
T ss_pred             CCcccccceEEEeCCCCeEeeeccCCCCCC-CceeEE---CCCEEEEECCCCcEEEEECC
Confidence                 2467788888888877665321110 011222   35788889999999999864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.84  E-value=0.21  Score=47.37  Aligned_cols=248  Identities=12%  Similarity=-0.052  Sum_probs=125.2

Q ss_pred             eeeecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCC---------
Q 009380          187 KTCKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKL---------  257 (536)
Q Consensus       187 ~~~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~d---------  257 (536)
                      ..+.+||+++.++...+..     +..-..+++.|+......-..........++|++  |+..|+....+         
T Consensus       128 ~~~~~Spd~~~la~s~d~~-----G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~--D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSAS-----GSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTH--DGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EEEEECTTSSEEEEEEEET-----TCSCEEEEEEETTTTEEEEEEEEEECSCCEEECT--TSSEEEEEECCCCSSCCSSS
T ss_pred             cceEecCCCCEEEEEeccc-----cCchheeEEeccCcceecccccccccccceEEcC--CCCEEEEEEeccccCccccc
Confidence            3456899999999663222     2222477888875543221111122336788999  88877654332         


Q ss_pred             -------CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEEC---CCe--EEEEECCCCe--------E
Q 009380          258 -------GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCY---DGL--IRLMDAEKEV--------F  317 (536)
Q Consensus       258 -------g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~---dg~--I~vwd~~~~~--------~  317 (536)
                             ..|..|.+.+.......+.........+..+..+.++ .+++....   ++.  +.+.|+....        .
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  279 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCc-ceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence                   2577888876432222333322333456777888888 77654322   333  3444543321        1


Q ss_pred             EEeecC-CCceeEEEecCCCCCEEEEEE----CCCeEEEEECCCCcc--ceeEec-cCCCeEEEEEecCCCCEEEEEeCC
Q 009380          318 DLVYSS-EYAVFSLSQQPNNVNTLYFGE----GQGGLNIWDVRSRKS--ATEWLL-HEARINTIDFNPRNPNIMATSSTD  389 (536)
Q Consensus       318 ~~~~~~-~~~i~~l~~~~~~~~~l~~g~----~dg~i~i~d~~~~~~--~~~~~~-h~~~i~~i~~~p~~~~~l~s~s~d  389 (536)
                      ..+... .....-+. +. + ..++.-+    .++.|...++.....  ...+-. +...+..-.+...+..+++..-.+
T Consensus       280 ~~~~~~~~~~~~~~~-~~-~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         280 VKLIDNFEGEYDYVT-NE-G-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             EEEECSSSSCEEEEE-EE-T-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eEeecccccceEEEe-cC-C-ceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC
Confidence            122222 22222222 22 2 2333333    346788888876543  233333 444454333333332344454455


Q ss_pred             C--cEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE--e--CCCcEEEEeCCCCCcc
Q 009380          390 G--TACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT--S--FDDTIGIWSGVNFENT  449 (536)
Q Consensus       390 g--~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~--s--~dg~I~iwd~~~~~~~  449 (536)
                      +  .|+++++..+.    .........+.|..+...++...+...  +  .=.++.-||+.+++..
T Consensus       357 ~~~~l~v~~~~~~~----~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         357 VKNTLQLHDLATGA----LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             TEEEEEEEETTTCC----EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             CEeEEEEEECCCCc----EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            4  47889988753    111122233455555555544433322  2  1256888888777543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.52  E-value=0.24  Score=43.74  Aligned_cols=256  Identities=8%  Similarity=0.057  Sum_probs=154.1

Q ss_pred             CcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecCCCC
Q 009380          258 GNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNV  337 (536)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~  337 (536)
                      .+|.|.|+....   ...+.-..    .-+.-.+|.. +.|+.-+ ..+++++|+++......+....+|.--.|-.+  
T Consensus        45 ~~VvIidl~n~~---~~~Rrpi~----AdsAIMhP~~-~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~--  113 (327)
T d1utca2          45 AQVVIIDMNDPS---NPIRRPIS----ADSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--  113 (327)
T ss_dssp             EEEEEEETTSTT---SCEEEECC----CSEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS--
T ss_pred             ceEEEEECCCCC---cceecccc----hhhhhcCCCC-cEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC--
Confidence            478899998632   22222111    1234466775 6665555 67899999999988888888888888888765  


Q ss_pred             CEEEEEECCCeEEEEECCCC-ccceeEeccC----CCeEEEEEecCCCCEEEEEe--C----CCcEEEEeCCCCCCCCCC
Q 009380          338 NTLYFGEGQGGLNIWDVRSR-KSATEWLLHE----ARINTIDFNPRNPNIMATSS--T----DGTACIWDLRSMATDKPE  406 (536)
Q Consensus       338 ~~l~~g~~dg~i~i~d~~~~-~~~~~~~~h~----~~i~~i~~~p~~~~~l~s~s--~----dg~i~iwdl~~~~~~~~~  406 (536)
                      +.|+..+.. .|+-|++... .+...+..|.    ..|-.-..+++...++++|=  .    .|.+.+|.....     .
T Consensus       114 ~~L~lVT~t-aVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-----~  187 (327)
T d1utca2         114 NTVALVTDN-AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----V  187 (327)
T ss_dssp             SEEEEECSS-EEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-----E
T ss_pred             CEEEEEcCC-ceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-----c
Confidence            477777765 8999999543 4566665443    45666677776643333331  1    367889998763     3


Q ss_pred             cceeecccCceeEEEEccCC---CeEEEEe---CCCcEEEEeCCCCC---cc---eEEe--c-cCCCCceeeeeEEEEcC
Q 009380          407 PMKVLSHKRAVHSAYFSPSG---SSLATTS---FDDTIGIWSGVNFE---NT---SMIH--H-NNQTGRWISSFRAIWGW  471 (536)
Q Consensus       407 ~~~~~~~~~~v~~l~~sp~g---~~l~t~s---~dg~I~iwd~~~~~---~~---~~~~--~-~~~~~~~~~~~~~~~s~  471 (536)
                      ...+.+|......+.+.-+.   +.|+.+.   ..+.+.|.++....   ..   ....  . ....+..  .+.+..|+
T Consensus       188 sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DF--Pvamqvs~  265 (327)
T d1utca2         188 SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF--PVAMQISE  265 (327)
T ss_dssp             EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCC--EEEEEEET
T ss_pred             CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCc--EEEEEeec
Confidence            44555776555555443221   2333322   23578888886521   11   1111  1 1111211  22355677


Q ss_pred             CCCEEEEEcCCCcEEEEcCCccccceeccCCceeeeeeeEeecCCCCCEEEEEccCCeEEEEec
Q 009380          472 DDSCVFIGNMTRTVEVISPAQRRSVATLQSPYISAIPCRFHAHPHQVGTLAGATGGGQVYVWTS  535 (536)
Q Consensus       472 ~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~lasgs~Dg~v~iW~~  535 (536)
                      .-..++.-+.-|.|++||+.++.++..-.-....+. + .+.+. ...-+++.+.+|.|.--.+
T Consensus       266 kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF-~-~a~~~-~~~Gi~~VNr~GqVl~vsv  326 (327)
T d1utca2         266 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF-V-TAPHE-ATAGIIGVNRKGQVLSVCV  326 (327)
T ss_dssp             TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-E-EEEET-TTTEEEEEETTSEEEEEEE
T ss_pred             cCCEEEEEecCcEEEEEEcccccEEEEeecCCCceE-E-eccCC-CCceEEEECCCCeEEEEEe
Confidence            777899999999999999999998876543222222 2 22333 2345666678888765443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.50  E-value=0.25  Score=43.64  Aligned_cols=227  Identities=11%  Similarity=0.129  Sum_probs=138.3

Q ss_pred             eecCCCCcccccccccccccccccccceEEecccccCccccccccCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCC
Q 009380          189 CKDEGLGVGSCDLIKGVVKTEKIEVGSCVDIGSLTLKPENIARIMPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQ  268 (536)
Q Consensus       189 ~~~s~~~~~l~~~~~~~~~~~~~~~dg~v~lw~~~~~~~~~~~~~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~  268 (536)
                      .-..|..+++|         +++  ...+.++|++.+........+..|.--.|-.  + +.|+--+ +..|+-|+++..
T Consensus        68 AIMhP~~~IiA---------Lra--g~~LQiFnletK~klks~~~~e~VvfWkWis--~-~~L~lVT-~taVYHW~~~g~  132 (327)
T d1utca2          68 AIMNPASKVIA---------LKA--GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--L-NTVALVT-DNAVYHWSMEGE  132 (327)
T ss_dssp             EEECSSSSEEE---------EEE--TTEEEEEETTTTEEEEEEECSSCCCEEEESS--S-SEEEEEC-SSEEEEEESSSS
T ss_pred             hhcCCCCcEEE---------Eec--CCeEEEEehhHhhhhceEEcCCCcEEEEecC--C-CEEEEEc-CCceEEEcccCC
Confidence            33456666666         122  4589999987766544445578887778864  3 4555444 347999999643


Q ss_pred             CCCCCceEEeccCC----CCEEEEEEecCCCCEEEEEE-------CCCeEEEEECCCCeEEEeecCCCceeEEEecCCC-
Q 009380          269 QDEDNGIYLFRTHL----GPISGIVTQQYCLSKIFTSC-------YDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNN-  336 (536)
Q Consensus       269 ~~~~~~~~~~~~h~----~~V~~l~~~~~~~~~l~s~s-------~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~-  336 (536)
                         ..+...|..|.    ..|-.-..+++. ++++..+       -.|.+.+|..+.+....+.+|......+.+.-+. 
T Consensus       133 ---s~P~k~fdR~~~L~~~QIInY~~d~~~-kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~  208 (327)
T d1utca2         133 ---SQPVKMFDRHSSLAGCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAE  208 (327)
T ss_dssp             ---CCCEEEEECCGGGTTCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSS
T ss_pred             ---CCchhhhhhcccccCceEEEEEECCCC-CEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCC
Confidence               35666666654    356666777777 6655433       2478899999999888888877666555543221 


Q ss_pred             -CCEEEEEEC---CCeEEEEECCCCc---cc---ee--E-e---ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCC
Q 009380          337 -VNTLYFGEG---QGGLNIWDVRSRK---SA---TE--W-L---LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSM  400 (536)
Q Consensus       337 -~~~l~~g~~---dg~i~i~d~~~~~---~~---~~--~-~---~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~  400 (536)
                       ..+++.+..   .+.+++.++....   ..   ..  + .   ...+---++..++.. .++..-+.-|.|++||+.++
T Consensus       209 ~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky-giiyviTK~G~i~lyDleTg  287 (327)
T d1utca2         209 ESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETG  287 (327)
T ss_dssp             CEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTC
T ss_pred             CceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC-CEEEEEecCcEEEEEEcccc
Confidence             124444432   3689999987532   11   11  1 1   123445677888755 47778888999999999997


Q ss_pred             CCCCCCcceeecccCceeEEEEccCCCeEEEEeCCCcEE
Q 009380          401 ATDKPEPMKVLSHKRAVHSAYFSPSGSSLATTSFDDTIG  439 (536)
Q Consensus       401 ~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s~dg~I~  439 (536)
                      .    .+..-.-....|...+-+.+..=+++...+|.|.
T Consensus       288 t----~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         288 T----CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             C----EEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             c----EEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            4    3333333444555444444433455555566543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.46  E-value=0.5  Score=46.71  Aligned_cols=61  Identities=8%  Similarity=0.011  Sum_probs=43.3

Q ss_pred             CcEEEEeCCCCCcceEEeccCCCCceeeeeEEEEcCCCCEEEEEcCCCcEEEEcCCccccceeccCC
Q 009380          436 DTIGIWSGVNFENTSMIHHNNQTGRWISSFRAIWGWDDSCVFIGNMTRTVEVISPAQRRSVATLQSP  502 (536)
Q Consensus       436 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~gs~dg~I~v~d~~~~~~~~~l~~~  502 (536)
                      |.|.-+|+.+++.........+...      ...+..+.+|++|+.||.++.||..+|+.+.++...
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~------g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWA------GVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCS------CCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCcc------ceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            4577778888777766643322111      112346778889999999999999999999888753

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.25  E-value=0.65  Score=45.92  Aligned_cols=67  Identities=15%  Similarity=0.181  Sum_probs=45.7

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCC-----CceeEEEecCCCCCEEEEEEC------CCeEEEEECCCCccceeEe
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSE-----YAVFSLSQQPNNVNTLYFGEG------QGGLNIWDVRSRKSATEWL  364 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~-----~~i~~l~~~~~~~~~l~~g~~------dg~i~i~d~~~~~~~~~~~  364 (536)
                      ..|+.++.|+.|.-.|.++++....+...     ..+++--..-+  +.+++|..      .|.|+-+|.++|+.+.++.
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~--~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEEC--CeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            47899999999999999999877655321     11111101112  46677654      4899999999999887654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.059  Score=53.76  Aligned_cols=82  Identities=15%  Similarity=0.219  Sum_probs=55.9

Q ss_pred             CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCC-eEEEEEecCCCCEE
Q 009380          305 GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEAR-INTIDFNPRNPNIM  383 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~-i~~i~~~p~~~~~l  383 (536)
                      |.|.-+|+.+++.........++.+-.....+ .++++|+.||.++.+|.++|+.+..+...... -.-|.|..+|.+++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstag-glVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcC-CeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            56888888888777666544444432233334 68889999999999999999999888732221 12256667787776


Q ss_pred             EEEe
Q 009380          384 ATSS  387 (536)
Q Consensus       384 ~s~s  387 (536)
                      +...
T Consensus       545 ~i~a  548 (582)
T d1flga_         545 GVTV  548 (582)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.49  E-value=0.87  Score=41.36  Aligned_cols=189  Identities=11%  Similarity=0.098  Sum_probs=101.2

Q ss_pred             eEEEEEEecCCccEEEEEeC------------CCcEEEEECCCCCCCCCceEEeccC----CCCEEEEEE--ecCCCCEE
Q 009380          237 ITQMKFLPCSDVRMVVAGSK------------LGNITFWNLDSQQDEDNGIYLFRTH----LGPISGIVT--QQYCLSKI  298 (536)
Q Consensus       237 I~~v~~~p~~~~~~l~tg~~------------dg~v~iwd~~~~~~~~~~~~~~~~h----~~~V~~l~~--~~~~~~~l  298 (536)
                      --++...|  +|..+++++.            .|.|.++|+.+.......+......    .-.-..+..  .+++.-+|
T Consensus        37 ~EDi~~~~--dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          37 SEDLEILP--NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             CCEEEECT--TSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             cceEEECC--CCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            34577777  7766666532            4889999988642211111111110    012234443  33442356


Q ss_pred             EEEE---CCCeEEEEECCCC--eEEEe--ecC--CCceeEEEecCCCCCEEEEEE-----------------CCCeEEEE
Q 009380          299 FTSC---YDGLIRLMDAEKE--VFDLV--YSS--EYAVFSLSQQPNNVNTLYFGE-----------------GQGGLNIW  352 (536)
Q Consensus       299 ~s~s---~dg~I~vwd~~~~--~~~~~--~~~--~~~i~~l~~~~~~~~~l~~g~-----------------~dg~i~i~  352 (536)
                      ++..   ...+|-+|++...  .....  ..+  .....++.+..++ .++++-.                 ..|.|..|
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            6654   3567888887543  22221  122  2456788887776 4444411                 11234444


Q ss_pred             ECCCCccceeEeccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCcceeecccCceeEEEEccCCCeEEEE
Q 009380          353 DVRSRKSATEWLLHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEPMKVLSHKRAVHSAYFSPSGSSLATT  432 (536)
Q Consensus       353 d~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~~~~~~v~~l~~sp~g~~l~t~  432 (536)
                      |  .++ .......-...+.|+++|++..++++-+..+.|++|++....  .........-....-.+.+.+.+..+.++
T Consensus       194 ~--~~~-~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~--~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         194 S--PND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW--TLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             C--SSC-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS--CEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             c--CCc-eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc--ccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            4  333 223333345689999999986677777778999999987532  11122222345566778887643334444


Q ss_pred             e
Q 009380          433 S  433 (536)
Q Consensus       433 s  433 (536)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.30  E-value=0.13  Score=51.04  Aligned_cols=83  Identities=8%  Similarity=0.031  Sum_probs=53.3

Q ss_pred             CeEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEeccCCCe-EEEEEecCCCCEE
Q 009380          305 GLIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWLLHEARI-NTIDFNPRNPNIM  383 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~h~~~i-~~i~~~p~~~~~l  383 (536)
                      |.|.-||+.+++.........+...=...-.+ .++++|+.||.++.||.++|+.+.++....... .-+.|.-+|.+++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstag-glVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcC-CEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            35777888888776655544333221222234 688899999999999999999998887322111 1145555676676


Q ss_pred             EEEeC
Q 009380          384 ATSST  388 (536)
Q Consensus       384 ~s~s~  388 (536)
                      +..+.
T Consensus       536 ~v~~G  540 (573)
T d1kb0a2         536 SVAVG  540 (573)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            66553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.12  E-value=1.4  Score=41.42  Aligned_cols=209  Identities=7%  Similarity=-0.006  Sum_probs=104.0

Q ss_pred             CEEEEEEecCCCCEEE-EEECCC----eEEEEECCCCeEEEeecCCCceeEEEecCCCCCEEEEEEC-------------
Q 009380          284 PISGIVTQQYCLSKIF-TSCYDG----LIRLMDAEKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEG-------------  345 (536)
Q Consensus       284 ~V~~l~~~~~~~~~l~-s~s~dg----~I~vwd~~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~-------------  345 (536)
                      .+..++++|++ ++++ +-+.+|    .|+++|+.+++.....-.......++|.+++..++++.-.             
T Consensus       126 ~~~~~~~Spd~-~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         126 ALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             eecceEecCCC-CEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            34566789998 5554 555554    6999999999865432222223578999998444444321             


Q ss_pred             --CCeEEEEECCCCccc--eeEeccC--CCeEEEEEecCCCCEEEEEeC--CCc--EEEEeCCCCCCCCC---Ccceeec
Q 009380          346 --QGGLNIWDVRSRKSA--TEWLLHE--ARINTIDFNPRNPNIMATSST--DGT--ACIWDLRSMATDKP---EPMKVLS  412 (536)
Q Consensus       346 --dg~i~i~d~~~~~~~--~~~~~h~--~~i~~i~~~p~~~~~l~s~s~--dg~--i~iwdl~~~~~~~~---~~~~~~~  412 (536)
                        ...|..+.+.+...-  ..+....  ..+..+..++++..++++...  +..  +.+.|+........   .......
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  284 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence              125888888776442  2333322  346677788887544444432  333  44445544321100   1111222


Q ss_pred             -ccCceeEEEEccCCCeEEEEeC---CCcEEEEeCCCCCcc--eEEeccCCCCceeeeeEEEEcCCCCEEEEE-cCC--C
Q 009380          413 -HKRAVHSAYFSPSGSSLATTSF---DDTIGIWSGVNFENT--SMIHHNNQTGRWISSFRAIWGWDDSCVFIG-NMT--R  483 (536)
Q Consensus       413 -~~~~v~~l~~sp~g~~l~t~s~---dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-s~d--g  483 (536)
                       .......+ .+..+.+++....   ++.|...++.+....  ..+-......  +..  ..+...+.+|+.. ..+  .
T Consensus       285 ~~~~~~~~~-~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~--~~~--~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         285 NFEGEYDYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD--VLE--WVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             SSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSC--EEE--EEEEETTTEEEEEEEETTEE
T ss_pred             ccccceEEE-ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcc--eee--eEEEEECCEEEEEEEcCCEe
Confidence             22222222 2223333333332   356777777654322  2221111111  111  1223334455544 344  4


Q ss_pred             cEEEEcCCcccccee
Q 009380          484 TVEVISPAQRRSVAT  498 (536)
Q Consensus       484 ~I~v~d~~~~~~~~~  498 (536)
                      .|.+++..++.....
T Consensus       360 ~l~v~~~~~~~~~~~  374 (430)
T d1qfma1         360 TLQLHDLATGALLKI  374 (430)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCcEEEe
Confidence            588999988765443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.07  E-value=1.2  Score=40.43  Aligned_cols=202  Identities=8%  Similarity=0.017  Sum_probs=105.0

Q ss_pred             cceeeeecCCCCcccccccc--cccccccccccceEEecccccCccccc--cccCC-------ceEEEEEEecCCcc-EE
Q 009380          184 NGFKTCKDEGLGVGSCDLIK--GVVKTEKIEVGSCVDIGSLTLKPENIA--RIMPG-------RITQMKFLPCSDVR-MV  251 (536)
Q Consensus       184 ~~v~~~~~s~~~~~l~~~~~--~~~~~~~~~~dg~v~lw~~~~~~~~~~--~~~~~-------~I~~v~~~p~~~~~-~l  251 (536)
                      .+-+.+...++|..+..+..  ..+..+.....|.+.++|+........  ....+       .-..+.+....++. +|
T Consensus        35 ~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          35 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             SCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEE
Confidence            34556677788877754321  222222233458888888754322221  11111       22344443322444 34


Q ss_pred             EEE---eCCCcEEEEECCCCCCCCCceEEec-cCCCCEEEEEEecCCCCEEEEEE--C-------------CCeEEEEEC
Q 009380          252 VAG---SKLGNITFWNLDSQQDEDNGIYLFR-THLGPISGIVTQQYCLSKIFTSC--Y-------------DGLIRLMDA  312 (536)
Q Consensus       252 ~tg---~~dg~v~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s--~-------------dg~I~vwd~  312 (536)
                      ++.   ....+|.+|++.........+.++. ......++|.+..++ .+++|-.  .             -+...+|..
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            433   2345788888765321111112222 123457899998887 6767621  1             123445555


Q ss_pred             CCCeEEEeecCCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeEe--ccCCCeEEEEEecCCCCEEEEE
Q 009380          313 EKEVFDLVYSSEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEWL--LHEARINTIDFNPRNPNIMATS  386 (536)
Q Consensus       313 ~~~~~~~~~~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~--~h~~~i~~i~~~p~~~~~l~s~  386 (536)
                      ..+........-.....|+++|++..++++-+..+.|++|++.....+....  .-....-.|.+.+.++.+.+++
T Consensus       194 ~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         194 SPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             CSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             cCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            5555554444446788999999984444555677899999987544332221  2334456677776444455444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.67  E-value=1.5  Score=39.74  Aligned_cols=202  Identities=9%  Similarity=0.086  Sum_probs=111.3

Q ss_pred             CEEEEEECCCeEEEEECCCCeEEEeecCCCceeEEEecC----CC-CCEEEEEE-CC---CeEEEEECCC-CccceeEec
Q 009380          296 SKIFTSCYDGLIRLMDAEKEVFDLVYSSEYAVFSLSQQP----NN-VNTLYFGE-GQ---GGLNIWDVRS-RKSATEWLL  365 (536)
Q Consensus       296 ~~l~s~s~dg~I~vwd~~~~~~~~~~~~~~~i~~l~~~~----~~-~~~l~~g~-~d---g~i~i~d~~~-~~~~~~~~~  365 (536)
                      .+++.....+-|.+||++...+..+  ..+.+..+..-.    .+ ...+++++ .+   -+|.+|.+.. ...+..+..
T Consensus        41 SlI~gTdK~~Gl~vYdL~G~~l~~~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEGKMLHSY--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             CEEEEEETTSCCEEEETTCCEEEEC--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             cEEEEEcCcCCEEEEcCCCcEEEec--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            6777777777799999975554433  234555555432    11 12344444 22   3677887753 222332221


Q ss_pred             -------cCCCeEEEEE--ecCCCC-EEEEEeCCCcEEEEeCCCCCCC--CCCcceeecccCceeEEEEccCCCeEEEEe
Q 009380          366 -------HEARINTIDF--NPRNPN-IMATSSTDGTACIWDLRSMATD--KPEPMKVLSHKRAVHSAYFSPSGSSLATTS  433 (536)
Q Consensus       366 -------h~~~i~~i~~--~p~~~~-~l~s~s~dg~i~iwdl~~~~~~--~~~~~~~~~~~~~v~~l~~sp~g~~l~t~s  433 (536)
                             ....+..+|+  ++.++. ++++...+|.+..|.+......  .......+.....+..|.+++....|+.+-
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisE  198 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAE  198 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEec
Confidence                   1234677777  555433 5666777899998877442211  112333345667899999999888899988


Q ss_pred             CCCcEEEEeCC--CCCcceEEecc-C-CCCceeeeeEEEEcCCCC-E-EEEEcCCCcEEEEcCCcc-ccceec
Q 009380          434 FDDTIGIWSGV--NFENTSMIHHN-N-QTGRWISSFRAIWGWDDS-C-VFIGNMTRTVEVISPAQR-RSVATL  499 (536)
Q Consensus       434 ~dg~I~iwd~~--~~~~~~~~~~~-~-~~~~~~~~~~~~~s~~g~-~-l~~gs~dg~I~v~d~~~~-~~~~~l  499 (536)
                      .+.-|..++..  .......+... . .....+--+.+--..++. | |++.-.+++..|||..+. +.+..|
T Consensus       199 E~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             TTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceE
Confidence            87767666654  22222322211 1 111122222232233333 4 444445688999998763 444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.10  E-value=2  Score=38.88  Aligned_cols=197  Identities=7%  Similarity=0.104  Sum_probs=113.4

Q ss_pred             CccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEec----CCC-CEEEEEEC--C--CeEEEEECCC--C
Q 009380          247 DVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQ----YCL-SKIFTSCY--D--GLIRLMDAEK--E  315 (536)
Q Consensus       247 ~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~----~~~-~~l~s~s~--d--g~I~vwd~~~--~  315 (536)
                      +..+|+...+.+-|.+||++     ++.+..+.  .+.++.|..-.    .+. ..|+.++.  +  .+|.+|.+..  .
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-----G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-----GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-----CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             CccEEEEEcCcCCEEEEcCC-----CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            55677777888889999997     56665553  35666666542    111 23455552  2  3688887753  3


Q ss_pred             eEEEeec-------CCCceeEEEe--cCCCCC-EEEEEECCCeEEEEECCC---Cc----cceeEeccCCCeEEEEEecC
Q 009380          316 VFDLVYS-------SEYAVFSLSQ--QPNNVN-TLYFGEGQGGLNIWDVRS---RK----SATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       316 ~~~~~~~-------~~~~i~~l~~--~~~~~~-~l~~g~~dg~i~i~d~~~---~~----~~~~~~~h~~~i~~i~~~p~  378 (536)
                      ....+..       ....+..+|+  ++.+.. ++++...+|.+..|.+..   +.    .++.+. ....+..+.+.+.
T Consensus       112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde  190 (353)
T d1h6la_         112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDE  190 (353)
T ss_dssp             EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETT
T ss_pred             ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCC
Confidence            3322211       1234677777  555434 566677789998887742   22    234444 4567888899987


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCCCCcceee---cccCceeEEEEcc--CCC-eEEEEe-CCCcEEEEeCCCC-Ccce
Q 009380          379 NPNIMATSSTDGTACIWDLRSMATDKPEPMKVL---SHKRAVHSAYFSP--SGS-SLATTS-FDDTIGIWSGVNF-ENTS  450 (536)
Q Consensus       379 ~~~~l~s~s~dg~i~iwdl~~~~~~~~~~~~~~---~~~~~v~~l~~sp--~g~-~l~t~s-~dg~I~iwd~~~~-~~~~  450 (536)
                      + ..|..+-++.-|..++..-............   .....+-.|+.-.  ++. ||++++ .+++..|||.... ..+.
T Consensus       191 ~-~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g  269 (353)
T d1h6la_         191 Y-GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVA  269 (353)
T ss_dssp             T-TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             C-CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccc
Confidence            6 5777777776565555543221111111111   1345677776543  333 554444 6788999998653 4444


Q ss_pred             EE
Q 009380          451 MI  452 (536)
Q Consensus       451 ~~  452 (536)
                      .+
T Consensus       270 ~F  271 (353)
T d1h6la_         270 DF  271 (353)
T ss_dssp             EE
T ss_pred             eE
Confidence            44

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=2.8  Score=38.31  Aligned_cols=129  Identities=6%  Similarity=0.028  Sum_probs=76.8

Q ss_pred             ceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCceEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCC
Q 009380          236 RITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGIYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKE  315 (536)
Q Consensus       236 ~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~  315 (536)
                      .|..++|+.  +  .|++.. ++.+..++...    .........-..++.++.++|   ..++....+|.+.++++..+
T Consensus        88 ~v~~vafs~--d--~l~v~~-~~~l~~~~~~~----l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~  155 (381)
T d1xipa_          88 DVIFVCFHG--D--QVLVST-RNALYSLDLEE----LSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTK  155 (381)
T ss_dssp             TEEEEEEET--T--EEEEEE-SSEEEEEESSS----TTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTC
T ss_pred             CeEEEEeeC--C--EEEEEe-CCCEEEEEeec----cccccccccccccccceecCC---ceeEEEecCCCEEEEEeccC
Confidence            689999975  4  455443 46788888775    333444444456788888887   45777788999999999887


Q ss_pred             eEEEee------cCCCceeEEEecCCCCCEEEEEECCCeEEE-EECCCCccceeEeccCCCeEEEEEecC
Q 009380          316 VFDLVY------SSEYAVFSLSQQPNNVNTLYFGEGQGGLNI-WDVRSRKSATEWLLHEARINTIDFNPR  378 (536)
Q Consensus       316 ~~~~~~------~~~~~i~~l~~~~~~~~~l~~g~~dg~i~i-~d~~~~~~~~~~~~h~~~i~~i~~~p~  378 (536)
                      ....+.      .-.+.+.+++|++.+ ..++++..+ ...+ -++.....+.........|.+|.|...
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~v~ws~kg-kq~v~~~g~-~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~  223 (381)
T d1xipa_         156 STKQLAQNVTSFDVTNSQLAVLLKDRS-FQSFAWRNG-EMEKQFEFSLPSELEELPVEEYSPLSVTILSP  223 (381)
T ss_dssp             CEEEEEESEEEEEECSSEEEEEETTSC-EEEEEEETT-EEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred             ccccccCCcceEEecCCceEEEEeCCc-EEEEEeCCC-ceeeccCCCCccccCCCcCCCcceeEEEEecC
Confidence            543332      223567777777666 555555433 2221 122222111111123446788999863

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=1.4  Score=38.27  Aligned_cols=52  Identities=4%  Similarity=0.044  Sum_probs=27.4

Q ss_pred             CeEEEEECCCCeEEEeecCCCce--eEEEecCCCCCEEEEEEC---------CCeEEEEECCCCc
Q 009380          305 GLIRLMDAEKEVFDLVYSSEYAV--FSLSQQPNNVNTLYFGEG---------QGGLNIWDVRSRK  358 (536)
Q Consensus       305 g~I~vwd~~~~~~~~~~~~~~~i--~~l~~~~~~~~~l~~g~~---------dg~i~i~d~~~~~  358 (536)
                      ..|.+||+.+++...+.....+-  .+++.. ++ .+++.|+.         -..+.+||..+..
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~   81 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMTNQ   81 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEE-CC-EEEEEeCcccCCCCccccchhhhccccccc
Confidence            35778998888765543221111  122222 23 45565552         1357788877654

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=92.21  E-value=1.4  Score=41.22  Aligned_cols=156  Identities=16%  Similarity=0.151  Sum_probs=86.3

Q ss_pred             CCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec-------CCCceeEEEecCCCCCEEEEEECCC----eE
Q 009380          281 HLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS-------SEYAVFSLSQQPNNVNTLYFGEGQG----GL  349 (536)
Q Consensus       281 h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~-------~~~~i~~l~~~~~~~~~l~~g~~dg----~i  349 (536)
                      -.+.|.+|+++|..++++++++..|-|..-+=.......+..       ....+.+|+++|.+++.+++++.+.    ..
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~   89 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   89 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCc
Confidence            467799999999998999998876655433322223333221       2346889999999888888876431    23


Q ss_pred             EEEECCC-CccceeEe---------ccCCCeEEEEEecCCCCEEEEEeCCCcEEEEeCCCCCCCCCCc---ceeecccCc
Q 009380          350 NIWDVRS-RKSATEWL---------LHEARINTIDFNPRNPNIMATSSTDGTACIWDLRSMATDKPEP---MKVLSHKRA  416 (536)
Q Consensus       350 ~i~d~~~-~~~~~~~~---------~h~~~i~~i~~~p~~~~~l~s~s~dg~i~iwdl~~~~~~~~~~---~~~~~~~~~  416 (536)
                      .+|--.. |+.-..+.         .....+..|.++|.+++.+.+++.++-|.. ....++. -..+   .........
T Consensus        90 gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~t-W~~~~~~~~~~~~~~~  167 (427)
T d2ebsa1          90 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKT-WTNVTSIPDAFTNGIG  167 (427)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSS-CEECTTSSCCCCSSSC
T ss_pred             cEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCce-eeecccCcccccCCcc
Confidence            3443332 33211111         012335678999988888887776655432 2222221 0000   011123345


Q ss_pred             eeEEEEccC-CCeEEE-EeCCCcE
Q 009380          417 VHSAYFSPS-GSSLAT-TSFDDTI  438 (536)
Q Consensus       417 v~~l~~sp~-g~~l~t-~s~dg~I  438 (536)
                      +..+.++|. ...|+. +...+.|
T Consensus       168 ~~~i~~~p~~~~~~y~~~~~~~gi  191 (427)
T d2ebsa1         168 YTSVIFDPERNGTIYASATAPQGM  191 (427)
T ss_dssp             EEEEEECTTSTTCEEEEESSTTCE
T ss_pred             ceEEEecccccceeeeeeeecccc
Confidence            788999984 344443 3333334

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=2.6  Score=36.32  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=15.5

Q ss_pred             CCCEEEEEcCCC-----cEEEEcCCcc
Q 009380          472 DDSCVFIGNMTR-----TVEVISPAQR  493 (536)
Q Consensus       472 ~g~~l~~gs~dg-----~I~v~d~~~~  493 (536)
                      ++++++.|+.++     .|.+||+.+.
T Consensus       242 ~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         242 QGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CCEEEEEecCCCCeecceEEEEECCCC
Confidence            677788876553     3778888764

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.94  E-value=5.3  Score=32.87  Aligned_cols=142  Identities=13%  Similarity=0.141  Sum_probs=83.2

Q ss_pred             EEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeecC----------CCceeEEEecCCCCCEEEEEEC-CCeEEEEE
Q 009380          285 ISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYSS----------EYAVFSLSQQPNNVNTLYFGEG-QGGLNIWD  353 (536)
Q Consensus       285 V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~~----------~~~i~~l~~~~~~~~~l~~g~~-dg~i~i~d  353 (536)
                      |.++++  ++.+..++|+......+|-++.+++..+...          ..-|..+.+...++.-++++.. .|.+++++
T Consensus       106 I~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         106 ILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            444444  4447889999888899999999887655431          2344555554444445666665 77777777


Q ss_pred             CCCCccceeEeccCCCeEEEEEecCCCCEEEEEe----CCCcEEEEeCCCCCCCCCC-c-ceee-cccCceeEEEEccCC
Q 009380          354 VRSRKSATEWLLHEARINTIDFNPRNPNIMATSS----TDGTACIWDLRSMATDKPE-P-MKVL-SHKRAVHSAYFSPSG  426 (536)
Q Consensus       354 ~~~~~~~~~~~~h~~~i~~i~~~p~~~~~l~s~s----~dg~i~iwdl~~~~~~~~~-~-~~~~-~~~~~v~~l~~sp~g  426 (536)
                      ...|.           ++.....+.+ . ++++-    ...-| -+|++.++-.... + ..+. -....|+-+.+.|++
T Consensus       184 pkeGS-----------~~~ay~~~gn-K-V~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd  249 (313)
T d2hu7a1         184 SGEGS-----------FSSASISPGM-K-VTAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG  249 (313)
T ss_dssp             CSSEE-----------EEEEEECTTS-C-EEEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTS
T ss_pred             CCCCc-----------ccceeEccCc-e-eeeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCC
Confidence            65544           3334444422 2 22221    11223 4477754311100 0 0111 123456677799999


Q ss_pred             CeEEEEeCCCcEEEEe
Q 009380          427 SSLATTSFDDTIGIWS  442 (536)
Q Consensus       427 ~~l~t~s~dg~I~iwd  442 (536)
                      ++++.+-.||.-++|.
T Consensus       250 ~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         250 RLAVVARREGRSAVFI  265 (313)
T ss_dssp             CEEEEEEETTEEEEEE
T ss_pred             cEEEEEecCCchheee
Confidence            9989999999999996

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=88.87  E-value=8.6  Score=35.27  Aligned_cols=157  Identities=13%  Similarity=0.120  Sum_probs=86.2

Q ss_pred             cCCceEEEEEEecCCccEEEEEeCCCcEEEEECCCCCCCCCce----EEeccCCCCEEEEEEecCCCCEEEEEECC----
Q 009380          233 MPGRITQMKFLPCSDVRMVVAGSKLGNITFWNLDSQQDEDNGI----YLFRTHLGPISGIVTQQYCLSKIFTSCYD----  304 (536)
Q Consensus       233 ~~~~I~~v~~~p~~~~~~l~tg~~dg~v~iwd~~~~~~~~~~~----~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----  304 (536)
                      -.+.|.+|+++|. +.++|.+|+..|-|  |...+.......+    .....+...|.+|+++|.+++.|+.+..+    
T Consensus        10 ~gg~~~~i~~~P~-~~~~~ya~~~~gGv--~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~   86 (427)
T d2ebsa1          10 GGGYITGIVAHPK-TKDLLYARTDIGGA--YRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGD   86 (427)
T ss_dssp             BCSCEEEEEECSS-STTCEEEEESSSCE--EEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTS
T ss_pred             CCCcEEEEEECCC-CCCEEEEEecCCCE--EEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCC
Confidence            3678999999997 55677777766655  4333321101111    11112334689999999887777766532    


Q ss_pred             CeEEEEE-CCCCeE-EEeec---------CCCceeEEEecCCCCCEEEEEECCCeEEEEECCCCccceeE------eccC
Q 009380          305 GLIRLMD-AEKEVF-DLVYS---------SEYAVFSLSQQPNNVNTLYFGEGQGGLNIWDVRSRKSATEW------LLHE  367 (536)
Q Consensus       305 g~I~vwd-~~~~~~-~~~~~---------~~~~i~~l~~~~~~~~~l~~g~~dg~i~i~d~~~~~~~~~~------~~h~  367 (536)
                      ....||- ...++. ..+..         ....+..+.++|.+++.+++++.++.|.. ....++.-..+      ....
T Consensus        87 ~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~-S~D~G~tW~~~~~~~~~~~~~  165 (427)
T d2ebsa1          87 EWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNG  165 (427)
T ss_dssp             SCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEE-ESSTTSSCEECTTSSCCCCSS
T ss_pred             cCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceee-ecCCCceeeecccCcccccCC
Confidence            1123443 333322 22111         11345678999988888888887765542 22333322211      1123


Q ss_pred             CCeEEEEEecCCCCEEEEEe-CCCcEE
Q 009380          368 ARINTIDFNPRNPNIMATSS-TDGTAC  393 (536)
Q Consensus       368 ~~i~~i~~~p~~~~~l~s~s-~dg~i~  393 (536)
                      ..+..|.++|.++..|..+. ..+.|.
T Consensus       166 ~~~~~i~~~p~~~~~~y~~~~~~~giy  192 (427)
T d2ebsa1         166 IGYTSVIFDPERNGTIYASATAPQGMY  192 (427)
T ss_dssp             SCEEEEEECTTSTTCEEEEESSTTCEE
T ss_pred             ccceEEEecccccceeeeeeeecccce
Confidence            34788999997766555443 333443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.21  E-value=10  Score=35.31  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             eEEeccCCCCEEEEEEecCCCCEEEEEECCCeEEEEECCCCeEEEeec---------CCCceeEEEecCC--CCCEEEEE
Q 009380          275 IYLFRTHLGPISGIVTQQYCLSKIFTSCYDGLIRLMDAEKEVFDLVYS---------SEYAVFSLSQQPN--NVNTLYFG  343 (536)
Q Consensus       275 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~I~vwd~~~~~~~~~~~---------~~~~i~~l~~~~~--~~~~l~~g  343 (536)
                      +..+...-..-++|+|.|++ ++|++--..|.|++++..++....+..         .+.....|+++|+  ...+++..
T Consensus        19 ~~~ia~~L~~P~~la~~pdg-~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvs   97 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             EEEEECCCCCceEEEEeCCC-eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEE
Confidence            33444334567899999998 777766557999999988776544332         2356789999985  22455543